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At least 955 records · Page 53Linked to original sources

Tsunami vertical-evacuation planning in the U.S. Pacific Northwest as a geospatial, multi-criteria decision problem

Tsunami vertical-evacuation (TVE) refuges can be effective risk-reduction options for coastal communities with local tsunami threats but no accessible high ground for evacuations. Deciding where to locate TVE refuges is a complex risk-management question, given the potential for conflicting stakeholder priorities and multiple, suitable sites. We use the coastal community of Ocean Shores (Washington, USA) and the local tsunami threat posed by Cascadia subduction zone earthquakes as a case study to explore the use of geospatial, multi-criteria decision analysis for framing the locational problem of TVE siting. We demonstrate a mixed-methods approach that uses potential TVE sites identified at community workshops, geospatial analysis to model changes in pedestrian evacuation times for TVE options, and statistical analysis to develop metrics for comparing population tradeoffs and to examine influences in decision making. Results demonstrate that no one TVE site can save all at-risk individuals in the community and each site provides varying benefits to residents, employees, customers at local stores, tourists at public venues, children at schools, and other vulnerable populations. The benefit of some proposed sites varies depending on whether or not nearby bridges will be functioning after the preceding earthquake. Relative rankings of the TVE sites are fairly stable under various criteria-weighting scenarios but do vary considerably when comparing strategies to exclusively protect tourists or residents. The proposed geospatial framework can serve as an analytical foundation for future TVE siting discussions.

Washington↗

Volcano hazards program in the United States

Volcano monitoring and volcanic-hazards studies have received greatly increased attention in the United States in the past few years. Before 1980, the Volcanic Hazards Program was primarily focused on the active volcanoes of Kilauea and Mauna Loa, Hawaii, which have been monitored continuously since 1912 by the Hawaiian Volcano Observatory. After the reawakening and catastrophic eruption of Mount St. Helens in 1980, the program was substantially expanded as the government and general public became aware of the potential for eruptions and associated hazards within the conterminous United States. Integrated components of the expanded program include: volcanic-hazards assessment; volcano monitoring; fundamental research; and, in concert with federal, state, and local authorities, emergency-response planning. In 1980 the David A. Johnston Cascades Volcano Observatory was established in Vancouver, Washington, to systematically monitor the continuing activity of Mount St. Helens, and to acquire baseline data for monitoring the other, presently quiescent, but potentially dangerous Cascade volcanoes in the Pacific Northwest. Since June 1980, all of the eruptions of Mount St. Helens have been predicted successfully on the basis of seismic and geodetic monitoring. The largest volcanic eruptions, but the least probable statistically, that pose a threat to western conterminous United States are those from the large Pleistocene-Holocene volcanic systems, such as Long Valley caldera (California) and Yellowstone caldera (Wyoming), which are underlain by large magma chambers still potentially capable of producing catastrophic caldera-forming eruptions. In order to become better prepared for possible future hazards associated with such historically unpecedented events, detailed studies of these, and similar, large volcanic systems should be intensified to gain better insight into caldera-forming processes and to recognize, if possible, the precursors of caldera-forming eruptions.

Journal of Geodynamics↗

Patterns of use and distribution of king eiders and black scoters during the annual cycle in northeastern Bristol Bay, Alaska

Northeastern Bristol Bay, Alaska, which includes three large estuaries, is used by multiple sea duck species during the annual cycle. Limited aerial surveys indicate that this area supports tens of thousands of king eiders and black scoters during spring migration and the autumn molt. Existing satellite telemetry data were used to assess the temporal patterns of habitat use and spatial distribution of king eiders and black scoters in northeastern Bristol Bay throughout the annual cycle. King eiders used northeastern Bristol Bay during all months of the annual cycle and black scoters used the area during spring through fall. Both species exhibited a similar seasonal pattern of use that corresponded with the timing of life-cycle stages. Abundance of both species was highest during spring migration and the autumn molting period and lowest during summer. Use by king eiders did not occur during all winter months in every year of the study. King eiders were more broadly distributed than black scoters and were located farther from shore in deeper water. Core use areas had minimal overlap, suggesting a degree of spatial segregation between species and a preference for different habitats in northeastern Bristol Bay. Further study of potential variation in invertebrate community structure that may correlate with the observed interspecific spatial segregation in habitat use is needed to determine preferred forage and describe habitat requirements for each species. Such information is necessary to assess the potential impact that future anthropogenic or environmental changes may have on habitat quality of northeastern Bristol Bay and demography of Pacific sea duck populations that use this area.

Alaska↗

Publications of the Western Earth Surface Processes Team, 1999

The Western Earth Surfaces Processes Team (WESPT) of the U.S. Geological Survey, Geologic Division (USGS, GD), conducts geologic mapping and related topical earth- science studies in the western United States. This work is focused on areas where modern geologic maps and associated earth-science data are needed to address key societal and environmental issues such as ground-water quality, potential geologic hazards, and land-use decisions. Areas of primary emphasis currently include southern California, the San Francisco Bay region, and the Pacific Northwest. The team has its headquarters in Menlo Park, California, and maintains field offices at several other locations in the western United States. The results of research conducted by the WESPT are released to the public as a variety of databases, maps, text reports, and abstracts, both through the internal publication system of the USGS and in diverse external publications such as scientific journals and books. This report lists publications of the WESPT released in 1999 as well as additional 1997 and 1998 publications that were not included in the previous list (USGS Open-file Report 99-302). Most of the publications listed were authored or coauthored by WESPT staff. The list also includes some publications authored by non-USGS cooperators with the WESPT, as well as some authored by USGS staff outside the WESPT in cooperation with WESPT projects.

Open-File Report↗

Publications of the Western Earth Surface Processes Team 2000

The Western Earth Surface Processes Team (WESP) of the U.S. Geological Survey (USGS) conducts geologic mapping and related topical earth science studies in the western United States. This work is focused on areas where modern geologic maps and associated earth-science data are needed to address key societal and environmental issues such as ground-water quality, potential geologic hazards, and land-use decisions. Areas of primary emphasis in 2000 included southern California, the San Francisco Bay region, the Pacific Northwest, the Las Vegas urban corridor, and selected National Park lands. The team has its headquarters in Menlo Park, California, and maintains smaller field offices at several other locations in the western United States. The results of research conducted by the WESPT are released to the public as a variety of databases, maps, text reports, and abstracts, both through the internal publication system of the USGS and in diverse external publications such as scientific journals and books. This report lists publications of the WESPT released in 2000 as well as additional 1999 publications that were not included in the previous list (USGS Open-file Report 00-215). Most of the publications listed were authored or coauthored by WESPT staff. The list also includes some publications authored by non-USGS cooperators with the WESPT, as well as some authored by USGS staff outside the WESPT in cooperation with WESPT projects. Several of the publications listed are available on the World Wide Web; for these, URL addresses are provided. Many of these Web publications are USGS open-file reports that contain large digital databases of geologic map and related information.

Open-File Report↗

Growth and abundance of Pacific Sand Lance, Ammodytes hexapterus , under differing oceanographic regimes

Dramatic changes in seabird and marine mammal stocks in the Gulf of Alaska have been linked to shifts in abundance and composition of forage fish stocks over the past 20 years. The relative value (e.g., size and condition of individual fish, abundance) of specific forage fish stocks to predators under temporally changing oceanographic regimes is also expected to vary. We inferred potential temporal responses in abundance, growth, and age structure of a key forage fish, sand lance, by studying across spatially different oceanographic regimes. Marked meso-scale differences in abundance, growth, and mortality existed in conjunction with these differing regimes. Growth rate within stocks (between years) was positively correlated with temperature. However, this relationship did not exist among stocks (locations) and differing growth rates were better correlated to marine productivity. Sand lance were least abundant and grew slowest at the warmest site (Chisik Island), an area of limited habitat and low food abundance. Abundance and growth of juvenile sand lance was highest at the coolest site (Barren Islands), an area of highly productive upwelled waters. Sand lance at two sites located oceanographically between the Barren Islands and Chisik Island (inner- and outer-Kachemak Bay) displayed correspondingly intermediate abundance and growth. Resident predators at these sites are presented with markedly different numbers and quality of this key prey species. Our results suggest that at the decadal scale, Gulf of Alaska forage fish such as sand lance are probably more profoundly affected by changes in abundance and quality of their planktonic food, than by temperature alone.

Alaska↗

Genetic structure among greater white-fronted goose populations of the Pacific Flyway

An understanding of the genetic structure of populations in the wild is essential for long-term conservation and stewardship in the face of environmental change. Knowledge of the present-day distribution of genetic lineages (phylogeography) of a species is especially important for organisms that are exploited or utilize habitats that may be jeopardized by human intervention, including climate change. Here, we describe mitochondrial (mtDNA) and nuclear genetic (microsatellite) diversity among three populations of a migratory bird, the greater white-fronted goose ( Anser albifrons ), which breeds discontinuously in western and southwestern Alaska and winters in the Pacific Flyway of North America. Significant genetic structure was evident at both marker types. All three populations were differentiated for mtDNA, whereas microsatellite analysis only differentiated geese from the Cook Inlet Basin. In sexual reproducing species, nonrandom mate selection, when occurring in concert with fine-scale resource partitioning, can lead to phenotypic and genetic divergence as we observed in our study. If mate selection does not occur at the time of reproduction, which is not uncommon in long-lived organisms, then mechanisms influencing the true availability of potential mates may be obscured, and the degree of genetic and phenotypic diversity may appear incongruous with presumed patterns of gene flow. Previous investigations revealed population-specific behavioral, temporal, and spatial mechanisms that likely influence the amount of gene flow measured among greater white-fronted goose populations. The degree of observed genetic structuring aligns well with our current understanding of population differences pertaining to seasonal movements, social structure, pairing behavior, and resource partitioning.

Ecology and Evolution↗

A natural‐origin steelhead population's response to exclusion of hatchery fish

It is asserted that reduction or elimination of hatchery stocking will increase natural‐origin salmon Oncorhynchus spp. and steelhead O. mykiss production. We conducted an analysis of steelhead population census data (1958–2017) to determine whether elimination of summer steelhead stocking in the upper Clackamas River in 1998 increased the productivity of natural‐origin winter steelhead. A Bayesian state–space stock–recruitment model was fitted to the adult steelhead data set, and productivity was estimated as a function of hatchery‐origin spawner abundance as well as other environmental factors. When used as a predictive variable in our model, the abundance of hatchery summer steelhead spawners (1972–2001) did not have a negative effect on winter steelhead recruitment. However, spill at North Fork Dam (the gateway to the upper Clackamas River basin) and the Pacific Decadal Oscillation (an index of ocean conditions) were both negatively associated with winter steelhead recruitment. Moreover, winter steelhead abundance in the upper Clackamas River basin failed to rebound to abundances observed in years prior to the hatchery program, and fluctuations in winter steelhead abundance were correlated with those of other regional winter steelhead stocks. Our assessment underscores the need for studies that (1) directly quantify the effects of hatchery fish on the production of natural‐origin salmon and steelhead, (2) empirically test published theories about mechanisms of hatchery fish impacts on natural‐origin populations, and (3) document population responses to major changes in hatchery programs.

Oregon↗

Growth anomalies on the coral genera Acropora and Porites are strongly associated with host density and human population size across the Indo-Pacific

Growth anomalies (GAs) are common, tumor-like diseases that can cause significant morbidity and decreased fecundity in the major Indo-Pacific reef-building coral genera, Acropora and Porites. GAs are unusually tractable for testing hypotheses about drivers of coral disease because of their pan-Pacific distributions, relatively high occurrence, and unambiguous ease of identification. We modeled multiple disease-environment associations that may underlie the prevalence of Acropora growth anomalies (AGA) (n = 304 surveys) and Porites growth anomalies (PGA) (n = 602 surveys) from across the Indo-Pacific. Nine predictor variables were modeled, including coral host abundance, human population size, and sea surface temperature and ultra-violet radiation anomalies. Prevalence of both AGAs and PGAs were strongly host density-dependent. PGAs additionally showed strong positive associations with human population size. Although this association has been widely posited, this is one of the first broad-scale studies unambiguously linking a coral disease with human population size. These results emphasize that individual coral diseases can show relatively distinct patterns of association with environmental predictors, even in similar diseases (growth anomalies) found on different host genera (Acropora vs. Porites). As human densities and environmental degradation increase globally, the prevalence of coral diseases like PGAs could increase accordingly, halted only perhaps by declines in host density below thresholds required for disease establishment.

PLoS ONE↗

International migration patterns of Red-throated Loons (Gavia stellata) from four breeding populations in Alaska

Identifying post-breeding migration and wintering distributions of migratory birds is important for understanding factors that may drive population dynamics. Red-throated Loons ( Gavia stellata ) are widely distributed across Alaska and currently have varying population trends, including some populations with recent periods of decline. To investigate population differentiation and the location of migration pathways and wintering areas, which may inform population trend patterns, we used satellite transmitters (n = 32) to describe migration patterns of four geographically separate breeding populations of Red-throated Loons in Alaska. On average (± SD) Red-throated Loons underwent long (6,288 ± 1,825 km) fall and spring migrations predominantly along coastlines. The most northern population (Arctic Coastal Plain) migrated westward to East Asia and traveled approximately 2,000 km farther to wintering sites than the three more southerly populations (Seward Peninsula, Yukon-Kuskokwim Delta, and Copper River Delta) which migrated south along the Pacific coast of North America. These migration paths are consistent with the hypothesis that Red-throated Loons from the Arctic Coastal Plain are exposed to contaminants in East Asia. The three more southerly breeding populations demonstrated a chain migration pattern in which the more northerly breeding populations generally wintered in more northerly latitudes. Collectively, the migration paths observed in this study demonstrate that some geographically distinct breeding populations overlap in wintering distribution while others use highly different wintering areas. Red-throated Loon population trends in Alaska may therefore be driven by a wide range of effects throughout the annual cycle.

Alaska↗

Occupancy dynamics of the California Gnatcatcher in southern California

Executive Summary The Coastal California Gnatcatcher ( Polioptila californica californica : “gnatcatcher”) is a resident species restricted to coastal sage scrub habitat in southern California. Listed as federally threatened, the gnatcatcher is subject to multiple threats, including habitat loss, fragmentation, and degradation, particularly in association with the increasing frequency of large wildfires. The California Gnatcatcher is a focal species under several habitat conservation plans and is monitored to determine population trends and evaluate the success of the plans in protecting the species. Historically, gnatcatcher monitoring has been limited in geographic scope and has used differing methodologies, limiting the extent to which findings can be generalized across larger spatial scales and multiple populations. In 2015, we completed the first of an intended series of surveys following a standardized protocol designed to address two broad objectives. First, we sought to determine gnatcatcher occupancy at the regional scale, including habitat from throughout the species’ range in southern California, as well as in two subregions: Orange County and San Diego County, to address specific management objectives within those jurisdictions. In addition, we collected vegetation data to better understand gnatcatcher habitat associations that affect occupancy. In a parallel objective, we evaluated the effect of fire on gnatcatchers and their habitat by comparing occupancy and vegetation characteristics across sites varying in the length of time since the last fire. Data collected in 2020 allowed us to expand the study to include analyses of colonization (sites unoccupied in one year and occupied the next) and extinction (sites occupied in one year but not the next). In 2020, we surveyed 327 regional points and 180 subregional points each in Orange and San Diego Counties. In addition, we surveyed 95–106 points within 4 postfire categories based on the year of the last fire at each point: before or during 2002 (“unburned”), 2003–06, 2007–10, and 2011–14. We surveyed for gnatcatchers during three area searches centered on each point at 2-week intervals commencing in mid-March. Vegetation data were collected during May–June using a modified point-intercept method along fixed transects. Shrub and tree cover at our plots was dominated by California sagebrush ( Artemisia californica ), California buckwheat ( Eriogonum fasciculatum ), laurel sumac ( Malosma laurina ), sage (including Salvia mellifera and S. leucophylla ), and sunflowers (including Encelia californica , E. farinosa , and Bahiopsis laciniata ); however, most of the vegetation at plots consisted of non-native grass and herbaceous plants, indicating a high level of disturbance associated with fire. We documented vegetation differences at the subregional scale indicative of differences in fire history: in Orange County, overall shrub/tree cover was higher and herbaceous cover lower than in San Diego, where three large fires had burned within 17 years of this study. Both woody and herbaceous cover increased between 2016 and 2020 at the regional and two subregional scales, likely a response to above-average precipitation during 2 years preceding the 2020 surveys. Herbaceous vegetation also increased at postfire points; however, woody vegetation cover changed little between 2016 and 2020. We modeled the effects of vegetation and physical (elevation, distance to Pacific coast, slope) covariates on gnatcatcher occupancy, colonization, and extinction probabilities in the regional, subregional, and postfire datasets. Cover of California sagebrush was the strongest predictor of gnatcatcher occupancy and appeared in the top models for every dataset. California buckwheat was another strong positive predictor of gnatcatcher occupancy in all datasets. Cover of sunflowers was a positive predictor of occupancy in the Orange County subregion, and both sunflowers and sage were positive predictors of occupancy at postfire points. In contrast, laurel sumac was negatively related to gnatcatcher occupancy in postfire habitats, with occupancy unlikely when sumac exceeded 50 percent cover. Herbaceous vegetation, including invasive grass, negatively affected gnatcatcher occupancy regionwide. Covariates that were strong positive predictors of occupancy were also positive predictors of colonization and (or) negative predictors of extinction, and vice versa. Outside of the positive effects of California sagebrush and California buckwheat, and the negative effect of total herbaceous cover, we identified few covariates influencing colonization. In contrast, we identified many more predictors of extinction, including cover of laurel sumac and grass, which increased extinction risk, and cover of California sagebrush, sunflowers, and bare ground, along with time since last fire, which reduced extinction risk. We used our modelled estimates of colonization and extinction probabilities to derive occupancy in 2020 based on starting occupancy in 2016. Gnatcatcher occupancy increased in 2020 at regional and subregional scales and in unburned habitat, growing by 19–35 percent since 2016. Among burned sites, occupancy tripled from 2016 to 2020 at points burned during 2011–14 but was unchanged at the 2007–10 postfire points and declined by 28 percent at points burned in 2003–06. The slow recovery of the gnatcatcher population in this latter category, which makes up 16 percent of the suitable habitat in San Diego County, is a matter of conservation concern warranting further attention. Collectively, our rangewide results reveal a widespread and long-term effect of wildfire on California Gnatcatcher habitat, particularly in San Diego County. These data provide a baseline from which future monitoring can be used to evaluate changes in habitat condition over time and to improve our understanding of the factors and processes influencing gnatcatcher occupancy.

California↗

Dissolved saxitoxin causes transient inhibition of sensorimotor function in larval Pacific herring (Clupea harengus pallasi) Kathi A. Lefebvre , N

Herring ( Clupea harengus pallasi ) spawning sites in Puget Sound, Washington overlap spatially and temporally with blooms of Alexandrium catenella , a toxic dinoflagellate species responsible for paralytic shellfish poisoning. Consequently, newly hatched herring larvae may be regularly exposed to the suite of dissolved paralytic shellfish toxins that are released into the water column from toxic cells during blooms. To date, virtually nothing is known about the impacts of these neurotoxins on early developmental stages of marine fish. In the present study, herring larvae at three ages, 0 days post hatch (dph), 4 dph, and 11 dph, were exposed to dissolved saxitoxin (STX) in 24-h and multi-day exposures. All larvae were examined for sensorimotor function (i.e. spontaneous swimming behavior and touch response). Significant reductions in spontaneous and touch-activated swimming behavior occurred within 1 h of exposure. EC 50 s at 1 h of exposure were 1,500, 840, and 700 μg STX equiv. l −1 for larvae introduced to STX at 0, 4, and 11 dph, respectively. This progressive age-specific increase in STX-induced paralysis suggests that older larvae were more sensitive to the toxin than younger larvae. Interestingly, herring larvae at all ages exhibited a significant degree of neurobehavioral recovery within 4–24 h of continuous exposure relative to the 1-h time point. This recovery of normal motor behaviors was not observed in previous studies with freshwater zebrafish ( Danio rerio ) larvae under the same continuous exposure conditions, suggesting that an adaptive detoxification or toxin sequestration mechanism may have evolved in some species of marine fish larvae. Our data reveal that (1) dissolved STX is bioavailable to marine finfish larvae, (2) the toxin is a paralytic agent with potencies that differ between developmental stages, and (3) STX-induced sensorimotor inhibition occurs rapidly but is transient in marine larvae. Collectively, these results suggest that dissolved algal toxins may have important sublethal effects on marine fish populations.

Marine Biology↗

Gene transcription patterns in response to low level petroleum contaminants in Mytilus trossulus from field sites and harbors in southcentral Alaska

The 1989 Exxon Valdez oil spill damaged a wide range of natural resources, including intertidal communities, and post-spill studies demonstrated acute and chronic exposure and injury to an array of species. Standard toxicological methods to evaluate petroleum contaminants have assessed tissue burdens, with fewer assays providing indicators of health or physiology, particularly when contaminant levels are low and chronic. Marine mussels are a ubiquitous and crucial component of the nearshore environment, and new genomic technologies exist to quantify molecular responses of individual mussels to stimuli, including exposure to polycyclic aromatic hydrocarbons (PAHs). We used gene-based assays of exposure and physiological function to assess chronic oil contamination using the Pacific blue mussel, Mytilus trossulus . We developed a diagnostic gene transcription panel to investigate exposure to PAHs and other contaminants and its effects on mussel physiology and health. During 2012–2015, we analyzed mussels from five field sites in western Prince William Sound, Alaska, with varying oil histories from the 1989 Exxon Valdez oil spill, and from three boat harbors in the area. Gene transcription patterns of mussels from harbors were consistent with elevated exposure to PAHs or other contaminants, whereas transcription patterns of mussels sampled from shorelines in areas affected by the oil spill indicated no PAH exposure.

Alaska↗

Transmission routes maintaining a viral pathogen of steelhead trout within a complex multi-host assemblage

This is the first comprehensive region wide, spatially explicit epidemiologic analysis of surveillance data of the aquatic viral pathogen infectious hematopoietic necrosis virus (IHNV) infecting native salmonid fish. The pathogen has been documented in the freshwater ecosystem of the Pacific Northwest of North America since the 1950s, and the current report describes the disease ecology of IHNV during 2000–2012. Prevalence of IHNV infection in monitored salmonid host cohorts ranged from 8% to 30%, with the highest levels observed in juvenile steelhead trout. The spatial distribution of all IHNV-infected cohorts was concentrated in two sub-regions of the study area, where historic burden of the viral disease has been high. During the study period, prevalence levels fluctuated with a temporal peak in 2002. Virologic and genetic surveillance data were analyzed for evidence of three separate but not mutually exclusive transmission routes hypothesized to be maintaining IHNV in the freshwater ecosystem. Transmission between year classes of juvenile fish at individual sites (route 1) was supported at varying levels of certainty in 10%–55% of candidate cases, transmission between neighboring juvenile cohorts (route 2) was supported in 31%–78% of candidate cases, and transmission from adult fish returning to the same site as an infected juvenile cohort was supported in 26%–74% of candidate cases. The results of this study indicate that multiple specific transmission routes are acting to maintain IHNV in juvenile fish, providing concrete evidence that can be used to improve resource management. Furthermore, these results demonstrate that more sophisticated analysis of available spatio-temporal and genetic data is likely to yield greater insight in future studies.

Idaho, Oregon, Washington↗

Responses of hatchery‐ and natural‐origin adult spring Chinook Salmon to a trap‐and‐haul reintroduction program

The construction of impassable dams severely affected many Pacific salmon Oncorhynchus spp. populations, resulting in reintroduction efforts that are now focused on returning anadromous fish to areas located upstream of these dams. A primary strategy for moving adult salmon and steelhead O. mykiss around a dam or multiple dams involves trapping fish downstream and transporting them to upstream areas (“trap and haul”) for spawning. We conducted a 4‐year radiotelemetry study to evaluate behavior and movement patterns of hatchery‐ and natural‐origin adult spring Chinook Salmon O. tshawytscha after a trap‐and‐haul program was implemented around three dams on the Cowlitz River, Washington. A multistate model was used to describe how factors such as origin, sex, release site location, and discharge affected transition rates to riverine areas where spawning habitat was located. Natural‐origin Chinook Salmon moved upstream from a reservoir release site and entered one of two rivers more quickly and in greater proportions than hatchery‐origin fish. Results from the multistate model indicated that transition rates from the reservoir to the Cowlitz River were 2.2 times higher for natural‐origin Chinook Salmon than for hatchery‐origin fish. About one‐half (49.6%) of the reservoir‐released hatchery‐origin Chinook Salmon moved upstream into the Cowlitz River or the Cispus River during the spawning period. The release of hatchery‐origin Chinook Salmon directly into these rivers increased the percentage of fish with river fates during the spawning period to 72.3–75.4%. Results from the multistate model showed that factors such as release site location, origin, day of year, and discharge were important predictors of transition intensities between specific locations in the study area. These findings illustrate the need to evaluate how salmon and steelhead respond to trap‐and‐haul methods, allowing for better management of reintroduction efforts in the future.

Washington↗

Directly dated MIS 3 lake-level record from Lake Manix, Mojave Desert, California, USA

An outcrop-based lake-level curve, constrained by ~ 70 calibrated 14 C ages on Anodonta shells, indicates at least 8 highstands between 45 and 25 cal ka BP within 10 m of the 543-m upper threshold of Lake Manix in the Mojave Desert of southern California. Correlations of Manix highstands with ice, marine, and speleothem records suggest that at least the youngest three highstands coincide with Dansgaard–Oeschger (D–O) stadials and Heinrich events 3 and 4. The lake-level record is consistent with results from speleothem studies in the Southwest that indicate cool wet conditions during D–O stadials. Notably, highstands between 43 and 25 ka apparently occurred at times of generally low levels of pluvial lakes farther north as interpreted from core-based proxies. Mojave lakes may have been supported by tropical moisture sources during oxygen-isotope stage 3, perhaps controlled by southerly deflection of Pacific storm tracks due to weakening of the sea-surface temperature gradient in response to North Atlantic climate perturbations.

California↗

Pesticides in amphibian habitats of Central and Northern California, USA

Previous studies have indicated that toxicity from pesticide exposure may be contributing to amphibian declines in California and that atmospheric deposition could be a primary pathway for pesticides to enter amphibian habitats. We report on a survey of California wetlands sampled along transects associated with Lassen Volcanic National Park, Lake Tahoe, Yosemite National Park, and Sequoia National Park. Each transect ran from the Pacific coast to the Cascades or Sierra Nevada mountains. Pacific chorus frogs (Pseudacris regilla), water, and sediment were collected from wetlands in 2001 and 2002. Twenty-three pesticides were found in frog, water, or sediment samples. Six contaminants including trifluralin, α-endosulfan, chlordanes, and trans-nonachlor were found in adult P. regilla. Seventeen contaminants were found in sediments, including endosulfan sulfate, chlordanes, 1-chloro-4-[2,2-dichloro-1-(4-chlorophenyl)ethenyl]benzene (4,4′-DDE), and chlorpyrifos. The mean number of chemicals detected per pond in sediments was 2.4 (2.5, standard deviation). In water, 17 chemicals were detected, with β-endosulfan being present in almost all samples. Trifluralin, chlordanes, and chlorpyrifos were the next most common. The mean number of chemicals in water per pond was 7.8 (2.9). With the possible exception of chlorpyrifos oxon in sediments and total endosulfans, none of the contaminants exceeded known lethal or sublethal concentrations in P. regilla tissue. Endosulfans, chlorpyrifos, and trifluralin were associated with historic and present day population status of amphibians. Cholinesterase, an essential neurological enzyme that can be depressed by certain pesticides, was reduced in tadpoles from areas with the greatest population declines.

Book chapter↗

A genome assembly for the southern Pacific rattlesnake, Crotalus oreganus helleri, in the western rattlesnake species complex

Rattlesnakes play important roles in their ecosystems by regulating prey populations, are involved in complex coevolutionary dynamics with their prey, and exhibit a variety of unusual adaptations, including maternal care, heat-sensing pit organs, hinged fangs, and medically-significant venoms. The western rattlesnake ( Crotalus oreganus ) is one of the widest ranging rattlesnake species, with a distribution from British Columbia, where it is listed as threatened, to Baja California and east across the Great Basin to western Wyoming, Colorado and New Mexico. Here, we report a new reference genome assembly for one of six currently recognized subspecies, C. oreganus helleri , as part of the California Conservation Genomics Project (CCGP). Consistent with the reference genomic sequencing strategy of the CCGP, we used Pacific Biosciences HiFi long reads and Hi-C chromatin-proximity sequencing technology to produce a de novo assembled genome. The assembly comprises a total of 698 scaffolds spanning 1,564,812,557 base pairs, has a contig N50 of 64.7 Mb, a scaffold N50 of 110.8 Mb, and BUSCO complete score of 90.5%. This reference genome will be valuable for studies on the genomic basis of venom evolution and variation within Crotalus , in resolving the taxonomy of C. oreganus and its relatives, and for the conservation and management of rattlesnakes in general.

California↗