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At least 955 records · Page 53Linked to original sources
USGS2016

Discontinuities concentrate mobile predators: Quantifying organism-environment interactions at a seascape scale

Understanding environmental drivers of spatial patterns is an enduring ecological problem that is critical for effective biological conservation. Discontinuities (ecologically meaningful habitat breaks), both naturally occurring (e.g., river confluence, forest edge, drop-off) and anthropogenic (e.g., dams, roads), can influence the distribution of highly mobile organisms that have land- or seascape scale ranges. A geomorphic discontinuity framework, expanded to include ecological patterns, provides a way to incorporate important but irregularly distributed physical features into organism–environment relationships. Here, we test if migratory striped bass ( Morone saxatilis ) are consistently concentrated by spatial discontinuities and why. We quantified the distribution of 50 acoustically tagged striped bass at 40 sites within Plum Island Estuary, Massachusetts during four-monthly surveys relative to four physical discontinuities (sandbar, confluence, channel network, drop-off), one continuous physical feature (depth variation), and a geographic location variable (region). Despite moving throughout the estuary, striped bass were consistently clustered in the middle geographic region at sites with high sandbar area, close to channel networks, adjacent to complex confluences, with intermediate levels of bottom unevenness, and medium sized drop-offs. In addition, the highest striped bass concentrations occurred at sites with the greatest additive physical heterogeneity (i.e., where multiple discontinuities co-occurred). The need to incorporate irregularly distributed features in organism–environment relationships will increase as high-quality telemetry and GIS data accumulate for mobile organisms. The spatially explicit approach we used to address this challenge can aid both researchers who seek to understand the impact of predators on ecosystems and resource managers who require new approaches for biological conservation.

Ecosphere↗
USGS2023

Quantifying uncertainty in coastal salinity regime for biological application using quantile regression

Salinity regimes in coastal ecosystems are highly dynamic and driven by complex geomorphic and hydrological processes. Estuarine biota are generally adapted to salinity fluctuation, but are vulnerable to salinity extremes. Characterizing coastal salinity regime for ecological studies therefore requires representing extremes of salinity ranges at time scales relevant to ecology (e.g., daily, monthly, and seasonally). Here, we propose a framework for modeling coastal salinity with these overall goals: (1) quantify uncertainty in salinity associated with important terrestrial and oceanographic drivers, (2) examine time scales of salinity response to river streamflow events, and (3) predict salinity continuously over space at key time scales. Salinity is modeled as quantile surfaces related to river discharge, tidal dynamics, wind, and spatial location, applied to Suwannee Sound estuary, FL, USA, where salinity has been monitored spatially since 1981. Each quantile level is regressed independently, and together they comprise a distribution of salinity uncertainty across space, with upper and lower quantiles describing salinity extremes. Effects of physical drivers on salinity are compared through four base models with various combinations of tide and wind variables, each including spatial coordinates and a single streamflow metric (in cubic meters per second). Multiple time scales of streamflow are considered by taking means across various periods, from 1 to 12 days, and at various lagged intervals prior to salinity sample, totaling 144 streamflow metrics. We found that the Suwannee coastal salinity regime is dynamic at multiple time scales and varies nonlinearly across space from the river effluence outward. Salinity increases nonlinearly with decreasing river flow rates below 200 m 3 /s, most prominently in the lower quantiles of salinity (τ = 0.05–0.25). Wind appears to have a stronger influence on salinity than astronomic tides for this estuary. The regression approach developed here can be applied to any coastal system that has sufficient spatial and temporal monitoring coverage to capture multiple flood and drought events. It is implemented with a simple R routine, and is less computationally-intensive than finite difference hydrodynamic modeling. The characterizations of salinity uncertainty developed in these analyses can be directly applied to future studies of fish and wildlife responses to changes in watershed management.

Florida↗
USGS2018

Do we know how much fluvial sediment reaches the sea? Decreased river monitoring of U.S. coastal rivers

Given the present and future changing climate and human changes to land use and river control, river sediment fluxes to coastal systems are changing and will continue to change in the future. To delineate these changes and their effects, it is increasingly important to document the fluxes of river-borne sediment discharged to the sea. Unfortunately, broad-scale river sediment monitoring programs established more than 50 years ago in the U.S. have diminished substantially and now focus principally on the largest rivers and estuaries. Unless addressed, these data gaps will provide significant challenges in addressing fundamental scientific and management questions about the effects of climate change and sea-level rise in our estuaries and on our coasts.

Hydrological Processes↗
USGS2014

Interactive effects of climate change with nutrients, mercury, and freshwater acidification on key taxa in the North Atlantic Landscape Conservation Cooperative region

The North Atlantic Landscape Conservation Cooperative LCC (NA LCC) is a public–private partnership that provides information to support conservation decisions that may be affected by global climate change (GCC) and other threats. The NA LCC region extends from southeast Virginia to the Canadian Maritime Provinces. Within this region, the US National Climate Assessment documented increases in air temperature, total precipitation, frequency of heavy precipitation events, and rising sea level, and predicted more drastic changes. Here, we synthesize literature on the effects of GCC interacting with selected contaminant, nutrient, and environmental processes to adversely affect natural resources within this region. Using a case study approach, we focused on 3 stressors with sufficient NA LCC region-specific information for an informed discussion. We describe GCC interactions with a contaminant (Hg) and 2 complex environmental phenomena—freshwater acidification and eutrophication. We also prepared taxa case studies on GCC- and GCC-contaminant/nutrient/process effects on amphibians and freshwater mussels. Several avian species of high conservation concern have blood Hg concentrations that have been associated with reduced nesting success. Freshwater acidification has adversely affected terrestrial and aquatic ecosystems in the Adirondacks and other areas of the region that are slowly recovering due to decreased emissions of N and sulfur oxides. Eutrophication in many estuaries within the region is projected to increase from greater storm runoff and less denitrification in riparian wetlands. Estuarine hypoxia may be exacerbated by increased stratification. Elevated water temperature favors algal species that produce harmful algal blooms (HABs). In several of the region's estuaries, HABs have been associated with bird die-offs. In the NA LCC region, amphibian populations appear to be declining. Some species may be adversely affected by GCC through higher temperatures and more frequent droughts. GCC may affect freshwater mussel populations via altered stream temperatures and increased sediment loading during heavy storms. Freshwater mussels are sensitive to un-ionized ammonia that more toxic at higher temperatures. We recommend studying the interactive effects of GCC on generation and bioavailability of methylmercury and how GCC-driven shifts in bird species distributions will affect avian exposure to methylmercury. Research is needed on how decreases in acid deposition concurrent with GCC will alter the structure and function of sensitive watersheds and surface waters. Studies are needed to determine how GCC will affect HABs and avian disease, and how more severe and extensive hypoxia will affect fish and shellfish populations. Regarding amphibians, we suggest research on 1) thermal tolerance and moisture requirements of species of concern, 2) effects of multiple stressors (temperature, desiccation, contaminants, nutrients), and 3) approaches to mitigate impacts of increased temperature and seasonal drought. We recommend studies to assess which mussel species and populations are vulnerable and which are resilient to rising stream temperatures, hydrological shifts, and ionic pollutants, all of which are influenced by GCC.

Chesapeake Bay↗
USGS2026

Seasonal and decadal changes in winter body condition of four sympatric diving ducks

Winter body condition is an important driver of survival, reproductive output, and overall population health in waterfowl. Diving duck species use distinct habitats, exploit unique resources, and can collectively provide an integrated index of winter habitat quality. The San Francisco Bay (SFB) is the largest estuary on the west coast of North America, serving as critical wintering habitat for diving ducks in the Pacific Flyway. To evaluate the body condition of diving ducks after multiple decades of tidal habitat restoration in SFB, we compared structurally corrected measurements (annual and decadal) of total carcass lipid among canvasback ( Aythya valisineria ), greater scaup ( Aythya marila ), lesser scaup ( Aythya affinis ), and ruddy duck ( Oxyura jamaicensis ). We found greater and lesser scaup gained lipid reserves within the estuary prior to spring migration; however, canvasback and ruddy duck lipid levels declined throughout the winter and into the spring. Lipid loss over the wintering period could indicate a reduction in foraging resource availability, dietary shifts, or metabolic changes. These deficiencies could have negative cross-seasonal implications, as these species must accumulate resources outside of their wintering areas to fuel migration and reproduction. Lipid levels were elevated in lesser scaup collected in 2017-2019 compared to 1998-2000, while we found no decadal differences in lipid levels for canvasback or greater scaup. Our findings suggest tidal restoration in SFB, among other factors, may benefit some diving duck species.

California↗
USGS2023

High-frequency variability of carbon dioxide fluxes in tidal water over a temperate salt marsh

Existing analyses of salt marsh carbon budgets rarely quantify carbon loss as CO 2 through the air–water interface in inundated marshes. This study estimates the variability of partial pressure of CO 2 ( p CO 2 ) and air–water CO 2 fluxes over summer and fall of 2014 and 2015 using high-frequency measurements of tidal water p CO 2 in a salt marsh of the U.S. northeast region. Monthly mean CO 2 effluxes varied in the range of 5.4–25.6 mmol m −2 marsh d −1 (monthly median: 4.8–24.7 mmol m −2 marsh d −1 ) during July to November from the tidal creek and tidally-inundated vegetated platform. The source of CO 2 effluxes was partitioned between the marsh and estuary using a mixing model. The monthly mean marsh-contributed CO 2 effluxes accounted for a dominant portion (69%) of total CO 2 effluxes in the inundated marsh, which was 3–23% (mean 13%) of the corresponding lateral flux rate of dissolved inorganic carbon (DIC) from marsh to estuary. Photosynthesis in tidal water substantially reduced the CO 2 evasion, accounting for 1–86% (mean 31%) of potential CO 2 evasion and 2–26% (mean 11%) of corresponding lateral transport DIC fluxes, indicating the important role of photosynthesis in controlling the air–water CO 2 evasion in the inundated salt marsh. This study demonstrates that CO 2 evasion from inundated salt marshes is a significant loss term for carbon that is fixed within marshes.

Massachusetts↗
USGS2018

Size, growth, and size‐selective mortality of subyearling Chinook Salmon during early marine residence in Puget Sound

In marine ecosystems, survival can be heavily influenced by size‐selective mortality during juvenile life stages. Understanding how and when size‐selective mortality operates on a population can reveal underlying growth dynamics and size‐selective ecological processes affecting the population and thus can be used to guide conservation efforts. For subyearling Chinook Salmon Oncorhynchus tshawytscha in Puget Sound, previous research reported a strong positive relationship between marine survival and body mass during midsummer in epipelagic habitats within Puget Sound, suggesting that early marine growth drives survival. However, a fine‐scale analysis of size‐selective mortality is needed to identify specific critical growth periods and habitats. The objectives of this study were to (1) describe occupancy patterns across estuarine delta, nearshore marine, and offshore epipelagic habitats in Puget Sound; (2) describe changes in FL and weight observed across habitats and time; (3) evaluate evidence for size‐selective mortality; and (4) illustrate how marine survival of the stocks studied may be affected by variation in July weight. In 2014 and 2015, we sampled FLs, weights, and scales from seven hatchery‐origin and two natural‐origin stocks of subyearling Chinook Salmon captured every 2 weeks during out‐migration and rearing in estuary, nearshore, and offshore habitats within Puget Sound. Natural‐origin stocks had more protracted habitat occupancy patterns than hatchery‐origin stocks and were smaller than hatchery‐origin stocks in both years. Regardless of origin, subyearlings were longer and heavier and grew faster in offshore habitats compared to estuary and nearshore habitats. For all stocks, we found little evidence of size‐selective mortality among habitats in Puget Sound. These patterns were consistent in both years. Finally, the weights of subyearlings sampled during July in the offshore habitat predicted Puget Sound‐wide marine survival rates of 0.4% for 2014 and 2.0% for 2015, with stock‐specific predictions ranging from 0.18% to 11.70%.

Washington↗
USGS2021

Identifying information gaps in predicting winter foraging habitat for juvenile Gulf Sturgeon

The Gulf Sturgeon Acipenser oxyrinchus desotoi is an anadromous species that inhabits Gulf of Mexico coastal waters from Louisiana to Florida and is listed as threatened under the U.S. Endangered Species Act. Seasonal cues (e.g., freshwater discharge) determine the timing of spawning and migration and may influence the availability of critical habitat during winter months in six estuaries. Large information gaps, especially related to critical estuarine habitat for juveniles, hinder recovery efforts to protect these habitats and assess risks from emerging threats. Using Apalachicola Bay, Florida, as a model system, we developed and analyzed a preliminary Bayesian network model so that we could identify knowledge gaps (i.e., where expert knowledge was lacking) and data gaps (i.e., where data were unavailable) that limit the ability to assess the quantity of critical estuarine habitat for juvenile Gulf Sturgeon. The model hypothesized habitat availability per winter month in estuarine habitat under alternative scenarios of river discharge and length of the winter foraging season. A search for geospatial data sets revealed that the largest gap involved salinity, temperature, and oxygen (i.e., water condition) monitoring data, with data available only for Apalachicola Bay. For the Apalachicola Bay model, data gaps prevented the development of 53% of water condition geospatial data sets and a sensitivity analysis showed that water condition data most limited the ability to predict habitat availability. Expert knowledge was low, and conditional certainty scores showed that the relationships with the lowest certainty were abiotic suitability and habitat availability. Reducing information gaps could aid the development of a model that is appropriate for informing management. Future efforts could prioritize the expansion of water monitoring within critical habitat estuaries and predicting abiotic suitability and habitat availability. Bayesian network models can easily incorporate prior and new information for complex systems. Thus, our model could be updated as future research and monitoring efforts close these information gaps.

Florida↗
USGS1999

Fishes in mangrove prop-root habitats of northeastern Florida Bay: Distinct assemblages across an estuarine gradient

Seasonal changes in freshwater inflow and other environmental conditions may induce changes in density and species composition of mangrove fishes along estuarine gradients. Fishes within mangrove habitats in a subtropical estuary were sampled monthly from May 1989 to May 1990, using block nets with rotenone and visual censuses. At 18 stations, temperature ranged from 22 to 34°C, depth from 10 to 104cm and underwater visibility from 1 to 13m. Salinity ranged from 0 to 60 upstream, and 35 to 54 mid- and downstream. A total of 573191 individuals (76 species) was observed or collected, with an average density of 6·5 fish m −2 . Engraulidae, Atherinidae, Poeciliidae and Cyprinodontidae numerically dominated the assemblage. Distinct assemblages occurred up-, mid- and downstream and maintained coherent groups in these gradient positions over the seasons. Residents totalled 94·5% of the individuals, estuarine transients comprised 5·1% and occasional marine visitors were less than 0·4%. Densities of resident fishes peaked in winter as temperatures and water levels fell, uncorrelated with changes in salinity. These observations suggest that mangrove habitats may sustain diverse and abundant fish communities dominated by euryhaline residents. Although estuarine transients were consistently rare in upstream sub-basins, downstream were found numerous sub-adults of species occurring as adults on nearby reefs (Lutjanidae, Haemulidae). Thus, reef-associated estuarine transients may be abundant in mangrove habitats having near-marine salinities. Contrary to expectations, mangrove habitats in northeastern Florida bay did not function as a nursery as defined under the nursery-ground paradigm: young-of-the-year juveniles of estuarine transient species did not seek low salinity sub-basins. However, northeastern Florida Bay may not be representative of most mangrove estuaries as the area: (1) is without lunar tides and related circulation; (2) has low and variable amounts of submersed vegetation; and (3) experiences severe hypersaline conditions.

Estuarine, Coastal and Shelf Science↗
USGS2000

Mercury biogeochemistry in the Idrija River, Slovenia, from above the mine into the Gulf of Trieste

The Idrija Mine is the second largest Hg mine in the world which operated for 500 years. Mercury (Hg)-laden tailings still line the banks, and the system is a threat to the Idrija River and water bodies downstream including the Soca/Isonzo River and the Gulf of Trieste in the northern Adriatic Sea. A multidisciplinary study was conducted in June 1998 on water samples collected throughout the Idrija and Soca River systems and waters and sediments in the Gulf. Total Hg in the Idrija River increased >20-fold downstream of the mine from <3 to >60 ng liter-1 with methyl mercury (MeHg) accounting for ~0.5%. Concentrations increased again downstream and into the estuary with MeHg accounting for nearly 1.5% of the total. While bacteria upstream of the mine did not contain mercury detoxification genes (mer), such genes were detected in bacteria collected downstream. Benthic macroinvertebrate diversity decreased downstream of the mine. Gulf waters near the river mouth contained up to 65 ng liter-1 total Hg with ~0.05 ng liter-1 MeHg. Gulf sediments near the river mouth contained 40 ??g g-1 total Hg with MeHg concentrations of about 3 ng g-1. Hg in sediment pore waters varied between 1 and 8 ng liter-1, with MeHg accounting for up to 85%. Hg methylation and MeHg demethylation were active in Gulf sediments with highest activities near the surface. MeHg was degraded by an oxidative pathway with >97% C released from MeHg as CO2. Hg methylation depth profiles resembled profiles of dissolved MeHg. Hg-laden waters still strongly impact the riverine, estuarine, and marine systems. Macroinvertebrates and bacteria in the Idrija River responded to Hg stress, and high Hg levels persist into the Gulf. Increases in total Hg and MeHg in the estuary demonstrate the remobilization of Hg, presumably as HgS dissolution and recycling. Gulf sediments actively produce MeHg, which enters bottom waters and presumably the marine food chain. (C) 2000 Academic Press.

Conference Paper↗
USGS2017

A late Holocene paleoecological record from Torrey Pines State Reserve, California

Paleoenvironments of the Torrey Pines State Reserve were reconstructed from a 3600-yr core from Los Peñasquitos Lagoon using fossil pollen, spores, charcoal, chemical stratigraphy, particle size, and magnetic susceptibility. Late Holocene sediments were radiocarbon dated, while the historical sediments were dated using sediment chemistry, fossil pollen, and historical records. At 3600 yr B.P., the estuary was a brackish-water lagoon. By 2800 yr B.P., Poaceae (grass) pollen increased to high levels, suggesting that the rising level of the core site led to its colonization by Spartina foliosa (cord-grass), the lowest-elevation plant type within regional estuaries. An increase in pollen and spores of moisture-dependent species suggests a climate with more available moisture after 2600 yr B.P. This change is similar to that found 280 km to the north at 3250 yr B.P., implying that regional climate changes were time-transgressive from north to south. Increased postsettlement sediment input resulted from nineteenth-century land disturbances caused by grazing and fire. Sedimentation rates increased further in the twentieth century due to closure of the estuarine mouth. The endemic Pinus torreyana (Torrey pine) was present at the site throughout this 3600-yr interval but was less numerous prior to 2100 yr B.P. This history may have contributed to the low genetic diversity of this species.

Quaternary Research↗
USGS2017

Radiocarbon dating, chronologic framework, and changes in accumulation rates of holocene estuarine sediments from Chesapeake Bay

Rapidly accumulating Holocene sediments in estuaries commonly are difficult to sample and date. In Chesapeake Bay, we obtained sediment cores as much as 20 m in length and used numerous radiocarbon ages measured by accelarator mass spectrometry methods to provide the first detailed chronologies of Holocene sediment accumulation in the bay. Carbon in these sediments is a complex mixture of materials from a variety of sources. Analyses of different components of the sediments show that total organic carbon ages are largely unreliable, because much of the carbon (including coal) has been transported to the bay from upstream sources and is older than sediments in which it was deposited. Mollusk shells (clams, oysters) and foraminifera appear to give reliable results, although reworking and burrowing are potential problems. Analyses of museum specimens collected alive before atmospheric nuclear testing suggest that the standard reservoir correction for marine samples is appropriate for middle to lower Chesapeake Bay. The biogenic carbonate radiocarbon ages are compatible with 210 Pb and 137 Cs data and pollen stratigraphy from the same sites. Post-settlement changes in sediment transport and accumulation is an important environmental issue in many estuaries, including the Chesapeake. Our data show that large variations in sediment mass accumulation rates occur among sites. At shallow water sites, local factors seem to control changes in accumulation rates with time. Our two relatively deep-water sites in the axial channel of the bay have different long-term average accumulation rates, but the history of sediment accumulation at these sites appears to reflect overall conditions in the bay. Mass accumulation rates at the two deep-water sites rapidly increased by about fourfold coincident with widespread land clearance for agriculture in the Chesapeake watershed.

Quaternary Research↗
USGS1985

Temporal fluctuations in grain size, organic materials and iron concentrations in intertidal surface sediment of San Francisco Bay

The physical and chemical characteristics of the oxidized surface sediment in an estuary fluctuate temporally in response to physical forces and apparently-fluctuating inputs. These characteristics, which include grain size and concentrations of organic materials and iron, will influence both trace-metal geochemistry and bioavailability. Temporal trends in the abundance of fine particles, total organic carbon content (TOC), absorbance of extractable organic material (EOM), and concentration of extractable iron in the sediment of San Francisco Bay were assessed using data sets containing approximately monthly samples for periods of two to seven years. Changes in wind velocity and runoff result in monthly changes in the abundance of fine particles in the intertidal zone. Fine-grained particles are most abundant in the late fall/early winter when runoff is elevated and wind velocities are low; particles are coarser in the summer when runoff is low and wind velocities are consistently high. Throughout the bay, TOC is linearly related to fine particle abundance (r = 0.61). Temporal variability occurs in this relationship, as particles are poor in TOC relative to percent of fine particles in the early rainy season. Iron-poor particles also appear to enter the estuary during high runoff periods; while iron is enriched on particle surfaces in the summer. Concentrations of extractable iron and absorbance of EOM vary strongly from year to year. Highest absorbances of EOM occurred in the first year following the drought in 1976-77, and in 1982 and 1983 when river discharge was unusually high. Extractable-iron concentrations were also highest in 1976-77, but were very low in 1982 and 1983.

California↗
USGS1996

Sediment quality triad assessment survey of the Galveston Bay, Texas system

To characterize the quality of sediments at key sites in the Galveston Bay Estuary, sediment samples were collected concurrently for chemical and physical analyses, toxicity testing and an assessment of benthic community structure. Significant toxicity, as determined by the sea urchin ( Arbacia punetulata ) pore water embryological development assay, was observed at 12 of the 24 sites investigated in this study. No toxicity was observed at any of the sites with the amphipod ( Grandidierella japonica ) solid-phase test. There were a number of sites with elevated levels of trace metals and petroleum hydrocarbons. The chemistry, toxicity and benthic data were ranked by station and a scaled rank sum was calculated to facilitate comparisons among the stations. Five sites exhibited strong evidence of contaminant-induced degradation, while 15 stations showed no evidence of contaminant-induced degradation. At eight additional sites the sediment quality triad (SQT) data indicated that unmeasured chemicals or conditions were stressing the system. Contaminant impacts could be reduced or eliminated by alternative regulatory and management practices, including the restriction of produced water discharges into coastal estuaries and the use of dredge material disposal practices that minimize the reintroduction of sediment-associated contaminants to the bays.

Texas↗
USGS1993

Nesting habitat of Belding’s Savannah sparrows in coastal salt marshes

Although the Belding’s Savannah sparrow ( Passerculus sandwichensis beldingl ) is listed as endangered in California, little is known about the factors that affect its abundance and distribution. Numbers of breeding pairs, nesting territory sizes, and vegetation characteristics were measured at fourteen study plots in two southern California coastal wetlands, Tijuana Estuary and Los Peñasquitos Lagoon. Sparrows nested in middle salt marsh habitat in areas of dense pickleweed ( Salicornia virginica ) or saltgrass ( Distichlis spicata ). No nesting territories were found in transitional upland or low marsh habitat. Territory sizes were highly variable and significantly larger at Tijuana Estuary. Territory size may be related to nest site availability and water levels at time of establishment. More research is needed on the effects of habitat quality on reproductive success and territory size.

California↗
USGS2008

Estuarine sediment transport by gravity-driven movement of the nepheloid layer, Long Island Sound

Interpretation of sidescan-sonar imagery provides evidence that down-slope gravity-driven movement of the nepheloid layer constitutes an important mode of transporting sediment into the basins of north-central Long Island Sound, a major US East Coast estuary. In the Western Basin, this transport mechanism has formed dendritic drainage systems characterized by branching patterns of low backscatter on the seafloor that exceed 7.4 km in length and progressively widen down-slope, reaching widths of over 0.6 km at their southern distal ends. Although much smaller, dendritic patterns of similar morphology are also present in the northwestern part of the Central Basin. Because many contaminants display affinities for adsorption onto fine-grained sediments, and because the Sound is affected by seasonal hypoxia, mechanisms and dispersal pathways by which inorganic and organic sediments are remobilized and transported impact the eventual fate of the contaminants and environmental health of the estuary.

Connecticut, Massachussetts, New York↗
USGS2024

In situ allelopathic expression by the invasive amphibious plant, Ludwigia hexapetala (water primrose) across habitat types, seasons, and salinities

Broad infestations of invasive, non-native vegetation have transformed wetlands around the world. Ludwigia hexapetala is a widespread, amphibious invasive plant with a creeping growth habit in open water and an erect growth habit in terrestrial habitats. In the upper San Francisco Estuary of California, L. hexapetala is increasingly terrestrializing into marshes and this expansion may be facilitated by allelopathy. We conducted the first field-based study on L. hexapetala allelopathy to determine whether (1) three allelochemicals known to be exuded by L. hexapetala are expressed in situ, (2) the allelochemicals are detectable in leaves, soil, and water, and (3) allelopathic expression varies by season, salinity, and growth habit (open water “patch” vs. terrestrial marsh “interface” locations). Water, soil, and L. hexapetala leaves were collected in two freshwater sites and two oligohaline sites in the upper San Francisco Estuary in summer 2021, fall 2021, and spring 2022. Myricitrin and quercitrin, known allelochemicals, and salipurposid, a newly identified polyphenol, were detected in water, soil, and leaves. There were significant differences in allelochemical concentrations under fresh versus oligohaline conditions in water and soil, but not leaves. All three allelochemicals generally had higher concentrations in patch versus interface locations, suggesting that L. hexapetala allelopathy plays a greater competitive role in open water than terrestrial habitats. Leaf concentrations of each allelochemical varied seasonally; however, both myricitrin and salipurposid had heightened concentrations in spring. These results suggest that herbicide application in early spring may be most effective in controlling L. hexapetala terrestrialization from open water to marshes.

California↗
USGS2016

A century of landscape disturbance and urbanization of the San Francisco Bay region affects the present-day genetic diversity of the California Ridgway’s rail (Rallus obsoletus obsoletus)

Fragmentation and loss of natural habitat have important consequences for wild populations and can negatively affect long-term viability and resilience to environmental change. Salt marsh obligate species, such as those that occupy the San Francisco Bay Estuary in western North America, occupy already impaired habitats as result of human development and modifications and are highly susceptible to increased habitat loss and fragmentation due to global climate change. We examined the genetic variation of the California Ridgway’s rail ( Rallus obsoletus obsoletus ), a state and federally endangered species that occurs within the fragmented salt marsh of the San Francisco Bay Estuary. We genotyped 107 rails across 11 microsatellite loci and a single mitochondrial gene to estimate genetic diversity and population structure among seven salt marsh fragments and assessed demographic connectivity by inferring patterns of gene flow and migration rates. We found pronounced genetic structuring among four geographically separate genetic clusters across the San Francisco Bay. Gene flow analyses supported a stepping stone model of gene flow from south-to-north. However, contemporary gene flow among the regional embayments was low. Genetic diversity among occupied salt marshes and genetic clusters were not significantly different. We detected low effective population sizes and significantly high relatedness among individuals within salt marshes. Preserving genetic diversity and connectivity throughout the San Francisco Bay may require attention to salt marsh restoration in the Central Bay where habitat is both most limited and most fragmented. Incorporating periodic genetic sampling into the management regime may help evaluate population trends and guide long-term management priorities.

California↗