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USGS2006

Spatial variations in fish-tissue mercury concentrations in the St. Croix River basin, Minnesota and Wisconsin, 2004

Parts of the St. Croix River in Minnesota and Wisconsin are under fish-consumption advisories because of elevated mercury concentrations that have been measured in fish from this river. The U.S. Geological Survey, National Park Service, and the University of Wisconsin, LaCrosse, cooperated in a study to determine the spatial variation of mercury in fish in the St. Croix River and selected tributaries. Game and nongame fish were collected at 14 sites during summer 2004 and identified to species. One hundred ninety-three (193) composite tissue samples were analyzed for total mercury as whole fish, skin-on fillet, or skin-off fillet. A model of mercury in fish was used to standardize fish-tissue mercury concentrations to a common species, tissues sampled, and length of fish allowing for more consistent comparisons among sites. Rush Creek near Rush City, Minnesota, was identified as having high median standardized fish-tissue mercury concentrations compared to other tributaries sampled. Previous studies identified Rush Creek as having high concentrations of methylmercury in water and high concentrations of total mercury in sediment when compared to other sites in the St. Croix River Basin. Sites in the St. Croix River Basin that drained forest/wetland watersheds had significantly higher median fish-tissue mercury concentrations than sites draining agricultural/forested watersheds (p=0.0003). There also was a significant relation between fish-tissue mercury concentration and methylmercury concentration in water (rho=0.580, p=0.02) and between fish-tissue mercury and total mercury in sediment (rho=0.569, p=0.03). Observed fish-tissue mercury concentrations exceeding the U.S. Environmental Protection Agency’s (USEPA) human-health criterion of 300 micrograms per kilogram occurred at 7 of the 14 sampling sites. The model predicted concentrations exceeding USEPA’s criterion at all of the seven sites where exceedances were observed and four of the seven sites where exceedances were not observed. The implication is that fish-consumption advisories that are based on observed concentrations (of a subset of the species that occur at the site or smaller fish) could underestimate the threat to human health. Using the model to predict fish-tissue mercury concentrations allows site-specific fish-consumption advisories to be developed for multiple species and different lengths of fish. Potential mercury exposure to fish consumers may be reduced because an individual can choose to consume sizes and species of fish that are expected to have lower fish-tissue mercury concentrations. The National Park Service can use these results to more reliably monitor fish-tissue mercury concentrations in the St. Croix River Basin and better assess potential health effects of fish consumption to humans and wildlife.

Minnesota, Wisconsin↗

USGS1985

Potential impacts of discharging tertiary-treated wastewater into Port Royal Sound, South Carolina

An assessment of physical characteristics of Port Royal Sound was combined with the results of a dye tracer study and with data collected from a previous environmental study to describe the impact on the water quality from discharging tertiary treated wastewater into the sound. Calculated velocities for the time of maximum velocity in the tidal cycle ranged from 2.32 ft/sec near the bottom to 4.65 ft/sec near the surface of the sound in a cross section in the vicinity of a proposed wastewater outfall. Vertical velocity distributions calculated for the time of maximum velocity were similar at all stations at which velocities were measured except the station in shallow water near the shore. A recent bathymetric chart of the vicinity of the proposed outfall indicates that a bar extends farther along the northern shore of Hilton Head Island than indicated on earlier nautical charts of Port Royal Sound. Continued extension of this bar could alter the impact on water quality from discharge of treated wastewater into the sound. Further study may be needed to monitor changes in the bar if the outfall is located between the bar and Hilton Head Island. Conservative calculations based on the results of the dye tracer study indicate that the discharge of 10.9 million gallons/day of wastewater having concentrations of biochemical oxygen demand and suspended solids of 15 mg/L will result in a maximum cumulative increase in concentrations of biochemical oxygen demand of < 0.01 mg/L and no increase in concentrations of suspended solids at high slack tide in the part of Port Royal Sound most affected by the proposed wastewater discharge. (Author 's abstract)

South Carolina↗

USGS2019

Scientific Framework for resilience research on the Upper Mississippi River System

The goal of this research framework is to outline research that would continue to improve our understanding of ecological resilience of the Upper Mississippi River System (UMRS) and inform management of the system for health and resilience. We provide a broad overview of recently completed and ongoing work that has been funded as a part of the UMRS Ecological Resilience Assessment and related efforts to provide context for how proposed research questions build upon our current knowledge and may inform restoration planning and design. We describe two primary objectives within this research framework - the first objective is to investigate hypothesized drivers and feedbacks related to specified resilience, and the second is to expand our utility of general resilience indicators through further development and evaluation. The intended audience for this framework is the Upper Mississippi River Restoration Program (UMRR). The UMRR partnership is made up of natural resource agencies from five states (Illinois, Iowa, Minnesota, Missouri and Wisconsin) and five federal agencies (U.S. Army Corps of Engineers, U.S. Environmental Protection Agency, U.S. Fish and Wildlife Service, U.S. Geological Survey, and USDA Natural Resources Conservation Service).

Illinois, Iowa, Minnesota, Missouri, Wisconsin↗

USGS2023

Migration, breeding location, and seascape shape seabird assemblages in the northern Gulf of Mexico

The Gulf of Mexico supports many seabird species, yet data gaps describing species composition and habitat use are prevalent. We used vessel-based observations from the Gulf of Mexico Marine Assessment Program for Protected Species to identify and characterize distinct seabird assemblages in the northern Gulf of Mexico (within the U.S. Exclusive Economic Zone; nGoM). Using cluster analysis of 17 seabird species, we identified assemblages based on seabird relative density. Vessel-based surveys documented the location, species, and number of seabirds across the nGoM between 2017–2019. For each assemblage, we identified the (co-)dominant species, spatial distribution, and areas of greater relative density. We also assessed the relationship of the total relative density within each assemblage with environmental, spatial, and temporal covariates. Of the species assessed, 76% (n = 13) breed predominantly outside the nGoM basin. We identified four seabird assemblages. Two assemblages, one dominated by black tern and the other co-dominated by northern gannet/laughing gull, occurred on the continental shelf. An assemblage dominated by sooty tern occurred along the continental slope into pelagic waters. The fourth assemblage had no dominant species, was broadly distributed, and was composed of observations with low relative density (‘singles’ assemblage). Differentiation of assemblages was linked to migratory patterns, residency, and breeding location. The spatial distributions and relationships of the black tern and northern gannet/laughing gull assemblages with environmental covariates indicate associations with river outflows and ports. The sooty tern assemblage overlapped an area prone to mesoscale feature formation. The singles assemblage may reflect commuting and dispersive behaviors. These findings highlight the importance of seasonal migrations and dynamic features across the seascape, shaping seabird assemblages. Considering the potential far-ranging effects of interactions with seabirds in the nGoM, awareness of these unique patterns and potential links with other fauna could inform future monitoring, research, restoration, offshore energy, and aquaculture development in this highly industrialized sea.

Gulf of Mexico↗

USGS2024

Climate change

Amphibian ecology and distribution are strongly correlated with climate. Regional patterns of amphibian biodiversity are intimately linked to temperature, evapotranspiration rate, and clines in humidity. While amphibians are and will continue to be adversely affected by recent and projected changes in climate, research suggests that adaptation may happen more slowly than the expected rate of environmental shifts. Here, we review conservation-relevant aspects of both realised and potential impacts of climate change, and outline options for amphibian conservation planning and management. Recent advances in our understanding of climate change impacts on amphibians have primarily stemmed from ecological modelling and direct assessment of climatic tolerances and dispersal capacities through physiological assays, landscape genetics, and dispersal tracking. Anthropogenic climate change has already altered amphibian assemblages and their impacts on ecosystem functioning and services. Because of known and hypothesised ecological tolerances, many amphibians might have reached or exceeded most limits in their ability to adapt to or tolerate further climate change, however the uncertainties are substantial. Implementation of conservation planning and action can help to forestall severe impacts of environmental shifts. Scientific research and science-based decision-making and policy development have already lagged; the current pace of conservation planning and action may not allow for effective identification of threats and mitigation. An increased response rate could help to avert further loss of amphibian biodiversity and decay of ecosystem services. The lack of basic field research in natural habitats continues to be an underlying challenge. We suggest priority areas of research to include the development of biologically realistic predictive models of amphibian response to climate change, field verification of model estimates and key parameters, population monitoring across multiple sites and taxa, and a combination of efforts within and across ecosystems to understand how impacts of climate change can be better mitigated.

Book chapter↗

USGS2000

Evaluation of the immunological and hematological effects of chronic exposure of adult Peromyscus leucopus to Aroclor 1254 at concentrations equivalent to those at contaminated sites

Polychlorinated biphenyls are known to cause adverse health effects to biological systems; however, limited data is available on their effects on the immune system of wild species. Previous work by our lab found that 4 and 6-week old white-footed mice (Perornyscus leucopus) born from dams injected with a single dose (300 mg/kg) of Aroclor 1254, had altered immunological, hematological, and biochemical responses. The present study examines various immunological parameters of 22-week old white footed mice born from dams chronically exposed to Aroclor 1254 at concentrations equivalent to those at contaminated sites. Females were fed diets containing either Aroclor 1254 in corn oil or corn off only, for 3 months, then bred; pups were maintained on the same diets as their mothers. At 22 weeks of age, 31 of the young Peromyscus were analyzed. Body and organ weights were taken and immune function was evaluated by assessing blood profiles, cellularity of thymus and spleen, antibody response to the antigen DNP-KLH, and the in vitro proliferative response to the T-cell mitogen Conconavalin A (Con A). Liver weights and liver to body weight ratios in the treated mice were significantly higher compared to controls, while the combined weights of the adrenal glands were significantly lower. In addition, the number of thymocytes in the treated mice was significantly lower than that of the controls; however, thymocytes of treated mice had a higher degree of proliferation to Con A. Taken together, these results and those obtained from our previous study, indicate that monitoring of vulnerable immunological parameters in white-footed mice may be a useful indicator of exposure.

Society of Environmental Toxicology and Chemistry,↗

USGS2012

Parking lot runoff quality and treatment efficiencies of a hydrodynamic-settling device in Madison, Wisconsin, 2005-6

A hydrodynamic-settling device was installed in 2004 to treat stormwater runoff from a roof and parking lot located at the Water Utility Administration Building in Madison, Wis. The U.S. Geological Survey, in cooperation with the Wisconsin Department of Natural Resources, the City of Madison, cities in the Waukesha Permit Group, Hydro International, Earth Tech, Inc., National Sanitation Foundation International, and the U.S. Environmental Protection Agency, monitored the device from November 2005 through September 2006 to evaluate it as part of the U.S. Environmental Protection Agency's Environmental Technology Verification Program. Twenty-three runoff events monitored for flow volume and water quality at the device's inlet and outlet were used to calculate the percentage of pollutant reduction for the device. The geometric mean concentrations of suspended sediment (SS), "adjusted" total suspended solids (TSS), total phosphorus (TP), dissolved phosphorus (DP), total recoverable zinc (TZn), and total recoverable copper (TCu) measured at the inlet were 107 mg/L (milligrams per liter), 92 mg/L, 0.17 mg/L, 0.05 mg/L, 38 μg/L (micrograms per liter), and 12 μg/L, respectively, and these concentrations are in the range of values observed in stormwater runoff from other parking lots in Wisconsin and Michigan. Efficiency of the settling device was calculated using the efficiency ratio and summation of loads (SOL) methods. Using the efficiency ratio method, the device reduced concentrations of SS, and DP, by 19, and 15, percent, respectively. Using the efficiency ratio method, the device increased "adjusted" TSS and TZn concentrations by 5 and 19, respectively. Bypass occurred for 3 of the 23 runoff events used in this assessment, and the bypass flow and water-quality concentrations were used to determine the efficiency of the bypass system. Concentrations of SS, "adjusted" TSS, and DP were reduced for the system by 18, 5, and 18, respectively; however, TZn increased by 5 percent. Some of the TSS concentrations were "adjusted" to add the particles that remained on the sieves during sample processing. The loads of SS, "adjusted" TSS, and DP were reduced using the SOL method for the settling device by 38, 9, and 19 percent, respectively, and TZn increased by 13 percent. For the bypass system, the loads of SS, "adjusted" TSS, and DP had percentage reductions of 39, 12, 22, respectively, however TZn increased by 4 percent. The SOL method produced percentage reductions for SS and 'adjusted" TSS that were twice those for the efficiency ratio method. Removing the two large runoff events on August 23 and 24, 2006, from the SOL calculation brought the reduction for SS down to 16 and increased "adjusted" TSS by 4 percent. The two large runoff events were anomalies in that the runoff volumes and dissolved solids concentrations were greatly increased by overflow from an adjacent recycling facility. The SOL method was used to determine the percentage of SS load reduction for six different particle sizes for both the settling device and bypass system. Essentially no load reduction was observed for particles less than 125 micrometers (μm) in diameter, and about a 90-percent reduction occurred for particle sizes greater than 250 μm in diameter. The large removal efficiencies for particle sizes greater than 250 μm in diameter were further supported by the fact that more than 80 percent of the particle sizes trapped in the sump were greater than 250 μm in diameter. These results support the claim by the manufacturer of achieving a large percentage load reduction for particle sizes greater than 250 μm in diameter.

Wisconsin↗

USGS2010

Baseline survey for rare plant species and native plant communities within the Kamehameha Schools 'Lupea Safe Harbor Planning Project Area, North Kona District, Island of Hawai'i

Kamehameha Schools, in conjunction with several federal, state, and private organizations, has proposed to conduct conservation management on approximately 5,340 ha (~13,200 acres) of land they own in the vicinity of Kīpukalupea in the North Kona District on the island of Hawai'i. The goal of this program is to restore and enhance the habitat to benefit native plant and animal populations that are currently, or were formerly, found in this site. The initial phase of this project has been focused on various activities including conducting baseline surveys for bird and plant species so Kamehameha Schools could develop a Safe Harbor Agreement (SHA) for the proposed project lands relative to the habitat management and species reintroduction efforts they would like to conduct in the Lupea Project area. This report summarizes methods that were used to collect field data on plant species and communities within the project area, and the results of that initial survey. The information was used to calculate baseline values for all listed threatened or endangered plant species found, or expected to be found, within the project area, and to design a monitoring program to assess changes in plant communities and rare plant species relative to management activities over the duration of the SHA. The Lupea Project area contains excellent examples of several high elevation native plant communities including montane dry forest and woodland, native subalpine shrubland, and native grassland. Between November 2003 and January 2004 we sampled plant communities and species along seven transects established through the project area. A total of 109 plant species were found during this survey, within the transect grid and in nearby areas. Forty-four of these plants are endemic species, 21 are indigenous species, 43 are introduced, and one species is believed to have been introduced to Hawai&bdquo;i by early Polynesian settlers. Only one federally listed Endangered plant, Asplenium peruvianum var. insulare , was found within the survey area. Additionally, we found one immature plant that may be Sicyos macrophyllus , a candidate species for listing. However, we were not able to make a definite determination of this species‟ identity since it did not have fruits or flowers. Finally, we documented four plant species within the survey area that have no official status designation but are considered to be rare and informally recognized as “species of concern” (SOC) as they appear to be declining in distribution and abundance statewide. These included Chamaesyce olowaluana, Eragrostis deflexa, Sisyrinchium acre, and Tetramolopium consanguineum . In addition to conducting field surveys, we performed a query on a spatial database developed by Dr. Jonathan Price of the University of Hawai&bdquo;i at Hilo which models the potential range of all native Hawaiian plant species based on historic observations and a set of environmental parameters. The potential species list for the Lupea Project area includes 47 taxa that we did not find during our surveys, as well as three other listed species that were not modeled by Price, but known from historic records in adjacent habitats. Some of these species are extremely rare or, in some cases have been locally extirpated. However, most of the plants that were predicted but not found during our surveys are expected to be located with additional searching, or may potentially recolonize the area following the elimination of ungulates and initiation of other restoration efforts. Forty-four introduced plant species were found within the survey area, seven of which are considered to be highly invasive. These include the grasses Pennisetum clandestinum and Pennisetum setaceum , vines Delairea odorata and Passiflora tarminiana , herbs Senecio madagascariensis and Verbascum thapsus , and the shrub Rubus niveus . Non-zero baseline values are proposed for the one listed plant species found within the Lupea Project area, one species that is a candidate for listing, and the four other rare species we found that may be considered for listing in the future. Additionally, a zero baseline is proposed for 23 other species that were predicted, but not found within the project area. These include 14 Endangered species, one Threatened species, two candidates for listing, and six species of concern. Subsequent monitoring of the site will be necessary to determine if the populations of these species have increased or decreased relative to their baseline values. It is presumed that the management activities Kamehameha Schools has proposed for this area, particularly removal of the ungulates and weed control, will provide a benefit to the habitat as a whole and allow for natural regeneration and maintenance of the all elements of the plant communities found there.

Hawaii↗

USGS2026

Towards global mapping of dynamic surface water extents using Sentinel-1 SAR data

We introduce a fully automated and scalable method for mapping surface water extents from single-acquisition Sentinel-1 synthetic aperture radar (SAR) imagery. This approach integrates adaptive thresholding of radiometric terrain-corrected SAR backscatter data, fuzzy-logic classification, region growing, dark land estimation, and a bimodality test to minimize false positives in low-backscattering areas and false negatives in high-backscattering areas. By combining these steps, the algorithm achieves classification accuracies exceeding 85% in detecting surface water extents across diverse environmental conditions. Accuracy was first assessed at meter scale using 52 PlanetScope scenes acquired worldwide in September–October 2019; the algorithm achieved 93% overall accuracy, 86% user's accuracy, and 94% producer's accuracy. Global robustness was then evaluated by processing every Sentinel-1 acquisition from 1 to 12 November 2023 and cross-comparing the resulting maps with 6561 temporally matched observational products for end-users from remote sensing analysis (OPERA) dynamic surface water extent from Harmonized Landsat and Sentinel-2 (DSWx-HLS) products. This large-scale test yielded 90% user's and 94% producer's accuracies, confirming reliable performance at continental extent. Additional case studies demonstrate the algorithm's ability to handle surface water extent in sand-dominated deserts, to track seasonal amplitude in Folsom Lake (California), drought-induced loss in Cerro Prieto Reservoir (Mexico), and rapid filling of the Grand Ethiopian Renaissance Dam. These results show that the method scales across local to global domains and maintains high accuracy, providing a practical tool for near-real-time monitoring of floods, droughts, and water-resource management. Because the approach is sensor-agnostic, it can be ported to forthcoming L- and S-band missions such as NASA-ISRO synthetic aperture radar (NISAR), broadening its applicability to future hydrologic observations.

Remote Sensing of Environment↗

USGS2022

Tapwater exposures, effects potential, and residential risk management in Northern Plains Nations

In the United States (US), private-supply tapwater (TW) is rarely monitored. This data gap undermines individual/community risk-management decision-making, leading to an increased probability of unrecognized contaminant exposures in rural and remote locations that rely on private wells. We assessed point-of-use (POU) TW in three northern plains Tribal Nations, where ongoing TW arsenic (As) interventions include expansion of small community water systems and POU adsorptive-media treatment for Strong Heart Water Study participants. Samples from 34 private-well and 22 public-supply sites were analyzed for 476 organics, 34 inorganics, and 3 in vitro bioactivities. 63 organics and 30 inorganics were detected. Arsenic, uranium (U), and lead (Pb) were detected in 54%, 43%, and 20% of samples, respectively. Concentrations equivalent to public-supply maximum contaminant level(s) (MCL) were exceeded only in untreated private-well samples (As 47%, U 3%). Precautionary health-based screening levels were exceeded frequently, due to inorganics in private supplies and chlorine-based disinfection byproducts in public supplies. The results indicate that simultaneous exposures to co-occurring TW contaminants are common, warranting consideration of expanded source, point-of-entry, or POU treatment(s). This study illustrates the importance of increased monitoring of private-well TW, employing a broad, environmentally informative analytical scope, to reduce the risks of unrecognized contaminant exposures.

North Dakota, South Dakota↗

USGS2024

U.S. Geological Survey climate science plan—Future research directions

Executive Summary Climate is the primary driver of environmental change and is a key consideration in defining science priorities conducted across all mission areas in the U.S. Geological Survey (USGS). Recognizing the importance of climate change to its future research agenda, the USGS’s Climate Science Steering Committee requested the development of a Climate Science Plan to identify future research directions. Subject matter experts from across the Bureau formed the USGS Climate Science Plan Writing Team, which convened in September 2022 to identify and outline the major climate science topics of future concern and develop an integrated approach to conducting climate science in support of the USGS and U.S. Department of the Interior missions. The resulting USGS Climate Science Plan identifies three major priorities under which USGS climate science proceeds: (1) characterize climate change and associated impacts, (2) assess climate change risks and develop approaches to mitigate climate change, and (3) provide climate science tools and support. The Climate Science Plan identifies 12 specific goals to achieve the outcomes of the three priorities. Conduct long-term, broad-scale, and multidisciplinary measurements and monitoring and research activities to define, quantify, and predict the impacts of climate change on natural and human systems; Provide leadership to standardize measuring, monitoring, reporting, and verifying greenhouse gas emissions, lateral carbon fluxes, and carbon sinks across lands managed by the U.S. Department of the Interior (DOI); Provide science capacity, training, tools, and infrastructure to Tribal partners; support Tribal-led science initiatives; Conduct climate change research in partnership with the broader climate science community; Develop improved data synthesis methods through collaborative and open science across mission areas and between the USGS and agency partners; Translate climate change impacts into risk assessments in support of risk management strategies; Develop new and improved risk assessments, models, and approaches for mitigating climate change, adapting to its impacts, and reducing uncertainties; design early warning systems for risk mitigation; Investigate climate change mitigation strategies and create decision science support tools to inform climate change mitigation and adaptation; Provide a framework that facilitates knowledge co-production needed to inform policy decisions; Provide access to USGS data and information through novel integration and visualization approaches; Build capacity within USGS and DOI through development of scientific training curricula; and Coordinate science and capacity building efforts broadly across the Federal Government. To achieve these goals, the USGS Climate Science Plan also outlines climate science guidelines—key elements for conducting climate-based research—as well as emerging opportunities to support successful climate science. The USGS Climate Science Plan provided in this circular will guide future research priorities and science-support investments, as well as continued development of the climate workforce for decades to come, ensuring that the USGS continues to serve as one of the Nation’s leading climate science agencies.

Circular↗

USGS2021

Global application of an unoccupied aerial vehicle photogrammetry protocol for predicting aboveground biomass in non-forest ecosystems

Non-forest ecosystems, dominated by shrubs, grasses and herbaceous plants, provide ecosystem services including carbon sequestration and forage for grazing, and are highly sensitive to climatic changes. Yet these ecosystems are poorly represented in remotely sensed biomass products and are undersampled by in situ monitoring. Current global change threats emphasize the need for new tools to capture biomass change in non-forest ecosystems at appropriate scales. Here we developed and deployed a new protocol for photogrammetric height using unoccupied aerial vehicle (UAV) images to test its capability for delivering standardized measurements of biomass across a globally distributed field experiment. We assessed whether canopy height inferred from UAV photogrammetry allows the prediction of aboveground biomass (AGB) across low-stature plant species by conducting 38 photogrammetric surveys over 741 harvested plots to sample 50 species. We found mean canopy height was strongly predictive of AGB across species, with a median adjusted R 2 of 0.87 (ranging from 0.46 to 0.99) and median prediction error from leave-one-out cross-validation of 3.9%. Biomass per-unit-of-height was similar within but different among, plant functional types. We found that photogrammetric reconstructions of canopy height were sensitive to wind speed but not sun elevation during surveys. We demonstrated that our photogrammetric approach produced generalizable measurements across growth forms and environmental settings and yielded accuracies as good as those obtained from in situ approaches. We demonstrate that using a standardized approach for UAV photogrammetry can deliver accurate AGB estimates across a wide range of dynamic and heterogeneous ecosystems. Many academic and land management institutions have the technical capacity to deploy these approaches over extents of 1–10 ha −1 . Photogrammetric approaches could provide much-needed information required to calibrate and validate the vegetation models and satellite-derived biomass products that are essential to understand vulnerable and understudied non-forested ecosystems around the globe.

Remote Sensing in Ecology and Conservation↗

USGS2024

Assessing spatial variability of nutrients, phytoplankton, and related water-quality constituents in the California Sacramento–San Joaquin Delta at the landscape scale—2018 high resolution mapping surveys

Executive Summary This study examined the abundance and distribution of nutrients and phytoplankton in the tidal aquatic environments of the Sacramento–San Joaquin Delta (Delta) and Suisun Bay, comprising three spatial surveys conducted in May, July, and October of 2018 that used continuous underway high frequency sampling and measurements onboard a high-speed boat to characterize spatial variation across the extent of the Delta. The method used involves simultaneously collecting information about the concentration and spatial distribution of all major nutrient forms with analogous information about the major classes of phytoplankton and associated water-quality conditions. The results showed substantial variation across space and time, providing an unprecedented snapshot of the dynamic environmental processes that shape the ways nutrients interact with and affect aquatic habitats in the Delta. The purposes of this study were to improve our understanding of how hydrodynamics, landscape features, and aquatic primary productivity interact to drive nutrient cycling and transport in the Delta and to provide insights into the underlying processes most directly responsible for the conditions at the time of this study, and thus into the range of conditions that may be expected following the wide array of prospective future changes to the Delta. One major anticipated change at the time of this study was the planned upgrade to the Sacramento Regional Wastewater Treatment Plant, but the study also informs our understanding of potential effects from other changes to the Delta, such as those caused by other nutrient-management actions, flow actions, large-scale wetland restoration, drought, flood, levee failure, and changes to water management. Nutrient loading is the primary driver of nutrient concentrations in the Delta, but several other major drivers interact to shape their distribution and effects: geomorphology, hydrodynamics, landscape features, and aquatic productivity. Hydrodynamics affect timescales of transport and dilution of nutrient loads in the Delta. During transit through the system, channel geometry, tidal mixing, and water exports affect hydrodynamics in diverse ways that influence water-residence and transport times, thereby markedly affecting the range of times during which natural internal cycling can alter nutrient concentrations and forms. Channel geometry and location shape tidal energy and river currents into these observed dynamics. Interactions with Delta aquatic landscapes such as herbaceous tidal marsh, submerged aquatic vegetation, and large expanses of intertidal or subtidal sediments (all highly productive landscapes) exert demand on available nutrient supplies but can also simultaneously transform and generate nutrients. Finally, while phytoplankton require nutrients to sustain production and thus are a potential nutrient sink, the amount and form of nutrients also can influence the occurrence of harmful algal blooms (HABs) that adversely affect aquatic organisms as well as affect the occurrence of beneficial algal blooms that result in production of algae that are favorable for imperiled Delta pelagic aquatic food webs. The surveys revealed a complex mosaic of spatial variation, with nutrient concentrations varying from near zero to well above concentrations considered eutrophic; nutrient concentrations were more often related to the extent of hydrologic transport and mixing than to specific geographic locations or to specific landscape features. Similarly, the surveys identified phytoplankton abundance ranging from near detection to the level of large phytoplankton blooms, with large variation in phytoplankton community composition. Although the study occurred during a period of low bloom activity, phytoplankton productivity appeared to be the strongest potential sink for inorganic nutrients in the Delta, indicating that it is a larger control on nutrient concentrations and distribution than previously understood. Cycling and transformation within the water column only appeared to substantially lower total nutrient concentrations at the longest estimated transport timescales. Contrary to expectations, we did not observe substantial nutrient depletion near landscape-scale features such as open-water habitats, submerged aquatic vegetation beds, extensive wetlands, or exposed sediments, indicating that these habitat types did not act as major sinks for nutrients in the Delta during these surveys. These results indicated that nutrient reduction efforts may have the greatest effect on pelagic phytoplankton productivity in the more productive reaches of the Delta and estuary, but these effects are unlikely to be magnified by changes to nutrient loss within the Delta over conceivable changes in flow conditions, Delta water management actions, or large-scale wetland restoration activities. Nevertheless, local processes were shown to cause substantial loss, and thus integrating of nutrient effects with other indicators of aquatic habitat conditions will help inform planning future actions at specific sites. Finally, we note that the primary contribution of this study was intended to be the survey data themselves. Aside from the results highlighted in this report, the surveys are a benchmark against which future environmental change may be evaluated, including changes to nutrient management or water exports, drought, large-scale wetland restoration, and climate change. Further, although we highlight some of the main findings from the surveys in this report, the necessarily limited scope precludes examination of many topics for which these surveys may be highly informative. To facilitate the utility of these data to stakeholders, managers, and researchers, we have released the data online (Bergamaschi and others, 2020) and created an online data exploration portal ( https://ca.water.usgs.gov/bay-delta/2018-delta-wide-mapping-surveys.html ) where users may query the surveys in a variety of ways to test hypotheses, examine relationships, assess spatial trends, and download data. The data exploration portal is intended to be an immersive experience that allows users to gain greater understanding of the complex interactions that shape Delta aquatic environments. This report is intended as a companion to the portal, allowing the reader to challenge and further explore the highlighted findings. This study was a collaboration between the U.S. Geological Survey and the Delta Regional Monitoring Program, with additional funding provided from U.S. Geological Survey Cooperative Matching Funds Program.

California↗

USGS2003

Preliminary assessment of DOC and THM precursor loads from a freshwater restored wetland, an agricultural field, and a tidal wetland in the Sacramento-San Joaquin River Delta

Water exported from the Sacramento-San Joaquin River Delta supplies drinking water to more than 22 million people in California. At certain times of the year, Delta waters contain relatively high concentrations of dissolved organic carbon (DOC) and bromide. During these times, chlorination of Delta water for drinking water disinfection will form disinfection byproducts, such as trihalomethanes (THMs), that can exceed the U.S. Environmental Protection Agency's maximum contaminant level for THMs of 80 mg/L. Important sources of DOC and THM precursors (types of DOC that form THMs when chlorinated) to the Delta include rivers, drainage water from peat islands, water from wetlands and areas with extensive riparian vegetation, and in-channel growth of algae and macrophytes. Due to proposed ecosystem restoration and creation of wetlands in the Delta, there is an urgent need for information on the relative loads of DOC and THM precursors produced from three different land uses: restored wetlands constructed for subsidence mitigation, tidal wetlands, and agricultural operations. We have been conducting research in the Delta to provide this information. A restored wetland and agricultural field located on Twitchell Island, and a tidal wetland on Browns Island have been monitored for flow, DOC, and THM precursors. Initial results indicate that the loads of DOC and THM precursors are similar for the restored wetland (surface water only) and the agricultural field. These land uses produce DOC loads of about 14 and 11 g C/m2/yr, respectively, and THM precursor loads of about 1.7 and 1.0 g THM/m2/yr, respectively. Estimates of DOC and THM precursor loads for the tidal wetland site on Browns Island and seepage associated with the restored wetland are being developed.

Conference Paper↗

USGS2013

Assessment of spectral band impact on intercalibration over desert sites using simulation based on EO-1 Hyperion data

Since the beginning of the 1990s, stable desert sites have been used for the calibration monitoring of many different sensors. Many attempts at sensor intercalibration have been also conducted using these stable desert sites. As a result, site characterization techniques and the quality of intercalibration techniques have gradually improved over the years. More recently, the Committee on Earth Observation Satellites has recommended a list of reference pseudo-invariant calibration sites for frequent image acquisition by multiple agencies. In general, intercalibration should use well-known or spectrally flat reference. The reflectance profile of desert sites, however, might not be flat or well characterized (from a fine spectral point of view). The aim of this paper is to assess the expected accuracy that can be reached when using desert sites for intercalibration. In order to have a well-mastered estimation of different errors or error sources, this study is performed with simulated data from a hyperspectral sensor. Earth Observing-1 Hyperion images are chosen to provide the simulation input data. Two different cases of intercalibration are considered, namely, Landsat 7 Enhanced Thematic Mapper Plus with Terra Moderate Resolution Imaging Spectroradiometer (MODIS) and Environmental Satellite MEdium Resolution Imaging Spectrometer (MERIS) with Aqua MODIS. The simulation results have confirmed that intercalibration accuracy of 1% to 2% can be achieved between sensors, provided there are a sufficient number of available measurements. The simulated intercalibrations allow explaining results obtained during real intercalibration exercises and to establish some recommendations for the use of desert sites for intercalibration.

IEEE Transactions on Geoscience and Remote Sensing↗

USGS1996

Concentrations and transport of atrazine in the Delaware River-Perry Lake system, northeast Kansas, July 1993 through September 1995

A study of the distribution and transport of atrazine in surface water in the 1,117 square-mile Delaware River Basin in northeast Kansas was conducted from July 1992 through September 1995. The purpose of this report is to present information to assess the present (1992-95) con ditions and possible future changes in the distri bution and magnitude of atrazine concentrations, loads, and yields spatially, temporally, and in rela tion to hydrologic conditions and land-use characteristics. A network of 11 stream-monitoring and sam-ple-collection sites was established within the basin. Stream-water samples were collected during a wide range of hydrologic conditions throughout the study. Nearly 5,000 samples were analyzed by enzyme-linked immunosorbent assay (ELISA) for triazine herbicide concentrations. Daily mean triazine herbicide concentrations were calculated for all sampling sites and subsequently used to estimate daily mean atrazine concentrations with a linear-regression relation between ELISA-derived triazine concentrations and atrazine concentrations determined by gas chromatography/mass spectrometry for 141 dual-analyzed surface-water samples. During May, June, and July, time-weighted, daily mean atrazine concentrations in streams in the Delaware River Basin commonly exceeded the value of the 3.0-μg/L (micrograms per liter) annual mean Maximum Contaminant Level (MCL) established by the U.S. Environmental Protection Agency for drinking-water supplies. Time-weighted, daily mean concentrations equal to or greater than 20 μg/L were not uncommon. However, most time-weighted, daily mean concentrations were less than 1.0 μg/L from August through April. The largest time-weighted, monthly mean atrazine concentrations occurred during May, June, and July. Most monthly mean concentrations between August and April were less than 0.50 μg/L. Large differences were documented in monthly mean concentrations within the basin. Sites receiving runoff from the northern and northeastern parts of the Delaware River Basin had the largest monthly and annual mean atrazine concentrations. Time-weighted, annual mean atrazine concen trations did not exceed the MCL in water from any sampling site for either the 1993 or 1994 crop years (April—March); however, concentrations were larger during 1994 than during 1993. Time- weighted, annual mean concentrations in water from among the 11 sampling sites during the 1993 crop year ranged from 0.27 to 1.5 μg/L and from 0.36 to 2.8 μg/L during the 1994 crop year. Fur thermore, concentrations in samples from the out- flow of Perry Lake were larger during the first 6 months of the 1995 crop year than during the previous year. Flow-weighted, annual mean atrazine concentrations were larger than time-weighted, annual mean concentrations in water from all sampling sites upstream of Perry Lake, and samples from several sites had concentrations that were substantially larger than the MCL. This difference explained why time-weighted, annual mean concentrations in the outflow of Perry Lake were larger than corresponding time-weighted concentrations in water from sampling sites upstream of Perry Lake. Flow-weighted, annual mean concentrations in water from among the 11 sampling sites during the 1993 crop year ranged from 1.0 to 4.4 and from 1.0 to 8.9 μg/L during the 1994 crop year. Statistically significant linear-regression equa tions were identified relating the percentage of subbasin in cropland to time- and flow-weighted, average annual mean atrazine concentrations. The relations indicate that time-weighted, average annual mean atrazine concentrations may not exceed the MCL in water from subbasins with at least about 70-percent cropland. However, flow- weighted, average annual mean atrazine concen trations may exceed the MCL when the percent- age of cropland is greater than about 40 percent. Approximately 90 percent of the annual atrazine load is transported from May through July. Atrazine loads and yields were larger during the 1993 crop year than during the 1994 crop year because of much greater runoff in 1993. Yields at sampling sites upstream of Perry Lake ranged from 2.4 to 17 lb/mi2 (pounds per square mile) during the 1993 crop year and from 0.29 to 4.4 lb/mi2 during the 1994 crop year. Loads and yields were largest at sampling sites receiving runoff from the northern and northeastern parts of the Delaware River Basin. A statistically significant linear-regression equation was identified relating percentage of subbasin in cropland to atrazine yields. About 283,000 lb (pounds) of atrazine are applied each year in the Delaware River Basin. Annual atrazine loads (5,200 and 2,000 lb), yields (4.7 and 1.8 lb/mi2), and transport ratios (1.8 and 0.7 percent) were estimated for the entire Delaware River Basin for the 1993 and 1994 crop years, respectively. Differences between the 1993 and 1994 crop years are the result of differences in rainfall amounds and subsequent runoff volumes.

Kansas↗

USGS2010

Factors Affecting Specific-Capacity Tests and their Application--A Study of Six Low-Yielding Wells in Fractured-Bedrock Aquifers in Pennsylvania

This report by the U.S. Geological Survey, prepared in cooperation with the Pennsylvania Department of Environmental Protection, Bureau of Mining and Reclamation, evaluates factors affecting the application of specific-capacity tests in six low-yielding water wells in areas of coal mining or quarrying in Pennsylvania. Factors such as pumping rate, duration of pumping, aquifer properties, wellbore storage, and turbulent flow were assessed by theoretical analysis and by completing multiple well tests, selected to be representative of low-yielding household-supply wells in areas of active coal mining or quarrying. All six wells were completed in fractured-bedrock aquifers--five in coal-bearing shale, siltstone, sandstone, limestone, and coal of Pennsylvanian and Permian age and one in limestone of Cambrian age. The wells were pumped 24 times during 2007-09 at rates from 0.57 to 14 gallons per minute during tests lasting from 22 to 240 minutes. Geophysical logging and video surveys also were completed to determine the depth, casing length, and location of water-yielding zones in each of the test wells, and seasonal water-level changes were measured during 2007-09 by continuous monitoring at each well. The tests indicated that specific-capacity values were reproducible within about ? 20 percent if the tests were completed at the same pumping rate and duration. A change in pumping duration, pumping rate, or saturated aquifer thickness can have a substantial effect on the comparability of repeated tests. The largest effect was caused by a change in aquifer thickness in well YO 1222 causing specific capacity from repeated tests to vary by a factor of about 50. An increase in the duration of pumping from 60 to 180 minutes caused as much as a 62 percent decrease in specific capacity. The effect of differing pumping rates on specific capacity depends on whether or not the larger rate causes the water level in the well to fall below a major water-yielding zone; when this decline happened at well CA 462, specific capacity was reduced by about 63 percent. Estimates of the maximum yield for low-yielding wells that are computed by multiplying the available drawdown by the specific-capacity value may contain large errors if the wells were pumped at low rates that do not cause much water-level drawdown. The estimates of yield are likely to be too large because the effects of lowering the water level in the well below water-yielding zones have not been incorporated. Better yield estimates can be made by the use of step-drawdown tests or by over-pumping at a rate large enough to dewater most of the wellbore. The maximum well yield, after overpumping, can be estimated from the rate of water-level recovery or by subtracting the incremental rate of change of borehole storage at the end of the test from the pumping rate.

Pennsylvania↗

USGS2016

Streamflow and estimated loads of phosphorus and dissolved and suspended solids from selected tributaries to Lake Ontario, New York, water years 2012–14

This report presents results of the evaluation and interpretation of hydrologic and water-quality data collected as part of a cooperative program between the U.S. Geological Survey and the U.S. Environmental Protection Agency. Streamflow, phosphorus, and solids dissolved and suspended in stream water were the focus of monitoring by the U.S. Geological Survey at 10 sites on 9 selected tributaries to Lake Ontario during the period from October 2011 through September 2014. Streamflow yields (flow per unit area) were the highest from the Salmon River Basin due to sustained yields from the Tug Hill aquifer. The Eighteenmile Creek streamflow yields also were high as a result of sustained base flow contributions from a dam just upstream of the U.S. Geological Survey monitoring station at Burt. The lowest streamflow yields were measured in the Honeoye Creek Basin, which reflects a decrease in flow because of withdrawals from Canadice and Hemlock Lakes for the water supply of the City of Rochester. The Eighteenmile Creek and Oak Orchard Creek Basins had relatively high yields due in part to groundwater contributions from the Niagara Escarpment and seasonal releases from the New York State Barge Canal. Annual constituent yields (load per unit area) of suspended solids, phosphorus, orthophosphate, and dissolved solids were computed to assess the relative contributions and allow direct comparison of loads among the monitored basins. High yields of total suspended solids were attributed to agricultural land use in highly erodible soils at all sites. The Genesee River, Irondequoit Creek, and Honeoye Creek had the highest concentrations and largest mean yields of total suspended solids (165 short tons per square mile [t/mi 2 ], 184 t/mi 2 , and 89.7 t/mi 2 , respectively) of the study sites. Samples from Eighteenmile Creek, Oak Orchard Creek at Kenyonville, and Irondequoit Creek had the highest concentrations and largest mean yields of phosphorus (0.27 t/mi 2 , 0.26 t/mi 2 , and 0.20 t/mi 2 , respectively) and orthophosphate (0.17 t/mi 2 , 0.13 t/mi 2 , and 0.04 t/mi 2 , respectively) of the study sites. These results were attributed to a combination of sources, including discharges from wastewater treatment plants, diversions from the New York State Barge Canal, and manure and fertilizers applied to agricultural land. Yields of phosphorus also were high in the Genesee River Basin (0.17 t/mi 2 ) and were presumably associated with nutrient and sediment transport from agricultural land and from streambank erosion. The Salmon and Black Rivers, which drain a substantial amount of forested land and are influenced by large groundwater discharges, had the lowest concentrations and yields of phosphorus and orthophosphate of the study sites. Mean annual yields of dissolved solids were the highest in Irondequoit Creek due to a high percentage of urbanized area in the basin and in Oak Orchard Creek at Kenyonville and in Eighteenmile Creek due to groundwater contributions from the Niagara Escarpment. High yields of dissolved solids of 840 t/mi 2 , 829 t/mi 2 , and 715 t/mi 2 , respectively, from these basins can be attributed to seasonal chloride yields associated with use of road deicing salts. The Niagara Escarpment can produce large amounts of dissolved solids from the dissolution of minerals (a continual process reflected in base flow samples). Groundwater inflows in the Salmon River have very low concentrations of dissolved solids due to minimal bedrock interaction along the Tug Hill Plateau and discharge from the Tug Hill sand and gravel aquifer, which has minimal mineralization.

New York↗