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Results of the US Geological Survey's second International Interlaboratory Analytical Comparison Study; Standard Reference Water Samples M-86 (major constituents), T-87 (trace constituents), and P-5 (precipitation snowmelt)

The U.S. Geological Survey began an interlaboratory testing program of standard-reference water samples in 1962. Program objectives have been to provide a means for participating anaytical laboratories to: (1) Identify analytical problems, (2) ascertain the accuracy and precision of common water analyses and analytical methods, and (3) obtain reference samples for continuing quality-assurance testing. Participation in this continuing quality-assurance program is mandatory for all domestic laboratories providing water-analysis data for Survey use and storage in the WATSTORE data-storage system, if appropriate standard-reference water samples are available. The program was expanded in October 1982 to include laboratories in other countries. This report presents analytical data submitted by the 53 laboratories in other countries that analyzed the standard-reference water samples distributed in October 1983. Statistical evaluation of the data and performance ratings achieved by the laboratories for each determination are given in nine tables. Comparisons of the most probable values for the constituents determined by both other countries and domestic laboratories also are presented. (USGS)

Water-Resources Investigations Report↗

Section 1. Simulation of surface-water integrated flow and transport in two-dimensions: SWIFT2D user's manual

A numerical model for simulation of surface-water integrated flow and transport in two (horizontal-space) dimensions is documented. The model solves vertically integrated forms of the equations of mass and momentum conservation and solute transport equations for heat, salt, and constituent fluxes. An equation of state for salt balance directly couples solution of the hydrodynamic and transport equations to account for the horizontal density gradient effects of salt concentrations on flow. The model can be used to simulate the hydrodynamics, transport, and water quality of well-mixed bodies of water, such as estuaries, coastal seas, harbors, lakes, rivers, and inland waterways. The finite-difference model can be applied to geographical areas bounded by any combination of closed land or open water boundaries. The simulation program accounts for sources of internal discharges (such as tributary rivers or hydraulic outfalls), tidal flats, islands, dams, and movable flow barriers or sluices. Water-quality computations can treat reactive and (or) conservative constituents simultaneously. Input requirements include bathymetric and topographic data defining land-surface elevations, time-varying water level or flow conditions at open boundaries, and hydraulic coefficients. Optional input includes the geometry of hydraulic barriers and constituent concentrations at open boundaries. Time-dependent water level, flow, and constituent-concentration data are required for model calibration and verification. Model output consists of printed reports and digital files of numerical results in forms suitable for postprocessing by graphical software programs and (or) scientific visualization packages. The model is compatible with most mainframe, workstation, mini- and micro-computer operating systems and FORTRAN compilers. This report defines the mathematical formulation and computational features of the model, explains the solution technique and related model constraints, describes the model framework, documents the type and format of inputs required, and identifies the type and format of output available.

Techniques and Methods↗

Heat content variation of Sierra Nevada conifers

A study of fuels of Siena Nevada conifer species showed that percent ash content, heat content with ash, and heat content without ash of needle and duff fuels significantly varied by species, fuel component, and developmental stage of the overstory. Ash and heat contents of woody fuels varied by species and fuel component but not by developmental stage. Bark fuels significantly differed by species, while no factor significantly affected cone fuels. Regional variation in ash and heat content was evident but small. However, the values reported here for heat content with ash for fine fuels averaged 2.50 MJ kg -1 higher than the standard values used in fire behavior prediction systems. Using standard values can result in significant under predictions of fireline intensity of an average of 16 percent for all species of up to 47 percent for Pinus albicaulis .

International Journal of Wildland Fire↗

Vegetation and hydrology of land-margin ecosystems: the mangroves of South Florida in relation to disturbance, global change and response to restoration

The USGS Florida Caribbean Science Center's Restoration Ecology Branch and Florida International University is conducting research on disturbance, global change and restoration of land margin ecosystems of South Florida. Criticial research for the restoration of these systems involves understanding the responses of mangrove forests to changes in the quality, quantity, timing and distribution of freshwater inflows, response to global change (e.g. sea level rise) and catastrophic disturbances such as hurricanes.

Florida↗

Columbia River Project water use plan: Mid Columbia sturgeon incubation and rearing study (year 2)

This report describes the results from the second year of a three-year investigation on the effects of different thermal regimes on incubation and rearing early life stages of white sturgeon Acipenser transmontanus. The Columbia River has been significantly altered by the construction of dams resulting in annual flows and water temperatures that differ from historical levels. White sturgeon have been demonstrated to spawn in two very distinct sections of the Columbia River in British Columbia, Canada, which are both located immediately downstream of hydropower facilities. The thermal regimes differ substantially between these two areas. The general approach of this study was to incubate and rear white sturgeon early life stages under two thermal regimes; one mimicking the current, cool water regime of the Columbia River downstream from Revelstoke Dam, and one mimicking a warmer regime similar to conditions found on the Columbia River at the international border. Second-year results suggest that thermal regimes during incubation influence rate of egg development and size at hatch. Eggs incubated under the warm thermal regime hatched sooner than those incubated under the cool thermal regime. Mean length of free embryos at hatch was significantly different between thermal regimes with free embryos from the warm thermal regime being longer at hatch. However, free embryos from the cool thermal regime had a significantly higher mean weight at hatch. This is in contrast with results obtained during 2009. The rearing trials revealed that growth of fish reared in the cool thermal regime was substantially less than growth of fish reared in the warm thermal regime. The magnitude of mortality was greatest in the warm thermal regime prior to initiation of exogenous feeding, but chronic low levels of mortality in the cool thermal regime were higher throughout the period. The starvation trials showed that the fish in the warm thermal regime exhausted their yolk reserves faster than fish in the cool thermal regime.

British Columbia↗

Evaluating the state-of-the-art in remote volcanic eruption characterization Part II: Ulawun volcano, Papua New Guinea

Retrospective eruption characterization is valuable for advancing our understanding of volcanic systems and evaluating our observational capabilities, especially with remote technologies (defined here as a space-borne system or non-local, ground-based instrumentation which include regional and remote infrasound sensors). In June 2019, the open-system Ulawun volcano, Papua New Guinea, produced a VEI 4 eruption. We combined data from satellites (including Sentinel-2, TROPOMI, MODIS, Himawari-8), the International Monitoring System infrasound network, and GLD360 globally detected lightning with information from the local authorities and social media to characterize the pre-, syn - and post-eruptive behaviour. The Rabaul Volcano Observatory recorded ~24 h of seismicity and detected SO 2 emissions ~16 h before the visually-documented start of the Plinian phase on 26 June at 04:20 UTC. Infrasound and SO 2 detections suggest the eruption started during the night on 24 June 2019 at 10:39 UTC ~38 h before ash detections with a gas-dominated jetting phase. Local reports and infrasound detections show that the second phase of the eruption started on 25 June 19:28 UTC with ~6 h of jetting. The first detected lightning occurred on 26 June 00:14 UTC, and ash emissions were first detected by Himawari-8 at 01:00 UTC. Post-eruptive satellite imagery indicates new flow deposits to the south and north of the edifice and ash fall to the west and southwest. In particular, regional infrasound data provided novel insight into eruption onset and syn -eruptive changes in intensity. We conclude that, while remote observations are sufficient for detection and tracking of syn-eruptive changes, key challenges in data latency, acquisition, and synthesis must be addressed to improve future near-real-time characterization of eruptions at minimally-monitored or unmonitored volcanoes.

Bismark volcanic arc, New Britain Island, Ulawun v↗

A Ribeiroia spp. (Class: Trematoda) - Specific PCR-based diagnostic

Increased reporting of amphibian malformations in North America has been noted with concern in light of reports that amphibian numbers and species are declining worldwide. Ribeiroia ondatrae has been shown to cause a variety of types of malformations in amphibians. However, little is known about the prevalence of R. ondatrae in North America. To aid in conducting field studies of Ribeiroia spp., we have developed a polymerase chain reaction (PCR)-based diagnostic. Herein, we describe the development of an accurate, rapid, simple, and cost-effective diagnostic for detection of Ribeiroia spp. infection in snails (Planorbella trivolvis). Candidate oligonucleotide primers for PCR were designed via DNA sequence analyses of multiple ribosomal internal transcribed spacer-2 regions from Ribeiroia spp. and Echinostoma spp. Comparison of consensus sequences determined from both genera identified areas of sequence potentially unique to Ribeiroia spp. The PCR reliably produced a diagnostic 290-base pair (bp) product in the presence of a wide concentration range of snail or frog DNA. Sensitivity was examined with DNA extracted from single R. ondatrae cercaria. The single-tube PCR could routinely detect less than 1 cercariae equivalent, because DNA isolated from a single cercaria could be diluted at least 1:50 and still yield a positive result via gel electrophoresis. An even more sensitive nested PCR also was developed that routinely detected 100 fg of the 290-bp fragment. The assay did not detect furcocercous cercariae of certain Schistosomatidae, Echinostoma sp., or Sphaeridiotrema globulus nor adults of Clinostomum sp. or Cyathocotyle bushiensis. Field testing of 137 P. trivolvis identified 3 positives with no overt environmental cross-reactivity, and results concurred with microscopic examinations in all cases. ?? American Society of Parasitologists 2007.

Journal of Parasitology↗

Chemical analyses of deep core coal and shale samples from the Almond Formation, Washakie Basin, Sweetwater County, Wyoming

During gas and oil exploration efforts in the Washakie Basin in Sweetwater County, Wyoming, undertaken by Ladd Petroleum Co. (a subsidiary of Utah International Inc.) core from the Upper Cretaceous Almond Formation of the Mesaverde Group was collected from their 1-22 Federal well. (See figure 1 for location.) From this core three coal and two carbonaceous shale samples, orginally at depths ranging from 3,091 to 3,116 m (see table 1 for descriptions), were selected and given to the U.S. Geological Survey for study. Results of chemical analyses on the samples and a comparison of these analyses with analyses of near-surface Almond Formation coal samples in Carbon County, Wyoming, are the topics of this report.

Sweetwater County↗

Taiga bean goose: Harvest assessment for the Central Management Unit: 2018

In 2016 the European Goose Management International Working Group (EGM IWG) began development of an adaptive harvest management program for Taiga Bean Geese (TBG). In 2017, the EGM IWG adopted an interim harvest strategy consisting of a constant harvest rate (on adults) of 3% for the Central Management of Taiga Bean Geese. The interim strategy is intended to provide limited hunting opportunity while rebuilding the population. Recent efforts have involved development of a dynamic strategy in which the harvest rate can vary each year with changes in population size, and in which multiple, possibly competing, management objectives can be addressed. This report provides examples of dynamic harvest strategies and compares them with the interim, constant harvest-rate strategy. Until such time that a dynamic strategy is adopted by the EGM IWG, the annual harvest quota and its allocation among Range States is predicated on the interim strategy. Based on a January count of 38,717, the harvest quota for the 2018 hunting season is 1,610 Taiga Bean Geese (compared to 2,335 for the 2017 season). We emphasize that these quotas include both harvest during the regular season and derogation shooting. We acknowledge that the January 2018 count of Taiga Bean Geese in the Central Management Unit was likely biased low, as counts in the autumn and spring in Sweden were higher. Additionally, the size of the harvest during the fall and winter of 2017-18 is unknown, due to an inability to differentiate taiga and Tundra Bean Geese in the harvest, compilation of data too late to be used in this report, and a lack of reporting. Because of problems with both the population and harvest monitoring programs it is difficult to estimate a harvest quota for 2018 with any degree of confidence.

Report↗

Environmental contaminants and biomarker responses in fish from the Rio Grande and its U.S. tributaries: Spatial and temporal trends

We collected, examined, and analyzed 368 fish of seven species from 10 sites on rivers of the Rio Grande Basin (RGB) during late 1997 and early 1998 to document temporal and geographic trends in the concentrations of accumulative contaminants and to assess contaminant effects on the fish. Sites were located on the mainstem of the Rio Grande and on the Arroyo Colorado and Pecos River in Texas (TX), New Mexico (NM), and Colorado. Common carp (Cyprinus carpio) and largemouth bass (Micropterus salmoides) were the targeted species. Fish were examined in the field for internal and external visible gross lesions, selected organs were weighed to compute ponderal and organosomatic indices, and samples of tissues and fluids were obtained and preserved for analysis of fish health and reproductive biomarkers. Whole fish from each station were composited by species and gender and analyzed for organochlorine chemical residues and elemental contaminants using instrumental methods, and for 2,3,7,8-tetrachloro dibenzo-p-dioxin-like activity (TCDD-EQ) using the H4IIE rat hepatoma cell bioassay. Overall, fish from lower RGB stations contained greater concentrations of organochlorine pesticide residues and appeared to be less healthy than those from sites in the central and upper parts of the basin, as indicated by a general gradient of residue concentrations and biomarker responses. A minimal number of altered biomarkers and few or no elevated contaminant concentrations were noted in fish from the upper RGB. The exception was elevated concentrations [up to 0.46 ??g/g wet-weight (ww)] of total mercury (Hg) in predatory species from the Rio Grande at Elephant Butte Reservoir, NM, a condition documented in previous studies. Arsenic (As) and selenium (Se) concentrations were greatest in fish from sites in the central RGB; Se concentrations in fish from the Pecos River at Red Bluff Lake, TX and from the Rio Grande at Langtry, TX and Amistad International Reservoir, TX exceeded published fish and wildlife toxicity thresholds. In the lower RGB, residues of p,p???-DDT metabolites (???1.69 ??g/g ww), chlordane-related compounds (???0.21 ??g/g ww), dieldrin (???0.0.05 ??g/g ww), and toxaphene (???2.4 ??g/g ww) were detected in fish from most sites; maximum concentrations were in channel catfish (Ictalurus punctatus) from the Arroyo Colorado at Harlingen, TX. Concentrations of one or more residues exceeded toxicity thresholds for fish and wildlife in fish from this site and from the Rio Grande at Mission, TX and Brownsville, TX; however, concentrations were lower than those reported by previous studies. In addition, the proportional concentrations of p,p???-DDT at all sites were low, indicating weathered DDT rather than the influx of new material. Concentrations of total PCBs (<0.05 ??g/g ww) and TCDD-EQ (???6 pg/g ww) were comparatively low in all samples. Hepatic ethoxyresorufin O-deethylase (EROD) activity in some fish was elevated relative to reference rates at most sites, but was generally lower than previously reported activity in fish from heavily contaminated locations. The comparatively low PCB and TCDD-EQ concentrations together with elevated EROD activity may reflect exposure to polycyclic aromatic hydrocarbons. Reproductive biomarkers were consistent with chronic contaminant exposure at lower RGB sites; comparatively large percentages of intersex male largemouth bass, relatively low gonadosomatic indices, and elevated plasma vitellogenin concentrations in male fish were noted at three of the four stations. Large percentages of atretic eggs were also observed in the ovaries of female common carp from the Rio Grande at Brownsville, TX. Although many of the conditions noted may have other causes in addition to contaminant exposure, the biomarker results for the lower RGB sites are consistent with subtle responses of fish to contaminants, an interpretation supported by the chemical data of this and other investigations.

Science of the Total Environment↗

U.S.-Mexico Border Geographic Information System

Geographic Information Systems (GIS) and the development of extensive geodatabases have become invaluable tools for addressing a variety of contemporary societal issues and for making predictions about the future. The United States-Mexico Geographic Information System (USMX-GIS) is based on fundamental datasets that are produced and/or approved by the national geography agencies of each country, the U.S. Geological Survey (USGS) and the Instituto Nacional de Estadistica Y Geografia (INEGI) of Mexico, and the International Boundary and Water Commission (IBWC). The data are available at various scales to allow both regional and local analysis. The USGS and the INEGI have an extensive history of collaboration for transboundary mapping including exchanging digital technology and developing methods for harmonizing seamless national level geospatial datasets for binational environmental monitoring, urban growth analysis, and other scientific applications.

Fact Sheet↗

U.S. Geological Survey disaster response and the International Charter for space and major disasters

In 1999, an international consortium of space agencies conceived and approved a mechanism to provide satellite information in support of worldwide disaster relief. This group came to be known as the 'International Charter?Space and Major Disasters' and has become an important resource for the use of satellite data to evaluate and provide support for response to natural and man-made disasters. From the Charter's formative days in 1999, its membership has grown to 10 space organizations managing more than 20 earth-observing satellites.

Fact Sheet↗

Geodynamics map of northeast Asia

This map portrays the geodynamics of Northeast Asia at a scale of 1:5,000,000 using the concepts of plate tectonics and analysis of terranes and overlap assemblages. The map is the result of a detailed compilation and synthesis at 5 million scale and is part of a major international collaborative study of the mineral resources, metallogenesis, and tectonics of northeast Asia conducted from 1997 through 2002 by geologists from earth science agencies and universities in Russia, Mongolia, northeastern China, South Korea, Japan, and the USA.

Asia↗

Hydrogeologic setting, conceptual groundwater flow system, and hydrologic conditions 1995–2010 in Florida and parts of Georgia, Alabama, and South Carolina

The hydrogeologic setting and groundwater flow system in Florida and parts of Georgia, Alabama, and South Carolina is dominated by the highly transmissive Floridan aquifer system. This principal aquifer is a vital source of freshwater for public and domestic supply, as well as for industrial and agricultural uses throughout the southeastern United States. Population growth, increased tourism, and increased agricultural production have led to increased demand on groundwater from the Floridan aquifer system, particularly since 1950. The response of the Floridan aquifer system to these stresses often poses regional challenges for water-resource management that commonly transcend political or jurisdictional boundaries. To help water-resource managers address these regional challenges, the U.S. Geological Survey (USGS) Water Availability and Use Science Program began assessing groundwater availability of the Floridan aquifer system in 2009. The current conceptual groundwater flow system was developed for the Floridan aquifer system and adjacent systems partly on the basis of previously published USGS Regional Aquifer-System Analysis (RASA) studies, specifically many of the potentiometric maps and the modeling efforts in these studies. The Floridan aquifer system extent was divided into eight hydrogeologically distinct subregional groundwater basins delineated on the basis of the estimated predevelopment (circa 1880s) potentiometric surface: (1) Panhandle, (2) Dougherty Plain-Apalachicola, (3) Thomasville-Tallahassee, (4) Southeast Georgia-Northeast Florida-South South Carolina, (5) Suwannee, (6) West-central Florida, (7) East-central Florida, and (8) South Florida. The use of these subregions allows for a more detailed analysis of the individual basins and the groundwater flow system as a whole. The hydrologic conditions and associated groundwater budget were updated relative to previous RASA studies to include additional data collected since the 1980s and to reflect the entire groundwater flow system, including the surficial, intermediate, and Floridan aquifer systems for a contemporary period (1995–2010). Inflow to the groundwater flow system of 33,700 million gallons per day (Mgal/d) was assumed to be exclusively from net recharge (precipitation minus evapotranspiration and surface runoff). Outflow from the groundwater flow system included spring discharge (7,700 Mgal/d) and groundwater withdrawals (5,200 Mgal/d). Estimates for all components of the groundwater system were not possible because of large uncertainties associated with internal leakage, coastal discharge, and discharge to streams and lakes. A numerical modeling analysis is required to improve this hydrologic budget calculation and to forecast future changes in groundwater levels and aquifer storage caused by groundwater withdrawals, land-use change, and the effects of climate variability and change.

Alabama, Florida, Georgia, South Carolina↗

Guidelines on preparedness before, during, and after an ashfall

This document has been prepared by the International Volcanic Health Hazard Network (IVHHN), Cities and Volcanoes Commission, GNS Science and the United States Geological Survey (USGS) to promote the safety of those who experience volcanic ashfall. It details procedures to follow if warning of a volcanic ashfall is given, recommends what to do during ashfall, and what methods are most effective for cleaning up volcanic ash after the event.

Report↗

Classification of lung cancer patients and controls by chromatography of modified nucleosides in serum

A wide spectrum of modified nucleosides has been quantified by high-performance liquid chromatography in serum of 49 male lung cancer patients, 35 patients with other cancers, and 48 patients hospitalized for nonneoplastic diseases. Data for 29 modified nucleoside peaks were normalized to an internal standard and analyzed by discriminant analysis and stepwise discriminant analysis. A model based on peaks selected by a stepwise discriminant procedure correctly classified 79% of the cancer and 75% of the noncancer subjects. It also demonstrated 84% sensitivity and 79% specificity when comparing lung cancer to noncancer subjects, and 80% sensitivity and 55% specificity in comparing lung cancer to other cancers. The nucleoside peaks having the greatest influence on the models varied dependent on the subgroups compared, confirming the importance of quantifying a wide array of nucleosides. These data support and expand previous studies which reported the utility of measuring modified nucleoside levels in serum and show that precise measurement of an array of 29 modified nucleosides in serum by high-performance liquid chromatography with UV scanning with subsequent data modeling may provide a clinically useful approach to patient classification in diagnosis and subsequent therapeutic monitoring.

Cancer Research↗

Estimates of the mechanical properties of lunar surface using tracks and secondary impact craters produced by blocks and boulders

Estimates of bearing capacities of lunar surfaces using tracks and secondary impact craters produced by blocks and boulders shown in photographs taken by Lunar Orbiters II and III are the same order of magnitude as those reported by the Surveyor project, but they are generally less. Static analyses of 48 lunar blocks and boulders and their tracks yield friction angles between 10° and 30° and averaging about 17°. These values were computed using: (1) Terzaghi's bearing capacity equations for circular footings, (2) Meyerhof's dimensionless numbers for general shear on level surfaces, (3) a cohesion of 10 3 dynes per cm 2 , (4) a density of 1.35 gm per cm 3 for the near surface materials, (5) a density of 2.7 gm per cm 3 for the block or boulder, (6) spheroidal (triaxial) boulders unless definite shapes can be established, (7) footing radii equal to the half-width of the block or boulder, the half-width of the track, and(or) the half-width of the shadow near the base of the block or boulder. For 115 secondary impact craters and their corresponding blocks, dynamic strengths are estimated using: (1) the product of one-half the mass per unit area of the block and the normal component of velocity squared divided by the crater depth, and (2) the ratio of the kinetic energy of the block and the volume of the secondary crater. Velocities of the blocks are calculated using a ballistics equation and assuming an ejection angle of 45°. Block densities are taken as 2.7 gm per cm 3 . Dynamic strengths of the near surface materials using the first procedure average 25.2 x 10 5 dynes per cm 2 (37 psi); and, for the second procedure, they average 19.2 x 10 5 dynes per cm 2 (28 psi). Comparison between dynamic strengths and expected static strengths, computed for each block using the assumptions above, show that most of the dynamic strengths correspond to the static strengths when the friction angle is 30° and larger. Data on experimental low velocity impacts with natural targets are compared with the lunar data on secondary impacts. Nara's modified Poncelet equation for sand yields an average angle of internal friction near 34° using the appropriate block and soil constants mentioned above. Comparison of coefficients computed using the equations for sand of Clark and McCarty, Mortensen, and Moore for the lunar data with the corresponding constants for terrestrial data indicate the lunar coefficients are generally low. These low values can be brought into better agreement with terrestrial data on sand by increasing the assumed ejection angles to 60° or 70° and considering the effect of the low acceleration of gravity at the lunar surface.

Open-File Report↗

Interlaboratory comparison of SARS-CoV2 molecular detection assays in use by U.S. veterinary diagnostic laboratories

The continued search for intermediate hosts and potential reservoirs for SARS-CoV2 makes it clear that animal surveillance is critical in outbreak response and prevention. Real-time RT-PCR assays for SARS-CoV2 detection can easily be adapted to different host species. U.S. veterinary diagnostic laboratories have used the CDC assays or other national reference laboratory methods to test animal samples. However, these methods have only been evaluated using internal validation protocols. To help the laboratories evaluate their SARS-CoV2 test methods, an interlaboratory comparison (ILC) was performed in collaboration with multiple organizations. Forty-four sets of 19 blind-coded RNA samples in Tris-EDTA (TE) buffer or PrimeStore transport medium were shipped to 42 laboratories. Results were analyzed according to the principles of the International Organization for Standardization (ISO) 16140-2:2016 standard. Qualitative assessment of PrimeStore samples revealed that, in approximately two-thirds of the laboratories, the limit of detection with a probability of 0.95 (LOD95) for detecting the RNA was ≤20 copies per PCR reaction, close to the theoretical LOD of 3 copies per reaction. This level of sensitivity is not expected in clinical samples because of additional factors, such as sample collection, transport, and extraction of RNA from the clinical matrix. Quantitative assessment of Ct values indicated that reproducibility standard deviations for testing the RNA with assays reported as N1 were slightly lower than those for N2, and they were higher for the RNA in PrimeStore medium than those in TE buffer. Analyst experience and the use of either a singleplex or multiplex PCR also affected the quantitative ILC test results.

Journal of Veterinary Diagnostic Investigation↗