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At least 937 records · Page 52Linked to original sources
USGS2004

Water flow and nutrient flux from five estuarine rivers along the southwest coast of the Everglades National Park, Florida, 1997-2001

Discharge and nutrient fluxes for five tidally affected streams were monitored and evaluated as a part of the U.S. Geological Survey Place-Based Studies Initiative and the U.S. Department of the Interior Critical Ecosystem Studies Initiative. Locations on Lostmans Creek, and Broad, Harney, Shark, and North Rivers were selected using the criterion that a large amount of the water that flows through Shark River Slough must pass these sites. Discharge and nutrient-concentration data collection started at the Broad, Harney, and Shark River stations in January 1997 and ended in early 2001. Discharge and nutrient-concentration data collection started at the Lostmans Creek and North River stations in April 1999 and ended in early 2001. Each station was equipped with a vertically oriented acoustic-velocity sensor, water-level pressure transducer, bottom water-temperature thermistor, and specific conductance four-electrode sensor. Data collected using a vessel-mounted acoustic discharge measurement system were used to calibrate regression models of the mean river velocities and the in-situ index velocities. Information from these stations, in conjunction with data from other ongoing studies, will help to determine environmental effects on the southwest coast estuaries as changes in water management of the Everglades National Park continue. Discharges from the Lostmans Creek, and Broad, Harney, Shark, and North River stations are influenced by semidiurnal tides, meteorological events, and surface- and ground-water inflow. Each of the five rivers is usually well mixed, having no greater than 500 microSiemens per centimeter at 25? Celsius difference in specific conductance from top to bottom during flood and ebb tides. Instantaneous flood discharges (water moving upstream) are typically of greater magnitude and shorter duration than instantaneous ebb discharges (water moving downstream). Instantaneous discharge data were filtered using a low-pass filter to remove predominant tidal frequencies, and the filtered data were used to compute daily mean and monthly mean residual discharges. Lostmans Creek, and Broad, Harney and Shark Rivers each contributed from 20 to 27 percent of the total measured discharge to the Gulf of Mexico, whereas North River contributed approximately 4 percent. The main discharge region of the Shark River Slough extends from as far north as Lostmans Creek to as far south as North River. North River discharge has similar response characteristics to the other four rivers measured, but with a lesser magnitude of discharge. Comparisons of monthly mean discharges from the Tamiami Canal flow control structures S-12-A, B, C, and D located on U.S. Highway 41 (Tamiami Trail) to the five station total monthly mean discharges indicate that the discharges from the five rivers are approximately 2 to 3 times the S-12-A, B, C, D discharges, and that the measured southwest coast discharge peaks lead the S-12-A, B, C, D discharge peaks by approximately 1 month. Residual total nitrogen and total phosphorus fluxes were estimated using linear regression models of discharge and flux. Monthly mean total nitrogen residual fluxes for the five southwest coast rivers ranged from approximately 0 to 390 short tons, whereas monthly mean total phosphorus residual fluxes ranged from approximately 0 to 6 short tons. Total nitrogen and total phosphorus residual fluxes at Lostmans Creek, and Broad, Harney, and Shark Rivers were similar in magnitude, each accounting for between 20 to 29 percent of the total measured residual flux. North River contributed between 3 to 4 percent of the total nitrogen and total phosphorus residual flux from the five rivers.

Florida↗
USGS2024

Perspectives on equitable co-production workshop report

The co-production of knowledge is increasingly recognized as an approach to conducting research intended to achieve a societal impact. In this study, we used a broad definition of co-production, defining it as “a process that brings together diverse groups to iteratively create new knowledge and practices (1).” However, co-production has been defined and conceptualized in a variety of ways (2,3), across multiple domains, including public administration, conservation, health, education, and climate change. Theoretical definitions have been introduced by scholars like Jasanoff (4) and Ostrom (5), but definitions can also be grounded in practice (6). For example, unique definitions of co-production have been advanced for work with Arctic Indigenous Peoples (7), in the context of resource management (8), and for a specific program (9). Other similar processes of engagement, such as community-based participatory research (10), action research (11), civic science (12), community science (13), and post-normal science (14) may have overlap with the concept of co-production and have been used to describe similar processes of collaboration. These distinctions and varying definitions have been discussed extensively elsewhere (see Mach et al. 2020, Wyborn et al. 2019). In the context of co-production, power plays a crucial role in shaping interactions and outcomes. Some scholars and practitioners explicitly consider power dynamics as a central element in their definitions of co-production, recognizing how power imbalances can affect participation, decision-making, and the distribution of benefits. Others, however, might not emphasize power as prominently, focusing more on the collaborative aspects without explicitly addressing the underlying power structures. This leads to divergent objectives and priorities among projects claiming to be co-produced (2,3, 6). Chambers and colleagues (2) discussed how co-production projects in the context of sustainability usually emphasize one or more of six different goals, including: researching solutions, empowering voices, brokering power, reframing power, navigating differences, and reframing agency. Because power dynamics are inherent in co-production (15), equity dimensions should be considered in these definitions and conceptualizations. Yet, in the context of government or academically led climate change research and programs, equity is a relatively new focus, even among programs that have been engaging a co-production approach for decades (9). Alternatively, in some recent work the concept of equity in co-production is explicit, but it has only been considered in a limited context (7). Here, we present a discussion about co-production that is informed by research, practice, and community perspectives across partnerships from a range of regions and topics. We are specifically interested in how different actors in these projects think about equity and work towards more equitable approaches in the context of their co-production work. This understanding is needed, as the federal government has increasingly focused on co-production approaches in the design of their programs and funding calls, and most recently the Biden administration has called on federal agencies to more intentionally center equity for underserved groups of people in their work (16). Furthermore, with the Biden administration’s focus on environmental and climate justice, the opportunity for researchers and their societal partners to engage in co-production is expanding. Numerous programs within federal agencies have embraced a co-production approach, such as the National Oceanic and Atmospheric Administration (NOAA) Climate Adaptation Partnerships (CAP; formerly called the Regional Integrated Sciences and Assessments or RISA program) (9,17), Department of the Interior (DOI) Climate Adaptation Science Centers (CASCs)(18), and the US Department of Agriculture (USDA) Climate Hubs. However, the actual implementation of co-production processes varies significantly (1,19), with multiple implications for the design of equitable partnerships. Researchers, their partners, and funders have frequently cited many tensions and challenges in the successful implementation of co-production, including higher resource demands and few systemic structures for support (20). Practically implementing co-production, especially with people who have been underrepresented in or historically excluded from research activities, must consider fairness and the accessibility of co-production processes. While co-production is often cited as important for environmental governance, issues like power and equity are infrequently addressed (15). To explore this topic, we identified and studied three projects that centered on equity in co-production from three federal climate programs (CASC, CAP, USDA Climate Hubs) in three different regions of the U.S. (Alaska, Northeast, Southeast). We aimed to identify consensus or divergence in perspectives related to equitable co-production processes to elevate effective practices and link co-production research and practice. Findings from interviews and a survey (explained further in Akerlof et al., 2023) informed a twoday hybrid workshop involving participants from the three case studies, as well as individuals representing research, governmental, non-governmental, and community organizations across the United States. Participants also included scholars of co-production, program coordinators, and people who participated in co-production projects on behalf of their communities. Several boundary spanners, those practitioners who work at the intersection of the production and use of science (21,22), also attended the workshop. The goals of the workshop were to discuss and build on what was learned from the three case studies, discuss the three distinct perspectives on equitable co-production that emerged from the pre-workshop research, and draft a framework for equitable co-production processes. During the workshop, participants considered the three perspectives on equitable co-production, defining equitable co-production for each and discussing the practical implications of each, including barriers and priorities for overcoming them. We aimed to address the question: How can federal climate programs support equitable co-production processes?

Report↗
USGS1983

Subsidence from underground mining; environmental analysis and planning considerations

Subsidence, a universal process that occurs in response to the voids created by extracting solids or liquids from beneath the Earth's surface, is controlled by many factors including mining methods, depth of extraction, thickness of deposit, and topography, as well as the in situ properties of the rock mass above the deposit. The impacts of subsidence are potentially severe in terms of damage to surface utility lines and structures, changes in surface-water and ground-water conditions, and effects on vegetation and animals. Although subsidence cannot be eliminated, it can be reduced or controlled in areas where deformation of the ground surface would produce dangerous or costly effects. Subsidence prediction is highly developed in Europe where there are comparatively uniform mining conditions and a long history of field measurements. Much of this mining has been carried out beneath crowded urban and industrial areas where accurate predictions have facilitated use of the surface and reduced undesirable impacts. Concerted efforts to understand subsidence processes in the United States are recent. Empirical methods of subsidence analysis and prediction based on local conditions seem better suited to the current state of knowledge of the varied geologic and topographic conditions in domestic coal mining regions than do theoretical/mathematical approaches. In order to develop broadly applicable subsidence prediction methods and models for the United States, more information is needed on magnitude and timing of ground movements and geologic properties.

Circular↗
USGS1972

The future of salmonid communities in the Laurentian Great Lakes

The effects of human population growth, industrialization, and the introduction of marine fishes have reduced the suitability of each of the Great Lakes for oligotrophic fish communities. The ultimate consequence has been a reduction of fishery productivity that has ranged from extreme in Lake Ontario to moderate in Lake Superior. If measures are not taken to alleviate the adverse effects of marine invaders and trends in environmental quality, a major reduction in fishery productivity can eventually be expected throughout the Great Lakes.Prospects for the next century will be improved if the lakes can be intensively managed. More stringent control of the sea lamprey ( Petromyzon marinus ), and subsequent reduction of the alewife ( Alosa pseudoharengus ), by the reestablishment of populations of large piscivores, should permit the recovery of some of the previous predator and prey species, or the development of populations of new species that are more compatible with a reduced number of lampreys. Even if marine species can be reduced greatly, the full restoration of the former fishery productivity remains uncertain and will require a high degree of coordination among all management and research agencies that have responsibilities on the Great Lakes.Unfavorable trends toward progressive degradation of water quality pose the greatest threat to restoration of the fishery resources of the Great Lakes. Where changes in water quality have been the greatest, oligotrophic species have become scarce or absent, and in the deepwater regions no other species have reoccupied the vacated niches.

Journal of the Fisheries Research Board of Canada↗
USGS2021

Historical changes in plant water use and need in the continental United States

A robust method for characterizing the biophysical environment of terrestrial vegetation uses the relationship between Actual Evapotranspiration (AET) and Climatic Water Deficit (CWD). These variables are usually estimated from a water balance model rather than measured directly and are often more representative of ecologically-significant changes than temperature or precipitation. We evaluate trends and spatial patterns in AET and CWD in the Continental United States (CONUS) during 1980–2019 using a gridded water balance model. The western US had linear regression slopes indicating increasing CWD and decreasing AET (drying), while the eastern US had generally opposite trends. When limits to plant performance characterized by AET and CWD are exceeded, vegetation assemblages change. Widespread increases in aridity throughout the west portends shifts in the distribution of plants limited by available moisture. A detailed look at Sequoia National Park illustrates the high degree of fine-scale spatial variability that exists across elevation and topographical gradients. Where such topographical and climatic diversity exists, appropriate use of our gridded data will require sub-setting to an appropriate area and analyzing according to categories of interest such as vegetation communities or across obvious physical gradients. Recent studies have successfully applied similar water balance models to fire risk and forest structure in both western and eastern U.S. forests, arid-land spring discharge, amphibian colonization and persistence in wetlands, whitebark pine mortality and establishment, and the distribution of arid-land grass species and landscape scale vegetation condition. Our gridded dataset is available free for public use. Our findings illustrate how a simple water balance model can identify important trends and patterns at site to regional scales. However, at finer scales, environmental heterogeneity is driving a range of responses that may not be simply characterized by a single trend.

PLoS ONE↗
USGS2019

Flow modification in the Nation’s streams and rivers

This report summarizes a national assessment of flowing waters conducted by the U.S. Geological Survey’s (USGS) National Water-Quality Assessment (NAWQA) Project and addresses several pressing questions about the modification of natural flows in streams and rivers. The assessment is based on the integration, modeling, and synthesis of monitoring data collected by the USGS and the U.S. Environmental Protection Agency at more than 7,000 streams and rivers across the conterminous United States from 1980 to 2014. Key findings include the following. First, flow in many of the Nation’s streams and rivers is different from what it would be under natural conditions. In particular, low flows are more frequent, are of shorter duration, and vary less from one year to the next than they would naturally. In addition, high flows have been reduced in magnitude, are of shorter duration, are less frequent, and vary less from one year to the next than they would naturally. Other characteristics of natural flows also have been modified. Second, over the last 60 years (1955–2014), climatic trends have caused a change of 50 percent or more in one or more streamflow attributes at two-thirds of climate-sensitive streamgaging sites. However, these climate-induced changes have been less influential on streamflow modification than have land and water-management practices. Third, in every region assessed, streamflow modification was associated with reduced ecological health, as indicated by two biological communities—invertebrates and fish. Biological communities were increasingly likely to be impaired (defined as having lost a statistically significant number of species) in streams with flows most different from natural conditions. Finally, several case studies are presented that illustrate viable management strategies for balancing the water needs of people and ecosystems.

Circular↗
USGS2021

Towards an urgent yet deliberate conservation strategy: Sustaining social-ecological systems in rangelands of the Northern Great Plains, Montana

Urgency and deliberateness are often at odds when executing conservation projects, especially as the scale and complexity of objectives increases. The pace of environmental degradation supports immediate and measurable action. However, best practices for adaptive governance and building resilient social-ecological systems call for more deliberate efforts and participatory processes, which can be slow. We explore conflicts between urgency and deliberateness and the potential for their reconciliation through a case study of the challenges of conserving native rangelands in North America’s Northern Great Plains, an ecoregion targeted for global conservation initiatives. This region is undergoing a significant social-ecological transition, which underscores a need to rethink conservation strategies in light of the social-ecological system dynamics and potential future trajectories. Based on a structured narrative literature review process and iterative engagement with key regional stakeholders, we identify three interrelated factors critical to the system’s future outcomes that illustrate system complexity as well as trade-offs between urgent and deliberate action and unilateral and multilateral approaches to conservation: (1) influences of land management on biodiversity, (2) economic restructuring and shifting land use priorities, and (3) changing climate and disturbance regimes. We identify key gaps in the literature for each factor and across the factors—an effort that informs our call for research and practice agendas that address uncertainty and complexity at regional scales through more inclusive and future-oriented approaches.

Montana↗
USGS2025

The importance of peripheral populations in the face of novel environmental change

Anthropogenically driven environmental change has imposed substantial threats on biodiversity, including the emergence of infectious diseases that have resulted in declines of wildlife globally. In response to pathogen invasion, maintaining diversity within host populations across heterogenous environments is essential to facilitating species persistence. White-nose syndrome is an emerging fungal pathogen that has caused mass mortalities of hibernating bats across North America. However, in the northeast, peripheral island populations of the endangered northern myotis ( Myotis septentrionalis ) appear to be persisting despite infection while mainland populations in the core of the species range have experienced sharp declines. Thus, this study investigated host and environmental factors that may contribute to divergent population responses. We compared patterns of pathogen exposure and infection intensity between populations and documented the environmental conditions and host activity patterns that may promote survival despite disease invasion. For island populations, we found lower prevalence and less severe infections, possibly due to a shorter hibernation duration compared to the mainland, which may reduce the time for disease progression. The coastal region of the northern myotis range may serve as habitat refugia that enables this species to persist despite pathogen exposure; however, conservation efforts could be critical to supporting species survival in the long term.

Proceedings of the Royal Society B, Biological Sci↗
USGS2015

An integrated approach to modeling changes in land use, land cover, and disturbance and their impact on ecosystem carbon dynamics: a case study in the Sierra Nevada Mountains of California

Increased land-use intensity (e.g. clearing of forests for cultivation, urbanization), often results in the loss of ecosystem carbon storage, while changes in productivity resulting from climate change may either help offset or exacerbate losses. However, there are large uncertainties in how land and climate systems will evolve and interact to shape future ecosystem carbon dynamics. To address this we developed the Land Use and Carbon Scenario Simulator (LUCAS) to track changes in land use, land cover, land management, and disturbance, and their impact on ecosystem carbon storage and flux within a scenario-based framework. We have combined a state-and-transition simulation model (STSM) of land change with a stock and flow model of carbon dynamics. Land-change projections downscaled from the Intergovernmental Panel on Climate Change’s (IPCC) Special Report on Emission Scenarios (SRES) were used to drive changes within the STSM, while the Integrated Biosphere Simulator (IBIS) ecosystem model was used to derive input parameters for the carbon stock and flow model. The model was applied to the Sierra Nevada Mountains ecoregion in California, USA, a region prone to large wildfires and a forestry sector projected to intensify over the next century. Three scenario simulations were conducted, including a calibration scenario, a climate-change scenario, and an integrated climate- and land-change scenario. Based on results from the calibration scenario, the LUCAS age-structured carbon accounting model was able to accurately reproduce results obtained from the process-based biogeochemical model. Under the climate-only scenario, the ecoregion was projected to be a reliable net sink of carbon, however, when land use and disturbance were introduced, the ecoregion switched to become a net source. This research demonstrates how an integrated approach to carbon accounting can be used to evaluate various drivers of ecosystem carbon change in a robust, yet transparent modeling environment.

California↗
USGS2025

Sediment transport modeling in Lake Ontario embayments: Impacts on fish spawning substrates

Anthropogenically-driven sedimentation changes have had adverse environmental impacts on aquatic environments, including reductions in fish spawning habitats in embayments worldwide. This study was motivated by the need to understand the impacts of waves and current-driven sedimentation patterns on traditional spawning areas and their effect on sustainable fish reproduction in the Great Lakes. Coupled hydrodynamic, wave, and sediment transport models were developed within the Delft3D-SWAN (DS) framework to predict sedimentation patterns in two embayments in Lake Ontario, Sodus Bay and Chaumont Bay, that have been historically important fish spawning habitats. These bays, with distinct geomorphic characteristics and connectivity to Lake Ontario, offer an opportunity to examine how wind-generated waves and currents impact bed shear stress and subsequent sedimentation patterns. Areas experiencing greater wave-induced bed shear stress were identified and compared between the two bays. Simulated sediment transport patterns showed notable erosion near the lake-bay connections and increased deposition in the inner areas of both embayments. Observed Cisco embryo deposition corresponded to regions of high sheer stress and lower sedimentation, indicating physical attributes in those areas that are important for embryo survival. These results show where sediment settling and erosion occur in the two bays and highlight potential impacts on traditional spawning areas.

New York↗
USGS2016

Surface water connectivity drives richness and composition of Arctic lake fish assemblages

Surface water connectivity can influence the richness and composition of fish assemblages, particularly in harsh environments where colonisation factors and access to seasonal refugia are required for species persistence. Studies regarding influence of connectivity on Arctic fish distributions are limited and are rarely applied to whole assemblage patterns. To increase our understanding of how surface water connectivity and related hydrologic variables influence assemblage patterns, we investigated species richness and composition of Arctic lake fishes over a large region, 8500 km 2 , of the central Arctic Coastal Plain, Alaska. We collected fish presence/non-detection data from 102 lakes and used a hierarchical multispecies occupancy framework to derive species richness and inform species composition patterns. Our mean estimate of regional richness was 12.3 (SD 0.5) species. Presence of a permanent channel connection was an overriding factor affecting species richness (mean 3.6, 95% CI 3.1–4.9), presumably driving lake colonisation potential. In lakes without a permanent channel connection, data suggest richness (mean 2.0, 95% CI 1.7–3.3) increased with the availability of in-lake winter refugia and with the potential of ephemeral connections during spring floods. Fish species functional traits and environmental faunal filters contributed to patterns of richness and assemblage composition. Composition corresponded with richness in a coherent manner, where each successive level of richness contained several discrete assemblages that showed similar responses to the environment. Lakes with permanent channel connections contained both widespread and restricted species, while the species-poor lakes that lacked a connection contained mainly widespread species. This work provides useful baseline information on the processes that drive the relations between patch connectivity and fish species richness and assemblage composition. The environmental processes that organise fish assemblages in Arctic lakes are likely to change in a warming climate.

Freshwater Biology↗
USGS2012

Small population size of Pribilof Rock Sandpipers confirmed through distance-sampling surveys in Alaska

The Rock Sandpiper ( Calidris ptilocnemis ) is endemic to the Bering Sea region and unique among shorebirds in the North Pacific for wintering at high latitudes. The nominate subspecies, the Pribilof Rock Sandpiper ( C. p. ptilocnemis ), breeds on four isolated islands in the Bering Sea and appears to spend the winter primarily in Cook Inlet, Alaska. We used a stratified systematic sampling design and line-transect method to survey the entire breeding range of this population during springs 2001-2003. Densities were up to four times higher on the uninhabited and more northerly St. Matthew and Hall islands than on St. Paul and St. George islands, which both have small human settlements and introduced reindeer herds. Differences in density, however, appeared to be more related to differences in vegetation than to anthropogenic factors, raising some concern for prospective effects of climate change. We estimated the total population at 19 832 birds (95% CI 17 853–21 930), ranking it among the smallest of North American shorebird populations. To determine the vulnerability of C. p. ptilocnemis to anthropogenic and stochastic environmental threats, future studies should focus on determining the amount of gene flow among island subpopulations, the full extent of the subspecies' winter range, and the current trajectory of this small population.

Alaska↗
USGS2011

Aeolian and fluvial processes in dryland regions: The need for integrated studies

Aeolian and fluvial processes play a fundamental role in dryland regions of the world and have important environmental and ecological consequences from local to global scales. Although both processes operate over similar spatial and temporal scales and are likely strongly coupled in many dryland systems, aeolian and fluvial processes have traditionally been studied separately, making it difficult to assess their relative importance in drylands, as well as their potential for synergistic interaction. Land degradation by accelerated wind and water erosion is a major problem throughout the world's drylands, and although recent studies suggest that these processes likely interact across broad spatial and temporal scales to amplify the transport of soil resources from and within drylands, many researchers and land managers continue to view them as separate and unrelated processes. Here, we illustrate how aeolian and fluvial sediment transport is coupled at multiple spatial and temporal scales and highlight the need for these interrelated processes to be studied from a more integrated perspective that crosses traditional disciplinary boundaries. Special attention is given to how the growing threat of climate change and land‐use disturbance will influence linkages between aeolian and fluvial processes in the future. We also present emerging directions for interdisciplinary needs within the aeolian and fluvial research communities that call for better integration across a broad range of traditional disciplines such as ecology, biogeochemistry, agronomy, and soil conservation.

California↗
USGS2017

Sulfolobus islandicus meta-populations in Yellowstone National Park hot springs

Abiotic and biotic forces shape the structure and evolution of microbial populations. We investigated forces that shape the spatial and temporal population structure of Sulfolobus islandicus by comparing geochemical and molecular analysis from seven hot springs in five regions sampled over 3 years in Yellowstone National Park. Through deep amplicon sequencing, we uncovered 148 unique alleles at two loci whose relative frequency provides clear evidence for independent populations in different hot springs. Although geography controls regional geochemical composition and population differentiation, temporal changes in population were not explained by corresponding variation in geochemistry. The data suggest that the influence of extinction, bottleneck events and/or selective sweeps within a spring and low migration between springs shape these populations. We suggest that hydrologic events such as storm events and surface snowmelt runoff destabilize smaller hot spring environments with smaller populations and result in high variation in the S. islandicus population over time. Therefore, physical abiotic features such as hot spring size and position in the landscape are important factors shaping the stability and diversity of the S. islandicus meta-population within Yellowstone National Park.

Wyoming↗
USGS2004

Assessing development pressure in the Chesapeake Bay watershed: An evaluation of two land-use change models

Natural resource lands in the Chesapeake Bay watershed are increasingly susceptible to conversion into developed land uses, particularly as the demand for residential development grows. We assessed development pressure in the Baltimore-Washington, DC region, one of the major urban and suburban centers in the watershed. We explored the utility of two modeling approaches for forecasting future development trends and patterns by comparing results from a cellular automata model, SLEUTH (slope, land use, excluded land, urban extent, transportation), and a supply/demand/allocation model, the Western Futures Model. SLEUTH can be classified as a land-cover change model and produces projections on the basis of historic trends of changes in the extent and patterns of developed land and future land protection scenarios. The Western Futures Model derives forecasts from historic trends in housing units, a U.S. Census variable, and exogenously supplied future population projections. Each approach has strengths and weaknesses, and combining the two has advantages and limitations. ?? 2004 Kluwer Academic Publishers.

Environmental Monitoring and Assessment↗
USGS2011

Survival, growth and reproduction of non-indigenous Nile tilapia, Oreochromis niloticus (Linnaeus 1758). I. Physiological capabilities in various temperatures and salinities

The physiological tolerances of non-native fishes is an integral component of assessing potential invasive risk. Salinity and temperature are environmental variables that limit the spread of many non-native fishes. We hypothesised that combinations of temperature and salinity will interact to affect survival, growth, and reproduction of Nile tilapia, Oreochromis niloticus , introduced into Mississippi, USA. Tilapia withstood acute transfer from fresh water up to a salinity of 20 and survived gradual transfer up to 60 at typical summertime (30°C) temperatures. However, cold temperature (14°C) reduced survival of fish in saline waters ≥10 and increased the incidence of disease in freshwater controls. Although fish were able to equilibrate to saline waters in warm temperatures, reproductive parameters were reduced at salinities ≥30. These integrated responses suggest that Nile tilapia can invade coastal areas beyond their point of introduction. However, successful invasion is subject to two caveats: (1) wintertime survival depends on finding thermal refugia, and (2) reproduction is hampered in regions where salinities are ≥30. These data are vital to predicting the invasion of non-native fishes into coastal watersheds. This is particularly important given the predicted changes in coastal landscapes due to global climate change and sea-level rise.

Mississippi↗
USGS2025

Shotgun sequencing of airborne eDNA achieves rapid assessment of whole biomes, population genetics and genomic variation

Biodiversity and its associated genetic diversity are being lost at an unprecedented rate. Simultaneously, the distributions of flora, fauna, fungi, microbes and pathogens are rapidly changing. Novel technology can help to capture and record genetic diversity before it is lost and to measure population shifts and pathogen distributions. Here we report the rapid application of shotgun long-read environmental DNA (eDNA) analysis for non-invasive biodiversity, genetic diversity and pathogen assessments from air. We also compared air eDNA with water and soil eDNA. Coupling long-read sequencing with established cloud-based biodiversity pipelines enabled a 2-day turnaround from airborne sample collection to completed analysis by a single investigator. To determine the full utility of airborne eDNA, we also conducted a local bioinformatic analysis and deep short-read shotgun sequencing. From outdoor air eDNA alone, comprehensive genetic analysis was performed, including population genetics (phylogenetic placement) of a charismatic mammal (bobcat, Lynx rufus ) and a venomous spider (golden silk orb weaver, Trichonephila clavipes ), and haplotyping humans ( Homo sapiens ) from natural complex community settings, such as subtropical forests and temperate locations. The rich datasets also enabled deeper analysis of specific species and genomic regions of interest, including viral variant calling, human variant analysis and antimicrobial resistance gene surveillance from airborne DNA. Our results highlight the speed, versatility and specificity of pan-biodiversity monitoring via non-invasive eDNA sampling using current benchtop/portable and cloud-based approaches. Furthermore, they reveal the future feasibility of scaling down (equipment and temporally) these approaches for near real-time analysis. Together these approaches can enable rapid simultaneous detection of all life and its genetic diversity from air, water and sediment samples for unbiased non-targeted information-rich genomics-empowered (1) biodiversity monitoring, (2) population genetics, (3) pathogen and disease-vector genomic surveillance, (4) allergen and narcotic surveillance, (5) antimicrobial resistance surveillance and (6) bioprospecting.

Nature Ecology & Evolution↗
USGS2019

Salinity and water clarity dictate seasonal variability in coastal submerged aquatic vegetation in subtropical estuarine environments

Spatial and temporal variability characterize submerged aquatic vegetation (SAV) assemblages, but understanding the complex interactions of environmental drivers of SAV assemblages remains elusive. We documented SAV composition and biomass across a salinity gradient in a coastal estuary over 12 mo. Ten macrophyte species were identified. The dominant species, Ceratophyllum demersum and Myriophyllum spicatum, accounted for over 40% of total biomass. Only Ruppia maritima occurred across the salinity gradient. Salinity, water depth and clarity delineated 3 assemblages: a saline assemblage, and 2 groups of fresher-water species, one associated with deeper water and lower water clarity and the other associated with shallow water and higher water clarity. These assemblages exhibited intra-annual variation, with at least 5 times more biomass in late spring/mid-summer compared to early winter. This pattern was consistent across the estuary, although the difference between peak and low biomass varied by habitat type; brackish exhibited the greatest magnitude. This variation is likely due to higher variation in salinity and the species composition of this habitat. As climate change and coastal restoration impact timing and range of salinity, water depth and clarity in this region, these data can be used to help inform predictive models and management decisions.

Louisiana↗