SEARCH · Search USGS

Results for “Ecological Complexity”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

SourceResearch connectionFrom yearThrough year

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 937 records · Page 52Linked to original sources

USGS2021

A combined microbial and ecosystem metric of carbon retention efficiency explains land cover-dependent soil microbial biodiversity–ecosystem function relationships

While soil organic carbon (C) is the foundation of productive and healthy ecosystems, the impact of the ecology of microorganisms on C-cycling remains unknown. We manipulated the diversity, applied here as species richness, of the microbial community present in similar soils on two contrasting land-covers—an adjacent pasture and forest—and observed the transformations of plant detritus and soil organic matter (SOM) using stable isotope ( 13 C) tracing coupled with a novel nuclear magnetic resonance (NMR) experiment. The amount of detritus-C degraded was not affected by the microbial diversity (p > 0.05), however the fate of detritus- and SOM-C across the diversity gradient was complex and land cover-dependent. For example, in the pasture soil, higher diversity led to lower CO 2 production (p = 0.001), a trend driven solely by SOM-C mineralization. There was no relationship between diversity and detritus-C mineralization or production of new mineral-associations after one year (p > 0.05). In contrast, in the forest soil higher diversity resulted in increased detritus-C (p = 0.01) and SOM-C (p = 0.0008) mineralization and decreased mineral-associated organic matter formation (p = 0.02). In both land cover types, retention efficiency—a measure that integrates both microbial physiology and the ability of the ecosystem to retain C—explained C loss and transformation trends. Overall, this demonstrates that the trajectory of C gained and lost is altered by land management-induced changes to microbial communities, soil structure, and chemical characteristics underlying SOM persistence.

Biogeochemistry Letters↗

USGS2007

Science Review for the Scott Bar Salamander (Plethodon asupak) and the Siskiyou Mountains Salamander (P. stormi): Biology, Taxonomy, Habitat, and Detection Probabilities/Occupancy

The Plethodon elongatus Complex in the Klamath-Siskiyou Ecoregion of southern Oregon and northern California includes three species: the Del Norte salamander, Plethodon elongatus; the Siskiyou Mountains salamander, P. stormi; and the Scott Bar salamander, P. asupak. This review aims to summarize the current literature and information available on select topics for P. stormi and P. asupak. These are both terrestrial salamanders belonging to the Family Plethodontidae, which contains more species and has a wider geographic distribution than any other family of salamanders (Wake 1966, 2006; Pough 1989). The genera of this family have greatly diversified ecologically across North America, Central America, northern South America, Sardinia, southeastern France and northwestern Italy, and have recently been discovered on the Korean peninsula (Min et al. 2005). The genus Plethodon is found exclusively in North America and is split into three distinct clades, based upon morphology and phylogenetics (Highton and Larson 1979): eastern small Plethodon, eastern large Plethodon, and the western Plethodon. The western Plethodon are the greatest representation of Plethodontidae in the Pacific Northwest, with 8 species. The two species with the most restricted ranges of these regional congeners are the Siskiyou Mountains and Scott Bar salamanders. These salamanders occupy the interior of the Klamath-Siskiyou Ecoregion which straddles the California and Oregon state lines, between Siskiyou County (CA) and Jackson and Josephine Counties (OR). The relatively recent discovery of P. asupak (Mead et al. 2005) and the limited range of both species have created an environment of uncertain conservation status for these species. This review will focus on four central topics of concern for land and resource managers: Biology; Taxonomy; Habitat; and Detection Probabilities/Occupancy.

Open-File Report↗

USGS2019

Temporal variability in stream fish assemblage metrics and implications for long-term monitoring

High natural variability in the condition of fish communities in headwater streams complicates detection of long-term responses to changes in water quality. As a result, little is known about the impacts and recovery of fishes from acid deposition in streams of New York. Twenty-one fish metrics from annual electrofishing surveys at 13 streams sites in the Catskill and Adirondack mountains were assessed to quantify temporal variability and identify effective monitoring strategies for detecting change in headwater stream fish assemblages. Metrics included the density and biomass of Brook Trout populations and entire fish communities using length-, area-, and effort-based standardization techniques. Linear mixed models were used to estimate changes in coefficients of variation (CV) for different classes of metrics and standardization techniques, and a simulation-based power analysis was conducted to assess differences in statistical power for each metric with various sampling designs. Metric CV varied significantly as a result of standardization technique and whether metrics were calculated for the entire community or Brook Trout only. The sampling effort necessary to detect a 30% change with power of 0.80 was strongly correlated with CV (R 2 = 0.77). The number of sampling events at the 13 sites needed to detect this change ranged from 1 to >60, suggesting metric selection can strongly affect statistical power and the resources necessary to detect change. Thus, metric selection is a complex decision that must consider study objectives and biological relevance, in addition to natural variability and statistical power. However, adequate statistical power was achieved at relatively small sample sizes using certain metrics, indicating that fish communities in headwater streams can be a valuable component of long-term assessments of acidification impacts and recovery.

New York↗

USGS2026

Long-term effects of rangeland improvements on cattle distribution: A ranch-scale case study

Resource matching can be a common assumption that underlies anthropogenic rangeland improvements for wildlife or livestock. Countless resources are spent on targeted vegetation manipulations for both livestock and wildlife, but selection for improved areas has not been well quantified in livestock. This case study investigates whether cattle exhibit preferential use of historically improved rangeland sites within sagebrush steppe ecosystems, and whether these effects are relevant long-term compared with inherent landscape heterogeneity. We used a generalized linear mixed-effects resource selection function on Global Positioning System points collected at a fix rate of 2 h from a subset of animals grazing throughout 14 pastures (totaling 13 079 ha) over 3 yr to investigate cattle distribution in relation to historical rangeland improvements. These consisted of various methods for reducing woody plant cover and increasing forage production, most followed by grass and legume reseeding. Overall selection for treated areas was positive (0.16, P < 0.0 0 01), but highly variable (pasture estimates range from-1.81 to 0.77). Differences in enhanced vegetation index (EVI) accounted for 25% of the variation in treatment selection, whereas herbaceous production did not have an appreciable effect on treatment selection. Within individual pastures, the effects of landscape variables (distance to water, slope, herbaceous production, EVI, tree cover, and shrub cover) were more variable than treatment effects and on average 2.4-fold more influential to selection than anthropogenic treatments. Still, the combined effects of all landscape variables accounted for only 8% of the variation in site selection. The observed inconsistency among selection patterns underscores the complexity of large herbivore resource selection behavior, and the statistical challenges to modeling that behavior. These results provide limited and inconsistent support for the hypothesis that large herbivores select long-term (5–20 yr post establishment) for range improvements in relation to their forage quality/quantity in a resource-matching manner.

Utah↗

USGS2021

Great expectations: Deconstructing the process pathways underlying beaver-related restoration

Beaver-related restoration is a process-based strategy that seeks to address wide-ranging ecological objectives by reestablishing dam building in degraded stream systems. Although the beaver-related restoration has broad appeal, especially in water-limited systems, its effectiveness is not yet well documented. In this article, we present a process-expectation framework that links beaver-related restoration tactics to commonly expected outcomes by identifying the set of process pathways that must occur to achieve those expected outcomes. We explore the contingency implicit within this framework using social and biophysical data from project and research sites. This analysis reveals that outcomes are often predicated on complex process pathways over which humans have limited control. Consequently, expectations often shift through the course of projects, suggesting that a more useful paradigm for evaluating process-based restoration would be to identify relevant processes and to rigorously document how projects do or do not proceed along expected process pathways using both quantitative and qualitative data.

BioScience↗

USGS2017

Measuring fish and their physical habitats: Versatile 2D and 3D video techniques with user-friendly software

Applications of video in fisheries research range from simple biodiversity surveys to three-dimensional (3D) measurement of complex swimming, schooling, feeding, and territorial behaviors. However, researchers lack a transparently developed, easy-to-use, general purpose tool for 3D video measurement and event logging. Thus, we developed a new measurement system, with freely available, user-friendly software, easily obtained hardware, and flexible underlying mathematical methods capable of high precision and accuracy. The software, VidSync, allows users to efficiently record, organize, and navigate complex 2D or 3D measurements of fish and their physical habitats. Laboratory tests showed submillimetre accuracy in length measurements of 50.8 mm targets at close range, with increasing errors (mostly <1%) at longer range and for longer targets. A field test on juvenile Chinook salmon ( Oncorhynchus tshawytscha ) feeding behavior in Alaska streams found that individuals within aggregations avoided the immediate proximity of their competitors, out to a distance of 1.0 to 2.9 body lengths. This system makes 3D video measurement a practical tool for laboratory and field studies of aquatic or terrestrial animal behavior and ecology.

Canadian Journal of Fisheries and Aquatic Sciences↗

USGS2016

Effects of water-supply reservoirs on streamflow in Massachusetts

State and local water-resource managers need modeling tools to help them manage and protect water-supply resources for both human consumption and ecological needs. The U.S. Geological Survey, in cooperation with the Massachusetts Department of Environmental Protection, has developed a decision-support tool to estimate the effects of reservoirs on natural streamflow. The Massachusetts Reservoir Simulation Tool is a model that simulates the daily water balance of a reservoir. The reservoir simulation tool provides estimates of daily outflows from reservoirs and compares the frequency, duration, and magnitude of the volume of outflows from reservoirs with estimates of the unaltered streamflow that would occur if no dam were present. This tool will help environmental managers understand the complex interactions and tradeoffs between water withdrawals, reservoir operational practices, and reservoir outflows needed for aquatic habitats. A sensitivity analysis of the daily water balance equation was performed to identify physical and operational features of reservoirs that could have the greatest effect on reservoir outflows. For the purpose of this report, uncontrolled releases of water (spills or spillage) over the reservoir spillway were considered to be a proxy for reservoir outflows directly below the dam. The ratio of average withdrawals to the average inflows had the largest effect on spillage patterns, with the highest withdrawals leading to the lowest spillage. The size of the surface area relative to the drainage area of the reservoir also had an effect on spillage; reservoirs with large surface areas have high evaporation rates during the summer, which can contribute to frequent and long periods without spillage, even in the absence of water withdrawals. Other reservoir characteristics, such as variability of inflows, groundwater interactions, and seasonal demand patterns, had low to moderate effects on the frequency, duration, and magnitude of spillage. The reservoir simulation tool was used to simulate 35 single- and multiple-reservoir systems in Massachusetts over a 44-year period (water years 1961 to 2004) under two water-use scenarios. The no-pumping scenario assumes no water withdrawal pumping, and the pumping scenario incorporates average annual pumping rates from 2000 to 2004. By comparing the results of the two scenarios, the total streamflow alteration can be parsed into the portion of streamflow alteration caused by the presence of a reservoir and the additional streamflow alteration caused by the level of water use of the system. For each reservoir system, the following metrics were computed to characterize the frequency, duration, and magnitude of reservoir outflow volumes compared with unaltered streamflow conditions: (1) the median number of days per year in which the reservoir did not spill, (2) the median duration of the longest consecutive period of no-spill days per year, and (3) the lowest annual flow duration exceedance probability at which the outflows are significantly different from estimated unaltered streamflow at the 95-percent confidence level. Most reservoirs in the study do not spill during the summer months even under no-pumping conditions. The median number of days during which there was no spillage was less than 365 for all reservoirs in the study, indicating that, even under reported pumping conditions, the reservoirs refill to full volume and spill at least once during nondrought years, typically in the spring. Thirteen multiple-reservoir systems consisting of two or three hydrologically connected reservoirs were included in the study. Because operating rules used to manage multiple-reservoir systems are not available, these systems were simulated under two pumping scenarios, one in which water transfers between reservoirs are minimal and one in which reservoirs continually transferred water to intermediate or terminal reservoirs. These two scenarios provided upper and lower estimates of spillage under average pumping conditions from 2000 to 2004. For sites with insufficient data to simulate daily water balances, a proxy method to estimate the three spillage metrics was developed. A series of 4,000 Monte Carlo simulations of the reservoir water balance were run. In each simulation, streamflow, physical reservoir characteristics, and daily climate inputs were randomly varied. Tobit regression equations that quantify the relation between streamflow alteration and physical and operational characteristics of reservoirs were developed from the results of the Monte Carlo simulations and can be used to estimate each of the three spillage metrics using only the withdrawal ratio and the ratio of the surface area to the drainage area, which are available statewide for all reservoirs. A graphical user-interface for the Massachusetts Reservoir Simulation Tool was developed in a Microsoft Access environment. The simulation tool contains information for 70 reservoirs in Massachusetts and allows for simulation of additional scenarios than the ones considered in this report, including controlled releases, dam seepage and leakage, demand management plans, and alternative water withdrawal and transfer rules.

Massachusetts↗

USGS2023

Effect of straying, reproductive strategies, and ocean distribution on the structure of American shad populations

The use of species distribution models has proliferated, providing insights for sustainable management of migratory species in a globally changing environment. However, many of these models are based on statistical relationships developed from historical conditions that may not perform well under changing or even analogous conditions caused by climate change. In this paper, we used a mechanistic species distribution model called GR3D (Global Repositioning Dynamics for Diadromous Fish Distribution) to examine the integrated dynamics of American shad ( Alosa sapidissima ) populations across their native range along the Eastern U.S. coast, where the species demonstrates latitudinal variations in life histories and reproductive strategies. The initial design of the model was adapted to incorporate region-specific parameterization to fit the species ecology. Then, a sensitivity analysis was performed to test the influences of uncertain processes regarding American shad distribution at sea, straying and reproduction on key characteristics of the species distribution. The sensitivity analysis showed the influence of the Allee effect (i.e., “depensatory” process) and the homing rate (i.e., fidelity to the breeding sites) on the probability of presence and abundances among catchments and metapopulations estimated by the model. Contrary to the homing rate, the distance of straying did not change the estimated number of metapopulations or abundances. Homing strength, however, was quite influential. The integration of complex migration patterns during the marine phase (i.e., wintering and summering offshore areas) provided more likely estimates of the species' overall distribution. Overall, our study illustrated the utility of incorporating factors governing the large-scale distribution of migratory species to improve local management.

Ecosphere↗

USGS2022

Evaluation of MPA designs that protect highly mobile megafauna now and under climate change scenarios

Marine protected area (MPA) designs, including large-scale MPAs (LSMPAs; >150,000 km 2 ), mobile MPAs (fluid spatiotemporal boundaries), and MPA networks, may offer different benefits to species and could enhance protection by encompassing spatiotemporal scales of animal movement. We sought to understand how well LSMPAs could benefit nine highly-mobile marine species in the tropics now and into the future by: 1) evaluating current range overlap within a LSMPA; 2) evaluating range overlap under climate change projections; and 3) evaluating how well theoretical MPA designs benefit these nine species. We focused on Palmyra Atoll and Kingman Reef, a 2000 km 2 area within the 1.2 million km 2 U.S. Pacific Remote Islands Marine National Monument (PRIMNM) that contains marine megafauna (reef and pelagic fishes; sea turtles; seabirds; cetaceans) reflecting different behaviors and habitat use. Our approach is useful for evaluating the effectiveness of the Palmyra-Kingman MPA and PRIMNM in protecting these species, and tropical LSMPAs in general, and for informing future MPA design. Stationary MPAs provided protection at varying scales. Reef manta rays ( Mobula alfredi ), grey reef sharks ( Carcharhinus amblyrhynchos ), green sea turtles ( Chelonia mydas ), and bottlenose dolphins ( Tursiops truncatus ) had overall small ranges (<100 km from Palmyra-Kingman) and could benefit from stationary MPAs that contained heterogenous reef habitats. Yellowfin tuna ( Thunnus albacares ), sooty terns ( Onychoprion fuscatus ), red-footed boobies ( Sula sula ), great frigatebirds ( Fregata minor ), and melon-headed whales ( Peponocephala electra ) navigated complex oceanographic processes and may benefit most from mobile MPAs that shift with features including thermal fronts, cyclic regions of elevated productivity, and eddies, if relationships with these features are established and predictable. All species had capacity to travel to nearby reef systems, illustrating potential benefits of MPA networks and protected corridors. Suitable habitats will likely contract for all species as warm water expands under climate change scenarios (species habitats were predicted to decrease by 4–49% at Palmyra-Kingman) and MPAs may not protect suitable habitats into the future. Species habitat requirements and movement ecologies are critical aspects of marine spatial planning, especially with respect to dynamic ocean processes and a changing climate.

Hawai'i↗

USGS2016

Feline immunodeficiency virus cross-species transmission: Implications for emergence of new lentiviral infections

Owing to a complex history of host-parasite coevolution, lentiviruses exhibit a high degree of species specificity. Given the well-documented viral archeology of HIV emergence following human exposures to SIV, understanding processes that promote successful cross-species lentiviral transmissions is highly relevant. We have previously reported natural cross-species transmission of a subtype of feline immunodeficiency virus, puma lentivirus A (PLVA), between bobcats ( Lynx rufus ) and mountain lions ( Puma concolor ) in a small number of animals in California and Florida. In this study we investigate host-specific selection pressures, within-host viral fitness, and inter- vs. intra-species transmission patterns among a larger collection of PLV isolates from free-ranging bobcats and mountain lions. Analysis of proviral and viral RNA levels demonstrates that PLVA fitness is severely restricted in mountain lions compared to bobcats. We document evidence of diversifying selection in three of six PLVA genomes from mountain lions, but did not detect selection among twenty PLVA isolates from bobcats. These findings support that PLVA is a bobcat-adapted virus, which is less fit in mountain lions and under intense selection pressure in the novel host. Ancestral reconstruction of transmission events reveals intraspecific PLVA transmission has occurred among panthers ( Puma concolor coryi ) in Florida following initial cross-species infection from bobcats. In contrast, interspecific transmission from bobcats to mountain lions predominates in California. These findings document outcomes of cross-species lentiviral transmission events among felids that compare to emergence of HIV from nonhuman primates. IMPORTANCE Cross-species transmission episodes can be singular, dead-end events or can result in viral replication and spread in the new species. The factors that determine which outcome will occur are complex, and the risk of new virus emergence is therefore difficult to predict. Here we use molecular techniques to evaluate transmission, fitness, and adaptation of puma lentivirus A (PLVA) between bobcats and mountain lions in two geographic regions. Our findings illustrate that mountain lion exposure to PLVA is relatively common, but does not routinely result in infections communicable in the new host. This is attributed to efficient species barriers that largely prevent lentiviral adaptation. However, the evolutionary capacity for lentiviruses to adapt to novel environments may ultimately overcome host restriction mechanisms over time and under certain ecological circumstances. This phenomenon provides a unique opportunity to examine cross-species transmission events leading to new lentiviral emergence.

California, Florida↗

USGS2019

Optimization of salt marsh management at the Chincoteague National Wildlife Refuge, Virginia, through use of structured decision making

Structured decision making is a systematic, transparent process for improving the quality of complex decisions by identifying measurable management objectives and feasible management actions; predicting the potential consequences of management actions relative to the stated objectives; and selecting a course of action that maximizes the total benefit achieved and balances tradeoffs among objectives. The U.S. Geological Survey, in cooperation with the U.S. Fish and Wildlife Service, applied an existing, regional framework for structured decision making to develop a prototype tool for optimizing salt marsh management decisions at the Chincoteague National Wildlife Refuge in Virginia. Refuge biologists, refuge managers, and research scientists identified multiple potential management actions to improve the ecological integrity of 12 salt marsh management units within the refuge and estimated the outcomes of each action in terms of performance metrics associated with each management objective. Value functions previously developed at the regional level were used to transform metric scores to a common utility scale, and utilities were summed to produce a single score representing the total management benefit that would be accrued from each potential management action. Constrained optimization was used to identify the set of management actions, one per salt marsh management unit, that would maximize total management benefits at different cost constraints at the refuge scale. Results indicated that, for the objectives and actions considered here, total management benefits may increase consistently up to approximately $ 2.5 million, but that further expenditures may yield diminishing return on investment. For multiple salt marsh management units, a scenario incorporating managing grazing practices within the marsh was selected to maximize benefits while constraining total costs for the refuge at less than $ 2.5 million. Thin-layer deposition was predicted to increase the total management benefit substantially, but at considerable total costs ( $ 2.5 million to $ 83 million). The prototype presented here provides a framework for decision making at the Chincoteague National Wildlife Refuge that can be updated as new data and information become available. Insights from this process may also be useful to inform future habitat management planning at the refuge.

Virginia↗

USGS2021

Optimization of salt marsh management at the Moosehorn National Wildlife Refuge, Maine, through use of structured decision making

Structured decision making is a systematic, transparent process for improving the quality of complex decisions by identifying measurable management objectives and feasible management actions; predicting the potential consequences of management actions relative to the stated objectives; and selecting a course of action that maximizes the total benefit achieved and balances tradeoffs among objectives. The U.S. Geological Survey, in cooperation with the U.S. Fish and Wildlife Service, applied an existing, regional framework for structured decision making to develop a prototype tool for optimizing tidal marsh management decisions at the Moosehorn National Wildlife Refuge in Maine. Refuge biologists, refuge managers, and research scientists identified multiple potential management actions to improve the ecological integrity of four marsh management units within the refuge, totaling about 13 hectares, and estimated the outcomes of each action in terms of performance metrics associated with each management objective. Value functions previously developed at the regional level were used to transform metric scores to a common utility scale, and utilities were summed to produce a single score representing the total management benefit that could be accrued from each potential management action. Constrained optimization was used to identify the set of management actions, one per marsh management unit, that could maximize total management benefits at different cost constraints at the refuge scale. Results indicated that, for the objectives and actions considered here, total management benefits may increase consistently up to $ 1,000, and may continue to increase at a lower rate with further expenditures. Potential management actions in optimal portfolios at total costs less than or equal to $ 1,000 included improving nesting habitat for Ammodramus nelsoni (Nelson’s sparrow) or restoring hydrologic connections to the upper marsh in one marsh management unit (Hobart Stream West). The potential management benefits were derived from expected increases in the density of nekton and of spiders (as an indicator of trophic health). The prototype presented here does not resolve management decisions; rather, it provides a framework for decision making at the Moosehorn National Wildlife Refuge that can be updated for implementation as new data and information become available. Insights from this process may also be useful to inform future habitat management planning at the refuge.

Maine↗

USGS2014

A synopsis of short-term response to alternative restoration treatments in sagebrush-steppe: the SageSTEP project

The Sagebrush Steppe Treatment Evaluation Project (SageSTEP) is an integrated long-term study that evaluates ecological effects of alternative treatments designed to reduce woody fuels and to stimulate the herbaceous understory of sagebrush steppe communities of the Intermountain West. This synopsis summarizes results through 3 yr posttreatment. Woody vegetation reduction by prescribed fire, mechanical treatments, or herbicides initiated a cascade of effects, beginning with increased availability of nitrogen and soil water, followed by increased growth of herbaceous vegetation. Response of butterflies and magnitudes of runoff and erosion closely followed herbaceous vegetation recovery. Effects on shrubs, biological soil crust, tree cover, surface woody fuel loads, and sagebrush-obligate bird communities will take longer to be fully expressed. In the short term, cool wet sites were more resilient than warm dry sites, and resistance was mostly dependent on pretreatment herbaceous cover. At least 10 yr of posttreatment time will likely be necessary to determine outcomes for most sites. Mechanical treatments did not serve as surrogates for prescribed fire in how each influenced the fuel bed, the soil, erosion, and sage-obligate bird communities. Woody vegetation reduction by any means resulted in increased availability of soil water, higher herbaceous cover, and greater butterfly numbers. We identified several trade-offs (desirable outcomes for some variables, undesirable for others), involving most components of the study system. Trade-offs are inevitable when managing complex natural systems, and they underline the importance of asking questions about the whole system when developing management objectives. Substantial spatial and temporal heterogeneity in sagebrush steppe ecosystems emphasizes the point that there will rarely be a “recipe” for choosing management actions on any specific area. Use of a consistent evaluation process linked to monitoring may be the best chance managers have for arresting woodland expansion and cheatgrass invasion that may accelerate in a future warming climate.

Rangeland Ecology and Management↗

USGS2017

Population characteristics and the influence of discharge on Bluehead Sucker and Flannelmouth Sucker

Rivers are among some of the most complex and important ecosystems in the world. Unfortunately, many fishes endemic to rivers have suffered declines in abundance and distribution suggesting that alterations to lotic environments have negatively influenced native fish populations. Of the 35 fishes native to the Colorado River basin (CRB), seven are considered either endangered, threatened, or species of special concern. As such, the conservation of fishes native to the CRB is a primary interest for natural resource management agencies. One of the major factors limiting the conservation and management of fishes endemic to the CRB is the lack of basic information on their ecology and population characteristics. We sought to describe the population dynamics and demographics of three populations of Bluehead Suckers ( Catostomus discobolus ) and Flannelmouth Suckers ( C. latipinnis ) in Utah. Additionally, we evaluated the potential influence of altered flow regimes on the recruitment and growth of Bluehead Suckers and Flannelmouth Suckers. Mortality of Bluehead Suckers and Flannelmouth Suckers from the Green, Strawberry, and White rivers was comparable to other populations. Growth of Bluehead Suckers and Flannelmouth Suckers was higher in the Green, Strawberry, and White rivers when compared to other populations in the CRB. Similarly, recruitment indices suggested that Bluehead Suckers and Flannelmouth Suckers in the Green, Strawberry, and White rivers had more stable recruitment than other populations in the CRB. Models relating growth and recruitment to hydrological indices provided little explanatory power. Notwithstanding, our results indicate that Bluehead Suckers and Flannelmouth Suckers in the Green, Strawberry, and White rivers represent fairly stable populations and provide baseline information that will be valuable for the effective management and conservation of the species.

Utah↗

USGS2024

Bay Miwok evening primrose: A new subspecies of Oenothera deltoides (Onagraceae) endemic to California

California contains exceptional biodiversity in geography and plant life, including numerous endemic species, some of which are cryptic. The Oenothera deltoides Torr. & Frém. species complex represents a prime example of cryptic diversity. Here, we recognize a new subspecies of Oenothera deltoides , O. deltoides subsp. julpunensis S.F.Jones, subsp. nov., that is a local endemic of windblown sand deposits on the eastern Antioch Dunes sand sheet in the San Francisco Bay-Delta region of California, USA. With the goal of providing clarity to managers of listed species and better understanding of California's diverse flora, we addressed the puzzle of O. deltoides in the region by combining range-wide field surveys with modern genomic tools. We describe the proposed subspecies, its ecology and distribution, and discuss its conservation. As a somewhat cryptic local endemic with small population size and disappearing habitat, the proposed subspecies would benefit from conservation and management to persist as a member of the California flora.

California↗

USGS2018

Optimization of salt marsh management at the Bombay Hook National Wildlife Refuge, Delaware, through use of structured decision making

Structured decision making is a systematic, transparent process for improving the quality of complex decisions by identifying measurable management objectives and feasible management actions; predicting the potential consequences of management actions relative to the stated objectives; and selecting a course of action that maximizes the total benefit achieved and balances tradeoffs among objectives. The U.S. Geological Survey, in cooperation with the U.S. Fish and Wildlife Service, applied an existing, regional framework for structured decision making to develop a prototype tool for optimizing salt marsh management decisions at the Bombay Hook National Wildlife Refuge in Delaware. Refuge biologists, refuge managers, and research scientists identified multiple potential management actions to improve the ecological integrity of eight salt marsh management units within the refuge and estimated the outcomes of each action in terms of performance metrics associated with each management objective. Value functions previously developed at the regional level were used to transform metric scores to a common utility scale, and utilities were summed to produce a single score representing the total management benefit that would be accrued from each potential management action. Constrained optimization was used to identify the set of management actions, one per salt marsh management unit, that would maximize total management benefits at different cost constraints at the refuge scale. Results indicated that for the objectives and actions considered here, total management benefits would increase consistently up to approximately \$300,000, but that further expenditures would yield diminishing return on investment. Management actions selected within optimal portfolios at total costs less than \$300,000 included hydrologic restoration, recontouring adjacent uplands to facilitate marsh migration, and burning the marsh. The prototype presented here provides a framework for decision making at the Bombay Hook National Wildlife Refuge that can be updated as new data and information become available. Insights from this process may also be useful to inform future habitat management planning at the refuge.

Delaware↗

USGS1989

Habitat suitability criteria for assessment of instream flow needs of fish

In the western portion of the United States, competition for stream water gas often been fierce. Water resource management agencies in the southeastern United States, where water has been relatively abundant, are not being faced with similar competing demands for water, and with increasing pressures to develop and defend recommendations for protecting fish and invertebrates in streams. Streamflow depletion at any time can result in severe long-term effects on fish populations(Peters, 1982). The allocation of stream water to any numerous instream or offstream uses is tied to the issues of water quantity, quality, and timing, which center on two critical questions: (1)when and how much water of an acceptable quality should be left in a stream, and (2) what happens if flow regimes are changed? Answers to these questions will probably be complex, but reliable answers are needed to protect instream and offstream values. If instream flow interests expect to compete with offstream uses for limited water supplies, they must be able to determine reliable and defensible methods for determining instream flow needs and demonstrate the environmental consequences of altered flow regimes. My objectives in this paper are: (a) to present an overview of the need, development, and use of stream habitat suitability criteria, and the use of these criteria for the assessment of instream flow needs; (b) to give a status report on the plan of the National Ecology Research Center (NERC) for expansion of instream flow research in the Southeast; and (c) to discuss the relevancy of the research to river corridor management.

Book↗

USGS2004

Investigating species co-occurrence patterns when species are detected imperfectly

1. Over the last 30 years there has been a great deal of interest in investigating patterns of species co-occurrence across a number of locations, which has led to the development of numerous methods to determine whether there is evidence that a particular pattern may not have occurred by random chance. 2. A key aspect that seems to have been largely overlooked is the possibility that species may not always be detected at a location when present, which leads to 'false absences' in a species presence/absence matrix that may cause incorrect inferences to be made about co-occurrence patterns. Furthermore, many of the published methods for investigating patterns of species co-occurrence do not account for potential differences in the site characteristics that may partially (at least) explain non-random patterns (e.g. due to species having similar/different habitat preferences). 3. Here we present a statistical method for modelling co-occurrence patterns between species while accounting for imperfect detection and site characteristics. This method requires that multiple presence/absence surveys for the species be conducted over a reasonably short period of time at most sites. The method yields unbiased estimates of probabilities of occurrence, and is practical when the number of species is small (< 4). 4. To illustrate the method we consider data collected on two terrestrial salamander species, Plethodon jordani and members of the Plethodon glutinosus complex, collected in the Great Smoky Mountains National Park, USA. We find no evidence that the species do not occur independently at sites once site elevation has been allowed for, although we find some evidence of a statistical interaction between species in terms of detectability that we suggest may be due to changes in relative abundances.

North Carolina, Tennessee↗