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USGS1966

Road log for southern Santa Rita Mountains, Santa Cruz and Pima Counties, Arizona

Geologic mapping of the Mount Wrightson quadrangle has been completed recently by the U.S. Geological Survey. As a result, I am able to present a summary (table 1) of the rocks exposed and to indicate their ages and relations with each other. The Mesozoic rocks are emphasized because the local geologic record of this era is more complete in the southern part of the Santa Rita Mountains than elsewhere in southern Arizona. For example, there is evidence to indicate that about 10,000 feet of volcanics (including pillow lava), eolian sandstone, and possibly even red beds was deposited during Triassic time and that these rocks were intruded by a monzonite stock before the end of that period. It is hoped that release of the data at this time, prior to the final publication by the U.S. Geological Survey, will stimulate in the geological community of southern Arizona a timely interest in some of the complex problems of the Mesozoic tectonic history. Solutions to these problems may suggest new approaches to minerals exploration in this region.

Arizona↗

USGS2004

Mute swans and their Chesapeake Bay habitats: proceedings of a symposium

The symposium 'Mute Swans and their Chesapeake Bay Habitats,' held on June 7, 2001, provided a forum for biologists and managers to share research findings and management ideas concerning the exotic and invasive mute swan (Cygnus olar). This species has been increasing in population size and is considered by many to be a problem in regard to natural food resources in the Bay that are used by native waterfowl during the winter months. Other persons, however, feel that resource managers are attempting to create a problem to justify more killing of waterfowl by hunters. Some persons also believe that managers should focus on the larger issues causing the decline of native food resources, such as the unabated human population increase in the Bay watershed and in the immediate coastal areas of the Bay. The symposium, sponsored by the Wildfowl Trust of North America and the U.S. Geological Survey, provided the atmosphere for presentation of mute swan data and opinions in a collegial setting where discussion was welcomed and was often informative and enthusiastic. An interesting historic review of the swan in regard to the history of mankind was presented, followed by a discussion on the positive and negative effects of invasive species. Biologists from different parts of the continent discussed the population status of the species in several states in the east and in the Great Lakes area. Data on the food habits of this species were presented in regard to submerged aquatic vegetation, and an interesting discussion on the role that the food habits of Canada geese in regard to native vegetation was presented. Findings and recommendations of the Mute Swan Task Force were presented. Finally, a representative of the Friends of Animals gave a thought-provoking presentation in defense of the mute swan. The presentations, in general, provided the necessary information and recommendations to allow managers to proceed with management of this controversial species with new and valuable perspectives.

Maryland, Virginia↗

USGS1986

ESTIMATION OF URBAN STORM-RUNOFF LOADS.

The United States was divided into three regions, on the basis of mean annual rainfall, to decrease the variability in storm-runoff constituent loads and to improve regression relations with basin and climatic characteristics. Multiple-regression analyses, in progress, are being refined to determine the best regression models for each of the storm-runoff constituent loads in each of the three regions. These techniques, when finalized, can be used to estimate storm-runoff constituent loads for gaged and ungaged urban watersheds. The preliminary standard errors of estimate for five constituents examined to date ranged from 54 to 223 percent, and the coefficients of determination (r**2) ranged from 0. 39 to 0. 94. Total storm rainfall and total contributing drainage area appear to be the most significant independent variables in the regression models. This paper is a progress report on preliminary results of estimating storm-runoff constituent loads for ungaged watersheds.

Conference Paper↗

USGS2014

Landbird trends in national parks of the North Coast and Cascades Network, 2005-12

National parks in the North Coast and Cascades Network (NCCN) can fulfill vital roles as refuges for bird species dependent on late-successional forest conditions and as reference sites for assessing the effects of land-use and land-cover changes on bird populations throughout the larger Pacific Northwest region. Additionally, long-term monitoring of landbirds throughout the NCCN provides information that can inform decisions about important management issues in the parks, including visitor impacts, fire management, and the effects of introduced species. In 2005, the NCCN began implementing a network-wide Landbird Monitoring Project as part of the NPS Inventory and Monitoring Program. In this report, we discuss 8-year trends (2005–12) of bird populations in the NCCN, based on a sampling framework of point counts established in three large wilderness parks (Mount Rainier, North Cascades, and Olympic National Parks), 7-year trends at Lewis and Clark National Historical Park (sampled in 2006, 2008, 2010, and 2012), and 5-year trends at San Juan Islands National Historical Park (sampled in 2007, 2009, and 2011). Our analysis encompasses a fairly short time span for this long-term monitoring program. The first 2 years of the time series (2005 and 2006) were implemented as part of a limited pilot study that included only a small subset of the transects. The subsequent 6 years (2007–12) represent just a single cycle through 5 years of alternating panels of transects in the large parks, with the first of five alternating panels revisited for the first time in 2012. Of 204 transects that comprise the six sampling panels in the large parks, only 68 (one-third) have thus been eligible for revisit surveys (34 during every year after 2005, and an additional 34 only in 2012) and can contribute to our current trend estimates. We therefore initiated the current analysis with a primary goal of testing our analytical procedures rather than detecting trends that might be strong enough to drive conservation or management decisions in the parks or elsewhere. We expect that aggregated trend detection results may change substantially over the next several years, as the number of transects with revisit histories triples and the spatial dispersion of transects contributing to trend estimates also improves greatly. In the meantime, caution should be exercised in interpreting the importance of trends, as individual years can have very large influences on the direction and magnitude of trends in a time series of such limited duration (and limited numbers of repeat visits at the small parks). Nevertheless, we estimated trends for 43 species at Mount Rainier National Park, 53 species at North Cascades National Park Complex, and 41 species at Olympic National Park. Of 137 park-species combinations (including combined-park analyses), we found 16 significant decreases (12 percent) and five significant increases (4 percent). We identify several limitations of the current analytical framework for trend assessment but suggest that the overall sampling design is strong and amenable to analysis by more recently developed model-based methods. These could provide a more flexible framework for examining trends and other population parameters of interest, as well as testing hypotheses that relate the distribution and abundance of species to environmental covariates. A model-based approach would allow for modeling various components of the detection process and analyzing observations (detection process), population state (occupancy, population size, density), and change (trend, local extinction and colonization rates turnover) simultaneously. Finally, we also evaluate operational aspects of NCCN Landbird Monitoring Project, and conclude that our robust, multi-party partnership is successfully implementing the project as it was envisioned.

British Columbia;Oregon;Washington↗

USGS1980

Paleozoic and Mesozoic deformations in the central Sierra Nevada, California

Analysis of structural and stratigraphic data indicates that several periods of regional deformation, consisting of combined folding, faulting, cataclasis, and regional metamorphism, occurred throughout the central Sierra Nevada during Paleozoic and Mesozoic time. The oldest regional deformation occurred alono northward trends during the Devonian and Mississippian periods in most roof pendants containing lower Paleozoic metasedimentary rocks at the center and along the crest of the range. This deformation is expressed in some roof pendants by an angular unconformity separating older thrice-deformed from younger twice-deformed Paleozoic metasedimentary rocks. The first Mesozoic deformation, which consisted of uplift and erosion and was accompanied by the onset of Andean-type volcanism during the Permian and Triassic, is expressed by an angular unconformity in several roof pendants from the Saddlebag Lake to the Mount Morrison areas. This unconformity is defined by Permian and Triassic andesitic to rhyolitic metavolcanic rocks unconformably overlying more intensely deformed Pennsylvanian, Permian(?), and older metasedimentary rocks. A later regional deformation occurred during the Triassic along N. 20?_30? W. trends in Permian and Triassic metavolcanic rocks of the Saddlebag Lake and Mount Dana roof pendants, in upper Paleozoic rocks of the Pine Creek roof pendant, and in the Calaveras Formation of the western metamorphic belt; the roof pendants are crosscut by Upper Triassic granitic rocks of the Lee Vining intrusive epoch. A still later period of Early and Middle Jurassic regional deformation occurred along N. 30?-60? E. trends in upper Paleozoic rocks of the Calaveras Formation of the western metamorphic belt. A further period of deformation was the Late Jurassic Nevadan orogeny, which occurred along N. 20?_40? W. trends in Upper Jurassic rocks of the western metamorphic belt that are crosscut by Upper Jurassic granitic rocks of the Yosemite intrusive epoch. Structures of similar age occur in intensely deformed oceanic-lithospheric and syntectonic plutonic rocks of the lower Kings River area, in Jurassic metavolcanic rocks of the Ritter Range roof pendant, and in Triassic metasedimentary rocks of the Mineral King roof pendant. The final Mesozoic deformation occurred along N. 50?-80? W. trends in both high-country roof pendants and the lower Kings River area; structures of this generation are crosscut by relatively undeformed Upper Cretaceous granitic rocks of the Cathedral Range intrusive epoch.

Professional Paper↗

USGS2019

Severity and extent of alterations to natural streamflow regimes based on hydrologic metrics in the conterminous United States, 1980–2014

Alteration of the natural streamflow regime by land and water management, such as land-cover change and dams, is associated with aquatic ecosystem degradation. The severity and geographic extent of streamflow alteration at regional and national scales, however, remain largely unquantified. The primary goal of this study is to characterize the severity and extent of alterations to natural streamflow regimes for 1980–2014 based on hydrologic metrics at 3,355 U.S. Geological Survey streamgages in the conterminous United States. Twelve hydrologic metrics with known relevance to aquatic ecosystem health were used to characterize the streamflow regime. Alterations to the 12 hydrologic metrics were quantified by taking ratios of the metrics calculated from observed daily streamflow records divided by the same metrics predicted for natural conditions by random forest statistical models. Some level of streamflow alteration (diminishment or inflation of hydrologic metrics) compared to natural conditions was indicated at about 80 percent of the assessed streamgages across the conterminous United States. The severity of alteration differed among ecoregions because of differences in dominant land and water management practices. Finally, when compared over the period 1980–2014, climate variability generally played a minor role in the alteration of streamflows across the United States when compared to the effects of land and water management.

Conterminous United States↗

USGS2017

A simulation method for combining hydrodynamic data and acoustic tag tracks to predict the entrainment of juvenile salmonids onto the Yolo Bypass under future engineering scenarios

During water year 2016 the U.S. Geological Survey California Water Science Center (USGS) collaborated with the California Department of Water Resources (DWR) to conduct a joint hydrodynamic and fisheries study to acquire data that could be used to evaluate the effects of proposed modifications to the Fremont Weir on outmigrating juvenile Chinook salmon. During this study the USGS surgically implanted acoustic tags in juvenile late fall run Chinook salmon from the Coleman National Fish Hatchery, released the acoustically tagged juvenile salmon into the Sacramento River upstream of the Fremont Weir, and tracked their movements as they emigrated past the western end of the Fremont Weir. The USGS analyzed tracking data from the acoustically tagged juvenile salmon along with detailed hydrodynamic data collected in the Sacramento River during the winter/spring of water year 2016 in the vicinity of the western end of the Fremont Weir to assess the potential for enhancing the entrainment of Sacramento River Chinook salmon onto the Yolo Bypass under six different Fremont Weir modification scenarios. Each modification scenario consists of a notch or multiple notches in the Fremont Weir which are designed to divert a portion of the Sacramento River onto the Yolo Bypass when the Sacramento River is below the crest of the Fremont Weir. The primary goal of this entrainment analysis was to investigate how the location of the notch or notches in each scenario affected the entrainment of juvenile Chinook salmon onto the Yolo Bypass, and to predict the notch location or locations that would result in maximum entrainment under each modification scenario. Stumpner et al.’s (in review) analysis of hydraulic data collected during the 2016 study period showed that backwater effects in the Sacramento River created significant variability in the relationship between Sacramento River stage and the proportion of the Sacramento River flow that we expect to be diverted onto the Yolo Bypass under the modification scenarios. Because of this variability, accurately evaluating the entrainment potential of possible notch locations for each scenario required combining historic abundance data for juvenile Sacramento River Chinook salmon with historic hydraulic data for the Sacramento River in the vicinity of the Fremont Weir, so that the entrainment estimates would reflect the covariance between Sacramento River stage, Sacramento River discharge, and juvenile salmon abundance within the historic record. We used a Monte Carlo simulation framework to combine the high resolution hydrodynamic data and acoustic tag track data collected in 2016 with historic juvenile salmon abundance, Sacramento River stage, and Sacramento River discharge data from a period spanning water years 1996-2010 to assess the entrainment potential of different weir modification scenarios under historic conditions. The scenarios we simulated consisted of four single notch configurations, and two multiple notch configurations in the vicinity of the western end of the Fremont Weir. For each notch configuration the 15-water-year entrainment simulation was repeated for 63 possible notch locations in the vicinity of the western end of the Fremont Weir. This approach allowed us to assess the effect of notch location on the entrainment of juvenile salmonids onto the Yolo Bypass for each of the six notch configurations that we evaluated. The entrainment simulations showed that the location of each notch configuration had a major impact on the entrainment for each scenario; the predicted entrainment of some scenarios varied by as much as 400% based on where the notch (or notches) was (were) located in the study area. All of the single notch scenarios performed best when they were located within a 330 ft (100 meter) long section of the Sacramento River bank adjacent to the western terminus of the Fremont Weir (Table 1). Both of the multiple notch scenarios performed best when their upstream notches were located about 660 ft (200 meters) upstream of the western terminus of the Fremont Weir (Table 1). The results of the entrainment simulations indicated that for each notch configuration the same notch location produced near-maximum entrainment regardless of run abundance timing; this result suggests that there are areas within the study are where a notch (or notches) can be sited to achieve maximum entrainment for all runs (barring significant behavioral or physiological differences between runs). In addition, the simulation results indicate that for each notch configuration the same location is expected to produce nearmaximum entrainment for both wet water years and dry water years. Based on the results of the entrainment simulation we make three general recommendations for strategies to improve the entrainment potential of a notch in the Fremont Weir: 1) Comparisons between the maximum entrainment potential for each scenario suggested that total entrainment of winter run, spring run, and fall run salmon onto the Yolo Bypass can be increased by increasing the amount of water entering a notch when the Sacramento River stage is between 19 ft and 22 ft NAVD88; this could be accomplished by lowering notch invert elevations or by adding a control section to the Sacramento River to raise stage for a given discharge. 2) The relationship between Sacramento River stage and entrainment for each scenario indicated that entrainment efficiency for each scenario declined significantly once Sacramento River stage exceeded bankfull (approximately 28.5 ft NAVD88). This effect was likely due to inundation of the floodplain between the Sacramento River and the Fremont Weir; Stumpner et. al (In Review) have documented a reduction in the strength of the secondary circulation and centralization of the downwelling zone in the Sacramento River when this floodplain is inundated. Therefore, increasing the height of the river right bank of the Sacramento River to coincide with the height of the Fremont Weir is recommended to increase entrainment at higher stages. 3) Bathymetric features upstream of notch openings appeared to have a major impact on the entrainment potential of the simulated notches. For this reason we recommend taking care to avoid siting notches immediately downstream of bank features that alter the sidewall boundary layer, and we expect that smoothing the bank bathymetry upstream of a notch will enhance entrainment. Finally, we caution that the entrainment simulation was based on the behavior of large hatchery smolts, so it is likely that our results will be sensitive to any differences in behavior and physiology between these hatchery surrogates and naturally migrating juvenile salmon.

California↗

USGS2004

Surface-Water and Ground-Water Interactions in the Central Everglades, Florida

Recharge and discharge are hydrological processes that cause Everglades surface water to be exchanged for subsurface water in the peat soil and the underlying sand and limestone aquifer. These interactions are thought to be important to water budgets, water quality, and ecology in the Everglades. Nonetheless, relatively few studies of surface water and ground water interactions have been conducted in the Everglades, especially in its vast interior areas. This report is a product of a cooperative investigation conducted by the USGS and the South Florida Water Management District (SFWMD) aimed at developing and testing techniques that would provide reliable estimates of recharge and discharge in interior areas of WCA-2A (Water Conservation Area 2A) and several other sites in the central Everglades. The new techniques quantified flow from surface water to the subsurface (recharge) and the opposite (discharge) using (1) Darcy-flux calculations based on measured vertical gradients in hydraulic head and hydraulic conductivity of peat; (2) modeling transport through peat and decay of the naturally occurring isotopes 224 Ra and 223 Ra (with half-lives of 4 and 11 days, respectively); and (3) modeling transport and decay of naturally occurring and "bomb-pulse" tritium (half-life of 12.4 years) in ground water. Advantages and disadvantages of each method for quantifying recharge and discharge were compared. In addition, spatial and temporal variability of recharge and discharge were evaluated and controlling factors identified. A final goal was to develop appropriately simplified (that is, time averaged) expressions of the results that will be useful in addressing a broad range of hydrological and ecological problems in the Everglades. Results were compared with existing information about water budgets from the South Florida Water Management Model (SFWMM), a principal tool used by the South Florida Water Management District to plan many of the hydrological aspects of the Everglades restoration.

Florida↗

USGS2001

Widespread potential for microbial MTBE degradation in surface-water sediments

Microorganisms indigenous to stream and lake bed sediments, collected from 11 sites throughout the United States, demonstrated significant mineralization of the fuel oxygenate, methyl-tert-butyl ether (MTBE). Mineralization of [U-14C]MTBE to 14CO2 ranged from 15 to 66% over 50 days and did not differ significantly between sediments collected from MTBE contaminated sites and from sites with no history of MTBE exposure. This result suggests that even the microbial communities indigenous to newly contaminated surface water systems will exhibit some innate ability to attenuate MTBE under aerobic conditions. The magnitude of MTBE mineralization was related to the sediment grain size distribution. A pronounced, inverse correlation (p < 0.001; r2 = 0.73) was observed between the final recovery of 14CO2 and the percentage content of silt and clay sized grains (grain diameter < 0.125 mm). The results of this study indicate that the microorganisms that inhabit the bed sediments of streams and lakes can degrade MTBE efficiently and that this capability is widespread in the environment. Thus aerobic bed sediment microbial processes may provide a significant environmental sink for MTBE in surface water systems throughout the United States and may contribute to the reported transience of MTBE in some surface waters.

Environmental Science & Technology↗

USGS2016

Bedrock morphology and structure, upper Santa Cruz Basin, south-central Arizona, with transient electromagnetic survey data

The upper Santa Cruz Basin is an important groundwater basin containing the regional aquifer for the city of Nogales, Arizona. This report provides data and interpretations of data aimed at better understanding the bedrock morphology and structure of the upper Santa Cruz Basin study area which encompasses the Rio Rico and Nogales 1:24,000-scale U.S. Geological Survey quadrangles. Data used in this report include the Arizona Aeromagnetic and Gravity Maps and Data referred to here as the 1996 Patagonia Aeromagnetic survey, Bouguer gravity anomaly data, and conductivity-depth transforms (CDTs) from the 1998 Santa Cruz transient electromagnetic survey (whose data are included in appendixes 1 and 2 of this report). Analyses based on magnetic gradients worked well to identify the range-front faults along the Mt. Benedict horst block, the location of possibly fault-controlled canyons to the west of Mt. Benedict, the edges of buried lava flows, and numerous other concealed faults and contacts. Applying the 1996 Patagonia aeromagnetic survey data using the horizontal gradient method produced results that were most closely correlated with the observed geology. The 1996 Patagonia aeromagnetic survey was used to estimate depth to bedrock in the upper Santa Cruz Basin study area. Three different depth estimation methods were applied to the data: Euler deconvolution, horizontal gradient magnitude, and analytic signal. The final depth to bedrock map was produced by choosing the maximum depth from each of the three methods at a given location and combining all maximum depths. In locations of rocks with a known reversed natural remanent magnetic field, gravity based depth estimates from Gettings and Houser (1997) were used. The depth to bedrock map was supported by modeling aeromagnetic anomaly data along six profiles. These cross sectional models demonstrated that by using the depth to bedrock map generated in this study, known and concealed faults, measured and estimated magnetic susceptibilities of rocks found in the study area, and estimated natural remanent magnetic intensities and directions, reasonable geologic models can be built. This indicates that the depth to bedrock map is reason-able and geologically possible. Finally, CDTs derived from the 1998 Santa Cruz Basin transient electromagnetic survey were used to help identify basin structure and some physical properties of the basin fill in the study area. The CDTs also helped to confirm depth to bedrock estimates in the Santa Cruz Basin, in particular a region of elevated bedrock in the area of Potrero Canyon, and a deep basin in the location of the Arizona State Highway 82 microbasin. The CDTs identified many concealed faults in the study area and possibly indicate deep water-saturated clay-rich sediments in the west-central portion of the study area. These sediments grade to more sand-rich saturated sediments to the south with relatively thick, possibly unsaturated, sediments at the surface. Also, the CDTs may indicate deep saturated clay-rich sediments in the Highway 82 microbasin and in the Mount Benedict horst block from Proto Canyon south to the international border.

Arizona↗

USGS2024

Pesticide concentrations of surface water and suspended sediment in Yolo By-Pass and Cache Slough Complex, California, 2019–2021

Managed flow pulses in the north Sacramento-San Joaquin Delta are an adaptive management tool used in efforts to enhance food availability in delta smelt ( Hypomesus transpacificus ) habitat as part of the North Delta Food Subsidies Action. The California Department of Water Resources (DWR) monitors non-managed seasonal and local flow pulses and managed flow pulses from agricultural drainage or main stem Sacramento River water redirected through Yolo By-Pass. Augmented flow pulses are hypothesized to improve net positive flow during summer and fall in Yolo By-Pass and enhance plankton availability in delta smelt habitat in Cache Slough complex. However, flow pulses may also result in unintended negative effects of increased pesticides that are transported through Yolo By-Pass. Here, we evaluate pesticides in surface water and suspended sediment correlated with flow pulses in Yolo By-Pass during the 2019–21 calendar years. Surface-water and suspended-sediment samples were collected by DWR personnel. Water samples were analyzed at the U.S. Geological Survey Organic Chemistry Research Laboratory in Sacramento, California, for a suite of as many as 178 current-use pesticides and pesticide degradates using gas chromatography with mass spectrometry (GC/MS), gas chromatography with tandem mass spectrometry, and liquid chromatography with tandem mass spectrometry. Suspended sediments filtered from water samples were analyzed for a suite of as many as 173 current-use pesticides and pesticide degradates. There were 52 different current-use pesticides and pesticide degradates detected in water samples collected throughout the study. Concentrations ranged from below method detection limits to 4,070 nanograms per liter. Five different compounds in water samples were detected with concentrations above U.S. Environmental Protection Agency aquatic life benchmarks. In suspended-sediment samples collected throughout the study, eight different current-use pesticides and pesticide degradates were detected. Total pesticide concentrations were highest at surface-water sites in the northern end of Yolo By-Pass and decreased farther downstream during the same sampling events. Total pesticide concentrations generally were higher for most surface-water sites immediately before or during the managed flow pulse in 2019 versus after the flow pulse. Finally, mean total pesticide concentrations for each surface-water site generally were higher during all of 2019 than 2021, regardless of sampling period.

California↗

USGS2011

Quality assurance and quality control of geochemical data—A primer for the research scientist

Geochemistry is a constantly expanding science. More and more, scientists are employing geochemical tools to help answer questions about the Earth and earth system processes. Scientists may assume that the responsibility of examining and assessing the quality of the geochemical data they generate is not theirs but rather that of the analytical laboratories to which their samples have been submitted. This assumption may be partially based on knowledge about internal and external quality assurance and quality control (QA/QC) programs in which analytical laboratories typically participate. Or there may be a perceived lack of time or resources to adequately examine data quality. Regardless of the reason, the lack of QA/QC protocols can lead to the generation and publication of erroneous data. Because the interpretations drawn from the data are primary products to U.S. Geological Survey (USGS) stakeholders, the consequences of publishing erroneous results can be significant. The principal investigator of a scientific study ultimately is responsible for the quality and interpretation of the project's findings, and thus must also play a role in the understanding, implementation, and presentation of QA/QC information about the data. Although occasionally ignored, QA/QC protocols apply not only to procedures in the laboratory but also in the initial planning of a research study and throughout the life of the project. Many of the tenets of developing a sound QA/QC program or protocols also parallel the core concepts of developing a good study: What is the main objective of the study? Will the methods selected provide data of enough resolution to answer the hypothesis? How should samples be collected? Are there known or unknown artifacts or contamination sources in the sampling and analysis methods? Assessing data quality requires communication between the scientists responsible for designing the study and those collecting samples, analyzing samples, treating data, and interpreting results. This primer has been developed to provide basic information and guidance about developing QA/QC protocols for geochemical studies. It is not intended to be a comprehensive guide but rather an introduction to key concepts tied to a list of relevant references for further reading. The guidelines are presented in stepwise order beginning with presampling considerations and continuing through final data interpretation. The goal of this primer is to outline basic QA/QC practices that scientists can use before, during, and after chemical analysis to ensure the validity of the data they collect with the goal of providing defendable results and conclusions.

Open-File Report↗

USGS1997

Preliminary paleontologic report on cores 19A and 19B, from Russell Bank, Everglades National Park, Florida Bay

The fauna and flora preserved in two cores, 19A and 19B, from the south side of Russell Bank (N 25 03.831', W 80 37.486') in north-central Florida Bay, Everglades National Park, Florida, record a history of environmental change over the last century. The benthic foraminifera and molluscs indicate fluctuating salinities with increasing average salinity upcore in core 19B. Shifts from low salinity (12-15 ppt) to higher average salinity (30 ppt) occurred at 70-66 cm and 24-18 cm in core 19B (approximately 1937-1940 and 1975-1980). The inverse, shifts from periods of higher average salinity to periods of lower salinity, occurred at 140 cm, 90 cm, and 42 cm (approximately 1880, 1921, and 1960). Significant changes in the molluscan fauna indicative of specific substrate types occur at 88 cm, 68 cm, and 22 cm. The lower portion of the core is dominated by a mixture of sediment and grass dwellers, the middle portion by sediment dwellers, and the upper portion of the core by grass and finally grass and algae dwellers. Changes occur in the floral assemblages in core 19A, but the significance of these changes is unclear. Three subtle shifts occur in the pollen assemblages indicating the onshore vegetation was responding to some environmental factor. Two peaks in dinocyst abundance occur in core 19A, but the composition of dinocyst assemblages remains relatively stable throughout the core. Correspondence between changes in salinity and onshore vegetation changes is consistent with results from previous cores. The pattern of increased salinity upcore is consistent with patterns seen in core T24 from the mouth of Taylor Creek and in core 6A from Bob Allen mudbank.

Florida↗

USGS2010

Estimation of magnitude and frequency of floods in urban basins in Missouri

Streamgage flood-frequency analyses were done for 35 streamgages on urban streams in and adjacent to Missouri for estimation of the magnitude and frequency of floods in urban areas of Missouri. A log-Pearson Type-III distribution was fitted to the annual series of peak flow data retrieved from the U.S. Geological Survey National Water Information System. For this report, the flood frequency estimates are expressed in terms of percent annual exceedance probabilities of 50, 20, 10, 4, 2, 1, and 0.2. Of the 35 streamgages, 30 are located in Missouri. The remaining five non-Missouri streamgages were added to the dataset to improve the range and applicability of the regression analyses from the streamgage frequency analyses. Ordinary least-squares was used to determine the best set of independent variables for the regression equations. Basin characteristics selected for independent variables into the ordinary least-squares regression analyses were based on theoretical relation to flood flows, literature review of possible basin characteristics, and the ability to measure the basin characteristics using digital datasets and geographic information system technology. Results of the ordinary least-squares were evaluated on the basis of Mallow's Cp statistic, the adjusted coefficient of determination, and the statistical significance of the independent variables. The independent variables of drainage area and percent impervious area were determined to be statistically significant and readily determined from existing digital datasets. The drainage area variable was computed using the best elevation data available, either from a statewide 10-meter grid or high-resolution elevation data from urban areas. The impervious area variable was computed from the National Land Cover Dataset 2001 impervious area dataset. The National Land Cover Dataset 2001 impervious area data for each basin was compared to historical imagery and 7.5-minute topographic maps to verify the national dataset represented the urbanization of the basin at the time streamgage data were collected. Eight streamgages had less urbanization during the period of time streamflow data were collected than was shown on the 2001 dataset. The impervious area values for these eight urban basins were adjusted downward as much as 23 percent to account for the additional urbanization since the streamflow data were collected. Weighted least-squares regression techniques were used to determine the final regression equations for the statewide urban flood-frequency equations. Weighted least-squares techniques improve regression equations by adjusting for different and varying lengths in streamflow records. The final flood-frequency equations for the 50-, 20-, 10-, 4-, 2-, 1-, and 0.2-percent annual exceedance probability floods for Missouri provide a technique for estimating peak flows on urban streams at gaged and ungaged sites. The applicability of the equations is limited by the range in basin characteristics used to develop the regression equations. The range in drainage area is 0.28 to 189 square miles; range in impervious area is 2.3 to 46.0 percent. Seven of the 35 selected streamgages were used to compare the results of the existing rural and urban equations to the urban equations presented in this report for the 1-percent annual exceedance probability. Results of the comparison indicate that the estimated peak flows for the urban equation in this report ranged from 3 to 52 percent higher than the results from the rural equations. Comparing the estimated urban peak flows from this report to the existing urban equation developed in 1986 indicated the range was 255 percent lower to 10 percent higher. The overall comparison between the current (2010) and 1986 urban equations indicates a reduction in estimated peak flow values for the 1-percent annual exceedance probability flood.

Missouri↗

USGS1985

Geology of the Precambrian rocks of the Jabal Habashi Quadrangle, sheet 26F, Kingdom of Saudi Arabia

The Jabal Habashi quadrangle contains formations of Lower Paleozoic and Cenozoic age, unconformably overlying part of the Precambrian Arabian Shield. The Precambrian formations include metamorphosed and strongly deformed volcanic and volcaniclastic rocks and plutons of calc-alkalic, mafic to intermediate composition, dated at about 645 Ma. These are unconformably overlain by the Maraghan formation of the Murdama group, composed of sandstone and siltstone deposited in a vast sedimentary basin present in the region between about 640 to 620 Ma. On the northwestern margin of this large basin, a smaller, fault-controlled basin was filled by the Hibshi formation, a sequence of conglomerate, sandstones, tuffs and minor lava flows, which dates from 632 Ma. Other volcanic rocks from this period probably accumulated around caldera-like volcanoes. The deposition of the Maraghan and Hibshi formations was interrupted by moderate deformation and metamorphism. About 617 Ma ago, the region was intruded by many granodiorite, granite and subordinate gabbro, diorite and peralkaline granite plutons. Gold-bearing quartz veins formed as a result of this intrusive event. A gap in the geologic record of nearly 40 Ma followed, ended by the emplacement of more evolved syenogranite and alkali-feldspar granite plutons. Hydrothermal alteration of one of these granites led to the formation of tin greisen; other granites contain anomalous amounts of rare-earth elements. The stable rock mass created by these geologic processes was extensively eroded at the end of the Precambrian, and was subsequently covered by flat-lying Lower Paleozoic clastic rocks, the Saq Sandstone of Cambrian (?) to early Ordovician age, and the Tabuk Formation, largely siltstone and claystone, of early Ordovician to early Silurian age. Another major gap in the record, extending from the early Paleozoic to late Cenozoic, ended by the extrusion of basaltic lava flows and cinder cones in the northern part of the quadrangle, about 1.8 Ma ago. The volcanic activity, preceded by tilting of the region and the stripping back of the Paleozoic rocks to expose the Precambrian again, was linked to rifting in the Arabian Shield and the opening of the Red Sea. The final event in the quadrangle was the onset of the present-day type of climate and erosion pattern, leading to the development of drainage channels partly filled by sand and small sabkhah deposits, and surfaces covered by recently cemented gravels.

Open-File Report↗

USGS2019

Improving eDNA yield and inhibitor reduction through increased water volumes and multi-filter isolation techniques

To inform management and conservation decisions, environmental DNA (eDNA) methods are used to detect genetic material shed into the water by imperiled and invasive species. Methodological enhancements are needed to reduce filter clogging, PCR inhibition, and false-negative detections when eDNA is at low concentrations. In the first of three simple experiments, we sought to ameliorate filter clogging from particulates and organic material through a scaled-up, multi-filter protocol. We combined four filters in a 5 mL Phenol-Chloroform-Isoamyl (PCI) procedure to allow for larger volumes of water (~1 L) to be filtered rapidly. Increasing the filtered water volume by four times resulted in 4.4X the yield of target DNA. Next, inhibition from organic material can reduce or block eDNA detections in PCR-based assays. To remove inhibitory compounds retained during eDNA isolation, we tested three methods to chemically strip inhibitors from eDNA molecules. The use of CTAB as a short-term (5–8 day) storage buffer, followed by a PCI isolation, resulted in the highest eDNA yields. Finally, as opposed to a linear relationship among increasing concentrations of filtered genomic eDNA, we observed a sharp change between the lower (70–280 ng) and higher (420–560 ng) amounts. This may be important for effectively precipitating eDNA during protocol testing.

Scientific Reports↗

USGS2020

Divergent genes encoding the putative receptors for growth hormone and prolactin in sea lamprey display distinct patterns of expression

Growth hormone receptor (GHR) and prolactin receptor (PRLR) in jawed vertebrates were thought to arise after the divergence of gnathostomes from a basal vertebrate. In this study we have identified two genes encoding putative GHR and PRLR in sea lamprey (Petromyzon marinus) and Arctic lamprey (Lethenteron camtschaticum), extant members of one of the oldest vertebrate groups, agnathans. Phylogenetic analysis revealed that lamprey GHR and PRLR cluster at the base of gnathostome GHR and PRLR clades, respectively. This indicates that distinct GHR and PRLR arose prior to the emergence of the lamprey branch of agnathans. In the sea lamprey, GHR and PRLR displayed a differential but overlapping pattern of expression; GHR had high expression in liver and heart tissues, whereas PRLR was expressed highly in the brain and moderately in osmoregulatory tissues. Branchial PRLR mRNA levels were significantly elevated by stage 5 of metamorphosis and remained elevated through stage 7, whereas levels of GHR mRNA were only elevated in the final stage (7). Branchial expression of GHR increased following seawater (SW) exposure of juveniles, but expression of PRLR was not significantly altered. The results indicate that GHR and PRLR may both participate in metamorphosis and that GHR may mediate SW acclimation.

Scientific Reports↗

USGS2004

User's manual for the national water information system of the U.S. Geological Survey: Ground-water site-inventory system

The Ground-Water Site-Inventory (GWSI) System is a ground-water data storage and retrieval system that is part of the National Water Information System (NWIS) developed by the U.S. Geological Survey (USGS). The NWIS is a distributed water database in which data can be processed over a network of workstations and file servers at USGS offices throughout the United States. This system comprises the GWSI, the Automated Data Processing System (ADAPS), the Water-Quality System (QWDATA), and the Site-Specific Water-Use Data System (SWUDS). The GWSI System provides for entering new sites and updating existing sites within the local database. In addition, the GWSI provides for retrieving and displaying ground-water and sitefile data stored in the local database. Finally, the GWSI provides for routine maintenance of the local and national data records. This manual contains instructions for users of the GWSI and discusses the general operating procedures for the programs found within the GWSI Main Menu.

Open-File Report↗