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At least 973 records · Page 54Linked to original sources

Time-fractional flow equations (t-FFEs) to upscale transient groundwater flow characterized by temporally non-darcian flow due to medium heterogeneity

Upscaling groundwater flow is a fundamental challenge in hydrogeology. This study proposed time-fractional flow equations (t-FFEs) for upscaling long-term, transient groundwater flow and propagation of pressure heads in heterogeneous media. Monte Carlo simulations showed that, with increasing variance and correlation of the hydraulic conductivity ( K ), flow dynamics gradually deviated from Darcian flow and exhibit sub-diffusive, time-dependent evolution which can be separated into three major stages. At the early stage, the interconnected high- K zones dominated flow, while at intermediate times, the transverse flow due to mixed high- and low- K zones caused delayed rise of the piezometric head. At late times when flow in the relatively high- K domains reached stability, cells with very low- K continued to block the entry of water and generate “islands” with low piezometric head, significantly extending the temporal evolution of the piezometric head. The elongated water breakthrough curve cannot be quantified by the flow equation with an effective K , the space-fractional flow equation, or the multi-rate mass transfer (MRMT) flow model with a few rates, motivating the development of t-FFEs assuming temporally non-Darcian flow. Model applications showed that both the early and intermediate stages of flow dynamics can be captured by a single-index t-FFE (whose index is the exponent of the power-law probability density function of the random operational time for water parcels), but the overall evolution of flow dynamics, especially the enhanced retention of flow at later times, required a distributed-order t-FFE with variable indexes for different flow phases that can dominate flow dynamics at different stages. Therefore, transient groundwater flow in aquifers with spatially stationary heterogeneity can be temporally non-Darcian and non-stationary, due to the time-sensitive, combined effects of interconnected high- K channels and isolated low- K deposits on flow dynamics (which is the hydrogeological mechanism for the temporally non-Darcian flow and sub-diffusive pressure propagation), whose long-term behavior can be quantified by multi-index stochastic models.

Water Resources Research↗

Modeling of barrier breaching during Hurricanes Sandy and Matthew

Physical processes driving barrier island change during storms are important to understand to mitigate coastal hazards and to evaluate conceptual models for barrier evolution. Spatial variations in barrier island topography, landcover characteristics, and nearshore and back-barrier hydrodynamics can yield complex morphological change that requires models of increasing resolution and physical complexity to predict. Using the Coupled Ocean-Atmosphere-Wave-Sediment Transport (COAWST) modeling system, we investigated two barrier island breaches that occurred on Fire Island, NY during Hurricane Sandy (2012) and at Matanzas, FL during Hurricane Matthew (2016). The model employed a recently implemented infragravity (IG) wave driver to represent the important effects of IG waves on nearshore water levels and sediment transport. The model simulated breaching and other changes with good skill at both locations, resolving differences in the processes and evolution. The breach simulated at Fire Island was 250 m west of the observed breach, whereas the breach simulated at Matanzas was within 100 m of the observed breach. Implementation of the vegetation module of COAWST to allow three-dimensional drag over dune vegetation at Fire Island improved model skill by decreasing flows across the back-barrier, as opposed to varying bottom roughness that did not positively alter model response. Analysis of breach processes at Matanzas indicated that both far-field and local hydrodynamics influenced breach creation and evolution, including remotely generated waves and surge, but also surge propagation through back-barrier waterways. This work underscores the importance of resolving the complexity of nearshore and back-barrier systems when predicting barrier island change during extreme events.

Florida, New York↗

Time-dependent weakening of granite at hydrothermal conditions

The evolution of a fault's frictional strength during the interseismic period is a critical component of the earthquake cycle, yet there have been relatively few studies that examine the time-dependent evolution of strength at conditions representative of seismogenic depths. Using a simulated fault in Westerly granite, we examined how frictional strength evolves under hydrothermal conditions up to 250°C during slide-hold-slide experiments. At temperatures ≤100°C, frictional strength generally increases with hold duration but, at 200 and 250°C, an initial increase in strength transitions to rapid time-dependent weakening for holds longer than 14 hr. Forward modeling of long hold periods at 250°C using the rate and state friction constitutive equations requires a second, strongly negative, state variable with a long evolution distance. This implies that significant hydrothermal alteration is occurring at 250°C, consistent with microstructural observations of dissolution and secondary mineral precipitation.

Geophysical Research Letters↗

Catchment coevolution and the geomorphic origins of variable source area hydrology

Features of landscape morphology—including slope, curvature, and drainage dissection—are important controls on runoff generation in upland landscapes. Over long timescales, runoff plays an essential role in shaping these same features through surface erosion. This feedback between erosion and runoff generation suggests that modeling long-term landscape evolution together with dynamic runoff generation could provide insight into hydrological function. Here we examine the emergence of variable source area runoff generation in a new coupled hydro-geomorphic model that accounts for water balance partitioning between surface flow, subsurface flow, and evapotranspiration as landscapes evolve over millions of years. We derive a minimal set of dimensionless numbers that provide insight into how hydrologic and geomorphic parameters together affect landscapes. Across the parameter space we investigated, model results collapsed to a single inverse relationship between the dimensionless relief and the ratio of catchment quickflow to discharge. Furthermore, we found an inverse relationship between the Hillslope number, which describes topographic relief relative to aquifer thickness, and the proportion of the landscape that was variably saturated. While the model generally produces fluvial topography visually similar to simpler landscape evolution models, certain parameter combinations produce wide valley bottom wetlands and non-dendritic, trellis-like drainage networks, which may reflect real conditions in some landscapes where aquifer gradients become decoupled from topography. With these results, we demonstrate the power of hydro-geomorphic models for generating new insights into hydrological processes, and also suggest that subsurface hydrology may be integral for modeling aspects of long-term landscape evolution.

Water Resources Research↗

Detailed observations of California foreshock sequences: Implications for the earthquake initiation process

We find that foreshocks provide clear evidence for an extended nucleation process before some earthquakes. In this study, we examine in detail the evolution of six California foreshock sequences, the 1986 Mount Lewis ( M L = 5.5), the 1986 Chalfant ( M L = 6.4), the 1986 Stone Canyon ( M L = 4.7), the 1990 Upland ( M L = 5.2), the 1992 Joshua Tree ( M W = 6.1), and the 1992 Landers ( M W = 7.3) sequence. Typically, uncertainties in hypocentral parameters are too large to establish the geometry of foreshock sequences and hence to understand their evolution. However, the similarity of location and focal mechanisms for the events in these sequences leads to similar foreshock waveforms that we cross correlate to obtain extremely accurate relative locations. We use these results to identify small-scale fault zone structures that could influence nucleation and to determine the stress evolution leading up to the mainshock. In general, these foreshock sequences are not compatible with a cascading failure nucleation model in which the foreshocks all occur on a single fault plane and trigger the mainshock by static stress transfer. Instead, the foreshocks seem to concentrate near structural discontinuities in the fault and may themselves be a product of an aseismic nucleation process. Fault zone heterogeneity may also be important in controlling the number of foreshocks, i.e., the stronger the heterogeneity, the greater the number of foreshocks. The size of the nucleation region, as measured by the extent of the foreshock sequence, appears to scale with mainshock moment in the same manner as determined independently by measurements of the seismic nucleation phase. We also find evidence for slip localization as predicted by some models of earthquake nucleation.

Journal of Geophysical Research B: Solid Earth↗

Links between magma-tectonic rate balances, plutonism, and volcanism

With Smith's (1979) model of ash flow magmatism as the point of departure, quantitative regimes of crustal magmatic evolution are outlined. The average extrusive regime of ash flow magmatism operates at a rate of about 0.001 km 3 /yr; progressively larger episodes of increasing repose times characterize the evolution of caldera-forming eruptions. The intrusive regime operates at an inferred average rate of about 0.01 km 3 /yr expressed in terms of the volumetric influx of mafic magma from the mantle, based on the record of silicic rates of extrusion and a 10:1 intrusive to extrusive ratio derived from evidence of zoned silicic systems. This rate is almost identical with the mean cumulative rate for the Hawaiian-Emperor system of basaltic volcanism, which is determined to be 0.015 km 3 /yr. Fluctuations about a mean rate of 10 −2 km 3 /yr lead to a threefold classification of magmatic regimes in terms of source power, depending on whether they are persistently greater than (HHER regime), about equal to (MHER regime), or lower than (LHER regime) the mean Hawaiian-Emperor rate. Ash flow magmatism correlates with the MHER regime, averaged over a sufficiently long time. Thus the conditions of Hawaiian-Emperor magmatism are identified with a characteristic power of magma transfer rates that optimize mechanisms for creation of high-level chambers of derivative and fractionated silicic magma (terminology of Smith (1979)) within sufficiently localized regions of high residence times. These conditions represent a balance point, and a bifurcation, in dynamic paths of magmatic evolution leading to widely divergent types of plutonic-volcanic associations. Categorical examples of the principal types of igneous path are discussed relative to continental basalt, silicic ash flow, batholithic granite, and intrusive porphyry systems. The Henry Mountains, Utah, are thought to represent an example of an intrusive porphyry generated in the LHER regime of a mafic source system lacking sufficient power for volcanic expression or significant mineralization. Long Valley, California (and possibly other systems along the eastern front of the Sierra Nevada), is an example operating at the mean rate with transient excursions to higher and lower rates. In regions of rapid extension and/or volcanic propagation (whether linear or areal) these regimes give rise to basaltic eruptions ranging from isolated cinder cones to flood basalts.

Journal of Geophysical Research Solid Earth↗

Oxidation during magmatic differentiation, Finnmarka Complex, Oslo area, Norway: Part 2, the mafic silicates

Electron-microprobe analyses are presented for pyroxene, amphibole, and biotite from monzonite, granodiorite, and granite at Finnmarka, Norway. Compositional trends measured in biotite, present in all three rock types, and in amphibole, present in the monzonite and granodiorite, are markedly atypical and are interpreted as reflecting crystallization under progressively more oxidizing conditions. The average Fe/Fe + Mg for biotites from successively more silicic rock types changes from 0.64 → 0.35 → 0.28, and for amphiboles changes from 0.58 in the monzonite to 0.29 in the granodiorite. Analyses of selected areas within amphibole grains in the granodiorite show marked chemical variations, although single-crystal X-ray photographs are sharp and do not reveal multiple phases. On the basis of 33 such analyses, four coupled substitutions are identified as operative; the most unusual finding is the relation of 1 Ti cation to 4 Al IV cations in the unit cell. Variations within individual amphibole grains of the granodiorite resemble changes noted in evolution of amphibole composition from monzonite to granodiorite and are interpreted as reflecting progressive oxidation. Consideration of these data for the mafic silicates, data for the opaque oxides, and the extensive formation of sphene in the granodiorite, has allowed development of schematic reactions and an overall picture of magmatic environment and evolution at Finnmarka. Crystallization apparently took place at PH 2 o of 1000 bars or less and a temperature of about 700 °C. The trend of oxidation during differentiation is more extreme than any heretofore reported. Amphiboles, as well as biotites, may participate in oxidation reactions and may reflect the oxidation-reduction processes that occurred during magmatic evolution.

Oslo↗

The chromosomes of the Didelphidae (Marsupialia) and their evolutionary significance

One hundred and seventy-seven specimens of American didelphids, representing 9 genera and 22 species have been studied for their chromosomal constitution. Didelphids are very conservative in chromosomal complements. All of the studied species can be sorted into one of three kinds of karyotypes: 2 n = 14 (three species of Didelphis, one of Lutreolina, two of Philander, and one of Chironectes) , 2 n = 14 (eight species of Marmosa, one of Metachirus, three of Caluromys, and one of Dromiciops), and 2 n = 18 (three species of Monodelphis). These karyotypes are stable, showing only minor variations within each basic pattern. It is concluded that chromosomals evolution in the Didelphidae proceededs from low numbers to higher numbers by a process of centromeric fissioning complemented by some pericentric inversions and/or translocations. The pattern of karyotypic stability is consistent with bradytely at the organismic level of evolution. This is explained by a low rate of regulatory genetic evolution promoted by epistatic selection favouring the retention of chromosomal arrangements highly advantageous for overall adaptation.

Biological Journal of the Linnean Society↗

Origin of the Blue Ridge escarpment along the passive margin of Eastern North America

The Blue Ridge escarpment is a rugged landform situated within the ancient Appalachian orogen. While similar in some respects to the great escarpments along other passive margins, which have evolved by erosion following rifting, its youthful topographic expression has inspired proposals of Cenozoic tectonic rejuvenation in eastern North America. To better understand the post-orogenic and post-rift geomorphic evolution of passive margins, we have examined the origin of this landform using low-temperature thermochronometry and manipulation of topographic indices. Apatite (U-Th)/He and fission-track analyses along transects across the escarpment reveal a younging trend towards the coast. This pattern is consistent with other great escarpments and fits with an interpretation of having evolved by prolonged erosion, without the requirement of tectonic rejuvenation. Measured ages are also comparable specifically to those measured along other great escarpments that are as much as 100 Myr younger. This suggests that erosional mechanisms that maintain rugged escarpments in the early post-rift stages may remain active on ancient passive margins for prolonged periods. The precise erosional evolution of the escarpment is less clear, however, and several end-member models can explain the data. Our preferred model, which fits with all data, involves a significant degree of erosional escarpment retreat in the Cenozoic. Although this suggests that early onset of topographic stability is not required of passive margin evolution, more data are required to better constrain the details of the escarpment's development.

Blue Ridge escarpment↗

Phylogenetic distribution of a male pheromone that may exploit a nonsexual preference in lampreys

Pheromones are among the most important sexual signals used by organisms throughout the animal kingdom. However, few are identified in vertebrates, leaving the evolutionary mechanisms underlying vertebrate pheromones poorly understood. Pre-existing biases in receivers’ perceptual systems shape visual and auditory signaling systems, but studies on how receiver biases influence the evolution of pheromone communication remain sparse. The lamprey Petromyzon marinus uses a relatively well-understood suite of pheromones and offers a unique opportunity to study the evolution of vertebrate pheromone communication. Previous studies indicate that male signaling with the mating pheromone 3-keto petromyzonol sulfate (3kPZS) may exploit a nonsexual attraction to juvenile-released 3kPZS that guides migration into productive rearing habitat. Here, we infer the distribution of male signaling with 3kPZS using a phylogenetic comparison comprising six of ten genera and two of three families. Our results indicate that only P. marinus and Ichthyomyzon castaneus release 3kPZS at high rates. Olfactory and behavioral assays with P. marinus, I. castaneus and a subset of three other species that do not use 3kPZS as a sexual signal indicate that male signaling might drive the evolution of female adaptations to detect 3kPZS with specific olfactory mechanisms and respond to 3kPZS with targeted attraction relevant during mate search. We postulate that 3kPZS communication evolved independently in I. castaneus and P. marinus , but cannot eliminate the alternative that other species lost 3kPZS communication. Regardless, our results represent a rare macroevolutionary investigation of a vertebrate pheromone and insight into the evolutionary mechanisms underlying pheromone communication.

Journal of Evolutionary Biology↗

Local biotic adaptation of trees and shrubs to plant neighbors

Natural selection as a result of plant–plant interactions can lead to local biotic adaptation. This may occur where species frequently interact and compete intensely for resources limiting growth, survival, and reproduction. Selection is demonstrated by comparing a genotype interacting with con- or hetero-specific sympatric neighbor genotypes with a shared site-level history (derived from the same source location), to the same genotype interacting with foreign neighbor genotypes (from different sources). Better genotype performance in sympatric than allopatric neighborhoods provides evidence of local biotic adaptation. This pattern might be explained by selection to avoid competition by shifting resource niches (differentiation) or by interactions benefitting one or more members (facilitation). We tested for local biotic adaptation among two riparian trees, Populus fremontii and Salix gooddingii , and the shrub Salix exigua by transplanting replicated genotypes from multiple source locations to a 17 000 tree common garden with sympatric and allopatric treatments along the Colorado River in California. Three major patterns were observed: 1) across species, 62 of 88 genotypes grew faster with sympatric neighbors than allopatric neighbors; 2) these growth rates, on an individual tree basis, were 44, 15 and 33% higher in sympatric than allopatric treatments for P. fremontii, S. exigua and S. gooddingii , respectively, and; 3) survivorship was higher in sympatric treatments for P. fremontii and S. exigua . These results support the view that fitness of foundation species supporting diverse communities and dominating ecosystem processes is determined by adaptive interactions among multiple plant species with the outcome that performance depends on the genetic identity of plant neighbors. The occurrence of evolution in a plant-community context for trees and shrubs builds on ecological evolutionary research that has demonstrated co-evolution among herbaceous taxa, and evolution of native species during exotic plants invasion, and taken together, refutes the concept that plant communities are always random associations.

Arizona↗

Fluid spatial dynamics of West Nile virus in the USA: Rapid spread in a permissive host environment

The introduction of West Nile virus (WNV) into North America in 1999 is a classical example of viral emergence in a new environment, with its subsequent dispersion across the continent having a major impact on local bird populations. Despite the importance of this epizootic, the pattern, dynamics and determinants of WNV spread in its natural hosts remain uncertain. In particular, it is unclear whether the virus encountered major barriers to transmission, or spread in an unconstrained manner, and if specific viral lineages were favored over others indicative of intrinsic differences in fitness. To address these key questions in WNV evolution and ecology we sequenced the complete genomes of approximately 300 avian isolates sampled across the USA between 2001-2012. Phylogenetic analysis revealed a relatively ‘star-like' tree structure, indicative of explosive viral spread in US, although with some replacement of viral genotypes through time. These data are striking in that viral sequences exhibit relatively limited clustering according to geographic region, particularly for those viruses sampled from birds, and no strong phylogenetic association with well sampled avian species. The genome sequence data analysed here also contain relatively little evidence for adaptive evolution, particularly on structural proteins, suggesting that most viral lineages are of similar fitness, and that WNV is well adapted to the ecology of mosquito vectors and diverse avian hosts in the USA. In sum, the molecular evolution of WNV in North America depicts a largely unfettered expansion within a permissive host and geographic population with little evidence of major adaptive barriers.

Journal of Virology↗

Tin granites of Seward Peninsula, Alaska

Seven granite plutons, spatially and genetically related to tin metalization, are exposed in a 170-km-long belt across northwestern Seward Peninsula, Alaska. These plutons are cupolas and epizonal composite stocks that consist of several textural varieties of biotite granite, including medium- to coarse-grained seriate biotite granite, porphyritic biotite granite with an aplitic groundmass, and fine- to medium-grained equigranular biotite granite. The common accessory minerals are fluorite, allanite, apatite, and zircon. Other accessory minerals that are locally present include tourmaline, sphene, opaque oxide minerals, and late-forming (deuteric) muscovite and chlorite. The granites range in major-element contents as follows: SiO 2 , 72.5% to 76.6%; A1 2 O 3 , 12.7% to 14.3%; Na 2 O, 2.9% to 4.0%; K 2 O, 3.9% to 5.6%; and CaO, 0.6% to 1.2%. The sum of FeO + Fe 2 O 3 + MgO ranges from 0.3% to 2.4%; and the K 2 O to Na 2 O ratio from 1.1 to 1.8. The 0.1% to 0.9% F and 0.01% to 0.2% Cl reflect the over-all volatile-rich nature of the granites. The granites contain average or below-average concentrations of Co, Sc, Cr, and Zn, and generally above-average to distinctly high concentrations of Th, U, Hf, and Ta. The large cations emphasize the evolved nature of the granites; the Rb/Sr ratio is as high as 90 in some samples. Initial 87 Sr/ 86 Sr ratios range from 0.708 to as high as 0.720. The three Rb-Sr isochrons defined by the data agree with K-Ar age determinations and show that the stocks were emplaced during the Late Cretaceous, between about 70 and 80 m.y. ago. The field, petrologic, and geochemical data indicate that the plutons had a multistage origin that involved large-scale melting of sialic crust, emplacement of magmas derived from batholithic fractionation at depth, and subsequent evolution of these magmas to generate small volumes of more highly evolved residual magmas. Although evolution of the granite complexes was largely governed by crystal-melt fractionation, some minor-element variations in the highly evolved granites cannot be explained by this process. For example, the distribution of rubidium and the light rare-earths appears to have been influenced by volatile depletion at the final stages of crystallization. The field data, petrologic data, and variation trends, such as distinct shifts toward higher albite contents in the residual granites, suggest that the coexistence of a volatile phase was important in their evolution. These results require that models seeking to explain compositional gradients in high-level granite (rhyolite) systems fully consider the role of a coexisting volatile phase.

Alaska↗

Fast Pliocene integration of the Central Anatolian Plateau drainage: Evidence, processes, and driving forces

Continental sedimentation was widespread across the Central Anatolian Plateau in Miocene–Pliocene time, during the early stages of plateau uplift. Today, however, most sediment produced on the plateau is dispersed by a well-integrated drainage and released into surrounding marine depocenters. Residual long-term (10 6 –10 7 yr) sediment storage on the plateau is now restricted to a few closed catchments. Lacustrine sedimentation was widespread in the Miocene–Pliocene depocenters. Today, it is also restricted to the residual closed catchments. The present-day association of closed catchments, long-term sediment storage, and lacustrine sedimentation suggests that the Miocene–Pliocene sedimentation also occurred in closed catchments. The termination of sedimentation across the plateau would therefore mark the opening of these closed catchments, their integration, and the formation of the present-day drainage. By combining newly dated volcanic markers with previously dated sedimentary sequences, we show that this drainage integration occurred remarkably rapidly, within 1.5 m.y., at the turn of the Pliocene. The evolution of stream incision documented by these markers and newly obtained 10 Be erosion rates allow us to discriminate the respective contributions of three potential processes to drainage integration, namely, the capture of closed catchments by rivers draining the outer slopes of the plateau, the overflow of closed lakes, and the avulsion of closed catchments. Along the southern plateau margin, rivers draining the southern slope of the Central Anatolian Plateau expanded into the plateau interior; however, only a small amount of drainage integration was achieved by this process. Instead, avulsion and/or overflow between closed catchments achieved most of the integration, and these top-down processes left a distinctive sedimentary signal in the form of terminal lacustrine limestone sequences. In the absence of substantial regional climate wetting during the early Pliocene, we propose that two major tectonic events triggered drainage integration, separately or in tandem: the uplift of the Central Anatolian Plateau and the tectonic completion of the Anatolian microplate. Higher surface uplift of the eastern Central Anatolian Plateau relative to the western Central Anatolian Plateau promoted more positive water balances in the eastern catchments, higher water discharge, and larger sediment fluxes. Overflow/avulsion in some of the eastern catchments triggered a chain of avulsions and/or overflows, sparking sweeping integration across the plateau. Around 5 Ma, the inception of the full escape of the Anatolian microplate led to the disruption of the plateau surface by normal and strike-slip faults. Fault scarps partitioned large catchments fed by widely averaged sediment and water influxes into smaller catchments with more contrasted water balances and sediment fluxes. The evolution of the Central Anatolian Plateau shows that top-down processes of integration can outcompete erosion of outer plateau slopes to reintegrate plateau interior drainages, and this is overlooked in current models, in which drainage evolution is dominated by bottom-up integration. Top-down integration has the advantage that it can be driven by more subtle changes in climatic and tectonic boundary conditions than bottom-up integration.

Central Anatolian Plateau↗

Chapter 6: Chronology of displacement on the San Andreas fault in central California: Evidence from reversed positions of exotic rock bodies near Parkfield, California

This chapter presents a synthesis of data pertaining to post-early Miocene slip on the San Andreas fault in central California and suggests a three-phase evolition of the San Andreas system. The cricial evidence that supports the three phases of evolution conies from the reversed positions of two exotic rock fragments in the vicinity of Parkfield, California. The three-phase evolution of the San Andreas is also supported by the correlation of other exotic fragments, the basement rocks on which they lie, overlying Tertiary stratigraphic sequences, and distinctive Miocene strata derived from these fragments during their transport along the fault. The 40-km-long section of the San Andreas fault near Parkfield is characterized by exotic blocks composed of Cretaceous hornblende quartz gabbro at Gold Hill and lower Miocene volcanic rocks in Lang Canyon. The gabbro is correlated petrographically with similar rocks near Eagle Rest Peak, 145 km to the southeast, and near Logan, 165 km to the northwest. The lower Miocene volcanic rocks, informally termed the volcanic rocks of Lang Canyon, are correlated with the Neenach Volcanics 220 km to the southeast and the Pinnacles Volcanics 95 km to the northwest. All three fragments of volcanic rocks are unconformably overlain by similar successions of Tertiary sedimentary rocks. The original positions of the bodies of gabbro and volcanic bodies and their overlying sedimentary cover may be reconstructed from these exotic fragments that now lie along the San Andreas fault between San Juan Bautista and the northwestern Mojave Desert. The original undeformed gabbroic body was composed of the hornblende quartz gabbro of Eagle Rest Peak, Gold Hill, and Logan. In its initial prefaulted position, the original gabbroic body lay about 55 km northwest of the early Miocene volcanic assemblage. The undeformed volcanic assemblage was composed of the Neenach Volcanics, Pinnacles Volcanics, and volcanic rocks of Lang Canyon. The original spatial relationship between the undeformed gabbro and volcanic assemblage and their sedimentary cover is preserved in the present position of the gabbro of Logan and the Pinnacles Volcanics. However, in the Parkfield segment of the San Andreas, the gabbro of Gold Hill lies east of the main trace of the San Andreas fault, and the volcanic rocks of Lang Canyon lie 2 km west of the fault. The reversed relative positions of the gabbro of Gold Hill and the volcanic rocks of Lang Canyon suggest a complex history of movement on the San Andreas fault. Consequently, plainspastic reconstruction of these bodies and their overlying sedimentary cover is constrained by the unusual distribution of exotic blocks near Parkfield. The resulting proposed history of movement is divided into three stages that begins with the eruption of the early Miocene volcanic rocks about 24 Ma. The Neenach-Pinnacles Volcanics, erupted after passage of the Mendocino triple junction, were soon cut by the growing San Andreas transform system. During the first phase of movement the Salinian block, which contains the Pinnacles and Logan godies, was detached from the Mojave and Sierran blocks. The Pinnacles and Logan bodies were transported about 95 km northwest from the Neenach Volcanics and the gabbro of Eagle Rest Peak. At the end of the first phase, the Logan and Pinnacles fragments lay adjacent to the west side of what is now the San Joaquin Valley. Concurrently, fan-deltas deposited debris that was derived from the Gabilan Range, the fan-deltas spread across the San Andreas fault into the middle Miocene sea in the San Joaquin trough. During the second phase of movement, the San Andreas—at least locally—stepped eastward and detached a second fragment from the Neenach Volcanics. This fragment consists of the volcanic rocks of Lang Canyon. Slip was transferred to the new trace of the San Andreas fault, and the older trace became completely or largely inactive. After transferral of slip to the new trace of the San Andreas fault, the volcanic rocks of Lang Canyon and the Pinnacles Volcanics remained about 95 km apart on the Salinian Block west of the San Andreas fault. During the third phase, the Gold Hill fragement was slivered off the Logan fragment and was tectonically emplaced on the east side of the San Andreas fault when the Logan fragment lay at the latitude of Gold Hill. The process of slivering off of the Gold Hill fragment was accomplished by deformation of the San Andreas in an eastward bend along what is now the Jack Ranch fault. Bending of the fault was stimulated by the presence of highly sheared Franciscan rocks that crop out near the San Andreas and extend to great depth. Eventually the San Andreas bent to such a degree that slip could not be conducted around the bend, and a new, stable, straight segment was formed. The straightening of the fault resulted in slivering of the Gold Hill fragment from the Logan fragment. After detachment of the Gold Hill fragment, the Salinian block containing the gabbro of Logan, the Pinnacles Volcanics, and the volcanic rocks of Lang Canyon was transported an additional 160 km northwest to its present position. This reconstruction honors the current positions of all the related exotic fragments of gabbro, volcanics, and sedimentary rocks. The timing of the sequence of movements required to reconstruct the original bodies suggests that the three phases of evolution of the San Andreas fault in central California are characterized by increasing slip rates. The rate for the first phase probably averaged about 10 mm/yr over a period of about 8 m.y. The rate for the second phase averaged about 8 mm/yr over a period of about 7 m.y. The rate rate for the third phase averaged about 33 mm/yr over a period of about 5 m.y.

California↗

Genetic characterization of Hawaiian isolates of Plasmodium relictum reveals mixed-genotype infections

Background: The relatively recent introduction of a highly efficient mosquito vector and an avian pathogen (Plasmodium relictum) to an isolated island ecosystem with nai??ve, highly susceptible avian hosts provides a unique opportunity to investigate evolution of virulence in a natural system. Mixed infections can significantly contribute to the uncertainty in host-pathogen dynamics with direct impacts on virulence. Toward further understanding of how host-parasite and parasite-parasite relationships may impact virulence, this study characterizes within-host diversity of malaria parasite populations based on genetic analysis of the trap (thrombospondin-related anonymous protein) gene in isolates originating from Hawaii, Maui and Kauai Islands. Methods: A total of 397 clones were produced by nested PCR amplification and cloning of a 1664 bp fragment of the trap gene from two malarial isolates, K1 (Kauai) and KV115 (Hawaii) that have been used for experimental studies, and from additional isolates from wild birds on Kauai, Maui and Hawaii Islands. Diversity of clones was evaluated initially by RFLP-based screening, followed by complete sequencing of 33 selected clones. Results: RFLP analysis of trap revealed a minimum of 28 distinct RFLP haplotypes among the 397 clones from 18 birds. Multiple trap haplotypes were detected in every bird evaluated, with an average of 5.9 haplotypes per bird. Overall diversity did not differ between the experimental isolates, however, a greater number of unique haplotypes were detected in K1 than in KV115. We detected high levels of clonal diversity with clear delineation between isolates K1 and KV115 in a haplotype network. The patterns of within-host haplotype clustering are consistent with the possibility of a clonal genetic structure and rapid within-host mutation after infection. Conclusion: Avian malaria (P. relictum) and Avipoxvirus are the significant infectious diseases currently affecting the native Hawaiian avifauna. This study shows that clonal diversity of Hawaiian isolates of P. relictum is much higher than previously recognized. Mixed infections can significantly contribute to the uncertainty in host-pathogen dynamics with direct implications for host demographics, disease management strategies, and evolution of virulence. The results of this study indicate a widespread presence of multiple-genotype malaria infections with high clonal diversity in native birds of Hawaii, which when coupled with concurrent infection with Avipoxvirus, may significantly influence evolution of virulence. ?? 2008 Jarvi et al; licensee BioMed Central Ltd.

Biology Direct↗

Coevolution with host fishes shapes parasitic life histories in a group of freshwater mussels (Unionidae: Quadrulini)

Ecological interactions among species often lead to parasitic lineages coevolving with host resources, which is often suggested as the primary driver of parasite diversification. Freshwater mussels are bivalves that possess a parasitic life cycle requiring larval encystment on freshwater vertebrates to complete metamorphosis. The North American freshwater mussel tribe Quadrulini has a suite of life history adaptations including highly specialized patterns of host use, infection strategies, and variable larval morphologies. However, the evolution of life histories has yet to be explored using phylogenetic comparative methods. In this study, we use a holistic approach incorporating biogeographical, ecological, molecular, and morphological datasets to reconstruct the evolution of Quadrulini. Comparative phylogenetic analyses suggested the diversification of Quadrulini has been driven, at least in part, by codiversification with their primary host fishes in Ictaluridae. Major diversification events in both ictalurids and quadrulines were estimated to have occurred in the Mississippi River basin throughout the Miocene. Life history characteristics associated with parasitism were supported to have coevolved with host repertories, supporting the hypothesis that ecological interactions with host fishes have shaped the evolution of highly specialized traits in this group. Our findings demonstrate the importance of ecological interactions with host resources in shaping the evolutionary history of freshwater mussels.

Bulletin of the Society of Systematic Biologists↗

Assessing grain-size correspondence between flow and deposits of controlled floods in the Colorado River, USA

Flood-deposited sediment has been used to decipher environmental parameters such as variability in watershed sediment supply, paleoflood hydrology, and channel morphology. It is not well known, however, how accurately the deposits reflect sedimentary processes within the flow, and hence what sampling intensity is needed to decipher records of recent or long-past conditions. We examine these problems using deposits from dam-regulated floods in the Colorado River corridor through Marble Canyon–Grand Canyon, Arizona, U.S.A., in which steady-peaked floods represent a simple end-member case. For these simple floods, most deposits show inverse grading that reflects coarsening suspended sediment (a result of fine-sediment-supply limitation), but there is enough eddy-scale variability that some profiles show normal grading that did not reflect grain-size evolution in the flow as a whole. To infer systemwide grain-size evolution in modern or ancient depositional systems requires sampling enough deposit profiles that the standard error of the mean of grain-size-change measurements becomes small relative to the magnitude of observed changes. For simple, steady-peaked floods, 5–10 profiles or fewer may suffice to characterize grain-size trends robustly, but many more samples may be needed from deposits with greater variability in their grain-size evolution.

Journal of Sedimentary Research↗