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At least 955 records · Page 53Linked to original sources
USGS2024

Realizing the potential of eDNA biodiversity monitoring tools in the marine environment with application to offshore renewable energy

The U.S. Geological Survey (USGS) researches the biological diversity and distribution of species to support management, conservation, and resource use decisions. USGS scientists advance detection and monitoring technologies to assess changes in fish and wildlife populations, biodiversity, and the health of ecosystems. The United States is planning to install 30 gigawatts of offshore marine and wind energy by 2030. However, the effects on fish and wildlife and their habitats are not well understood. The USGS is a leader in the field of eDNA technologies and has helped advance robotic eDNA samplers, has extensive experience working in the offshore environment, and has developed novel and actionable statistical methods and standards for eDNA monitoring applications. This fact sheet presents key eDNA research and development advances needed for realizing the potential of eDNA biodiversity monitoring tools in the marine environment and applying eDNA monitoring to offshore renewable energy development. New and cost-effective tools for measuring changes in biodiversity in response to offshore renewable energy development can help to inform natural resource management and project planning and permitting decisions.

Fact Sheet↗
USGS1991

[Book review] Birds of Malheur National Wildlife Refuge, Oregon

Although John Warham has worked for at least 40 years on procellariids, this book is much more than just a summary of a distinguished research career. It is a useful synthesis of the vast and often obscure literature on the more than 100 species of shearwaters, petrels, albatrosses, and fulmars that comprise the avian order with the widest range of body mass (19.5 g to 8.7 kg) and widest distribution, throughout the world's oceans, from the tropics to open leads in polar ice packs. The order's literary credentials are also impressive, with contributions from Dionysus (200 AD), St. Augustine, and Cole- ridge (not cited). Warham has also unearthed useful references from journals not examined by many ornithologists, such as Bocagiana , Il-Merill , and the Journal of the Manx Museum . He also appears to have done a good job of covering the Japanese-language literature.

The Auk↗
USGS1996

The relevance of the Mediterranean Region to colonial waterbird conservation

The Mediterranean Sea is the largest partially enclosed sea in the world and provides habitat to more than 100 species of waterbirds from the Palearctic-North African-Middle Eastern regions. Even though the Mediterranean suffers from pollution, has little tidal influence, and is oligotrophic, more than half of the western Palearctic populations of numerous waterfowl species winter in the region. Thirty-three species of colonial waterbirds breed along the 46,000 km Mediterranean coastline with nine species considered threatened or endangered, mostly because of wetland loss and degradation. The long history of human activity and scientific investigations in the region has taught some valuable lessons. In the area of colonial waterbird biology and conservation, we have learned important lessons about the value of long-term monitoring and research on selected populations. From marking studies of Greater Flamingos (Phoenicopterus ruber roseus) and Little Egrets (Egretta garzetta) results have been used to derive useful information about metapopulation dynamics. Involvement of both African and European biologists allowed year-round Studies of these species that yielded valuable spin-offs for training in avian and wetland conservation. We have also learned the value of man-made wetlands as feeding and nesting sites for some colonial waterbirds. Careful evaluations of the habitat quality of different types of wetlands are required, as in contaminant levels such as lead shot and pesticides. Wetland conservationists have also learned from some instructive mistakes. Dam construction and agricultural incentive programs sponsored by the European Community, the World Bank, and others from the past have largely ignored impacts on wetlands and wildlife. In some areas, economic ventures such as aquaculture operations and salt mining have not involved waterbird habitat needs in their planning. Research and conservation needs include: (1) establishing regional monitoring programs and data banks for seabirds, wading birds, ducks, and geese; (2) implementing a wetland inventory for many Countries with little quantitative data on wetlands; (3) improving habitat quality assessments; (4) improving relationships with industry, the private citizenry, and government officials to further an appreciation for the value of wetlands and waterbirds; (5) enhancing training efforts, especially in underdeveloped Countries; (6) evaluating the effects of hunting and other disturbances to nesting and feeding waterbirds in different regions; (7) setting up 'sister-reserve' (twinned) sites in Europe and Africa to foster international linkages and training; and (8) fostering local-regional conservation programs to preserve reed beds, wet woodlots, and other key habitats.

Book chapter↗
USGS2018

Decision making for mitigating wildlife diseases: From theory to practice for an emerging fungal pathogen of amphibians

Conservation science can be most effective in its decision‐support role when seeking answers to clearly formulated questions of direct management relevance. Emerging wildlife diseases, a driver of global biodiversity loss, illustrate the challenges of performing this role: in spite of considerable research, successful disease mitigation is uncommon. Decision analysis is increasingly advocated to guide mitigation planning, but its application remains rare. Using an integral projection model, we explored potential mitigation actions for avoiding population declines and the ongoing spatial spread of the fungus Batrachochytrium salamandrivorans ( Bsal ). This fungus has recently caused severe amphibian declines in north‐western Europe and currently threatens Palearctic salamander diversity. Available evidence suggests that a Bsal outbreak in a fire salamander ( Salamandra salamandra ) population will lead to its rapid extirpation. Treatments such as antifungals or probiotics would need to effectively interrupt transmission (reduce probability of infection by nearly 90%) in order to reduce the risk of host extirpation and successfully eradicate the pathogen. Improving the survival of infected hosts is most likely to be detrimental as it increases the potential for pathogen transmission and spread. Active removal of a large proportion of the host population has some potential to locally eradicate Bsal and interrupt its spread, depending on the presence of Bsal reservoirs and on the host's spatial dynamics, which should therefore represent research priorities. Synthesis and applications . Mitigation of Batrachochytrium salamandrivorans epidemics in susceptible host species is highly challenging, requiring effective interruption of transmission and radical removal of host individuals. More generally, our study illustrates the advantages of framing conservation science directly in the management decision context, rather than adapting to it a posteriori .

Journal of Applied Ecology↗
USGS2004

Wildfire, fuels reduction, and herpetofaunas across diverse landscape mosaics in northwestern forests

The herpetofauna (amphibians and reptiles) of northwestern forests (U.S.A.) is diverse, and many species are locally abundant. Most forest amphibians west of the Cascade Mountain crest are associated with cool, cascading streams or coarse woody material on the forest floor, which are characteristics of mature forests. Extensive loss and fragmentation of habitat resulted from logging across approximately 50% of old-growth forests in northern California and approximately 80% of stands in Oregon and Washington. There is a complex landscape mosaic and overlap of northern and southern biotic elements in the Klamath-Siskiyou Region along the Oregon and California border, creating a biodiversity hotspot. The region experiences many low-severity fires annually, punctuated by periodic major fires, including the Biscuit fire, the largest in North America in 2002. In the fire's northern portion, severe fire occurred on >50% of stands of young, managed trees but on only about 25–33% of old-growth stands. This suggests that the legacy of timber harvest may produce fire-prone stands. Calls for prescribed fire and thinning to reduce fuel loads will remove large amounts of coarse woody material from forests, which reduces cover for amphibians and alters nutrient inputs to streams. Our preliminary evidence suggests no negative effects of wildfire on terrestrial amphibians, but stream amphibians decrease following wildfire. Most reptiles are adapted to open terrain, so fire usually improves their habitat. Today, the challenge is to maintain biodiversity in western forests in the face of intense political pressures designed to 'prevent' catastrophic fires. We need a dedicated research effort to understanding how fire affects biota and to proactively investigate outcomes of fuel-reduction management on wildlife in western forests.

California, Oregon, Washington↗
USGS1997

Grizzly bear predation rates on caribou calves in northeastern Alaska

During June 1993 and 1994, 11 radiocollared and 7 unmarked grizzly bears (Ursus arctos) were monitored visually (observation) from fixed-wing aircraft to document predation on calves of the Porcupine Caribou (Rangifer tarandus) Herd (PCH) in northeastern Alaska. Twenty-six (72%) grizzly bear observations were completed (???60 min) successfully (median duration = 180 min; ??95% CI = 136-181 min; range = 67-189 min) and 10 were discontinued (duration ???24 min) due to disturbance to the bear, or unfavorable weather conditions. Of the 26 successfully completed observations, 15 (58%) included predatory activity (encounter) directed at caribou calves and 8 (31%) included kills. Of 32 encounters, 9 resulted in kills, for a success rate of 28%. The median duration of encounters was 1 minute (??95% CI = 1-2 min; range = 1-6 min; n = 32;), and the median time spent at a kill was 14 minutes (??95% CI = 9-23 min; range = 6-56 min; n = 9). Sows with young (n = 4) killed more frequently (75%; P = 0.0178) than barren sows, boars, and consorting pairs combined (17%; n = 18). Estimated kill rate was highest for sows with young (6.3 kills/bear/day; n = 4), followed by barren sows (4.6 kills/bear/day; n = 5), boars (1.9 kills/bear/day; n = 5), and, finally, consorting pairs (1.0 kills/bear/day; n = 8). Estimated kill rate obtained via conventional radiotracking point surveys (4.8 kills/bear/day) was higher than that obtained via concurrent bear observations (3.1 kills/bear/day). Our research provides baseline estimates of predation rates by grizzly bears on caribou calves that will enhance the capability of wildlife professionals in managing populations of both predators and their prey.

Journal of Wildlife Management↗
USGS2008

Hepatic minerals of white-tailed and mule deer in the southern Black Hills, South Dakota

Because there is a paucity of information on the mineral requirements of free-ranging deer, data are needed from clinically healthy deer to provide a basis for the diagnosis of mineral deficiencies. To our knowledge, no reports are available on baseline hepatic mineral concentrations from sympatric white-tailed deer (Odocoileus virginianus) and mule deer (Odocoileus hemionus) using different habitats in the Northern Great Plains. We assessed variation in hepatic minerals of female white-tailed deer (n=42) and mule deer (n=41). Deer were collected in February and August 2002 and 2003 from study areas in Custer and Pennington Counties, South Dakota, in and adjacent to a wildfire burn. Hepatic samples were tested for levels (parts per million; ppm) of aluminum (Al), antimony (Sb), arsenic (As), barium (Ba), boron (B), cadmium (Cd), calcium (Ca), chromium (Cr), cobalt (Co), copper (Cu), iron (Fe), lead (Pb), magnesium (Mg), manganese (Mn), mercury (Hg), molybdenum (Mo), nickel (Ni), phosphorus (P), potassium (K), selenium (Se), sodium (Na), sulfur (S), thalium (T1), and zinc (Zn). We predicted that variability in element concentrations would occur between burned and unburned habitat due to changes in plant communities and thereby forage availability. We determined that Zn, Cu, and Ba values differed (P???0.05) between habitats. Because of the nutritional demands of gestation and lactation, we hypothesized that elemental concentrations would vary depending on reproductive status; Cd, Cu, Ca, P, Mn, Mo, Na, and Zn values differed (P???0.05) by reproductive status. We also hypothesized that, due to variation in feeding strategies and morphology between deer species, hepatic elemental concentrations would reflect dietary differences; Ca, Cu, K, Co, Mo, Se, and Zn differed (P???0.05) between species. Further research is needed to determine causes of variation in hepatic mineral levels due to habitat, reproductive status, and species. ?? Wildlife Disease Association 2008.

Journal of Wildlife Diseases↗
USGS2026

Coastal barrier resilience and resistance: Analysis and metrics for characterizing coastal state

Barrier islands are shaped by a variety of short- and long-term environmental processes such as storms and relative sea-level rise. These islands, found along the estuarine-marine interface, provide ecosystem services including storm surge and wave attenuation, erosion protection to inland marshes, habitat for fish and wildlife, and recreation. Natural resource managers require actionable information on how barrier island resilience and resistance changes over time to understand how an island’s current state relates to past conditions and to inform restoration prioritization and implementation. The U.S. Geological Survey and The Water Institute collaborated on a study to develop indicators of resilience and resistance for barrier islands in Louisiana. Here, resilience captures island persistence on yearly to decadal time scales, and resistance captures persistence on event time scales of days to weeks. The indicators fall in two categories: Tier 1 Screening Metrics, that can be readily calculated from available data, are easily interpretable as an evaluation of barrier condition, and provide a high-level snapshot of overall barrier resilience and resistance; and Tier 2 Analysis Metrics, which are detailed metrics that required specialized analysis and interpretation and are more applicable to answering specific questions managers may have about barrier state. The research team derived Tier 1 resilience indicators from subaerial land and vegetation cover calculated from publicly available maps and products based on satellite imagery. By benchmarking the total land and vegetation extent against their respective historical maxima, this metric provides a snapshot of an island’s current state in the context of its long-term trajectory. The research team developed Tier 1 resistance indicators based on subaerial island configuration and water level recurrence as a proxy for evaluating island resistance to storms, which are the primary driver of short-term change. These Tier 1 metrics can be analyzed over time to provide a high-level assessment of how an island’s resistance decreases because of elevation loss or sea-level rise or increases due to restoration or natural recovery. The research team developed Tier 2 resilience and resistance indicators and associated analyses to provide detailed information for specific time periods or applications (e.g., wildlife management). These metrics include habitat coverage from high-resolution maps, which show composition changes over time to capture the evolving resilience of specific habitat types; high tide flooding analysis, which evaluate island area relative to specified flooding thresholds to characterize resistance in the short-term or, if analyzed over time, indicate changes in resilience; and hypsometric curve analysis, which allows managers to evaluate island area changes above their own elevation benchmarks of interest and similarly characterize resistance in the short-term or indicate changes in resilience if assessed over time. The research team calculated Tier 1 metrics of the barrier islands and headlands along the coast of Louisiana for the period of 1984 through 2021 and Tier 2 metrics for select times during that period depending on data available and quality. The results were captured in a report card for each barrier, which also includes an overview of the metrics and their interpretation; a restoration and storm history; and Tier 1 and Tier 2 metric analysis, including benchmarking against coastwide and regional values as well as to an island’s pre-restoration trajectory. These report cards provide a readily digestible synthesis of barrier condition and trajectory that coastal managers can use to support restoration prioritization and other decisions.

Louisiana↗
USGS2026

Final project peport for “Mapping riparian vegetation response to climate change on the San Carlos Apache Reservation and Upper Gila River watershed to inform restoration priorities: 1935 to present – Phase 2: Focus on tamarisk vegetation”

Riparian ecosystems play a critical role in supporting wildlife habitats, maintaining water quality, and sustaining ecological resilience in arid landscapes. In the Upper Gila River level-4 Hydrologic Unit Code (HUC-4; Identification Number – 1504) watershed of Arizona and New Mexico, and across areas of the San Carlos Apache Tribe of the San Carlos Apache Reservation (hereafter, Tribe/Tribal – entity; or Reservation - place), riparian ecosystems have been substantially altered by the widespread expansion of tamarisk ( Tamarix spp.), an invasive and non-native riparian species. Tamarisk has high water use and increased flammability, making it a growing concern as droughts intensify across the southwestern United States (U.S.). Recent research indicates that tamarisk is increasingly stressed under prolonged drought conditions, which can elevate wildfire risk and further degrade riparian habitat. In response, the U.S. Geological Survey (USGS) Western Geographic Science Center, in collaboration with the Tribe, developed remote sensing–based tools to map riparian vegetation composition and monitor vegetation condition over time. These tools enable accurate identification of tamarisk extent, detection of vegetation stress, and comparison with native species such as cottonwood and willow. This information directly supports restoration and management actions, including targeted tamarisk removal, protection of endangered species habitat, and prioritization of areas for native vegetation recovery. The tools also provide insight into how riparian vegetation responds to changing climate and hydrologic conditions, strengthening long-term planning for riparian forest management. Findings from this work demonstrate that riparian vegetation responses vary across river systems, indicating differences in plant composition and hydro-climatic conditions. Tamarisk on both the Gila and San Carlos Rivers generally exhibit greater declines in greenness in response to higher temperature as well as lower precipitation and river flow, while cottonwood ( Populus fremontii ) and willow (Salix spp.) are particularly sensitive to changes in discharge along the San Carlos River and respond more directly to both high and low flows, with more moderate responses to precipitation and temperature. By providing actionable, science-based information, this research supports climate adaptation planning, wildfire risk reduction, and improved riparian ecosystem health, with benefits that extend beyond the Reservation to regional water and wildlife conservation efforts.

Arizona, New Mexico↗
USGS2024

Self-determination theory as an alternate conceptual foundation for motivation in natural resource research

Motivation is a topic that receives substantial interest across the social sciences. However, in the human dimensions of natural resource literature, scholars have primarily treated motivation as a construct narrowly defined by the individual’s desired goal state. In contrast, self-determination theory (SDT) suggests that multiple forms of motivation can influence levels of self-determination, integration of identities, and subsequent behavioral intentions, and has been utilized in multiple realms to understand human behavior. SDT forms a consistent and well-understood mechanism for human psychological development and optimal function and allows for the formulation of out-of-sample prediction, a cornerstone of science. In this manuscript, we review the basic theories that make up SDT and provide insight for its application to human dimensions of natural resource research.

Human Dimensions of Wildlife: An International Jou↗
USGS2012

Autumn migration of of Mississippi Flyway mallards as determined by satellite telemetry

We used satellite telemetry to study autumn migration timing, routes, stopover duration, and final destinations of mallards Anas platyrhynchos captured the previous spring in Arkansas from 2004 to 2007. Of those mallards that still had functioning transmitters on September 15 ( n = 55), the average date when autumn migration began was October 23 (SE = 2.62 d; range = September 17–December 7). For those mallards that stopped for >1 d during migration, the average stopover length was 15.4 d (SE = 1.47 d). Ten mallards migrated nonstop to wintering sites. The eastern Dakotas were a heavily utilized stopover area. The total distance migrated per mallard averaged 1,407 km (SE = 89.55 km; range = 142–2,947 km). The average time spent on migration per individual between September 15 and December 15 was 27 d (SE = 2.88 d; range = 2–84 d). The state where most mallards were located on December 15 was Missouri (11) followed by Arkansas (8), while 5 mallards were still in Canada, and only 8 of 43 females and 0 of 10 males were present in Arkansas. The eastern Dakotas are a heavily utilized migration stopover for midcontinent mallards that may require more attention for migration habitat management. The reasons for so few mallards, especially male mallards, returning to Arkansas the following year deserves further research. .

Arkansas↗
USGS1980

Computer simulation models as tools for identifying research needs: A black duck population model

Existing data on the mortality and production rates of the black duck (Anas rubripes) were used to construct a WATFIV computer simulation model. The yearly cycle was divided into 8 phases: hunting, wintering, reproductive, molt, post-molt, and juvenile dispersal mortality, and production from original and renesting attempts. The program computes population changes for sex and age classes during each phase. After completion of a standard simulation run with all variable default values in effect, a sensitivity analysis was conducted by changing each of 50 input variables, 1 at a time, to assess the responsiveness of the model to changes in each variable. Thirteen variables resulted in a substantial change in population level. Adult mortality factors were important during hunting and wintering phases. All production and mortality associated with original nesting attempts were sensitive, as was juvenile dispersal mortality. By identifying those factors which invoke the greatest population change, and providing an indication of the accuracy required in estimating these factors, the model helps to identify those variables which would be most profitable topics for future research.

Transactions of the Northeast Section of the Wildl↗
USGS2001

Wetland restoration in the Prairie Pothole Region of North America: A literature review

The landscape of the prairie pothole region (PPR), a grassland biome of the northern U.S. Great Plains and parts of Canada, has been greatly altered by land use since the 1800's. Conversion of grassland to cropland and drainage of wetlands has resulted in wetland losses of up to 90% in some areas. Besides the area providing critical habitat to various wildlife, breeding waterfowl, and migratory birds, its seasonal wetlands support diverse plant and invertebrate communities, play a role in flood attenuation, act as traps for nutrients. store and recharge groundwater. and are valued recreational lands. Most of the restoration of prairie potholes has only occurred since the 1980's, with few follow-up studies performed and little postrestoration monitoring of these restorations. Monitoring and research of wetland restoration in the PPR is less common relative to the number of postrestoration studies done on other wetland types in the United States. This report is a synthesis of current knowledge of restored prairie pothole wetlands and makes suggestions for future wetland restoration-related research. In order to determine the benefits of restored wetlands, it is important to better understand how closely restored wetlands in the PPR resemble their natural analogues in terms of functions and values. The report categorizes PPR literature into five general sections: wildlife, vegetation, invertebrates, fish, and physical and chemical characteristics of restored wetlands. Each of these five sections has a summary of research and is divided into two parts: an overview of research and findings and regional case studies. Most PPR studies have focused on bird and plant communities, whereas research done on the functions of restored wetlands and studies concerning less visible fauna and physical and chemical characteristics are scarce. In addition, there is a scarcity of research in the western and northern portions or the PPR; most studio to date have been conducted in Iowa. Minnesota, or South Dakota. Key Words: wetland restoration, prairie pothole region, PPR, literature review, wetland functions and values. postrestoration studies

Biological Science Report↗
USGS2008

Wyoming Landscape Conservation Initiative Science Workshop Proceedings, May 15-17, 2007

The U.S. Geological Survey (USGS) hosted a Wyoming Landscape Conservation Initiative (WLCI) Science Workshop at the University of Wyoming on May 15, 16, and 17, 2007. The goal of the workshop was to gather information from stakeholders about research needs and existing data resources to help develop the USGS WLCI science plan. The workshop focused on six research and management needs identified by WLCI partners prior to the workshop: *evaluate the cumulative effects of development activities; *identify key drivers of change; *identify condition and distribution of key wildlife species, habitat, and species habitat requirements; *evaluate wildlife and livestock responses to development; *develop an integrated inventory and monitoring strategy; and *develop a data clearinghouse and an information-management framework. These topics correlated to six plenary panels and discussions and six breakout sessions. Several collective needs were identified: *create a long-term, accessible information database; *identify key habitats, indicator species; *collect and research missing critical baseline data; *begin on-the-ground projects as soon as possible; and *implement a monitoring program to assist with adaptive management techniques. Several concerns were expressed repeatedly: *secure adequate and long-term funding; *meeting the WLCI workload with agencies that are already understaffed; *assess cumulative effects as an analysis approach; *perform offsite mitigation in a way that is valuable and effective; *focus all research on providing practical applications; and *involve the public in WLCI proceedings.

Scientific Investigations Report↗
USGS2025

Rapid risk assessment framework to estimate potential for spillback at human-wildlife interfaces

More than 60% of emerging infectious diseases of humans have a wildlife origin, and when these diseases spread through human populations to new geographical areas, there is a considerable risk of spillback from humans to wildlife species. Spillback events can have severe consequences for wildlife populations, where the disease may cause morbidity and mortality, and human populations, where the establishment in wildlife may lead to prolonged transmission or new exposures in humans. Mitigating these consequences requires identifying the key risk factors that lead to human–wildlife transmission events and implementing risk-reducing actions, a challenge given that cross-species transmission events are rare and often data deficient. To identify potential species and locations that are most likely to lead to these rare events, we developed a spatially explicit, rapid risk assessment framework that incorporates three components of the spillback process: wildlife susceptibility, wildlife exposure, and pathogen introduction pressure. To demonstrate the broad applicability of our framework, we conducted a rapid risk assessment on two recent emerging zoonotic pathogens in humans, severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) and mpox, to determine the relative spillback risk to wild mammalian species in the continental United States. The rapid risk assessment identified both species and locations with higher than expected spillback risk, providing managers and researchers with valuable information to prioritize surveillance and risk-mitigation actions. Our framework represents a rapid and flexible approach to assess the risks of spillback to wildlife populations during rapidly evolving zoonotic disease outbreaks.

Transboundary and Emerging Diseases↗
USGS2020

Mercury bioaccumulation in freshwater fishes of the Chesapeake Bay watershed

Chemical contaminants are a threat to the Chesapeake Bay watershed, with mercury (Hg) among the most prevalent causes of impairment. Despite this, large-scale patterns of Hg concentrations, and the potential risks to fish, wildlife, and humans across the watershed, are poorly understood. We compiled fish Hg data from state monitoring programs and recent research efforts to address this knowledge gap and provide a comprehensive assessment of fish Hg concentrations in the watershed’s freshwater habitats. The resulting dataset consisted of nearly 8000 total Hg (THg) concentrations from 600 locations. Across the watershed, fish THg concentrations spanned a 44-fold range, with mean concentrations varying by 2.6- and 8.8-fold among major sub-watersheds and individual 8-digit hydrological units, respectively. Although, mean THg concentrations tended to be moderate, fish frequently exceeded benchmarks for potential adverse health effects, with 45, 48, and 36% of all samples exceeding benchmarks for human, avian piscivore, and fish risk, respectively. Importantly, the percentage of fish exceeding these benchmarks was not uniform among species or locations. The variation in fish THg concentrations among species and sites highlights the roles of waterbody, landscape, and ecological processes in shaping broad patterns in Hg risk across the watershed. We outline an integrated Hg monitoring program that could identify key factors influencing Hg concentrations across the watershed and facilitate the implementation of management strategies to mitigate the risks posed by Hg.

New York, Pennsylvania, Maryland, Delaware, Virgin↗
USGS2023

Exchange of carbapenem-resistant Escherichia coli Sequence Type 38 intercontinentally and among wild bird, human, and environmental niches

Carbapenem-resistant Enterobacteriaceae (CRE) are a global threat to human health and are increasingly being isolated from nonclinical settings. OXA-48-producing Escherichia coli sequence type 38 (ST38) is the most frequently reported CRE type in wild birds and has been detected in gulls or storks in North America, Europe, Asia, and Africa. The epidemiology and evolution of CRE in wildlife and human niches, however, remains unclear. We compared wild bird origin E. coli ST38 genome sequences generated by our research group and publicly available genomic data derived from other hosts and environments to (i) understand the frequency of intercontinental dispersal of E. coli ST38 clones isolated from wild birds, (ii) more thoroughly measure the genomic relatedness of carbapenem-resistant isolates from gulls sampled in Turkey and Alaska, USA, using long-read whole-genome sequencing and assess the spatial dissemination of this clone among different hosts, and (iii) determine whether ST38 isolates from humans, environmental water, and wild birds have different core or accessory genomes (e.g., antimicrobial resistance genes, virulence genes, plasmids) which might elucidate bacterial or gene exchange among niches. Our results suggest that E. coli ST38 strains, including those resistant to carbapenems, are exchanged between humans and wild birds, rather than separately maintained populations within each niche. Furthermore, despite close genetic similarity among OXA-48-producing E. coli ST38 clones from gulls in Alaska and Turkey, intercontinental dispersal of ST38 clones among wild birds is uncommon. Interventions to mitigate the dissemination of antimicrobial resistance throughout the environment (e.g., as exemplified by the acquisition of carbapenem resistance by birds) may be warranted.

Applied and Environmental Microbiology↗
USGS2006

Detection probabilities and site occupancy estimates for amphibians at Okefenokee National Wildlife Refuge

We conducted an amphibian inventory at Okefenokee National Wildlife Refuge from August 2000 to June 2002 as part of the U.S. Department of the Interior's national Amphibian Research and Monitoring Initiative. Nineteen species of amphibians (15 anurans and 4 caudates) were documented within the Refuge, including one protected species, the Gopher Frog Rana capito. We also collected 1 y of monitoring data for amphibian populations and incorporated the results into the inventory. Detection probabilities and site occupancy estimates for four species, the Pinewoods Treefrog (Hyla femoralis), Pig Frog (Rana grylio), Southern Leopard Frog (R. sphenocephala) and Carpenter Frog (R. virgatipes) are presented here. Detection probabilities observed in this study indicate that spring and summer surveys offer the best opportunity to detect these species in the Refuge. Results of the inventory suggest that substantial changes may have occurred in the amphibian fauna within and adjacent to the swamp. However, monitoring the amphibian community of Okefenokee Swamp will prove difficult because of the logistical challenges associated with a rigorous statistical assessment of status and trends.

American Midland Naturalist↗