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At least 937 records · Page 52Linked to original sources

USGS2020

Developmental ecomorphology of the epibranchial organ of the silver carp, Hypophthalmichthys molitrix

Silver carp regularly consume and digest particles of food as small as 5 μm. This ability drives their efficient consumption of phytoplankton and because they feed low on the food chain they have an important place in aquaculture worldwide. In North America, where they are considered invasive, silver carp deplete food resources for native species and in so doing occupy increased niche space. Here, we determine the ontogenetic stage and size at which silver carp are morphologically capable of primarily feeding on particles <10 μm. Ecological studies on this species have shown that there is an ontogenetic shift in diet as predominantly zooplanktivorous juveniles later switch to eating much smaller phytoplankton. The occupation of this new trophic niche presents both a metabolic and a mechanical challenge to these fish, since it is unclear how they can efficiently feed on such small particles. We hypothesize that the epibranchial organ (EBO) in silver carp is essential in aggregating these small particles of food, allowing the species to consume mass quantities of tiny particles, thus mitigating metabolic constraints. In this study, we investigate early ontogeny of the EBO in silver carp to determine when this structure achieves the requisite morphology to become functional. We find that at around 80 mm standard length (SL) the EBOs are consistently filled with food, demonstrating that this accumulating organ has become functional. This size corresponds with previous ecological data documenting important shifts in the type of food consumed. While the basic bauplan of the EBO is established very early in ontogeny (by 15 mm SL), multiple waves of histological maturation of muscle, cartilage, gill rakers and epithelium ultimately form the functional structure.

Journal of Fish Biology↗

USGS2013

Great Lakes rivermouth ecosystems: scientific synthesis and management implications

At the interface of the Great Lakes and their tributary rivers lies the rivermouths, a class of aquatic ecosystem where lake and lotic processes mix and distinct features emerge. Many rivermouths are the focal point of both human interaction with the Great Lakes and human impacts to the lakes; many cities, ports, and beaches are located in rivermouth ecosystems, and these human pressures often degrade key ecological functions that rivermouths provide. Despite their ecological uniqueness and apparent economic importance, there has been relatively little research on these ecosystems as a class relative to studies on upstream rivers or the open-lake waters. Here we present a synthesis of current knowledge about ecosystem structure and function in Great Lakes rivermouths based on studies in both Laurentian rivermouths, coastal wetlands, and marine estuarine systems. A conceptual model is presented that establishes a common semantic framework for discussing the characteristic spatial features of rivermouths. This model then is used to conceptually link ecosystem structure and function to ecological services provided by rivermouths. This synthesis helps identify the critical gaps in understanding rivermouth ecology. Specifically, additional information is needed on how rivermouths collectively influence the Great Lakes ecosystem, how human alterations influence rivermouth functions, and how ecosystem services provided by rivermouths can be managed to benefit the surrounding socioeconomic networks.

Great Lakes↗

USGS2023

Assembly of the largest squamate reference genome to date: The western fence lizard, Sceloporus occidentalis

Spiny lizards (genus Sceloporus ) have long served as important systems for studies of behavior, thermal physiology, dietary ecology, vector biology, speciation, and biogeography. The western fence lizard, Sceloporus occidentalis , is found across most of the major biogeographical regions in the western United States and northern Baja California, Mexico, inhabiting a wide range of habitats, from grassland to chaparral to open woodlands. As small ectotherms, Sceloporus lizards are particularly vulnerable to climate change, and S. occidentalis has also become an important system for studying the impacts of land use change and urbanization on small vertebrates. Here, we report a new reference genome assembly for S. occidentalis , as part of the California Conservation Genomics Project (CCGP). Consistent with the reference genomics strategy of the CCGP, we used Pacific Biosciences HiFi long reads and Hi-C chromatin-proximity sequencing technology to produce a de novo assembled genome. The assembly comprises a total of 608 scaffolds spanning 2,856 Mb, has a contig N50 of 18.9 Mb, a scaffold N50 of 98.4 Mb, and BUSCO completeness score of 98.1% based on the tetrapod gene set. This reference genome will be valuable for understanding ecological and evolutionary dynamics in S. occidentalis , the species status of the California endemic island fence lizard ( S. becki ), and the spectacular radiation of Sceloporus lizards.

California↗

USGS2018

Wanted: Future leaders for ESA

A scientific society like ESA is not just an office, nor an annual meeting, nor one or more journals, and it cannot operate without volunteer leadership. ESA is its members. It is the collective efforts of many individuals that create a vibrant organization. Members step forward in service to the society and to the community review journal articles, organize symposia and field trips at the Annual Meeting, serve on standing program committees and as Section Officers, and make strategic and financial decisions for the society as members of the Governing Board. With a small headquarters staff, much of the work accomplished by ESA rests on the shoulders of volunteer members and leaders. The combined efforts of hundreds of individuals allow ESA to develop and advance programs and maximize the society’s impact in advancing science and engaging communities. ESA is committed to being a leader in communicating ecological science among scientists and to promoting its use in our threatened world. ESA can only achieve these goals however, if its members make it happen.

Frontiers in Ecology and the Environment↗

USGS2016

Managing adaptively for multifunctionality in agricultural systems

The critical importance of agricultural systems for food security and as a dominant global landcover requires management that considers the full dimensions of system functions at appropriate scales, i.e. multifunctionality. We propose that adaptive management is the most suitable management approach for such goals, given its ability to reduce uncertainty over time and support multiple objectives within a system, for multiple actors. As such, adaptive management may be the most appropriate method for sustainably intensifying production whilst increasing the quantity and quality of ecosystem services. However, the current assessment of performance of agricultural systems doesn’t reward ecosystem service provision. Therefore, we present an overview of the ecosystem functions agricultural systems should and could provide, coupled with a revised definition for assessing the performance of agricultural systems from a multifunctional perspective that, when all satisfied, would create adaptive agricultural systems that can increase production whilst ensuring food security and the quantity and quality of ecosystem services. The outcome of this high level of performance is the capacity to respond to multiple shocks without collapse, equity and triple bottom line sustainability. Through the assessment of case studies, we find that alternatives to industrialized agricultural systems incorporate more functional goals, but that there are mixed findings as to whether these goals translate into positive measurable outcomes. We suggest that an adaptive management perspective would support the implementation of a systematic analysis of the social, ecological and economic trade-offs occurring within such systems, particularly between ecosystem services and functions, in order to provide suitable and comparable assessments. We also identify indicators to monitor performance at multiple scales in agricultural systems which can be used within an adaptive management framework to increase resilience at multiple scales.

Journal of Environmental Management↗

USGS2020

Spatial ecology of closely-related taxa: The case of the little shearwater complex in the North Atlantic Ocean

Seabirds inhabiting vast water masses provide numerous examples where opposing phenomena, such as natal and breeding philopatry vs. vagility have dug cryptic taxonomic boundaries among closely related taxa. The taxonomy of little shearwaters of the North Atlantic Ocean (Little–Audubon’s shearwater complex, Puffinus assimilis – lherminieri ) still remains unclear, and complementary information on non-breeding distributions and at-sea behaviour becomes essential to unravel divergent local adaptations to specific habitats. Using miniaturized light-level geolocators from seven study areas in the North Atlantic, we evaluate the spatial and habitat segregation, estimate the timing of their key life-cycle events and describe the at-sea behaviour of three taxa of these little shearwaters year-round to distinguish ecological patterns and specializations that could ultimately unravel potential lineage divergences. We also assess morphometric data from birds that were breeding at each study area to further discuss potential adaptations to specific habitats. Our results show that, while birds from different taxa segregated in space and habitats, they share ecological plasticity, similar annual phenology and diel foraging behaviour. These ecological inconsistencies, while defining the evolutionary stressors faced by these taxa, do not suggest the existence of three Evolutionary Significant Units. However, they confirm the recent evolutionary divergence among the three little shearwaters of the North Atlantic.

Zoological Journal of the Linnean Society↗

USGS2014

Grass carp in the Great Lakes region: establishment potential, expert perceptions, and re-evaluation of experimental evidence of ecological impact

Intentional introductions of nonindigenous fishes are increasing globally. While benefits of these introductions are easily quantified, assessments to understand the negative impacts to ecosystems are often difficult, incomplete, or absent. Grass carp (Ctenopharyngodon idella) was originally introduced to the United States as a biocontrol agent, and recent observations of wild, diploid individuals in the Great Lakes basin have spurred interest in re-evaluating its ecological risk. Here, we evaluate the ecological impact of grass carp using expert opinion and a suite of the most up-to-date analytical tools and data (ploidy assessment, eDNA surveillance, species distribution models (SDMs), and meta-analysis). The perceived ecological impact of grass carp by fisheries experts was variable, ranging from unknown to very high. Wild-caught triploid and diploid individuals occurred in multiple Great Lakes waterways, and eDNA surveillance suggests that grass carp are abundant in a major tributary of Lake Michigan. SDMs predicted suitable grass carp climate occurs in all Great Lakes. Meta-analysis showed that grass carp introductions impact both water quality and biota. Novel findings based on updated ecological impact assessment tools indicate that iterative risk assessment of introduced fishes may be warranted.

Great Lakes Basin↗

USGS2020

Gut contents from multiple morphs of lake trout (Salvelinus namaycush) at two offshore shoals in Lake Superior

Four lake trout, Salvelinus namaycush , Walbaum 1792 morphs occur in Lake Superior: lean, siscowet, humper, and redfin. Diets of lean and siscowet have been relatively well described. However, less is known about diets of humper and redfin, and overall few studies have been conducted at offshore shoals. We compared gut content data among mature (357–867 mm) sympatric lake trout morphs caught at two offshore shoals in Lake Superior, Stannard Rock and Superior Shoal, in 2013 and 2014 (total n = 416). All morphs were caught in shallow (<50 m), mid (50–100 m), and deep (>100 m) strata. Invertebrates made up a greater portion of the stomach contents than did fish for all morphs by both percent occurrence and proportional biomass, and Mysis was the primary invertebrate consumed by all morphs at both sites. Coregonus spp. and deepwater sculpin, Myoxocephalus thompsonii were the most commonly consumed fish. Humper had the highest average proportional biomass of deepwater sculpin and had no other identifiable species of fish in their guts. Biomass of fish in redfin guts was highest for Coregonus spp., followed by similar amounts of deepwater sculpin and burbot, Lota lota . Diet overlap among morphs was high, and differences in prey consumption between sites are likely related to prey availability. Additional study is needed to determine if differences in trophic ecology between humper and other morphs are sufficient to support concurrent stocking of multiple morphs, particularly in light of recent declines in native prey fishes, especially Coregonus spp., in the Laurentian Great Lakes.

Lake Superior↗

USGS2010

Resilience of Alaska’s boreal forest to climatic change

This paper assesses the resilience of Alaska’s boreal forest system to rapid climatic change. Recent warming is associated with reduced growth of dominant tree species, plant disease and insect outbreaks, warming and thawing of permafrost, drying of lakes, increased wildfire extent, increased postfire recruitment of deciduous trees, and reduced safety of hunters traveling on river ice. These changes have modified key structural features, feedbacks, and interactions in the boreal forest, including reduced effects of upland permafrost on regional hydrology, expansion of boreal forest into tundra, and amplification of climate warming because of reduced albedo (shorter winter season) and carbon release from wildfires. Other temperature-sensitive processes for which no trends have been detected include composition of plant and microbial communities, long-term landscape-scale change in carbon stocks, stream discharge, mammalian population dynamics, and river access and subsistence opportunities for rural indigenous communities. Projections of continued warming suggest that Alaska’s boreal forest will undergo significant functional and structural changes within the next few decades that are unprecedented in the last 6000 years. The impact of these social–ecological changes will depend in part on the extent of landscape reorganization between uplands and lowlands and on policies regulating subsistence opportunities for rural communities.

Alaska↗

USGS1979

Fall foods of migrant common snipe in North Dakota

Studies of foods consumed by common snipe ( Capella gallinago ) during fall migration (Sperry 1940, Erickson 1941, Choate in Tuck 1972, Tuck 1972) have shown that diets vary among habitats. More recently, Fogarty and Arnold (1977) expressed the need for more detailed information on snipe food habits and more refined knowledge of the snipe's range and adaptability to various food situations. There is a paucity of information on snipe feeding ecology in the prairie pothole region of North America where unstable and unpredictable hydrological conditions affect abundance and availability of aquatic foods. The objectives of study were to (1) identify foods consumed by common snipe during fall migration in south-central North Dakota, and (2) describe changes in diet during years with different water regimes.

North Dakota↗

USGS2016

Deriving habitat models for northern long-eared bats from historical detection data: A case study using the Fernow Experimental Forest

The listing of the northern long-eared bat ( Myotis septentrionalis ) as federally threatened under the Endangered Species Act following severe population declines from white-nose syndrome presents considerable challenges to natural resource managers. Because the northern long-eared bat is a forest habitat generalist, development of effective conservation measures will depend on appropriate understanding of its habitat relationships at individual locations. However, severely reduced population sizes make gathering data for such models difficult. As a result, historical data may be essential in development of habitat models. To date, there has been little evaluation of how effective historical bat presence data, such as data derived from mist-net captures, acoustic detection, and day-roost locations, may be in developing habitat models, nor is it clear how models created using different data sources may differ. We explored this issue by creating presence probability models for the northern long-eared bat on the Fernow Experimental Forest in the central Appalachian Mountains of West Virginia using a historical, presence-only data set. Each presence data type produced outputs that were dissimilar but that still corresponded with known traits of the northern long-eared bat or are easily explained in the context of the particular data collection protocol. However, our results also highlight potential limitations of individual data types. For example, models from mist-net capture data only showed high probability of presence along the dendritic network of riparian areas, an obvious artifact of sampling methodology. Development of ecological niche and presence models for northern long-eared bat populations could be highly valuable for resource managers going forward with this species. We caution, however, that efforts to create such models should consider the substantial limitations of models derived from historical data, and address model assumptions.

West Virginia↗

USGS2019

Let’s agree to disagree: Comparing auto-acoustic identification programs for northeastern bats

With the declines in abundance and changing distribution of white-nose syndrome–affected bat species, increased reliance on acoustic monitoring is now the new “normal.” As such, the ability to accurately identify individual bat species with acoustic identification programs has become increasingly important. We assessed rates of disagreement between the three U.S. Fish and Wildlife Service–approved acoustic identification software programs (Kaleidoscope Pro 4.2.0, Echoclass 3.1, and Bat Call Identification 2.7d) and manual visual identification using acoustic data collected during summers from 2003 to 2017 at Fort Drum, New York. We assessed the percentage of agreement between programs through pairwise comparisons on a total nightly count level, individual file level (e.g., individual echolocation pass call file), and grouped maximum likelihood estimate level (e.g., probability values that a species is misclassified as present when in fact it is absent) using preplanned contrasts, Akaike Information Criterion, and annual confusion matrices. Interprogram agreement on an individual file level was low, as measured by Cohen's Kappa (0.2–0.6). However, site-night level pairwise comparative analysis indicated that program agreement was higher (40–90%) using single season occupancy metrics. In comparing analytical outcomes of our different datasets (i.e., how comparable programs and visual identification are regarding the relationship between environmental conditions and bat activity), we determined high levels of congruency in the relative rankings of the model as well as the relative level of support for each individual model. This indicated that among individual software packages, when analyzing bat calls, there was consistent ecological inference beyond the file-by-file level at the scales used by managers. Depending on objectives, we believe our results can help users choose automated software and maximum likelihood estimate thresholds more appropriate for their needs and allow for better cross-comparison of studies using different automated acoustic software.

Journal of Fish and Wildlife Management↗

USGS1990

Encephalization quotients and life-history traits in the Sirenia

Relative brain size in the Sirenia is unusually small. Encephalization quotients are 0.27 for Florida manatees ( Trichechus manatus ) and 0.38 for dugongs ( Dugong dugon ). Estimates for Steller's sea cow ( Hydrodamalis gigas ) range from 0.12 to 0.19. These values are among the lowest known for Recent mammals, and seemingly have changed little since the Eocene. A body plan specialized for the aquatic environment does not account for low encephalization quotients; values are substantially less than predicted based on cetacean or pinniped allometry. Life-history, ecological, and behavioral traits of the Sirenia are typical of relatively large-brained species. Low quality food and a low metabolic rate, however, are characteristic of the Sirenia and other small-brained mammals. Acting through prolonged postnatal growth, selection also likely favored large body size in the Sirenia without a correlated increase in brain size.

Journal of Mammalogy↗

USGS1963

Conversations on ecology IV

The conversations on ecology have mentioned the pesticide problem, and in such discussion it is easy to lose sight of the basic philosophic view which is an undercurrent in Miss Carson's book. I should like to expand on that philosophic premise and examine some of its implications for planning vegetation management measures as well as other measures for resource development.

The Garden Journal: Journal of the New York Botani↗

USGS2022

Greater than the sum of its parts: Computationally flexible Bayesian hierarchical modeling

We propose a multistage method for making inference at all levels of a Bayesian hierarchical model (BHM) using natural data partitions to increase efficiency by allowing computations to take place in parallel form using software that is most appropriate for each data partition. The full hierarchical model is then approximated by the product of independent normal distributions for the data component of the model. In the second stage, the Bayesian maximum a posteriori (MAP) estimator is found by maximizing the approximated posterior density with respect to the parameters. If the parameters of the model can be represented as normally distributed random effects, then the second-stage optimization is equivalent to fitting a multivariate normal linear mixed model. We consider a third stage that updates the estimates of distinct parameters for each data partition based on the results of the second stage. The method is demonstrated with two ecological data sets and models, a generalized linear mixed effects model (GLMM) and an integrated population model (IPM). The multistage results were compared to estimates from models fit in single stages to the entire data set. In both cases, multistage results were very similar to a full MCMC analysis. Supplementary materials accompanying this paper appear online.

Journal of Agricultural, Biological and Environmen↗

USGS2010

North American osprey populations and contaminants: Historic and contemporary perspectives

Osprey ( Pandion haliaetus ) populations were adversely affected by DDT and perhaps other contaminants in the United States and elsewhere. Reduced productivity, eggshell thinning, and high DDE concentrations in eggs were the signs associated with declining osprey populations in the 1950s, 1960s, and 1970s. The species was one of the first studied on a large scale to bring contaminant issues into focus. Although few quantitative population data were available prior to the 1960s, many osprey populations in North America were studied during the 1960s and 1970s with much learned about basic life history and biology. This article reviews the historical and current effects of contaminants on regional osprey populations. Breeding populations in many regions of North America showed post-DDT-era (1972) population increases of varying magnitudes, with many populations now appearing to stabilize at much higher numbers than initially reported in the 1970s and 1980s. However, the magnitude of regional population increases in the United States between 1981 (first Nationwide Survey, ∼8,000 pairs), when some recovery had already occurred, 1994 (second survey, ∼14,200), and 2001 (third survey, ∼16,000–19,000), or any other years, is likely not a simple response to the release from earlier contaminant effects, but a response to multi-factorial effects. This indirect “contaminant effects” measurement comparing changes (i.e., recovery) in post-DDT-era population numbers over time is probably confounded by changing human attitudes toward birds of prey (shooting, destroying nests, etc.), changing habitats, changing fish populations, and perhaps competition from other species. The species' adaptation to newly created reservoirs and its increasing use of artificial nesting structures (power poles, nesting platforms, cell towers, channel markers, offshore duck blinds, etc.) are two important factors. The timing of the initial use of artificial nesting structures, which replaced declining numbers of suitable trees at many locations, varied regionally (much later in the western United States and Mexico). Because of the increasing use of artificial nesting structures, there may be more ospreys nesting in North America now than ever before. Now, with the impact of most legacy organic contaminants (DDT, other organochlorine [OC] pesticides, polychlorinated biphenyls [PCB], polychlorinated dibenzo- p -dioxins [PCDD], polychlorinated dibenzofurans (PCDF]) greatly reduced or eliminated, and some osprey populations showing evidence of stabilizing, the species was proposed as a Worldwide Sentinel Species for evaluating emerging contaminants. Several emerging contaminants are already being studied, such as polybrominated diphenyl ethers (PBDE) and perfluorinated acids and sulfonate compounds (PFC). The many advantages for continued contaminant investigations using the osprey include a good understanding of its biology and ecology, its known distribution and abundance, and its ability to habituate to humans and their activities, which permits nesting in some of the potentially most contaminated environments. It is a top predator in most ecosystems, and its nests are relatively easy to locate and study with little researcher impact on reproductive success.

Journal of Toxicology and Environmental Health, Pa↗

USGS2012

Tools for quantifying isotopic niche space and dietary variation at the individual and population level.

Ecologists are increasingly using stable isotope analysis to inform questions about variation in resource and habitat use from the individual to community level. In this study we investigate data sets from 2 California sea otter ( Enhydra lutris nereis ) populations to illustrate the advantages and potential pitfalls of applying various statistical and quantitative approaches to isotopic data. We have subdivided these tools, or metrics, into 3 categories: IsoSpace metrics, stable isotope mixing models, and DietSpace metrics. IsoSpace metrics are used to quantify the spatial attributes of isotopic data that are typically presented in bivariate (e.g., δ 13 C versus δ 15 N) 2-dimensional space. We review IsoSpace metrics currently in use and present a technique by which uncertainty can be included to calculate the convex hull area of consumers or prey, or both. We then apply a Bayesian-based mixing model to quantify the proportion of potential dietary sources to the diet of each sea otter population and compare this to observational foraging data. Finally, we assess individual dietary specialization by comparing a previously published technique, variance components analysis, to 2 novel DietSpace metrics that are based on mixing model output. As the use of stable isotope analysis in ecology continues to grow, the field will need a set of quantitative tools for assessing isotopic variance at the individual to community level. Along with recent advances in Bayesian-based mixing models, we hope that the IsoSpace and DietSpace metrics described here will provide another set of interpretive tools for ecologists.

Journal of Mammalogy↗

USGS1994

A bibliography of "Dreissena polymorpha in European and Russian waters: 1964-1993"

A bibliography of over 1000 papers on the biology, impacts, and control of the zebra mussel (Dreissena polymorpha) in European and Russian waters is compiled to aid scientists and managers in addressing this species of economic and ecological importance. The bibliography primarily includes publications between the early 1960s and early 1990s but does contain some earlier references not found in another extensive bibliography published in 1964. This bibliography will be a valuable tool, especially to water users and environmental scientists in North America where zebra mussels have recently invaded and become established.

Journal of Shellfish Research↗