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At least 955 records · Page 53Linked to original sources
USGS1992

Effects of acidic deposition on the erosion of carbonate stone - experimental results from the U.S. National Acid Precipitation Assessment Program (NAPAP)

One of the goals of NAPAP-sponsored research on the effects of acidic deposition on carbonate stone has been to quantify the incremental effects of wet and dry deposition of hydrogen ion, sulfur dioxide and nitrogen oxides on stone erosion. Test briquettes and slabs of freshly quarried Indiana limestone and Vermont marble have been exposed to ambient environmental conditions in a long-term exposure program. Physical measurements of the recession of test stones exposed to ambient conditions at an angle of 30?? to horizontal at the five NAPAP materials exposure sites range from ~15 to ~30?? ??m yr-1 for marble, and from ~25 to ~45 ??m yr -1 for limestone, and are approximately double the recession estimates based on the observed calcium content of run-off solutions from test slabs. The difference between the physical and chemical recession measurements is attributed to the loss of mineral grains from the stone surfaces that are not measured in the run-off experiments. The erosion due to grain loss does not appear to be influenced by rainfall acidity, however, preliminary evidence suggests that grain loss may be influenced by dry deposition of sulfur dioxide between rainfall events. Chemical analyses of the run-off solutions and associated rainfall blanks suggest that ~30% of erosion by dissolution can be attributed to the wet deposition of hydrogen ion and the dry deposition of sulfur dioxide and nitric acid between rain events. The remaining ~70% of erosion by dissolution is accounted for by the solubility of carbonate stone in rain that is in equilibrium with atmospheric carbon dioxide ('clean rain'). These results are for marble and limestone slabs exposed at an angle of 30?? from horizontal. The relative contribution of sulfur dioxide to chemical erosion is significantly enhanced for stone slabs having an inclination of 60?? or 85??. The dry deposition of alkaline particulate material has a mitigating effect at the two urban field exposure sites at Washington, DC, and Steubenville, OH.

Conference Paper↗
USGS2018

Food‐web structure and ecosystem function in the Laurentian Great Lakes—Toward a conceptual model

The relationship between food‐web structure (i.e., trophic connections, including diet, trophic position, and habitat use, and the strength of these connections) and ecosystem functions (i.e., biological, geochemical, and physical processes in an ecosystem, including decomposition, production, nutrient cycling, and nutrient and energy flows among community members) determines how an ecosystem responds to perturbations, and thus is key to understanding the adaptive capacity of a system (i.e., ability to respond to perturbation without loss of essential functions). Given nearly ubiquitous changing environmental conditions and anthropogenic impacts on global lake ecosystems, understanding the adaptive capacity of food webs supporting important resources, such as commercial, recreational, and subsistence fisheries, is vital to ecological and economic stability. Herein, we describe a conceptual framework that can be used to explore food‐web structure and associated ecosystem functions in large lakes. We define three previously recognised broad habitat compartments that constitute large lake food webs (nearshore, pelagic, and profundal). We then consider, at three levels, how energy and nutrients flow: (a) into each basal resource compartment; (b) within each compartment; and (c) among multiple compartments (coupling). Flexible shifts in food‐web structures (e.g., via consumers altering their diet or habitat) that sustain these flows in the face of perturbations provide evidence for adaptive capacity. We demonstrate the conceptual framework through a synthesis of food‐web structure and ecosystem function in the Laurentian Great Lakes, with emphasis on the upper trophic levels (i.e., fishes). Our synthesis showed evidence of notable adaptive capacity. For example, fishes increased benthic coupling in response to invasion by mussels and round gobies. However, we also found evidence of loss of adaptive capacity through species extirpations (e.g., widespread collapse in the abundance and diversity of ciscoes, Coregonus spp., except in Lake Superior). In large freshwater lakes, fishery managers have traditionally taken a top‐down approach, focusing on stocking and harvest policy. By contrast, water quality managers have focused on nutrient effects on chemical composition and lower trophic levels of the ecosystem. The synthesised conceptual model provides resource managers a tool to more systematically interpret how lower food‐web dynamics influence harvestable fish populations, and vice versa, and to act accordingly such that sustainable resource practices can be achieved. We identify key gaps in knowledge that impede a fuller understanding of the adaptive capacities of large lakes. In general, we found a greater uncertainty in our understanding of processes influencing energy and nutrient flow within and among habitats than flows into the system.

Great Lakes↗
USGS1985

Abundance fluctuations among benthic invertebrates in two pacific estuaries

Long-term studies were used to examine (1) contrasting time scales and mechanisms of structural variations within two benthic communities and (2) the usefulness of long data sets for evaluating human impact. A 10-year study of a San Francisco Bay mudflat, the details of which are reported elsewhere, has revealed large short-term (on the order of months) variations in species abundances within a community composed predominantly of opportunistic species. The study site, located in a highly urbanized estuary, is subject to the influence of a nearby sewage-treatment facility. However, rapid changes in population size of the common species, in part due to periodic natural habitat disturbance, impedes the detection of anthropogenic influences on community composition. Only a very long-term data set may provide evidence of progressive change. Data collected for a 20-year period on the benthic community at 200 m depth in the main basin of Puget Sound, an environment subject to little apparent habitat disturbance show that numerical abundance of the common species can also change markedly. Here, however, numerical dominance shifts from one species to another at irregular, multiyear intervals. Recent increases in two heretofore rare species, and a significant increase in total numbers of individuals suggest that long-term changes may be occurring in this community. These two long-term data sets demonstrate the importance of measuring both the amplitude and the periodicity of fluctuations in population size of aquatic species as well as long-term fluctuations and patterns in environmental factors before attempting to demonstrate the effect of anthropogenic influences on aquatic communities. The results of these studies also demonstrate the usefulness of long-term data sets for revealing the potential importance of interactions among species in determining abundance patterns in the soft-bottom benthos.

Estuaries↗
USGS2024

Autonomous samplers and environmental DNA metabarcoding: Sampling day and primer choice have greatest impact on fish detection probabilities

Unprecedented rates of biodiversity loss and ecosystem function necessitate the use of rapid, efficacious, and cost-effective biomonitoring tools. The combination of autonomous samplers and high throughput sequencing (i.e., “metabarcoding”) of environmental DNA ( eDNA ) samples enables characterization of entire communities at high frequency and can be an important tool for conservation and management, allowing researchers to track fluctuations in biodiversity. We deployed two autonomous samplers at two U.S. Geological Survey streamgage sites in the upper Snake River (Wyoming and Idaho, USA) to collect eDNA samples from July-September 2021 and 2022 to characterize fish diversity. We used a probabilistic approach to evaluate the effects of water temperature, water discharge, filter pore size, water volume filtered, number of samples collected, timing, and primers on the probability of detecting eDNA from fish species known to be present. We detected eDNA from 13/15 species present in these areas of the Snake River. Overall, we did not find evidence that filter pore size, water volume filtered, water discharge, and water temperature affected the probability of detecting fish species’ eDNA . By contrast, primers and sampling day affected fish detection probabilities, indicating that primer choice and sampling day can either over- or under- estimate species diversity. These results indicate that users would ideally consider sampling on non-consecutive days and which primer set will maximize species detections.

Metabarcoding & Metagenomics↗
USGS2016

The genetic basis of anoxygenic photosynthetic arsenite oxidation

“Photoarsenotrophy”, the use of arsenite as an electron donor for anoxygenic photosynthesis, is thought to be an ancient form of phototrophy along with the photosynthetic oxidation of Fe(II), H 2 S, H 2 , and NO 2 - . Photoarsenotrophy was recently identified from Paoha Island's (Mono Lake, CA) arsenic-rich hot springs. The genomes of several photoarsenotrophs revealed a gene cluster, arxB2AB1CD, where arxA is predicted to encode for the sole arsenite oxidase. The role of arxA in photosynthetic arsenite oxidation was confirmed by disrupting the gene in a representative photoarsenotrophic bacterium, resulting in the loss of light-dependent arsenite oxidation. In situ evidence of active photoarsenotrophic microbes was supported by arxA mRNA detection for the first time, in red-pigmented microbial mats within the hot springs of Paoha Island. This work expands on the genetics for photosynthesis coupled to new electron donors and elaborates on known mechanisms for arsenic metabolism, thereby highlighting the complexities of arsenic biogeochemical cycling.

Environmental Microbiology↗
USGS2025

Land use and soil characteristics are associated with increased risk of treponeme-associated hoof disease in elk

Environments can shape the occurrence and extent of disease outbreaks in wildlife. We studied the effects of environmental features on the occurrence of treponeme-associated hoof disease (TAHD), an emerging infectious disease of free-ranging elk ( Cervus canadensis ), in southwestern Washington, USA. During the 2016–2022 harvest seasons, successful elk hunters returned mandatory harvest reports and noted the presence or absence of hoof abnormalities indicative of TAHD. We used generalized linear models and an information-theoretic approach to model selection to relate (1) the spatial distribution of hoof abnormalities to features of landscapes (land cover, topography, and soil characteristics) and (2) the temporal distribution of hoof abnormalities to precipitation during the year preceding the harvest season. The probability of hoof disease increased with soil clay content and proportion of agricultural land (88% of model weight). We found no conclusive evidence for an effect of precipitation on the occurrence of TAHD, but this could relate to relatively high annual precipitation (>140 cm) in the study area. Nevertheless, disease cases may have been negatively associated with precipitation during February–June (55% of model weight). Soils and land management practices may increase the risk of hoof disease by promoting the survival of pathogens that cause TAHD, the susceptibility of elk to infection, or the intensity of pathogen transmission among elk when congregated. Focusing on areas where the risk of disease is greatest may facilitate the detection of TAHD during surveillance. Likewise, removing infected elk and dispersing uninfected elk from areas with the greatest risk of disease may enhance the effectiveness of efforts to reduce transmission. Basing this work on the knowledge that disease risk is modified by factors of hosts, pathogens, and environments, this study serves as an application of the epidemiological triad framework to better understand the ecology and epidemiology of an emerging infectious disease in wildlife.

Washington↗
USGS2020

Anthropogenic pollutants and biomarkers for the identification of 2011 Tohoku-oki tsunami deposits (Japan)

Organic geochemistry is commonly used in environmental studies. In tsunami research, however, its applications are in their infancy and it is still rarely used. We present results for two types of organic geochemical markers, biomarkers and anthropogenic markers, present in deposits left by 2011 Tohoku-oki tsunami on the Sendai Plain, Japan. As the tsunami inundated the coastal lowland up to 4.85 km inland, sediments from various sources were eroded, transported and deposited. This led to the distribution of biomarkers from different sources across the Sendai Plain creating a unique geochemical signature in the tsunami deposits. The tsunami also caused destruction along the Sendai coastline, leading to the release of large quantities of environmental pollutants (e.g., fossil fuels, tarmac, pesticides, plastics, etc.) that were distributed across the inundated area. These anthropogenic markers, represented by three main compound groups (polycyclic aromatic hydrocarbons, pesticides, and halogenated compounds), were preserved in tsunami deposits (at least until 2013, prior to land clearing). Their concentrations differed significantly from the pre- and post-tsunami background contamination levels. Organic proxy concentrations can differ for sand and mud deposits due to various factors (e.g., preservation, dilution, microbial alteration). However, it can be concluded that anthropogenic markers and biomarkers have the potential to be a valuable proxy for future studies of recent tsunami deposits because of their high source specificity and relatively good preservation potential providing information about sediment sources and transport pathways (e.g., marine source, evidence of backwash).

Sendai↗
USGS2007

'Snake River (SR)-type' volcanism at the Yellowstone hotspot track: Distinctive products from unusual, high-temperature silicic super-eruptions

A new category of large-scale volcanism, here termed Snake River (SR)-type volcanism, is defined with reference to a distinctive volcanic facies association displayed by Miocene rocks in the central Snake River Plain area of southern Idaho and northern Nevada, USA. The facies association contrasts with those typical of silicic volcanism elsewhere and records unusual, voluminous and particularly environmentally devastating styles of eruption that remain poorly understood. It includes: (1) large-volume, lithic-poor rhyolitic ignimbrites with scarce pumice lapilli; (2) extensive, parallel-laminated, medium to coarse-grained ashfall deposits with large cuspate shards, crystals and a paucity of pumice lapilli; many are fused to black vitrophyre; (3) unusually extensive, large-volume rhyolite lavas; (4) unusually intense welding, rheomorphism, and widespread development of lava-like facies in the ignimbrites; (5) extensive, fines-rich ash deposits with abundant ash aggregates (pellets and accretionary lapilli); (6) the ashfall layers and ignimbrites contain abundant clasts of dense obsidian and vitrophyre; (7) a bimodal association between the rhyolitic rocks and numerous, coalescing low-profile basalt lava shields; and (8) widespread evidence of emplacement in lacustrine-alluvial environments, as revealed by intercalated lake sediments, ignimbrite peperites, rhyolitic and basaltic hyaloclastites, basalt pillow-lava deltas, rhyolitic and basaltic phreatomagmatic tuffs, alluvial sands and palaeosols. Many rhyolitic eruptions were high mass-flux, large volume and explosive (VEI 6-8), and involved H2O-poor, low-??18O, metaluminous rhyolite magmas with unusually low viscosities, partly due to high magmatic temperatures (900-1,050??C). SR-type volcanism contrasts with silicic volcanism at many other volcanic fields, where the fall deposits are typically Plinian with pumice lapilli, the ignimbrites are low to medium grade (non-welded to eutaxitic) with abundant pumice lapilli or fiamme, and the rhyolite extrusions are small volume silicic domes and coule??es. SR-type volcanism seems to have occurred at numerous times in Earth history, because elements of the facies association occur within some other volcanic fields, including Trans-Pecos Texas, Etendeka-Paran, Lebombo, the English Lake District, the Proterozoic Keewanawan volcanics of Minnesota and the Yardea Dacite of Australia. ?? Springer-Verlag 2007.

Bulletin of Volcanology↗
USGS2020

The future of landslides’ past—A framework for assessing consecutive landsliding systems

Landslides often happen where they have already occurred in the past. The potential of landslides to reduce or enhance conditions for further landsliding has long been recognized and has often been reported, but the mechanisms and spatial and temporal scales of these processes have previously received little specific attention. Despite a preponderance of qualitative and anecdotal evidence, there has been limited analysis. As a result, there is little consensus on the meaning of terms such as landslide repetition, recurrence, and reactivation. This source of confusion is evident when such terms are also used to describe systems where landsliding is prevalent but unrelated to landslide history. Recent findings, partly based on a rare multi-temporal landslide inventory for an area in Italy, show that the impacts of earlier landslides affect a substantial fraction of landslides, that landslides following earlier landslides differ from those that do not, and that accounting for the effect of previous landslides can improve susceptibility assessments. These findings await confirmation in other landslide prone landscapes but show that consecutive landsliding deserves more attention, which requires consistent terminology. No such terminology is presently available, and we therefore propose it in this manuscript. We use the term 'uncorrelated landsliding' to describe situations where landslides are common, but where a correlation with environmental variables such as terrain steepness is not implied. We propose 'correlated landsliding' to describe situations where landslides are common and correlations with environmental variables exist, and 'path-dependent landsliding' to describe situations where causal relations exist between consecutive landslides, for instance when landslides occur at the scarp of previous landslides. These are situations where past landslides impact future landslides. Within the path-dependent category, we distinguish three subcategories based on the spatial distance between earlier and later landslides: 'reactivation' or 'continuation' if essentially the same material recommences or continues to slide, 'local activation' if an earlier slide causes changes in a local hillslope that cause a later slide, and 'remote activation' if an earlier slide causes changes elsewhere in the landscape that cause a later landslide. We use this proposed set of terms to outline some prominent knowledge gaps and potential research questions.

Landslides↗
USGS2019

A ship's ballasting history as an indicator of foraminiferal invasion potential--An example from Prince William Sound, Alaska, USA

We investigated the potential role of ballast sediment from coastal and transoceanic oil tankers arriving and de-ballasting in Port Valdez as a vector for the introduction of invasive benthic foraminifera in Prince William Sound, Alaska. Forty-one ballast sediment samples were obtained in 1998-1999 from 11 oil tankers that routinely discharged their ballast in Prince William Sound after sailing from other West Coast (Los Angeles/Long Beach Harbor, San Francisco Bay, and Puget Sound) or foreign ports (Japan, Korea, and China) where they originally ballasted. Forty of these samples contained benthic foraminifera, including 27 (66%) with the introduced species Trochammina hadai Uchio from nine (81%) of the ships. In all, 59 species were recovered and foraminiferal abundance peaked at 27,000 specimens per gram dry sediment. Of the 41 samples, three were stained and living benthic foraminifera were recovered in all three of them. The entrained foraminifera reflected the number of times ballasting occurred (single or multiple sources), the location of ballasting (estuarine or offshore), and post-acquisition alteration of the sediment (i.e., growth of gypsum crystals at the possible expense of calcareous tests). In temperate regions, sediment samples resulting from single-source ballasting in estuaries (SSBE), multiple-source ballasting in estuaries (MSBE), single-source ballasting offshore (SSBO), and a combination of SSBO and SSBE or MSBE, typically contained increasingly higher species richness, respectively. The potential for an invasion is dependent on the presence of viable candidates and their survivability, their abundance in the ballasting location, and the number of times ballasting occurs, most of which are evident from the ship’s ballasting history. Trochammina hadai is a good example of a successful invasive in Prince William Sound for the following reasons: 1) the species is abundant enough in West Coast and foreign ports where ballasting occurs that sufficient individuals needed for reproduction may be transported to the receiving waters; 2) Port Valdez, in particular, receives repeated and frequent inoculations from the same source ports where T. hadai is present; 3) large quantities of sediment are taken up by commercial vessels during ballasting and benthic foraminifera occur in abundance in ballast sediment; 4) ballast sediment provides a suitable environment in which benthic foraminifera can survive for extended periods of time during transport; 5) T. hadai flourishes in a wide range of temperatures and environmental conditions that characterize both the ports where ballasting takes place as well as in Port Valdez where de-ballasting occurs; and 6) the species is capable of asexual reproduction and possibly the ability to form a dormant resting stage, both of which have the potential to lower the threshold for colonization. Clearly, ballast sediment is a viable vector for the introduction of T. hadai and other invasives into Alaskan ports and elsewhere worldwide.

Alaska↗
USGS1986

Wildlife in some areas of New Mexico and Texas accumulate elevated DDE residues, 1983

Over the last decade, data gathered by the U.S. Fish & Wildlife Service's National Contaminant Biomonitoring Program have identified an area of elevated DDE contamination in portions of New Mexico and Texas. Extensive wildlife sampling in 1983 confirmed that DDE, the major metabolite of the insecticide DDT, was present at high concentrations in wildlife at selected sites in the Rio Grande and Pecos River drainages. DDE in carcasses ranged up to 47 ppm (wet weight) in western kingbirds ( Tyrannus verticalis ), 35 ppm in house sparrows ( Passer domesticus ), 46 ppm in Brazilian free-tailed bats ( Tadarida brasiliensis ), and 104 ppm in whiptail lizards ( Cnemidophorus spp.). DDE was also detected in gut contents from western kingbirds at some of the highest concentrations ever reported, ranging up to 21 ppm in proventricular samples. An average of 40% of the eggs of black-crowned night-herons ( Nycticorax nycticorax ) from two sites along the Pecos River in New Mexico had DDE levels (≥8 ppm) that have been associated in other studies with impaired reproduction. In contrast, wintering mallards ( Anas platyrhynchos ) and American coots ( Fulica americana ) from the study area did not accumulate elevated DDE levels. DDE in wildlife samples at control sites (nonagricultural areas) was either absent or averaged less than 0.35 ppm. Collectively, these data provide evidence that there is major DDE contamination of several vertebrate species in portions of the Rio Grande and Pecos River drainages, but whether the contamination is recent or residual was not determined. Apparently, the source was not DDE contamination present in dicofol (4-chloro- a -(4-chlorophenyl)- a -(trichloromethyl) benzenemethanol); neither dicofol nor its metabolite, p,p' -dichlorobenzophenone, were detected in wildlife carcasses (0.1 ppm detection limit) or proventricular contents (0.01 ppm detection limit) of western kingbirds.

New Mexico, Texas↗
USGS1988

Denitrification in a sand and gravel aquifer

Denitrification was assayed by the acetylene blockage technique in slurried core material obtained from a freshwater sand and gravel aquifer. The aquifer, which has been contaminated with treated sewage for more than 50 years, had a contaminant plume greater than 3.5-km long. Near the contaminant source, groundwater nitrate concentrations were greater than 1 mM, whereas 0.25 km downgradient the central portion of the contaminant plume was anoxic and contained no detectable nitrate. Samples were obtained along the longitudinal axis of the plume (0 to 0.25 km) at several depths from four sites. Denitrification was evident at in situ nitrate concentrations at all sites tested; rates ranged from 2.3 to 260 pmol of N 2 O produced (g of wet sediment) −1 h −1 . Rates were highest nearest the contaminant source and decreased with increasing distance downgradient. Denitrification was the predominant nitrate-reducing activity; no evidence was found for nitrate reduction to ammonium at any site. Denitrifying activity was carbon limited and not nitrate limited, except when the ambient nitrate level was less than the detection limit, in which case, even when amended with high concentrations of glucose and nitrate, the capacity to denitrify on a short-term basis was lacking. These results demonstrate that denitrification can occur in groundwater systems and, thereby, serve as a mechanism for nitrate removal from groundwater.

Massachusetts↗
USGS2012

Experimental deformation of topaz crystals: Possible embrittlement by intracrystalline water

Crystallographically oriented single‐crystal prisms of gem quality topaz (composition AlSiO (OH− F) where x = 0.04 ± 0.01) were deformed at a confining pressure of 1.50 GPa, a temperature of 800°C, and a strain rate of 2×10 s. Under nearly identical conditions, all crystals of anhydrous rock‐forming minerals that have been tested to date, such as olivine, quartz, feldspars, pyroxenes, and refractory oxides, deform plastically; in contrast, our topaz crystals failed by brittle fracture regardless of the orientation of the compression direction. No optical evidence for plastic deformation was detected. Another suite of experiments with compression perpendicular to the (001) cleavage at = 100°–950°C and a strain rate of 2×10 s displayed two regimes of behavior: (1) at >400°C, fracture strength was independent of temperature, and fracture occurred on one or two surfaces parallel to {103}; (2) at <400°C, the fracture strength increased rapidly with decreasing temperature, no macroscopic stress drop was observed, and many closely spaced conjugate fractures formed on (103) and (103). The anomalous brittleness of topaz compared to anhydrous silicate and oxide crystals indicates that intracrystalline “water” plays a role in the embrittlement. We suggest that water within the topaz crystals promotes fracture in ways similar to the mechanisms of slow crack growth aided by environmental moisture.

Journal of Geophysical Research B: Solid Earth↗
USGS1979

Diet-related die-off of captive black-crowned night herons

Several species of herons, which are top-level consumers in aquatic food chains, have experienced population declines in certain areas o f their normal range (7,13) -- areas in which elevated levels of various environmental pollutants are known to occur. (6) To determine the effects of environmental contaminants on the Ardeidae, a colony of black-crowned night herons (Nycticorax nycticorax) was established in 1972 at the Patuxent Wildlife Research Center. The night heron was selected as the model species because of its widespread occurrence and its ability to survive and reproduce in captivity. Birds for the colony were obtained from either the New York Zoological Park and Dallas Zoo or were wild-caught along the Maryland and Virginia coasts in 1972, 1973, and 1975. This report describes a die-off in the colony following a change in the origina of their food source. The data suggest that the mortality was diet-related, most likely caused by vitamin E deficiency. Excessive dietary thiaminase may have resulted in concurrent thiamine deficiency, but evidence for this is equivocal.

American Association of Zoo Veterinarians, Annual ↗
USGS2004

Bioenergetics-based modeling of individual PCB congeners in nestling tree swallows from two contaminated sites on the Upper Hudson River, New York

A bioenergetics-based model was used to simulate the accumulation of total PCBs and 20 PCB congeners by nestling tree swallows at two contaminated sites on the Upper Hudson River, New York. PCB concentrations in birds were calculated as the sum of inherited residues and those acquired through consumption of contaminated insects. Close agreement between simulations and measured residues in 5-, 10-, and 15-day-old nestlings was obtained when PCB concentrations in the diet were set equal to those in food boli taken from adult birds. These simulations were further optimized by fitting the value of a dietary assimilation efficiency constant. Fitted constants for both sites were similar and averaged about 0.7. An evaluation of model performance for individual congeners provided no evidence of metabolic biotransformation. The results of this study are consistent with a companion effort in which principal components analysis was used to compare PCB congener patterns in insects and in tree swallow eggs, nestlings, and adults. Together, these studies establish a quantitative linkage between nestling tree swallows and the insects that they consume and provide strong support for the use of nestling swallows as a biomonitoring species for exposure assessment.

Environmental Science & Technology↗
USGS2021

The demographic and ecological factors shaping diversification among rare Astragalus species

Aim Evolutionary radiations are central to the origin and maintenance of biodiversity, yet we rarely understand how they are jointly shaped by demography and ecological opportunity. Astragalus is the largest plant genus in the world and is disproportionately comprised of rare species restricted to narrow geographic and ecological regions. Here, we explored the demographic and ecological mechanisms underlying patterns of diversification in a threatened Astragalus species complex endemic to a small desert region in the western United States. Location Southeast Utah, USA. Methods We used high‐throughput DNA sequencing to infer genetic structure, genetic diversity, and demographic history (i.e., the timing of population divergence, effective population sizes and gene flow) among Astragalus taxa. We performed landscape genetic analyses to quantify the relationships between genetic differentiation, geographic distance, and ecological distance based on bioclimatic and soil variables. Finally, we identified putative adaptive loci that show higher genetic differentiation between taxa than expected based on our inferred neutral demographic model. Results We found evidence of low gene flow between three highly differentiated taxa (currently delineated as A . iselyi , A . sabulosus var. sabulosus and A. sabulosus var. vehiculus ) that rapidly diverged from a small ancestral population near the beginning of the last glacial period. Genomic signatures revealed long‐term effective population sizes are 2–10× larger than recent census sizes, perhaps due to the maintenance of standing genetic variation through seed banks. Consistent with limited dispersal and local adaptation, genome‐wide patterns of differentiation are shaped by geographic distance (isolation‐by‐distance) and climate and soil variation (isolation‐by‐environment). Taxon‐specific adaptation is further supported by uncovering putative adaptive loci. Main Conclusions Our findings suggest that interactions between demography (i.e., dispersal limitations and seeds banks) and ecological opportunity (i.e., spatial and temporal environmental heterogeneity) may promote diversification, endemism, and rarity among closely related Astragalus species and similar plant clades distributed across complex landscapes.

Utah↗
USGS1996

Evidence for the correlation of the upper part of the Llewellyn Formation (Pennsylvania Anthracite region), with the Monongahela Formation

A plant fossil assemblage from the roof shale of the No. 25 anthracite bed in Pennsylvania indicates that the upper part of the Llewellyn Formation is much younger than the lower part of the Allegheny Group or Conemaugh Group correlation that was indicated by Read and Mamay (1960). These results confirm the conclusions of Fontaine and White (1880), White (1900), and Darrah (1969) who suggested that the highest coals of the Llewellyn Formation could be equivalent to the Monongahela Group.

Northeastern Geology and Environmental Sciences↗
USGS2013

The δ2H and δ18O of tap water from 349 sites in the United States and selected territories

Because the stable isotopic compositions of hydrogen (δ 2 H) and oxygen (δ 18 O) of animal (including human) tissues, such as hair, nail, and urine, reflect the δ 2 H and δ 18 O of water and food ingested by an animal or a human and because the δ 2 H and δ 18 O of environmental waters vary geographically, δ 2 H and δ 18 O values of tap water samples collected in 2007-2008 from 349 sites in the United States and three selected U.S. territories have been measured in support of forensic science applications, creating one of the largest databases of tap water δ 2 H and δ 18 O values to date. The results of replicate isotopic measurements for these tap water samples confirm that the expanded uncertainties (U = 2μ c ) obtained over a period of years by the Reston Stable Isotope Laboratory from δ 2 H and δ 18 O dual-inlet mass spectrometric measurements are conservative, at ±2‰ and ±0.2 ‰, respectively. These uncertainties are important because U.S. Geological Survey data may be needed for forensic science applications, including providing evidence in court cases. Half way through the investigation, an isotope-laser spectrometer was acquired, enabling comparison of dual-inlet isotope-ratio mass spectrometric results with isotope-laser spectrometric results. The uncertainty of the laser-based δ 2 H measurement results for these tap water samples is comparable to the uncertainty of the mass spectrometric method, with the laser-based method having a slightly lower uncertainty. However, the δ 18 O uncertainty of the laser-based method is more than a factor of ten higher than that of the dual-inlet isotoperatio mass spectrometric method.

Guam, Puerto Rico, St. John, U.S. Virgin Islands↗