Search USGS⌕ Search

SEARCH · Search USGS

Results for “Nature Methods”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 955 records · Page 53Linked to original sources
USGS2010

Approach, passage, and survival of juvenile salmonids at Little Goose Dam, Washington: Post-construction evaluation of a temporary spillway weir, 2009

This report describes a study of dam passage and survival of radio-tagged juvenile salmonids after installation of a temporary spillway weir (TSW) at Little Goose Dam, Washington, in 2009. The purpose of the study was to document fish passage and survival when the dam was operated with the TSW in place. Spillway weirs are one of several methods used to improve downstream passage of juvenile salmonids. Each spillway weir design is based on the concept of providing an overflow weir with a depth more similar to the natural migration depth of juvenile salmonids than conventional spill bays. Little Goose Dam was the last of the four lower Snake River dams to have a spillway weir installed. This was the first year that some form of surface passage device was operating at all Snake River and Columbia River dams between Lewiston, Idaho, and the Columbia River estuary. The study design stipulated that a total of 30 percent of the river discharge would continuously be passed over the TSW and the conventional spill bays, and this percentage was achieved. The TSW also was to be operated at the 'low crest' elevation during the spring and the 'high crest' elevation during the summer, but the TSW was only operated at the low crest elevation during this study. Behavior, passage, and survival of spring and summer juvenile salmonid migrants passing through Little Goose Dam were examined using radio telemetry. Survival was estimated using the Route Specific Survival Model (RSSM) by releasing tagged fish near Central Ferry State Park 21 kilometers upstream of the dam and in the tailrace approximately 0.5 kilometer downstream of the dam. From April 18 to May 21, 2009, 1,520 yearling Chinook salmon (Oncorhynchus tshawytscha) and 1,517 juvenile steelhead (O. mykiss) were radio tagged and released. From June 6 to July 5, 2009, 4,251 subyearling Chinook salmon (O. tshawytscha) were radio tagged and released. Release dates of subyearling Chinook salmon were selected to avoid 'reservoir-type' fish that cease to migrate around July. Detection sites were installed in the forebay 2 kilometers upstream of the dam, on the dam, and at several sites downstream. Detection equipment was operated from April 18 to June 5, 2009, and from June 6 to July 6, 2009, hereinafter referred to as the study periods. We describe passage behaviors through the forebay, main passage routes, and tailrace, survival probabilities through the pool (release to the forebay) and forebay and passage and survival probabilities through the main passage routes (TSW, conventional spill bays, turbines, juvenile bypass), and survival passing the concrete (the dam itself) and the dam (concrete plus the forebay).

Open-File Report↗
USGS1979

Summary appraisals of the nation's ground-water resources – Lower Colorado region

This report summarizes ground-water availability in the lower Colorado region and discusses the potential for greater ground-water development and increased efficiency of water use. The climate in the most highly developed southwestern part of the region is warm and dry and that in the northeastern part is cool and moist to dry. Although the regional average annual precipitation is only about 14 inches and most streambeds are dry during most of the year, about 1.5 billion acre-feet of ground water of moderate to good chemical quality is stored in aquifers of the region. Much of the water use is founded on pumped withdrawal of ground water. However, in most of the southwestern part of the region pumpage and consumptive use are in excess of replenishment, resulting in declining water levels. In the southwestern part of the region, water levels generally are from 200-500 feet below land surface and in large areas are less than 200 feet. Large-diameter water wells in this part of the region commonly produce 500-1 ,500 gallons per minute of water. In the northeastern part of the region, water levels generally are more than 500 feet below land surface, but in some large areas water levels are from 200-500 feet, and locally are less than 200 feet below the surface. In the northeastern part of the region, water wells generally have lower yields than those to the southwest. The yields range from a few to 2,000 gallons per minute, but most wells yield from 10 to less than 500 gallons per minute. In the southwestern part of the region about 1 billion acre-feet of ground water is recoverable from storage from the water table to a depth of 700 feet below the land surface. In the northeast about 150 million acre-feet can be recovered by dewatering a 100-foot-thick section of a typical aquifer (16 million-acre area). The estimated current annual rate of ground-water depletion, occurring almost entirely in the southwestern part of the region, is 2.4-3.2 million acre-feet per year. Almost 6 million acre-feet is pumped each year-about 90 percent for agriculture, 6 percent for public supply, and 3 percent for industrial use. The percentage of use for public supply and industry is increasing each year. The potential for greater development of ground water in the southwestern part of the region is constrained by land subsidence, earth cracks, increasing costs of pumping and transportation, and moderate to poor chemical quality of water. More ground water can be developed in the northeastern part of the region, where the major constraint is pumping cost owing to low to moderate well yields and depth to water. Some benefits can be realized everywhere in the region through changes in current use and greater efficiencies of use. Additional supplies may be made available by capture of natural evapotranspiration. Increasing the efficiency of use is possible hydrologically but, in the near term, is more expensive than increasing groundwater development. Decrease of irrigation, change to water-saving methods of irrigation, use of saline water, decrease of per capita public- supply use, and more reuse of water in almost every type of use could help extend the supply and thereby reduce the current rate of ground-water depletion. Financial problems have not yet caused an overall decrease in pumpage, but, locally, operating costs or partial dewatering of the aquifer has eliminated or decreased withdrawal. Current water laws in all States of the region, except Arizona, control or allocate the use of ground water.

Arizona, California, Nevada, New Mexico, Utah↗
USGS2010

Approach, passage, and survival of juvenile salmonids at Little Goose Dam, Washington: Post-construction evaluation of a temporary spillway weir, 2009

This report describes a study of dam passage and survival of radio-tagged juvenile salmonids after installation of a temporary spillway weir (TSW) at Little Goose Dam, Washington, in 2009. The purpose of the study was to document fish passage and survival when the dam was operated with the TSW in place. Spillway weirs are one of several methods used to improve downstream passage of juvenile salmonids. Each spillway weir design is based on the concept of providing an overflow weir with a depth more similar to the natural migration depth of juvenile salmonids than conventional spill bays. Little Goose Dam was the last of the four lower Snake River dams to have a spillway weir installed. This was the first year that some form of surface passage device was operating at all Snake River and Columbia River dams between Lewiston, Idaho, and the Columbia River estuary. The study design stipulated that a total of 30 percent of the river discharge would continuously be passed over the TSW and the conventional spill bays, and this percentage was achieved. The TSW also was to be operated at the ?low crest? elevation during the spring and the ?high crest? elevation during the summer, but the TSW was only operated at the low crest elevation during this study. Behavior, passage, and survival of spring and summer juvenile salmonid migrants passing through Little Goose Dam were examined using radio telemetry. Survival was estimated using the Route Specific Survival Model (RSSM) by releasing tagged fish near Central Ferry State Park 21 kilometers upstream of the dam and in the tailrace approximately 0.5 kilometer downstream of the dam. From April 18 to May 21, 2009, 1,520 yearling Chinook salmon (Oncorhynchus tshawytscha) and 1,517 juvenile steelhead (O. mykiss) were radio tagged and released. From June 6 to July 5, 2009, 4,251 subyearling Chinook salmon (O. tshawytscha) were radio tagged and released. Release dates of subyearling Chinook salmon were selected to avoid ?reservoir-type? fish that cease to migrate around July. Detection sites were installed in the forebay 2 kilometers upstream of the dam, on the dam, and at several sites downstream. Detection equipment was operated from April 18 to June 5, 2009, and from June 6 to July 6, 2009, hereinafter referred to as the study periods. We describe passage behaviors through the forebay, main passage routes, and tailrace, survival probabilities through the pool (release to the forebay) and forebay and passage and survival probabilities through the main passage routes (TSW, conventional spill bays, turbines, juvenile bypass), and survival passing the concrete (the dam itself) and the dam (concrete plus the forebay).

Scientific Investigations Report↗
USGS1996

Low-flow characteristics of streams in Maryland and Delaware

Hydrologic information on the variability of streamflow during low-flow periods is needed for the effective management of surface-water resources in Maryland and Delaware. Low-flow characteristics derived from streamflow under natural conditions are presented for 94 continuousrecord gaging stations in Maryland, Delaware, and surrounding States, and for 131 low-flow partial-record gaging stations in Maryland and Delaware. Methods are developed to estimate low-flow characteristics at ungaged stream sites for average 7-, 14-, and 30-consecutive-day lowflow discharges for recurrence intervals of 2, 10, and 20 years. The methods are applicable to unregulated streams in Maryland and Delaware for watersheds having drainage areas ranging from 2.0 to 875 square miles. Maryland and Delaware are divided into four regions on the basis of physiography and the results of regression analyses. The regions are the Eastern Shore region in Maryland and Delaware, the eastern-Piedmont region in Maryland, the western region in Maryland, and the southern region in Maryland. Equations are developed from regression analyses to estimate lowflow characteristics at ungaged sites on ungaged streams for the Eastern Shore region, the easternPiedmont region, and the western region. A generalized least-squares multiple-regression technique is used to develop the estimation equations that relate average 7-, 14-, and 30- consecutive-day low-flow discharges for recurrence intervals of 2, 10, and 20 years to physical and climatological features of drainage basins in the study area. Adjustments are necessary to low-flow discharges estimated from the equation for the western region because of the effects of carbonate rocks on low flows. The adjustment method is based on analysis of the residuals of regional estimation equations and the percentage of the basin underlain by carbonate rocks. An equation is developed on the basis of a distance-weighted average of low-flow discharges at gaging stations to estimate low flow characteristics at ungaged sites on ungaged streams for the southern region. Estimates of the accuracy of low-flow characteristics determined from all regional equations are provided. Two methods are presented for estimating low-flow characteristics at ungaged sites on gaged streams. One method combines low-flow characteristics determined from gaging station data with results from the regional regression equation at the gaging station and at the ungaged site to estimate the low-flow characteristics either upstream or downstream from the gaging station. The other method estimates low-flow characteristics at ungaged sites between gaging stations using a graphical solution. Estimates of accuracy of the low-flow characteristics determined by these methods also are provided.

Delaware, Maryland↗
USGS2012

Burial increases seed longevity of two Artemisia tridentata ( Asteraceae ) subspecies

Premise of the study: Seed longevity and persistence in soil seed banks may be especially important for population persistence in ecosystems where opportunities for seedling establishment and disturbance are unpredictable. The fire regime, an important driver of population dynamics in sagebrush steppe ecosystems, has been altered by exotic annual grass invasion. Soil seed banks may play an active role in postfire recovery of the foundation shrub Artemisia tridentata , yet conditions under which seeds persist are largely unknown. Methods: We investigated seed longevity of two Artemisia tridentata subspecies in situ by retrieving seed bags that were placed at varying depths over a 2 yr period. We also sampled naturally dispersed seeds in litter and soil immediately after seed dispersal and before flowering in subsequent seasons to estimate seed persistence. Key results: After 24 mo, seeds buried at least 3 cm below the soil surface retained 30–40% viability whereas viability of seeds on the surface and under litter declined to 0 and < 11%, respectively. The density of naturally dispersed seeds in the seed bank was highly heterogeneous both spatially and temporally, and attrition varied significantly by region. Conclusions: Our study suggests that Artemisia tridentata has the potential to form a short-term soil seed bank that persists longer than has been commonly assumed, and that burial is necessary for seed longevity. Use of seeding techniques that promote burial of some seeds to aid in formation of a soil seed bank may increase restoration potential.

American Journal of Botany↗
USGS2016

Integrating remote sensing with species distribution models; Mapping tamarisk invasions using the Software for Assisted Habitat Modeling (SAHM)

Early detection of invasive plant species is vital for the management of natural resources and protection of ecosystem processes. The use of satellite remote sensing for mapping the distribution of invasive plants is becoming more common, however conventional imaging software and classification methods have been shown to be unreliable. In this study, we test and evaluate the use of five species distribution model techniques fit with satellite remote sensing data to map invasive tamarisk ( Tamarix spp.) along the Arkansas River in Southeastern Colorado. The models tested included boosted regression trees (BRT), Random Forest (RF), multivariate adaptive regression splines (MARS), generalized linear model (GLM), and Maxent. These analyses were conducted using a newly developed software package called the Software for Assisted Habitat Modeling (SAHM). All models were trained with 499 presence points, 10,000 pseudo-absence points, and predictor variables acquired from the Landsat 5 Thematic Mapper (TM) sensor over an eight-month period to distinguish tamarisk from native riparian vegetation using detection of phenological differences. From the Landsat scenes, we used individual bands and calculated Normalized Difference Vegetation Index (NDVI), Soil-Adjusted Vegetation Index (SAVI), and tasseled capped transformations. All five models identified current tamarisk distribution on the landscape successfully based on threshold independent and threshold dependent evaluation metrics with independent location data. To account for model specific differences, we produced an ensemble of all five models with map output highlighting areas of agreement and areas of uncertainty. Our results demonstrate the usefulness of species distribution models in analyzing remotely sensed data and the utility of ensemble mapping, and showcase the capability of SAHM in pre-processing and executing multiple complex models.

Journal of Visualized Experiments↗
USGS2001

Interactions between fire and invasive plants in temperate grasslands of North America

A substantial number of invasive grasses, forbs and woody plants have invaded temperate grasslands in North America. Among the invading species are winter annuals, biennials, cool-season perennials, warm-season perennials, vines, shrubs, and trees. Many of these species have been deliberately introduced and widely planted; some are still used for range improvement, pastures, lawns, and as ornamentals, though many are listed as state or federal noxious weeds. Others have been greatly facilitated by widespread land disturbance. Historically, fire has been a major selective force in the evolution of temperate grasslands. Further, prescribed fire is commonly used as a method of ecological management for native grassland communities as well as in conjunction with restoration efforts. Within this context, it is important to understand how invasive species will interact with natural and prescribed fire regimes. In this paper, we consider what is known about how exotic species that invade temperate grasslands relate to fire. The primary issues addressed for each species are (1) Does fire appear to enhance colonization? (2) To what degree does fire affect the survival of plants? (3) Are plants that are burned able to regrow following fire and, if so, how rapidly can they recover? (4) How important is competition with native species to the response to fire? and (5) What effect does an invasive species have on the characteristics of the fire regime? For many species, results are preliminary, incomplete, or inconsistent among studies. For this reason, many of the conclusions drawn for individual species must be considered preliminary. Based on analyses of individual species, a conceptual framework is presented for considering how invasive plants may interact with fire when they invade an ecosystem. The major categories of influences are the native community, the fire regime, growth conditions for both invasive and native species, and influences that disturbances, human impacts, and landscape characteristics have had in the past and will have in the future. The examples considered in this paper provide support for a few, tentative generalizations. First, among our current worst invaders of temperate grasslands, adaptation to fire is quite variable. Some species are not well adapted to burning and can be easily eliminated; other species are better adapted but can still be eliminated if fire occurs during periods of particular vulnerability and/or at high frequency. There is a set of species that is extremely well adapted to fire and will not be eliminated through burning alone. Second, competitive interactions with native species play a crucial role in the success of nonnative invaders. In cases where differential burn responses between invasive and native species can be exploited, and adequate populations of native dominant species are present, fire can sometimes tip the competitive balance away from invasives. Third, there are a few invasive species that have exceptional attributes and for which there are no easy solutions. The ability of cheatgrass ( Bromus tectorum ) to enhance fire, the ability of Chinese tallow ( Triadica sebifera ) to suppress fire, and the ability of leafy spurge ( Euphorbia esula ) to resprout from repeated injury make these species exceptional threats to native diversity. Finally, the available information for many invasive species is very incomplete, partic- ularly with regard to how fire affects competitive interactions with the native community. There is much more we need to know if we are to consistently predict how invasive species will respond to fire and how burning can best be used to manage for natural diversity.

Conference Paper↗
USGS2004

Methods of analysis by the U.S. Geological Survey National Water Quality Laboratory-Determination of organochlorine pesticides and polychlorinated biphenyls in bottom and suspended sediment by gas chromatography with electron-capture detection

A method applicable for the determination of 19 organochlorine (OC) pesticides, including total toxaphene as a complex mixture, and 3 polychlorinated biphenyl (PCB) mixtures as Aroclor equivalents--Aroclor 1016/1242, 1254, and 1260--in soil, aquatic bottom sediment, and suspended sediment is described. Method performance data are presented. The solvent system is designed to extract simultaneously selected OC pesticides and PCBs from the same sample matrix. The compounds are extracted by conventional Soxhlet extraction with dichloromethane, followed by partial isolation using gel permeation chromatography (GPC) to remove inorganic sulfur and large naturally present molecules from the sediment extract. The aliquot of extract collected from the GPC for OCs (OC pesticides and PCBs) is split into two sample fractions by alumina/silica combined-column chromatography, followed by Florisil adsorption chromatography to remove interfering compounds in the second fraction. The OC fractions are analyzed by dual capillary-column gas chromatography with electron-capture detection (GC/ECD). This report is limited to the determination of selected OC pesticides and PCBs by GC/ECD using this method. Interim reporting levels (IRLs) have been set at 0.400 to 3.12 micrograms per kilogram for 18 individual OC pesticides, 200 micrograms per kilogram for toxaphene, and 4.04 to 4.68 micrograms per kilogram for the PCBs, based on a sample size of 25-gram equivalent dry weight. These reporting levels may change following additional determinations of method detection limits.

Water-Resources Investigations Report↗
USGS2020

Field-based method for assessing duration of infectivity for influenza A viruses in the environment

Understanding influenza A virus (IAV) persistence in wetlands is limited by a paucity of field studies relating to the maintenance of infectivity over time. The duration of IAV infectivity in water has been assessed under variable laboratory conditions, but results are difficult to translate to more complex field conditions. We tested a field-based method to assess the viability of IAVs in an Alaska wetland during fall and winter which incorporated physical and chemical properties of the waterbody in which samples were held. Filtered pond water was inoculated with avian fecal samples collected from the environment, aliquoted into a series of duplicate sealed vials and submerged back in the wetland for up to 132 days (October 2018–March 2019). Sample aliquots were sequentially recovered and tested for IAVs by rRT-PCR and virus isolation. One sample remained rRT-PCR positive for the duration of the study and virus isolation positive for 118 days. The surrounding water temperature was 1°–6 °C with near neutral pH (6.6–7.3) for the duration of the study. This proof of concept study demonstrates a protocol for testing the persistence of infectious IAV naturally shed from waterfowl under ambient environmental conditions.

Alaska↗
USGS2014

A comparison of high-resolution specific conductance-based end-member mixing analysis and a graphical method for baseflow separation of four streams in hydrologically challenging agricultural watersheds

Quantifying the relative contributions of different sources of water to a stream hydrograph is important for understanding the hydrology and water quality dynamics of a given watershed. To compare the performance of two methods of hydrograph separation, a graphical program [baseflow index (BFI)] and an end-member mixing analysis that used high-resolution specific conductance measurements (SC-EMMA) were used to estimate daily and average long-term slowflow additions of water to four small, primarily agricultural streams with different dominant sources of water (natural groundwater, overland flow, subsurface drain outflow, and groundwater from irrigation). Because the result of hydrograph separation by SC-EMMA is strongly related to the choice of slowflow and fastflow end-member values, a sensitivity analysis was conducted based on the various approaches reported in the literature to inform the selection of end-members. There were substantial discrepancies among the BFI and SC-EMMA, and neither method produced reasonable results for all four streams. Streams that had a small difference in the SC of slowflow compared with fastflow or did not have a monotonic relationship between streamflow and stream SC posed a challenge to the SC-EMMA method. The utility of the graphical BFI program was limited in the stream that had only gradual changes in streamflow. The results of this comparison suggest that the two methods may be quantifying different sources of water. Even though both methods are easy to apply, they should be applied with consideration of the streamflow and/or SC characteristics of a stream, especially where anthropogenic water sources (irrigation and subsurface drainage) are present.

Hydrological Processes↗
USGS2019

Evaluation of artificial cover units as a sampling technique and habitat enhancement for madtoms in rivers

Instream habitat degradation and loss are major threats to freshwater fishes and critical conservation issues among nongame species, due to a lack of research and knowledge concerning their habitat requirements. Instream physical cover is an important component of fish habitat, especially for benthic species that require cover for reproduction and shelter from predators. One such species is the Carolina Madtom Noturus furiosus, a small, imperiled, nongame catfish endemic to the Neuse and Tar river basins of North Carolina. To enhance understanding of instream cover dynamics, we constructed artificial cover units from terra cotta materials and deployed them in rivers to (1) evaluate if they could be an effective passive sampling technique to estimate detection and occupancy of the Carolina Madtom, and (2) determine their potential to enhance habitat in systems where instream cover has been lost. Artificial cover units were deployed at 8 sites in the Neuse and Tar river basins, and collected 30 Carolina Madtoms at 2 sites in the Tar River basin. Occupancy modeling estimated Carolina Madtom detection probability using artificial cover units at 0.92. Compared to other standardized sampling methods, artificial cover units were an efficient, passive sampling technique for detecting Carolina Madtoms. Observations also revealed that artificial cover units were occupied by Carolina Madtoms for reproduction. These findings provide natural resource managers an additional means to assess the status of this imperiled species using an inexpensive, passive sampling device that can provide spawning habitat, protection from predators, and help mitigate effects of instream habitat degradation.

North Carolina↗
USGS2018

Long-term effects of fire and harvest on carbon stocks of boreal forests in northeastern China

Context Boreal forests represent about one third of forest area and one third of forest carbon stocks on the Earth. Carbon stocks of boreal forests are sensitive to climate change, natural disturbances, and human activities. Aims The objectives of this study were to evaluate the effects of fire, harvest, and their spatial interactions on boreal forest carbon stocks of northeastern China. Methods We used a coupled forest landscape model (LANDIS PRO) and a forest ecosystem model (LINKAGES) framework to simulate the landscape-level effects of fire, harvest, and their spatial interactions over 150 years. Results Our simulation suggested that aboveground carbon and soil organic carbon are significantly reduced by fire and harvest over the whole simulation period. The long-term effects of fire and harvest on carbon stocks were greater than the short-term effects. The combined effects of fire and harvest on carbon stocks are less than the sum of the separate effects of fire and harvest. The response of carbon stocks was impacted by the spatial variability of fire and harvest regimes. Conclusion These results emphasize that the spatial interactions of fire and harvest play an important role in regulating boreal forest carbon stocks.

Annals of Forest Science↗
USGS2021

Synthesizing and analyzing long-term monitoring data: A greater sage-grouse case study

Long-term monitoring of natural resources is imperative for increasing the understanding of ecosystem processes, services, and how to manage those ecosystems to maintain or improve function. Challenges with using these data may occur because methods of monitoring changed over time, multiple organizations collect and manage data differently, and monetary resources fluctuate, affecting many aspects of data. Because many species respond to changes in habitat conditions and predator-prey relationships across different spatial scales that span management boundaries, greater efforts for collaborating are essential. We demonstrate the challenges and methods for standardizing greater sage-grouse ( Centrocercus urophasianus ) long-term monitoring data across the species range in the western United States to inform population modeling needs identified by the Western Association of Fish and Wildlife Agencies. We used automated and repeatable methods of standardizing data via custom open-source software ( grsg_lekdb ) to improve the scientific integrity of future sage-grouse population assessments within and among states. Data standardization included reconciling uses of different terminology and expunging unusable data, resulting in the removal of 26% of data records due to database insertion errors and modifications to >1 million values to correct formatting and typing errors. Our approaches maximized the inclusion of usable data and identified data that could inform detection probabilities, population trends, and monitoring guidelines. Using sage-grouse databases as an example, we identified the importance of data management and how quality assurance and quality control measures can improve the usefulness of these data for future research needs. Our methods of using informatics and concluding recommendations can support similar endeavors of flora and fauna monitoring programs, whether those efforts are to use existing data or support new monitoring programs.

Ecological Informatics↗
USGS2011

An analytical framework to assist decision makers in the use of forest ecosystem model predictions

The predictions from most forest ecosystem models originate from deterministic simulations. However, few evaluation exercises for model outputs are performed by either model developers or users. This issue has important consequences for decision makers using these models to develop natural resource management policies, as they cannot evaluate the extent to which predictions stemming from the simulation of alternative management scenarios may result in significant environmental or economic differences. Various numerical methods, such as sensitivity/uncertainty analyses, or bootstrap methods, may be used to evaluate models and the errors associated with their outputs. However, the application of each of these methods carries unique challenges which decision makers do not necessarily understand; guidance is required when interpreting the output generated from each model. This paper proposes a decision flow chart in the form of an analytical framework to help decision makers apply, in an orderly fashion, different steps involved in examining the model outputs. The analytical framework is discussed with regard to the definition of problems and objectives and includes the following topics: model selection, identification of alternatives, modelling tasks and selecting alternatives for developing policy or implementing management scenarios. Its application is illustrated using an on-going exercise in developing silvicultural guidelines for a forest management enterprise in Ontario, Canada.

Environmental Modelling and Software↗
USGS2010

Using generalized linear models to estimate selectivity from short-term recoveries of tagged red drum Sciaenops ocellatus: Effects of gear, fate, and regulation period

Estimating the selectivity patterns of various fishing gears is a critical component of fisheries stock assessment due to the difficulty in obtaining representative samples from most gears. We used short-term recoveries ( n = 3587) of tagged red drum Sciaenops ocellatus to directly estimate age- and length-based selectivity patterns using generalized linear models. The most parsimonious models were selected using AIC, and standard deviations were estimated using simulations. Selectivity of red drum was dependent upon the regulation period in which the fish was caught, the gear used to catch the fish (i.e., hook-and-line, gill nets, pound nets), and the fate of the fish upon recovery (i.e., harvested or released); models including all first-order interactions between main effects outperformed models without interactions. Selectivity of harvested fish was generally dome-shaped and shifted toward larger, older fish in response to regulation changes. Selectivity of caught-and-released red drum was highest on the youngest and smallest fish in the early and middle regulation periods, but increased on larger, legal-sized fish in the late regulation period. These results suggest that catch-and-release mortality has consistently been high for small, young red drum, but has recently become more common in larger, older fish. This method of estimating selectivity from short-term tag recoveries is valuable because it is simpler than full tag-return models, and may be more robust because yearly fishing and natural mortality rates do not need to be modeled and estimated.

North Carolina↗
USGS2021

Geochemistry and mineralogy of metallurgical slag

Slag is a waste product from the pyrometallurgical processing of natural ores or the recycling of man-made materials. This chapter provides an overview of the geochemical and mineralogical characteristics of different types of slag. A review of the analytical methods used to determine these characteristics is also provided. Ferrous slags include blast furnace, steelmaking, and ferroalloy slags; the compositions of these slags are generally dominated by Ca and Si, some with significant Al, Fe, and/or Mg. Whereas, the composition of non-ferrous slags, mostly from base-metal production, are generally dominated by Fe and Si with significant but lesser amounts of Al and Ca. As for primary mineralogical phases, olivine-group phases, spinels, and glass are common among all types of slag. Other silicates such as melilite, pyroxene, feldspars, and oxides also occur. Sulfides are more common in non-ferrous slags and metals and intermetallic compounds can be found in both base-metal and ferrous slags. Carbonates are generally exclusive of ferrous slags. The chemical composition of slag depends on the furnace feed, fluxes, fuel source, and furnace conditions and efficiency of metal extraction. The chemistry and texture of mineralogical phases found in slag reflect melt composition and cooling rates. Overall, the mineralogy and chemistry of slags will determine its fate as an environmental liability or a valuable resource.

Book chapter↗
USGS2013

Choosing and using climate change scenarios for ecological-impact assessments and conservation decisions

Increased concern over climate change is demonstrated by the many efforts to assess climate effects and develop adaptation strategies. Scientists, resource managers, and decision makers are increasingly expected to use climate information, but they struggle with its uncertainty. With the current proliferation of climate simulations and downscaling methods, scientifically credible strategies for selecting a subset for analysis and decision making are needed. Drawing on a rich literature in climate science and impact assessment and on experience working with natural resource scientists and decision makers, we devised guidelines for choosing climate-change scenarios for ecological impact assessment that recognize irreducible uncertainty in climate projections and address common misconceptions about this uncertainty. This approach involves identifying primary local climate drivers by climate sensitivity of the biological system of interest; determining appropriate sources of information for future changes in those drivers; considering how well processes controlling local climate are spatially resolved; and selecting scenarios based on considering observed emission trends, relative importance of natural climate variability, and risk tolerance and time horizon of the associated decision. The most appropriate scenarios for a particular analysis will not necessarily be the most appropriate for another due to differences in local climate drivers, biophysical linkages to climate, decision characteristics, and how well a model simulates the climate parameters and processes of interest. Given these complexities, we recommend interaction among climate scientists, natural and physical scientists, and decision makers throughout the process of choosing and using climate-change scenarios for ecological impact assessment.

Conservation Biology↗
USGS1981

Formalin preservation of avian blood for organochlorine analysis

Blood biopsy for chemical analysis is a valuable technique for evaluating chemical exposure of birds in the wild without harming the birds. Field conditions, however, often make sample storage difficult. Better methods than freezing are needed to improve the interpretive value of chemical analysis of the sample. The use of formalin was explored for this purpose. A pooled sample of blood containing naturally incorporated 1,1-bis-(p-chlorophenyl)-2,2,2-trichloroethane (DDT), 2,2-bis-(p-chlorophenyl)1,1 dichloroethylene (DDE), and dieldrin was subdivided into 30 samples, of which 10 were frozen, 10 more were kept at room temperature, and 10 were formalinized by adding I part of chemically pure formalin to 20 parts of blood. The formalinized samples yielded the highest and least variable concentrations of chemicals. The field procedures are outlined.

Book chapter↗