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Distributed geospatial model sharing based on open interoperability standards

Numerous geospatial computational models have been developed based on sound principles and published in journals or presented in conferences. However modelers have made few advances in the development of computable modules that facilitate sharing during model development or utilization. Constraints hampering development of model sharing technology includes limitations on computing, storage, and connectivity; traditional stand-alone and closed network systems cannot fully support sharing and integrating geospatial models. To address this need, we have identified methods for sharing geospatial computational models using Service Oriented Architecture (SOA) techniques and open geospatial standards. The service-oriented model sharing service is accessible using any tools or systems compliant with open geospatial standards, making it possible to utilize vast scientific resources available from around the world to solve highly sophisticated application problems. The methods also allow model services to be empowered by diverse computational devices and technologies, such as portable devices and GRID computing infrastructures. Based on the generic and abstract operations and data structures required for Web Processing Service (WPS) standards, we developed an interactive interface for model sharing to help reduce interoperability problems for model use. Geospatial computational models are shared on model services, where the computational processes provided by models can be accessed through tools and systems compliant with WPS. We developed a platform to help modelers publish individual models in a simplified and efficient way. Finally, we illustrate our technique using wetland hydrological models we developed for the prairie pothole region of North America.

Journal of Remote Sensing

Precise estimation of repeating earthquake moment: Example from parkfield, california

We offer a new method for estimating the relative size of repeating earthquakes using the singular value decomposition (SVD). This method takes advantage of the highly coherent waveforms of repeating earthquakes and arrives at far more precise and accurate descriptions of earthquake size than standard catalog techniques allow. We demonstrate that uncertainty in relative moment estimates is reduced from ??75% for standard coda-duration techniques employed by the network to an uncertainty of ??6.6% when the SVD method is used. This implies that a single-station estimate of moment using the SVD method has far less uncertainty than the whole-network estimates of moment based on coda duration. The SVD method offers a significant improvement in our ability to describe the size of repeating earthquakes and thus an opportunity to better understand how they accommodate slip as a function of time.

Bulletin of the Seismological Society of America

Sampling protocol for monitoring abiotic and biotic characteristics of mountain ponds and lakes

This document describes field techniques and procedures used for sampling mountain ponds and lakes. These techniques and procedures will be used primarily to monitor, as part of long-term programs in National Parks and other protected areas, the abiotic and biotic characteristics of naturally occurring permanent montane lentic systems up to 75 ha in surface area. However, the techniques and procedures described herein also can be used to sample temporary or ephemeral montane lentic sites. Each Standard Operating Procedure (SOP) section addresses a specific component of the limnological investigation, and describes in detail field sampling methods pertaining to parameters to be measured for each component.

Techniques and Methods

User's guide to SAC, a computer program for computing discharge by slope-area method

This user's guide contains information on using the slope-area program, SAC. SAC can be used to compute peak flood discharges from measurements of high-water marks along a stream reach. The Slope-area method used by the program is the U.S. Geological Survey (USGS) procedure presented in Techniques of Water Resources Investigations of the U.S. Geological Survey, beok 3, chapter A2, "Measurement of Peak Discharge by the Slope-Area Method." The program uses input files that have formats compatible with those used by the water-surface profile program (WSPRO) described in the Federal Highways Administration publication FHWA-IP-89-027. The guide briefly describes the slope-area method documents the input requirements and the output produced, and demonstrates use of SAC.

Open-File Report

Hydrogeophysical methods for analyzing aquifer storage and recovery systems

Hydrogeophysical methods are presented that support the siting and monitoring of aquifer storage and recovery (ASR) systems. These methods are presented as numerical simulations in the context of a proposed ASR experiment in Kuwait, although the techniques are applicable to numerous ASR projects. Bulk geophysical properties are calculated directly from ASR flow and solute transport simulations using standard petrophysical relationships and are used to simulate the dynamic geophysical response to ASR. This strategy provides a quantitative framework for determining site‐specific geophysical methods and data acquisition geometries that can provide the most useful information about the ASR implementation. An axisymmetric, coupled fluid flow and solute transport model simulates injection, storage, and withdrawal of fresh water (salinity ∼500 ppm) into the Dammam aquifer, a tertiary carbonate formation with native salinity approximately 6000 ppm. Sensitivity of the flow simulations to the correlation length of aquifer heterogeneity, aquifer dispersivity, and hydraulic permeability of the confining layer are investigated. The geophysical response using electrical resistivity, time‐domain electromagnetic (TEM), and seismic methods is computed at regular intervals during the ASR simulation to investigate the sensitivity of these different techniques to changes in subsurface properties. For the electrical and electromagnetic methods, fluid electric conductivity is derived from the modeled salinity and is combined with an assumed porosity model to compute a bulk electrical resistivity structure. The seismic response is computed from the porosity model and changes in effective stress due to fluid pressure variations during injection/recovery, while changes in fluid properties are introduced through Gassmann fluid substitution.

Groundwater

Artisanal mining river dredge detection using SAR: A method comparison

Challenges exist in monitoring artisanal and small-scale mining (ASM) activities, given their dynamic and often informal nature. ASM takes form through various techniques and scales, including riverine dredging, which often targets the abundant alluvial gold deposits in South America. Remote sensing offers a solution to improve data collection, regulation, and monitoring of the more mobile and elusive ASM activities and their impacts. Mapping ASM riverine dredges using Synthetic Aperture Radar (SAR) is one of the application areas least explored. Three semi-automated detection approaches using Sentinel-1 SAR are compared on their ability to identify dredges with minimal false positives. The methods are: (i) Search for Unidentified Maritime Objects (SUMO), an established method for large ocean ship detection; and two techniques specifically developed for riverine environments that are introduced in this paper: (ii) a local detection method; and (iii) a global threshold method. A visual interpretation of SAR data with the inclusion of optical high-resolution data are used to generate a validation dataset. Results show it is possible to semi-automatically detect riverine dredge using SAR and that a local detection method provides the best balance between sensitivity and precision and has the lowest risk of error. Future improvements may consider further automation, more discriminatory variables, and analyzing the methods in different environments and at higher spatial resolutions.

Remote Sensing

Liquid chromatographic method for determining the concentration of bisazir in water

Barrier dams, traps, and lampricides are the techniques currently used by the Great Lakes Fishery Commission to control sea lampreys {Petromyzon marinug) in the Great Lakes. To augment these control techniques, a sterile-male-release research program was initiated at the Lake Huron Biological Station. Male sea lampreys were sterilized by intraperitoneal injection of the chemical sterilant P,P-bis(1-aziridinyl)- N methylphosphinothioic amide (bisazir). An analytical method was needed to quantitate the concentration of bisazir in water and to routinely verify that bisazir (>25 μg/L) does not persist in the treated effluent discharged from the sterilization facility to Lake Huron. A rapid, accurate, and sensitive liquid chromatographic (LC) method was developed for determining bisazir in water. Bisazir was dissolved in Lake Huron water; extracted and concentrated on a C 18 solid-phase extraction column; eluted with methanol; and quantitated by reversed-phase LC using a Cis column, amobile phase of 70% water and 30% methanol (v/v), and UV detection (205 nm). Bisazir retention time was 7-8 min; total run time was about 20 min. Method detection limit for bisazir dissolved in Lake Huron water was about 15 μg/L. Recovery from Lake Huron water fortified with bisazir at 100 μg/L was 94% (95% confidence interval, 90.2-98.2%).

Journal of AOAC International

Evaluation of laser ablation double-focusing SC-ICPMS for “common” lead isotopic measurements in silicate glasses and mineral

An analytical method for the in situ measurement of “common” Pb isotope ratios in silicate glasses and minerals using a 193-nm excimer laser ablation (LA) system with a double-focusing single-collector (SC)-ICPMS is presented and evaluated as a possible alternative to multiple-collector (MC)-ICPMS. This LA-SC-ICPMS technique employs fast-scanning ion deflectors to sequentially place a series of flat-topped isotope peaks into a single ion-counting detector at a fixed accelerating voltage and magnetic field strength. Reference materials (including NIST, MPI-DING, and USGS glasses) are used to identify two analytical artifacts on the Pb isotope ratios (expressed here as heavier/lighter isotopes) when corrected for mass bias relative to NIST SRM610. The first artifact is characterized by anomalously low Pb isotope ratios (~0.1%/AMU) when SRM610 is analyzed in raster mode as an unknown at small spot sizes (<25 µm), which may indicate that (1) SRM610 is isotopically heterogeneous on a small length scale and/or (2) there is a non-spectral matrix effect on the Pb isotope ratios related to differences in spot size. The second artifact is characterized by anomalously high Pb isotope ratios (<0.1%/AMU) for NIST SRM612 (in raster mode) and some Fe-rich glass reference materials (BCR-2G, GOR132-G, and T1-G). These offsets are thought to be caused by one or more non-spectral matrix effects related to differences in the ablation behavior, composition, or physical properties of these reference materials compared to the bracketing SRM610 standard. The precision (±2SD) of our LA-SC-ICPMS Pb isotopic measurements is similar to ( 207 Pb/ 206 Pb and 208 Pb/ 206 Pb, or 20X Pb/ 206 Pb) or better than ( 206 Pb/ 204 Pb, 207 Pb/ 204 Pb, and 208 Pb/ 204 Pb, or 20X Pb/ 204 Pb) a series of published studies that used a different type of SC-ICPMS and obtained a factor of ~3-4 higher sensitivity for Pb. An increase in the sensitivity of our LA-SC-ICPMS would likely improve the precision of the 20X Pb/ 206 Pb and 20X Pb/ 204P b ratios for low-Pb materials (<5 ppm), possibly making the technique broadly similar to LA-MC-ICPMS (particularly compared to methods that rely upon at least one ion-counting detector). Further improvement in the precision of the 20X Pb/ 206 Pb and 20X Pb/ 204 Pb ratios for high-Pb materials (>5 ppm) by LA-SC-ICPMS is unlikely, and in this case, LA-MC-ICPMS remains the preferable analytical technique.

Journal of Analytical Atomic Spectrometry

Borehole activation analysis by delayed and capture gamma rays using a 252Cf neutron source

Theoretical analysis and experimental comparison of the radiative capture and delayed gamma-ray activation techniques indicate the latter to be more efficient for the detection of copper, whereas the radiative capture method is preferable for nickel. A conservative lower detection limit for both copper and nickel is '-0.5%. Borehole spectra by both techniques were made in a copper- and nickel-bearing gabbro, utilizing a Ge(Li) propane-cooled detector. Al, Mn, Na, Mg, Cu, and V were readily activated and detected by the delayed method. H, Fe, Si, and Ni were not usually present in the delayed spectra but they responded well in the capture mode. It is shown that the borehole sonde can be configured to permit simultaneous delayed and capture spectra, permitting detection of all of these elements. Simulated borehole experiments indicate that, in the delayed gamma-ray mode, an infinite sample is achieved when the ore layer has a vertical thickness of ∼20 cm and a horizontal distance of '10 cm into the wallrock. The depth resolution is thus relatively good but horizontal penetration through the wallrock is limited. © 1972 Society of Economic Geologists, Inc.

Economic Geology

Integrated pest management and allocation of control efforts for vector-borne diseases

Applications of various control methods were evaluated to determine how to integrate methods so as to minimize the number of human cases of vector-borne diseases. These diseases can be controlled by lowering the number of vector-human contacts (e.g., by pesticide applications or use of repellents), or by lowering the proportion of vectors infected with pathogens (e.g., by lowering or vaccinating reservoir host populations). Control methods should be combined in such a way as to most efficiently lower the probability of human encounter with an infected vector. Simulations using a simple probabilistic model of pathogen transmission suggest that the most efficient way to integrate different control methods is to combine methods that have the same effect (e.g., combine treatments that lower the vector population; or combine treatments that lower pathogen prevalence in vectors). Combining techniques that have different effects (e.g., a technique that lowers vector populations with a technique that lowers pathogen prevalence in vectors) will be less efficient than combining two techniques that both lower vector populations or combining two techniques that both lower pathogen prevalence, costs being the same. Costs of alternative control methods generally differ, so the efficiency of various combinations at lowering human contact with infected vectors should be estimated at available funding levels. Data should be collected from initial trials to improve the effects of subsequent interventions on the number of human cases.

Journal of Vector Ecology

Discriminating silt-and-clay from suspended-sand in rivers using side-looking acoustic profilers

The ability to accurately monitor suspended-sediment flux in rivers is needed to support many types of studies, because the sediment that typically travels in suspension affects geomorphology and aquatic habitat in a variety of ways (e.g. bank and floodplain deposition, bar morphology, light penetration and primary productivity, tidal wetland deposition in the context of sea-level rise, sediment-associated contaminants, reservoir sedimentation and potential erosion during dam removal, among others). In addition, human-induced changes to the landscape have resulted in substantially altered suspended-sediment loads (Syvitski et al., 2005). Thus, accurate monitoring of suspended-sediment flux is necessary for informed resource management of rivers. Because of this need, a variety of techniques have been developed and applied for suspendedsediment monitoring. The traditional approach in the United States, which was developed and has been used extensively by the U.S. Geological Survey (USGS), is to collect an isokinetic, velocity-weighted sample from a river cross-section, analyze the sample in the laboratory, and use water-discharge records to compute a record of suspended-sediment flux (Guy, 1969, Guy, 1970, Edwards and Glysson, 1999, Porterfield, 1972). The labor and expense associated with this traditional approach is substantial such that the number of USGS gages reporting daily records of suspended-sediment flux decreased from 364 in 1981 to 120 in 2003 (Osterkamp et al., 2004). Also, the traditional sampling approach is limited with respect to the temporal resolution that can be achieved, thus requiring the use of approximate relations between suspended-sediment concentration and water discharge to fill gaps between samples. To address these limitations, several indirect or "surrogate" measures have been investigated (see e.g. Gray and Gartner, 2009) most notably optical backscatter (i.e. turbidity), laser-diffraction, and acoustic backscatter. These indirect techniques rely on measurements of ancillary properties that correlate with suspended-sediment concentration and particle size and thus require the collection of traditional samples for calibration. Through in situ deployments, these methods can provide the high temporal resolution that cannot be achieved through traditional sampling. Here we focus on the evaluation of acoustic profiling techniques (e.g. acoustic-Doppler sideways-looking profilers, or ADPs). One major advantage of acoustic profiling is the ability to concurrently measure water velocity (using Doppler-shift methods) and suspended-sediment concentration such that suspended-sediment flux can be directly computed using data from a single instrument. Acoustic-Doppler profilers have become popular for measuring water velocity and discharge in rivers, through both moving-boat operations and from fixed deployments such as bank-mounted sideways-looking instruments (Hirsch and Costa, 2004, Muste et al., 2007). The method presented herein is most suited to sideways-looking applications as a complement to the "index velocity" technique, whereby an index velocity from a sideways-looking instrument is related to the cross-section average velocity (determined from moving-boat discharge measurements) as a means for developing a continuous water-discharge record (Ruhl and Simpson, 2005). Topping et al. (2007) presented a method for discriminating silt-and-clay from suspended sand, using single frequency ADPs. This method takes advantage of the relations among acoustic backscatter, sediment-induced acoustic attenuation, suspended-sediment concentration (SSC), and particle size distribution (PSD). Backscatter is the amount of sound scattered back and received at the transducer while sediment-induced attenuation is the amount of sound scattered in other directions and absorbed by the sediment particles. Both of these parameters can be measured with an ADP, and their different dependencies on SSC and PSD allow for the discrimination of suspended silt-and-clay from suspended sand. Topping et al. (2007) describe application of the method at several sites along the Colorado River in Grand Canyon, and herein we present an example application of the technique for the Gunnison River, CO. However, the methods general applicability in rivers has yet to be evaluated due to a lack of concurrent acoustic and sediment data at a range of sites. To this end, the objective of the analysis presented herein is to evaluate the potential general applicability of the method, drawing from the extensive USGS database on SSC and PSD. We refer to it as "potential" general applicability because it relies on the theory underlying the previous empirical results. Use of the theoretical relations is necessary due to the lack of concurrent ADP and SSC/PSD data, but also serves the additional purpose of providing further justification of the empirical calibrations developed for the Colorado and Gunnison Rivers.

Conference Paper

The Uranium-trend dating method: Principles and application for southern California marine terrace deposits

Uranium-trend dating is an open-system method for age estimation of Quaternary sediments, using disequilibrium in the 238U234U230Th decay series. The technique has been applied to alluvium, colluvium, loess, till, and marine sediments. In this study we tested the U-trend dating method on calcareous marine terrace deposits from the Palos Verdes Hills and San Nicolas Island, California. Independent age estimates indicate that terraces in these areas range from ???80 ka to greater than 1.0 Ma. Two low terraces on San Nicolas Island yielded U-trend plots that have a clustered array of points and the ages of these deposits are indeterminate or highly suspect. Middle Pleistocene terraces and one early Pleistocene terrace on San Nicolas Island and all terraces on the Palos Verdes Hills gave reasonably linear U-trend plots and estimated ages that are stratigraphically consistent and in agreement with independent age estimates. We conclude that many marine terrace deposits are suitable for U-trend dating, but U-trend plots must be carefully evaluated and U-trend ages should be consistent with independent geologic control. ?? 1989.

Quaternary International

Improved efficiency of maximum likelihood analysis of time series with temporally correlated errors

Most time series of geophysical phenomena have temporally correlated errors. From these measurements, various parameters are estimated. For instance, from geodetic measurements of positions, the rates and changes in rates are often estimated and are used to model tectonic processes. Along with the estimates of the size of the parameters, the error in these parameters needs to be assessed. If temporal correlations are not taken into account, or each observation is assumed to be independent, it is likely that any estimate of the error of these parameters will be too low and the estimated value of the parameter will be biased. Inclusion of better estimates of uncertainties is limited by several factors, including selection of the correct model for the background noise and the computational requirements to estimate the parameters of the selected noise model for cases where there are numerous observations. Here, I address the second problem of computational efficiency using maximum likelihood estimates (MLE). Most geophysical time series have background noise processes that can be represented as a combination of white and power-law noise, 1 / f &#x03B1; "> 1 / f α 1/fα with frequency, f . With missing data, standard spectral techniques involving FFTs are not appropriate. Instead, time domain techniques involving construction and inversion of large data covariance matrices are employed. Bos et al. (J Geod, 2013 . doi: 10.1007/s00190-012-0605-0 ) demonstrate one technique that substantially increases the efficiency of the MLE methods, yet is only an approximate solution for power-law indices >1.0 since they require the data covariance matrix to be Toeplitz. That restriction can be removed by simply forming a data filter that adds noise processes rather than combining them in quadrature. Consequently, the inversion of the data covariance matrix is simplified yet provides robust results for a wider range of power-law indices.

Journal of Geodesy

Use of stable sulphur isotopes to monitor directly the behaviour of sulphur in coal during thermal desulphurization

A method has been developed using stable sulphur isotope analyses to monitor the behaviour of sulphur forms in a coal during thermal desulphurization. In this method, the natural stable isotopic composition of the pyritic and organic sulphur in coal is used as a tracer to follow their mobility during the desulphurization process. This tracer method is based on the fact that the isotopic compositions of pyritic and organic sulphur are significantly different in some coals. Isotopic results of pyrolysis experiments at temperatures ranging from 350 to 750 °C indicate that the sulphur released with the volatiles is predominantly organic sulphur. The pyritic sulphur is evolved in significant quantities only when pyrolysis temperatures exceed 500 °C. The presence of pyrite seems to have no effect on the amount of organic sulphur evolved during pyrolysis. The chemical and isotopic mass balances achieved from three different samples of the Herrin (No. 6) coal of the Illinois Basin demonstrate that this stable isotope tracer method is quantitative. The main disadvantage of this tracing technique is that not all coals contain isotopically distinct organic and pyritic sulphur.

Illinois, Indiana, Kentucky

Regional regression of flood characteristics employing historical information

Streamflow gauging networks provide hydrologic information for use in estimating the parameters of regional regression models. The regional regression models can be used to estimate flood statistics, such as the 100 yr peak, at ungauged sites as functions of drainage basin characteristics. A recent innovation in regional regression is the use of a generalized least squares (GLS) estimator that accounts for unequal station record lengths and sample cross correlation among the flows. However, this technique does not account for historical flood information. A method is proposed here to adjust this generalized least squares estimator to account for possible information about historical floods available at some stations in a region. The historical information is assumed to be in the form of observations of all peaks above a threshold during a long period outside the systematic record period. A Monte Carlo simulation experiment was performed to compare the GLS estimator adjusted for historical floods with the unadjusted GLS estimator and the ordinary least squares estimator. Results indicate that using the GLS estimator adjusted for historical information significantly improves the regression model.

Journal of Hydrology

Geodetic imaging: Reservoir monitoring using satellite interferometry

Fluid fluxes within subsurface reservoirs give rise to surface displacements, particularly over periods of a year or more. Observations of such deformation provide a powerful tool for mapping fluid migration within the Earth, providing new insights into reservoir dynamics. In this paper we use Interferometric Synthetic Aperture Radar (InSAR) range changes to infer subsurface fluid volume strain at the Coso geothermal field. Furthermore, we conduct a complete model assessment, using an iterative approach to compute model parameter resolution and covariance matrices. The method is a generalization of a Lanczos-based technique which allows us to include fairly general regularization, such as roughness penalties. We find that we can resolve quite detailed lateral variations in volume strain both within the reservoir depth range (0.4-2.5 km) and below the geothermal production zone (2.5-5.0 km). The fractional volume change in all three layers of the model exceeds the estimated model parameter uncertainly by a factor of two or more. In the reservoir depth interval (0.4-2.5 km), the predominant volume change is associated with northerly and westerly oriented faults and their intersections. However, below the geothermal production zone proper [the depth range 2.5-5.0 km], there is the suggestion that both north- and northeast-trending faults may act as conduits for fluid flow.

Geophysical Journal International

A novel method for quantifying streambed penetrability to inform benthic habitat assessment

Objective Penetrability of streambed sediments is important for the ecological functioning of many benthic organisms, yet there is ambiguity in terminology associated with this concept and there is no standardized method of penetrability measurement available to scientists and resource managers. The goal of our study was to better define the terms of compaction and penetrability as they relate to streambed substrate and to advance the measurement techniques for assessing penetrability of bed sediments in gravel-bed streams. Methods We tested the performance of a modified penetrometer method in 12 different substrate configurations in the laboratory and used the data to determine the relationship between penetration depth and substrate characteristics. We then simulated additional sampling effort and used bootstrapping methods to provide guidance on the number of samples required to achieve consistent results. Finally, we tested the device in a field setting to validate our laboratory and simulation results. Results Depth of penetration was negatively related to increasing substrate particle diameter and number of particle size-classes in both laboratory and field tests. Mean depth of penetration and CV stabilized after five samples, but variation remained high in scenarios containing large-grained particles. Conclusions Our results show that the device has application in gravel-bed streams but may require high amounts of sampling effort to capture variation in streams dominated by large substrate. We discuss the uses and limitations of this method for estimating substrate penetrability and provide guidance on interpretation of the estimates that it produces.

Transaction of the American Fisheries Society

Using expert knowledge to support Endangered Species Act decision‐making for data‐deficient species

Many questions relevant to conservation decision making are characterized by extreme uncertainty due to lack of empirical data and complexity of the underlying ecological processes, leading to a rapid increase in the use of structured protocols to elicit expert knowledge. Published ecological applications often employ a modified Delphi method, where experts provide judgments anonymously and mathematical aggregation techniques are used to combine judgments. The Sheffield Elicitation Framework (SHELF) differs in its behavioral approach to synthesizing individual judgments into a fully specified probability distribution for an unknown quantity. This study demonstrates the remote use of the SHELF protocol for an extinction risk assessment of three subterranean aquatic species petitioned for listing under the US Endangered Species Act. Experts were provided an empirical threat assessment for each known locality using video conferencing and asked for judgments on the probability of population persistence over four generations using online submission forms and R‐shiny apps available through the SHELF package. Despite large uncertainty for all populations, results reveal key differences between species’ risk of extirpation based on spatial variation in dominant threats, local land use and management practices, and microhabitat use. The resulting probability distributions provide decision makers with a full picture of uncertainty that is consistent with the probabilistic nature of risk assessments, and discussions during the behavioral aggregation stage clearly document dominant threats (e.g., development, timber harvest, animal agriculture, and cave visitation) and their interactions with local cave geology and species’ habitat preferences. Our virtual implementation of the SHELF protocol demonstrates the flexibility of this approach for conservation applications operating on budgets and timelines that can limit in‐person meetings of geographically dispersed experts.

Conservation Biology