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USGS2023

Genetic architecture and evolution of color variation in American black bears

Color variation is a frequent evolutionary substrate for camouflage in small mammals, but the underlying genetics and evolutionary forces that drive color variation in natural populations of large mammals are mostly unexplained. The American black bear, Ursus americanus ( U. americanus ), exhibits a range of colors including the cinnamon morph, which has a similar color to the brown bear, U. arctos , and is found at high frequency in the American southwest. Reflectance and chemical melanin measurements showed little distinction between U. arctos and cinnamon U. americanus individuals. We used a genome-wide association for hair color as a quantitative trait in 151 U. americanus individuals and identified a single major locus (p < 10 −13 ). Additional genomic and functional studies identified a missense alteration (R153C) in Tyrosinase-related protein 1 ( TYRP1 ) that likely affects binding of the zinc cofactor, impairs protein localization, and results in decreased pigment production. Population genetic analyses and demographic modeling indicated that the R153C variant arose 9.36 kya in a southwestern population where it likely provided a selective advantage, spreading both northwards and eastwards by gene flow. A different TYRP1 allele, R114C, contributes to the characteristic brown color of U. arctos but is not fixed across the range.

Current Biology↗

USGS2017

Electrical guidance efficiency of downstream-migrating juvenile Sea Lamprey decreases with increasing water velocity

We tested the efficacy of a vertically oriented field of pulsed direct current (VEPDC) created by an array of vertical electrodes for guiding downstream-moving juvenile Sea Lampreys Petromyzon marinus to a bypass channel in an artificial flume at water velocities of 10–50 cm/s. Sea Lampreys were more likely to be captured in the bypass channel than in other sections of the flume regardless of electric field status (on or off) or water velocity. Additionally, Sea Lampreys were more likely to be captured in the bypass channel when the VEPDC was active; however, an interaction between the effects of VEPDC and water velocity was observed, as the likelihood of capture decreased with increases in water velocity. The distribution of Sea Lampreys shifted from right to left across the width of the flume toward the bypass channel when the VEPDC was active at water velocities less than 25 cm/s. The VEPDC appeared to have no effect on Sea Lamprey distribution in the flume at water velocities greater than 25 cm/s. We also conducted separate tests to determine the threshold at which Sea Lampreys would become paralyzed. Individuals were paralyzed at a mean power density of 37.0 µW/cm 3 . Future research should investigate the ability of juvenile Sea Lampreys to detect electric fields and their specific behavioral responses to electric field characteristics so as to optimize the use of this technology as a nonphysical guidance tool across variable water velocities.

Transactions of the American Fisheries Society↗

USGS2015

Survival, growth, and tag retention in age-0 Chinook Salmon implanted with 8-, 9-, and 12-mm PIT tags

The ability to represent a population of migratory juvenile fish with PIT tags becomes difficult when the minimum tagging size is larger than the average size at which fish begin to move downstream. Tags that are smaller (e.g., 8 and 9 mm) than the commonly used 12-mm PIT tags are currently available, but their effects on survival, growth, and tag retention in small salmonid juveniles have received little study. We evaluated growth, survival, and tag retention in age-0 Chinook Salmon Oncorhynchus tshawytscha of three size-groups: 40–49-mm fish were implanted with 8- and 9-mm tags, and 50– 59-mm and 60–69-mm fish were implanted with 8-, 9-, and 12-mm tags. Survival 28 d after tagging ranged from 97.8% to 100% across all trials, providing no strong evidence for a fish-size-related tagging effect or a tag size effect. No biologically significant effects of tagging on growth in FL (mm/d) or weight (g/d) were observed. Although FL growth in tagged fish was significantly reduced for the 40–49-mm and 50–59-mm groups over the first 7 d, growth rates were not different thereafter, and all fish were similar in size by the end of the trials (day 28). Tag retention across all tests ranged from 93% to 99%. We acknowledge that actual implantation of 8- or 9-mm tags into small fish in the field will pose additional challenges (e.g., capture and handling stress) beyond those observed in our laboratory. However, we conclude that experimental use of the smaller tags for small fish in the field is supported by our findings.

North American Journal of Fisheries Management↗

USGS2020

The NASA hydrological forecast system for food and water security applications

Many regions in Africa and the Middle East are vulnerable to drought and to water and food insecurity, motivating agency efforts such as the U.S. Agency for International Development’s (USAID) Famine Early Warning System Network (FEWS NET) to provide early warning of drought events in the region. Each year these warnings guide life-saving assistance that reaches millions of people. A new NASA multi-model, remote sensing-based hydrological forecasting and analysis system, NHyFAS, has been developed to support such efforts by improving the FEWS NET’s current early warning capabilities. NHyFAS derives its skill from two sources: (i) accurate initial conditions, as produced by an offline land modeling system through the application and/or assimilation of various satellite data (precipitation, soil moisture, and terrestrial water storage); and (ii) meteorological forcing data during the forecast period as produced by a state-of-the-art ocean-land-atmosphere forecast system. The land modeling framework used is the Land Information System (LIS), which employs a suite of land surface models, allowing multi-model ensembles and multiple data assimilation strategies to better estimate land surface conditions. An evaluation of NHyFAS shows that its one-to-five month forecasts successfully capture known historic drought events. The system also benefits from strong collaboration with end-user partners in Africa and the Middle East, who provide insights on strategies to formulate and communicate early warning indicators to water and food security communities. The additional lead time provided by this system will increase the speed, accuracy and efficacy of humanitarian disaster relief, helping to save lives and livelihoods.

Bulletin of the American Meteorological Society↗

USGS2014

Historic and contemporary mercury exposure and potential risk to yellow-billed loons ( Gavia adamsii ) breeding in Alaska and Canada

The Yellow-billed Loon (Gavia adamsii) is one of the rarest breeding birds in North America. Because of the small population size and patchy distribution, any stressor to its population is of concern. To determine risks posed by environmental mercury (Hg) loads, we captured 115 Yellow-billed Loons between 2002 and 2012 in the North American Arctic and sampled their blood and/or feather tissues and collected nine eggs. Museum samples from Yellow-billed Loons also were analyzed to examine potential changes in Hg exposure over time. An extensive database of published Hg concentrations and associated adverse effects in Common Loons (G. immer) is highly informative and representative for Yellow-billed Loons. Blood Hg concentrations reflect dietary uptake of methylmercury (MeHg) from breeding areas and are generally considered near background levels if less than 1.0 µg/g wet weight (ww). Feather (grown at wintering sites) and egg Hg concentrations can represent a mix of breeding and wintering dietary uptake of MeHg. Based on Common Loon studies, significant risk of reduced reproductive success generally occurs when adult Hg concentrations exceed 2.0 µg/g ww in blood, 20.0 µg/g fresh weight (fw) in flight feathers and 1.0 µg/g ww in eggs. Contemporary mercury concentrations for 176 total samples (across all study sites for 115 Yellow-billed Loons) ranged from 0.08 to 1.45 µg/g ww in blood, 3.0 to 24.9 µg/g fw in feathers and 0.21 to 1.23 µg/g ww in eggs. Mercury concentrations in blood, feather and egg tissues indicate that some individual Yellow-billed Loons in breeding populations across North America are at risk of lowered productivity resulting from Hg exposure. Most Yellow-billed Loons breeding in Alaska overwinter in marine waters of eastern Asia. Although blood Hg concentrations from most breeding loons in Alaska are within background levels, some individuals exhibit elevated feather and egg Hg concentrations, which likely indicate the uptake of MeHg originating from eastern Asia. Feather Hg concentrations tended to be highest in individuals overwintering farthest west (closer to Asia). A retrospective analysis of museum specimens (n = 25) found a two-fold increase in Yellow-billed Loon feather Hg concentrations from the pre-1920s (as early as 1845) to the present. The projected increase in Hg deposition (approximately four-fold by 2050) along with the uncertainty of Hg being released through the thawing of permafrost and Arctic sea ice suggest that Hg body burdens in Yellow-billed Loons may increase. These findings indicate that Hg is a current and potentially increasing environmental stressor for the Yellow-billed Loon and possibly other Nearctic-Palearctic migrant birds.

Alaska↗

USGS2013

Proceedings of a workshop on American Eel passage technologies

Recent concerns regarding a decline in recruitment of American eels ( Anguilla rostrata ) have prompted efforts to restore this species to historic habitats by providing passage for both upstream migrant juveniles and downstream migrant adults at riverine barriers, including low-head and hydroelectric dams (Castonguay et al. 1994, Haro et al. 2000). These efforts include development of management plans and stock assessment reviews in both the US and Canada (COSEWIC 2006, Canadian Eel Working Group 2009, DFO 2010, MacGregor et al. 2010, ASMFC 2000, ASMFC 2006, ASMFC 2008, Williams and Threader 2007), which target improvement of upstream and downstream passage for eels, as well as identification and prioritization of research needs for development of new and more effective passage technologies for American eels. Traditional upstream fish passage structures, such as fishways and fish lifts, are often ineffective passing juvenile eels, and specialized passage structures for this species are needed. Although designs for such passage structures are available and diverse (Knights and White 1998, Porcher 2002, FAO/DVWK 2002, Solomon and Beach 2004a,b, Environment Agency UK 2011), many biologists, managers, and engineers are unfamiliar with eel pass design and operation, or unaware of the technical options available for upstream eel passage, Better coordination is needed to account for eel passage requirements during restoration efforts for other diadromous fish species. Also, appropriately siting eel passes at hydropower projects is critical, and siting can be difficult and complex due to physical restrictions in access to points of natural concentrations of eels, dynamic hydraulics of tailrace areas, and presence of significant competing flows from turbine outfalls or spill. As a result, some constructed eel passes are sited poorly and may pass only a fraction of the number of eels attempting to pass the barrier. When sited and constructed appropriately, however, eel passes can effectively pass thousands of individuals in a season (Appendix D). technologies for preventing impingement and entrainment mortality and injury of downstream migrant eels at hydropower projects are not well developed. Traditional downstream fish passage mitigative techniques originally developed for salmonids and other species are frequently ineffective passing eels (Richkus and Dixon 2003, EPRI 2001, Bruijs and Durif 2009). Large hydropower projects, with high project flows or intake openings that cannot be fitted with racks or screens with openings small enough to exclude eels, pose significant passage problems for this species, and turbine impingement and entrainment mortality of eels can be as high as 100%. Spill mortality and injury may also be significant for eels, given their tendency to move during high flow events when projects typically spill large amounts of flow. Delays in migration of eels that have difficulty locating and utilizing bypass entrances can also be significant. Therefore, downstream passage technologies are at a much more nebulous state of development than upstream passage technologies, and require further evaluation and improvement before rigorous design guidelines can be established. There have been few studies conducted to evaluate effectiveness of current mitigative measures for both upstream and downstream passage of eels. Research is needed to determine eel migratory timing, behavior, and appropriate mitigation technologies for specific sites and eel life history stages. Both upstream and downstream eel passage structures can be difficult to evaluate in terms of performance, and examples of how evaluation and monitoring can be accomplished were reviewed at the workshop.

Report↗

USGS2018

Assessment of carbon dioxide piscicide treatments

Few chemicals are approved to control or eradicate nuisance fish populations in the United States. Carbon dioxide (CO 2 ) is currently being developed and studied as a new piscicide option for nonselective population control. This study evaluated dry ice (solid state CO 2 ) as a simple CO 2 delivery method during winter piscicide applications. Nonnative Silver Carp Hypophthalmichthys molitrix , Bighead Carp H. nobilis , and native Fathead Minnow Pimephales promelas were overwintered together in ice‐covered ponds treated with 25 kg dry ice/100,000 L (low treatment) or 50 kg dry ice/100,000 L (high treatment). Overwinter fish survival was significantly reduced in ponds treated with dry ice relative to untreated control ponds. Fathead Minnows were less susceptible to CO 2 exposure than the carps, with 26–96% survival in low‐treatment ponds and 4–68% survival in high‐treatment ponds. Silver Carp and Bighead Carp were more sensitive to CO 2 treatments and no individuals of either species survived in ponds with the high‐treatment level. Water samples were also collected in all ponds throughout this study, and we observed notably higher Silver Carp and Bighead Carp environmental DNA (eDNA) concentrations in dry‐ice‐treated ponds relative to untreated control ponds. Distinct changes in eDNA trends correlated with fish mortality, and results indicate that eDNA sampling could be a useful indicator of piscicide efficacy. This study demonstrates that CO 2 administered as dry ice is an effective under‐ice piscicide method.

North American Journal of Fisheries Management↗

USGS2011

Effects of flow regulation on shallow-water habitat dynamics and floodplain connectivity

Our study examined the effects of flow regulation on the spatiotemporal availability of shallow habitat patches with slow current velocity (SSCV patches) and floodplain inundation in the unregulated Yellowstone River and the regulated Missouri River in Montana and North Dakota. We mapped representative sites and used hydraulic models and hydrograph data to describe the frequency and extent of floodplain inundation and the availability of SSCV habitat over time during different water years. In the Yellowstone River the distribution, location, and size of SSCV patches varied but followed an annual pattern that was tied to the snowmelt runoff hydrograph. There was less variation in patch distribution in the Missouri River, and the pattern of habitat availability was influenced by flow regulation. Regulated flows and their effects on channel morphology and patterns of vegetation establishment resulted in 3.0–3.5 times less area of inundated woody vegetation during normal and dry years in the Missouri River compared with the Yellowstone River. The differences we observed in SSCV patch dynamics between rivers may have implications for fish populations and community structure through affecting the survival of early life stages. At a larger scale, the smaller area of vegetation inundated in the Missouri River suggests that nutrient cycling and the ecological benefits associated with a moving littoral zone are reduced by the altered flow and sediment regime in that river. Accurate assessments of the effects of flow alteration and successful efforts to restore riverine ecosystems will require consideration of physical and biotic processes that operate at multiple spatial and temporal scales.

Transactions of the American Fisheries Society↗

USGS2019

Nonlethal detection of Asian fish tapeworm in the federally-endangered Humpback Chub using a molecular screening tool

Optimal spawning habitat of federally endangered Humpback Chub Gila cypha exists within the Little Colorado River; however, temperatures in the Little Colorado River are also ideal for proliferation of the invasive pathogenic Asian fish tapeworm Schyzocotyle acheilognathi . The current standard for positive identification of the parasite is necropsy and visual examination of the gut via microscopy, a methodology undesirable for assessing infection in endangered fishes. A swab taken at the rectum of the fish and analyzed using a novel DNA primer targeting the cestode cytochrome oxidase I subunit mtDNA gene region offers a convenient nonlethal sampling tool. To validate the nonlethal methodology, primer sensitivity (51.9%) and specificity (79.5%) were calculated by exposing captive fish to the parasite and comparing results using the lethal standard method (i.e., visual examination). Subsequently, we utilized this nonlethal methodology to address prevalence of infection and infection frequency across a range of size-classes in a wild population of Humpback Chub and addressed possible patterns and mechanisms of infection in the Little Colorado River. When wild Humpback Chub were screened for infection prevalence in spring 2015 (21.4%, n = 140) and fall 2015 (6.6%, n = 258), the relative frequency of infection was highest in juveniles and subadult fish (200–300 mm). Elevated levels of infection near the major spawning grounds of Humpback Chub in the Little Colorado River promote parasitic infection, which may continue to persist without treatment or actions to control infections. We demonstrated that rectal swabs, in conjunction with PCR and primer-specific identification, offer a time-efficient nonlethal method to detect infection of Asian fish tapeworm in an endangered fish.

Transactions of the American Fisheries Society↗

USGS1985

Depositional Relations of Umpqua and Tyee Formations (Eocene), Southwestern Oregon

Studies of the depositional relations of the Umpqua and Tyee Formations (Eocene) in southwestern Oregon indicate a need for reassessing the correlations and currently used terminology. The Umpqua Formation (as herein restricted) consists of as much as 10,000 ft (3,000 m) of mudstone, sandstone, and conglomerate of nonmarine to deep marine origin. A basaltic basement that underlies the sedimentary rocks in most of the area and was formerly included in the Umpqua is herein considered a separate unit and assigned to the Siletz River Volcanics. A proposal to subdivide the Umpqua into three unconformity-bounded formations (in ascending order: Roseburg, Lookingglass, and Flournoy Formations) in the area west of Roseburg, Oregon, is not recognized in this report because of quest onable correlations and limited extent of some units. Foremost of these questionable correlations is that of the Flournoy Formation with rocks formerly assigned to the Tyee Formation in areas as far north as the latitude of Salem, Oregon. My investigations of depositional facies and lithologic criteria do not substantiate this correlation. The Tyee Formation, which conformably overlies the Umpqua, is a predominantly sandstone unit about 6,000 ft (1,800 m) thick, deposited in environments ranging from shallow marine and nonmarine deltaic on the south, to slope and deep marine basinal to the north. Deposition across the Umpqua-Tyee boundary contact represents a change in tectonic setting from active plate margin of the Umpqua to more stable marginal basin deposition of the Tyee. This change is also reflected in a change in provenance as indicated by the characteristic arkosic and micaceous aspects of Tyee sandstones.

Oregon↗

USGS1947

Distribution, abundance, and spawning season and grounds of the kiyi, Leucichthys kiyi Koelz, in Lake Michigan

From May to November, inclusive, the kiyis of southern Lake Michigan (north to and including localities off Kewaunee, Wisconsin, and Frankfort, Michigan) characteristically inhabit depths of more than 50 fathoms, although small numbers commonly are taken in shallower water (as shallow as 20 29 fathoms). There is evidence that the occasional penetration of relatively large numbers of kiyis into depths of less than 50 fathoms in this area is the result of exceptional hydrographic conditions involving the disturbance of considerable masses of water. In northern Lake Michigan the scattered lifts made in the region south of Manistique, Michigan, from June to September indicated kiyis to be abundant at depths from 40 to 69 fathoms (no lifts from shallower or deeper water). In northeastern Lake Michigan (Manitou, Fox, and Beaver Islands and the region between these islands and the east shore) kiyis were lacking in all lifts from 20–39 fathoms and were scarce at greater depths (three to four times as abundant, however, at 50–69 fathoms as at 40–49 fathoms). The consistency with which kiyis remain in water deeper than 40 or 50 fathoms is difficult to explain on the basis of a preference for cold water (about 4°C.). Water of temperatures only a fraction of a degree warmer than that in the region occupied by most kiyis extended up to depths of less than 30 fathoms. Possibly the bathymetric distribution of the kiyi is related to that of its principal food organisms. It was suggested also that the deeper-water habitat may enable the kiyi to avoid strong currents and that an aversion for currents may account for the scarcity of the species in the hydro-graphically complex northeastern area. Other possible factors are chemical conditions of the water or a preference of kiyis for great pressure and darkness. The abundance of kiyis appeared to be more or less uniform throughout the great central basins of Lake Michigan, except as related to depths of water. The scarcity of this species in the island region of northeastern Lake Michigan provided the only certain example of a regional difference in abundance. The survey of 1930–1932 yielded 89 new locality records for the kiyi in Lake Michigan. These localities, together with those reported previously by Koelz (1929), have been charted in Figure 1. Although the gonads of certain apparently aberrant individuals may ripen as early as mid-July and considerable pre-spawning development of the organs may occur in August, there is no evidence of significant spawning activities of kiyis in southern Lake Michigan before the latter part of September. Spawning continues through at least the first week or two in November and possibly longer. The peak of spawning activity seems to occur in the latter half of October and in early November. The depth of water on known spawning grounds (all in southern Lake Michigan) was 57.5 to 84 fathoms. There is evidence that the kiyi may spawn in more than 90 fathoms. Spawning appears to be widespread throughout waters of suitable depth.

Transactions of the American Fisheries Society↗

USGS1999

An evaluation of six internal anchor tags for tagging juvenile striped bass

Six types of internal anchor tags were compared for retention, legibility, and durability in tagging juvenile (age-0) striped bass Morone saxatilis . Tank-reared striped bass (120–200 mm total length) were tagged with coded wire tags and one of six types of internal anchor tags (500 fish each tag type and two groups of controls). The types of internal anchor tags used were as follows: Floy streamer FM-84 (currently in use by the U. S. Fish and Wildlife Service); Floy streamer with protective sheath (modified FM-84), Floy streamer with a monofilament leader and sheath (FM-89SL), modified Hallprint T687, Hallprint monofilament IEX WAD, and Hallprint T-bar IEX NOR. The Hallprint T-bar IEX NOR and the Floy FM-84 tags caused significantly higher 2-week and 6-month mortality. Final fish total length was different among tag types and tagger groups; however, final fish size was not correlated with either variable after adjusting for initial fish size. Tags were also mounted on polyvinyl chloride pipes and exposed to freshwater, brackish-water, and saltwater environments for 1 year. The brackish-water environment was harsher than either freshwater or salt water and had a greater density of fouling organisms. Legibility was poor for the Floy streamer, and Floy tag sheaths sometimes moved and obscured the printing. Failure rates (printing loss or tag loss) for the Floy tags (36%) were about six times higher than the Hallprint tags (6%). An analysis of 369 anchor tags returned by striped bass fishers indicated that the tag was illegible when more than 43 printed characters were lost and that illegibility increased over time. None of the tags tested was considered appropriate for tagging juvenile striped bass, but changes in tag design, material, and insertion could improve tag retention and survival.

North American Journal of Fisheries Management↗

USGS2001

Short-duration electrical immobilization of lake trout

Chemical anesthetics induce stress responses, and most leave residues in fish tissues that require a certain withdrawal time before the animal can be released into the environment. Therefore, alternatives are needed in cases when fish must be released immediately, for example, during egg-collecting operations or after implanting elastomer tags. To evaluate pulsed direct current as an alternative method of immobilization, individual lake trout Salvelinus namaycush were electrically immobilized using various pulsed-DC voltage gradients and shock durations. Duration of opercular recovery and narcosis were measured for individual fish. Fish were euthanized 24 h after electrical immobilization and processed for lateral radiograph analysis and assessment of perivertebral hemorrhaging by dissection. Survival of lake trout after electrical immobilization at 0.6 V/cm for 30 or 40 s or 0.8 V/cm for 5 or 15 s was monitored for 81 or 84 d after immobilization. Mean narcosis duration increased with voltage gradient and shock duration. Larger fish had longer periods of narcosis at the same combination of voltage gradient and shock duration. Radiological evaluation indicated that 9 of 28 fish in the oldest age-class tested had detectable injuries of the vertebral column, but all but one were in the lowest injury category. Although vertebral column injuries were observed in most small fish, the majority of vertebral column injuries were minor compressions involving two to seven vertebrae. Of the 82 lake trout electrically immobilized to assess long-term survival, only 5 died (6%). Our data suggest that lake trout could be electrically immobilized for a sufficient period to allow field workers to collect length and weight data and implant visible implant tags or colored elastomer tags. The technique we used, however, is probably not appropriate for procedures that require immobilization for more than 2–3 min.

North American Journal of Fisheries Management↗

USGS2005

Submersed Aquatic Vegetation Modeling Output Online

Introduction The ability to predict the distribution of submersed aquatic vegetation in the Upper Mississippi River on the basis of physical or chemical variables is useful to resource managers. Wildlife managers have a keen interest in advanced estimates of food quantity such as American wildcelery (Vallisneria americana) population status to give out more informed advisories to hunters before the fall hunting season. Predictions for distribution of submerged aquatic vegetation beds can potentially increase hunter observance of voluntary avoidance zones where foraging birds are left alone to feed undisturbed. In years when submersed aquatic vegetation is predicted to be scarce in important wildlife habitats, managers can get the message out to hunters well before the hunting season (Jim Nissen, Upper Mississippi River National Wildlife and Fish Refuge, La Crosse District Manager, La Crosse, Wisconsin, personal communication). We developed a statistical model to predict the probability of occurrence of submersed aquatic vegetation in Pool 8 of the Upper Mississippi River on the basis of a few hydrological, physical, and geomorphic variables. Our model takes into consideration flow velocity, wind fetch, bathymetry, growing-season daily water level, and light extinction coefficient in the river (fig. 1) and calculates the probability of submersed aquatic vegetation existence in Pool 8 in individual 5- x 5-m grid cells. The model was calibrated using the data collected in 1998 (516 sites), 1999 (595 sites), and 2000 (649 sites) using a stratified random sampling protocol (Yin and others, 2000b). To validate the model, we chose the data from the Long Term Resource Monitoring Program (LTRMP) transect sampling in backwater areas (Rogers and Owens 1995; Yin and others, 2000a) and ran the model for each 5- x 5-m grid cell in every growing season from 1991 to 2001. We tallied all the cells and came up with an annual average percent frequency of submersed aquatic vegetation occurrence and compared the results with actual LTRMP survey data (fig. 2). Both a paired Student's test (P = 0.4620) and a Wilcoxon's two-sample test (P = 0.4738) did not contradict our null hypothesis that the model prediction and the sampling data are statistically the same. We have not found an effective statistical test to compare model-predicted spatial pattern with aerial photography geographic information, but we are satisfied with the model's outcome on the basis of visual inspection (fig. 3). A unique feature about this model is that a prediction can be made by the end of June each year; therefore, providing wildlife managers an assessment of current year vegetation growth condition 3 to 4 months ahead of the arrival of migrating waterfowl that feed on submersed aquatic vegetation. We are working with the LTRMP partnership to create a mechanism so that model predictions (fig. 4) can be updated annually and the results posted on the LTRMP Web site. Our model underestimated the prevalence of vegetation from 2001 to 2004. We speculate that the summer water level reduction conducted in 2001 and 2002 triggered vegetation responses that are outside the model's domain. Future enhancement of the model will incorporate the summer water level drawdown effects as well as the effects of growth conditions in previous years.

Open-File Report↗

USGS2021

Efficacy of fenbendazole and ivermectin against Trichuris spp. in African green monkeys (Chlorocebus sabaeus) in Barbados West Indies

Trichuris spp. are common helminths in NHP, and benzimidazoles and avermectins have both been used to treat these intestinal parasites. The current study compared the efficacy of fenbendazole and ivermectin against natural infection of Trichuris spp. in African green monkeys ( Chlorocebus sabaeus ). Anthelmintic-naive animals ( n = 65) were randomly assigned to 4 groups: an untreated control group, and 3 groups treated with either fenbendazole, ivermectin, or both compounds. Fecal samples were collected before treatment and on days 7, 14, 28, and 60 after treatment, and fecal egg counts (FEC) were determined by using fecal flotation. The mean percentages of FEC reduction at day 60 were 100%, 86%, and 100% for treatment with fenbendazole, ivermectin, and both compounds, respectively. Analyzing the time series of FEC by using a Bayesian generalized linear model showed no significant difference in the proportional reduction in FEC among the 3 treatment groups, although all FEC from treated groups were significantly lower than the FEC of the control group. In contrast, the probability of shedding was highest in the ivermectin group and the lowest in the animals treated with both compounds. The probability of shedding differed significantly between the fenbendazole and ivermectin groups and between the ivermectin and combined-treatment groups. In conclusion, both fenbendazole and ivermectin are effective anthelmintics in treating Trichuris spp. infection in African green monkeys. All treatment groups showed significant reductions in FEC when compared with baseline counts and control animals; however, fenbendazole may be more effective than ivermectin when used solely or in combination with other anthelmintic treatments.

Journal of the American Association for Laboratory↗

USGS2017

Evaluation of genetic population structure of smallmouth bass in the Susquehanna River basin, Pennsylvania

The Smallmouth Bass Micropterus dolomieu was introduced into the Susquehanna River basin, Pennsylvania, nearly 150 years ago. Since introduction, it has become an economically and ecologically important species that supports popular recreational fisheries. It is also one of the most abundant top predators in the system. Currently, there is no information on the level of genetic diversity or genetic structuring that may have occurred since introduction. An understanding of genetic diversity is important for the delineation of management units and investigation of gene flow at various management scales. The goals of this research were to investigate population genetic structure of Smallmouth Bass at sites within the Susquehanna River basin and to assess genetic differentiation relative to Smallmouth Bass at an out-of-basin site (Allegheny River, Pennsylvania) located within the species’ native range. During spring 2015, fin clips ( n = 1,034) were collected from adults at 11 river sites and 13 tributary sites in the Susquehanna River basin and at one site on the Allegheny River. Fin clips were genotyped at 12 polymorphic microsatellite loci. Based on our results, adults sampled throughout the Susquehanna River basin did not represent separate genetic populations. There were only subtle differences in genetic diversity among sites (mean pairwise genetic differentiation index F ST = 0.012), and there was an overall lack of population differentiation ( K = 3 admixed populations). The greatest genetic differentiation was observed between fish collected from the out-of-basin site and those from the Susquehanna River basin sites. Knowledge that separate genetic populations of Smallmouth Bass do not exist in the Susquehanna River basin is valuable information for fisheries management in addition to providing baseline genetic data on an introduced sport fish population.

Pennsylvania↗

USGS2021

Assessing potential stock structure of adult Coho Salmon in a small Alaska watershed: Quantifying run timing, spawning locations, and holding areas with radiotelemetry

Run timing and spatial locations of spawning habitats are often used to identify stocks for conservation planning or management of salmonid fishes. Although complex stock structure is most common within large watersheds with diverse habitats, even small drainages can produce multiple co-occurring spatially or temporally isolated populations or “stocks.” This project sought to address the potential existence of stock structure of Coho Salmon Oncorhynchus kisutch in a small coastal watershed on Kodiak, Alaska that supports vital subsistence and recreational fisheries and is currently managed as a single stock. We radio-tagged a total of 348 adult Coho Salmon upon freshwater entry into the Buskin River across three spawning seasons (2015–2017) and tracked in-river movements to the final locations where mortality signals were recorded. We identified two primary spawning habitats within the system: main-stem and lake tributaries, with 54% (range of 47% to 61%) of tagged fish with determined fates tracked to main-stem river spawning areas and 46% (range 39% to 53%) presumably spawning in small tributaries of the 1-km 2 Buskin Lake at the headwater of the watershed. Despite distinct spatial differences in spawning locations, main-stem and tributary spawners did not differ in migration timing into freshwater (difference in run timing of main-stem versus tributary spawners = 1 d) nor body size (main-stem mean body length, mideye to tail fork = 625 mm, tributary mean = 613 mm). Unexpectedly, we determined nearly 70% of all Coho Salmon spent at least some time in Buskin Lake, including 54% of main-stem spawners, suggesting a potential role of Buskin Lake as an important staging habitat for premature migrating adult Coho Salmon who enter freshwater in advance of final maturation. We also identified areas consistently used for holding prior to spawning that could be used in spatial management planning and during times of necessary conservation to ensure integrity of the stock for the future.

Alaska↗

USGS2019

Brood size affects future reproduction in a long-lived bird with precocial young

Estimation of trade-offs between current reproduction and future survival and fecundity of long-lived vertebrates is essential to understanding factors that shape optimal reproductive investment. Black brant geese (Branta bernicla nigricans) fledge more goslings, on average, when their broods are experimentally enlarged to be greater than the most common clutch size of four eggs. Thus, we hypothesized that the lesser frequency of brant clutches exceeding four eggs results, at least partially, from a future reduction in survival, breeding probability, or clutch size for females tending larger broods. We used an eight-year mark-recapture dataset (Barker robust design) with five years of clutch and brood manipulations to estimate long-term consequences of reproductive decisions in brant. We did not find evidence of a trade-off between reproductive effort and true survival or future initiation date and clutch size. Rather, future breeding probability was maximized (0.92 ± 0.03 [se]) for manipulated females tending broods of four goslings and lower for females tending smaller (one gosling; 0.63 ± 0.09 [se]) or larger broods (seven goslings; 0.52 ± 0.15 [se]). Our results suggest that demographic trade-offs for female brant tending large broods may reduce the fitness value of clutches larger than four and, therefore, contribute to the paucity of larger clutches. The lack of a trade-off between reproductive effort and survival provides evidence that survival, to which fitness is most sensitive in long-lived animals, is buffered against temporal variation in brant.

American Naturalist↗