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At least 919 records · Page 51Linked to original sources
USGS2021

Assessing the uncertainties in climatic estimates based on vegetation assemblages: Examples from modern vegetation assemblages in the American Southwest

Assemblages of fossil plant remains have been widely used to reconstruct past climatic conditions, usually through the application of methods that involve either finding vegetation analogues on the modern landscape (and using the modern associated climatic values as the basis for an estimate) or using the modern climatic ranges of individual taxa in an assemblage to determine the range of a given climate variable that would allow these plant taxa to live together. Although these approaches are relatively straightforward, it is difficult to assess the uncertainties associated with each approach, particularly in regard to their application to plant macrofossil assemblages. To explore the uncertainty that may arise from inaccuracy and imprecision in climate reconstructions and from ecological considerations we used variants of both approaches to estimate climate from two data sets of modern vegetation assemblages from the southwestern United States: (1) 1752 gridded “virtual plant assemblages” based on plant range maps that provide uniform spatial coverage of the presence or absence of major woody plant taxa across the study area; and (2) 43 modern packrat ( Neotoma spp.) midden presence-absence assemblages that are similar to fossil midden assemblages. By comparing observed and estimated climate values, we evaluated the quality of the climate estimates, identified sources of uncertainty, and characterized the nature and magnitude of the effects of these uncertainties on the climate estimates. Uncertainties in estimating climate from vegetation assemblages arise because any given plant taxon (or assemblage) must have the resiliency to survive a range of climatic variability, and because of the strong intercorrelations among climatic variables in the modern climate data. Additional sources of uncertainty in climate estimates from plant assemblages include: (1) the modern climate and plant distribution data that are selected as the basis for estimation; (2) the particular quantitative approach that is used to estimate climate; (3) the sufficiency of the number of taxa in the analysis for providing an unbiased representation of the vegetation community as it existed for each time period in the analysis; and, (4) the location of the assemblage on the climatic and environmental gradients in the calibration data set for each climate variable under consideration. We conclude that vegetation assemblages can provide valid and reproducible estimates of climatic variables and that the primary trends and mapped patterns in the observed climate data can be reconstructed from such estimates. However, many factors may affect the quality of an estimate from a given plant assemblage, including aspects of data selection, data adequacy, methodologies, and the location of the assemblage site relative to gradients in the base climate data. It is particularly difficult to accurately estimate extreme values in the observed climate data, because estimated values from either end of an observed climate gradient necessarily “move toward the middle” of the gradient. In addition, the interval chosen to represent modern climate (here we used 1961 to 1990) may have a large impact on the size of the estimated difference between modern and past climate at a given site.

Arizona, California, Colorado, Nevada, New Mexico,↗
USGS2019

Control of invasive sea lampreys using the piscicides TFM and niclosamide: Toxicology, successes & future prospects

The invasion of the Laurentian Great Lakes of North America by sea lampreys ( Petromyzon marinus ) in the early 20th century contributed to the depletion of commercial, recreational and culturally important fish populations, devastating the economies of communities that relied on the fishery. Sea lamprey populations were subsequently controlled using an aggressive integrated pest-management program which employed barriers and traps to prevent sea lamprey from migrating to their spawning grounds and the use of the piscicides (lampricides) 3-trifluoromethyl-4-nitrophenol (TFM) and niclosamide to eliminate larval sea lampreys from their nursery streams. Although sea lampreys have not been eradicated from the Great Lakes, populations have been suppressed to less than 10% of their peak numbers in the mid-1900s. The ongoing use of lampricides provides the foundation for sea lamprey control in the Great Lakes, one of the most successful invasive species control programs in the world. Yet, significant gaps remain in our understanding of how lampricides are taken-up and handled by sea lampreys, how lampricides exert their toxic effects, and how they adversely affect non-target invertebrate and vertebrates species. In this review we examine what has been learned about the uptake, handling and elimination, and the mode of TFM and niclosamide toxicity in lampreys and in non-target animals, particularly in the last 10 years. It is now clear that the mode of TFM toxicity is the same in non-target fishes and lampreys, in which TFM interferes with oxidative phosphorylation by the mitochondria leading to decreased ATP production. Vulnerability to TFM is related to abiotic factors such as water pH and alkalinity, which we propose changes the relative amounts of the bioavailable un-ionized form of TFM in the gill microenvironment. Niclosamide, which is also a molluscicide used to control snails in areas prone to schistosomiasis infections of humans, also likely works by uncoupling oxidative phosphorylation, but less is known about other aspects of its toxicology. The effects of TFM include reductions in energy stores, particularly glycogen and high energy phosphagens. However, non-target fishes readily recover from sub-lethal TFM exposure as demonstrated by the rapid restoration of energy stores and clearance of TFM. Although both TFM and niclosamide are non-persistent in the environment and critical for sea lamprey control, increasing public and institutional concerns about pesticides in the environment makes it imperative to explore other means of sea lamprey control. Accordingly, we also address possible “next-generation” strategies of sea lamprey control including genetic tools such as RNA interference and CRISPR-Cas9 to impair critical physiological processes (e.g. reproduction, digestion, metamorphosis) in lamprey, and the use of green chemistry to develop more environmentally benign chemical methods of sea lamprey control.

Great Lakes↗
USGS2014

Ecological risks of shale oil and gas development to wildlife, aquatic resources and their habitats

Technological advances in hydraulic fracturing and horizontal drilling have led to the exploration and exploitation of shale oil and gas both nationally and internationally. Extensive development of shale resources has occurred within the United States over the past decade, yet full build out is not expected to occur for years. Moreover, countries across the globe have large shale resources and are beginning to explore extraction of these resources. Extraction of shale resources is a multistep process that includes site identification, well pad and infrastructure development, well drilling, high-volume hydraulic fracturing and production; each with its own propensity to affect associated ecosystems. Some potential effects, for example from well pad, road and pipeline development, will likely be similar to other anthropogenic activities like conventional gas drilling, land clearing, exurban and agricultural development and surface mining (e.g., habitat fragmentation and sedimentation). Therefore, we can use the large body of literature available on the ecological effects of these activities to estimate potential effects from shale development on nearby ecosystems. However, other effects, such as accidental release of wastewaters, are novel to the shale gas extraction process making it harder to predict potential outcomes. Here, we review current knowledge of the effects of high-volume hydraulic fracturing coupled with horizontal drilling on terrestrial and aquatic ecosystems in the contiguous United States, an area that includes 20 shale plays many of which have experienced extensive development over the past decade. We conclude that species and habitats most at risk are ones where there is an extensive overlap between a species range or habitat type and one of the shale plays (leading to high vulnerability) coupled with intrinsic characteristics such as limited range, small population size, specialized habitat requirements, and high sensitivity to disturbance. Examples include core forest habitat and forest specialists, sagebrush habitat and specialists, vernal pond inhabitants and stream biota. We suggest five general areas of research and monitoring that could aid in development of effective guidelines and policies to minimize negative impacts and protect vulnerable species and ecosystems: (1) spatial analyses, (2) species-based modeling, (3) vulnerability assessments, (4) ecoregional assessments, and (5) threshold and toxicity evaluations.

Environmental Science & Technology↗
USGS2016

Transformative environmental governance

Transformative governance is an approach to environmental governance that has the capacity to respond to, manage, and trigger regime shifts in coupled social-ecological systems (SESs) at multiple scales. The goal of transformative governance is to actively shift degraded SESs to alternative, more desirable, or more functional regimes by altering the structures and processes that define the system. Transformative governance is rooted in ecological theories to explain cross-scale dynamics in complex systems, as well as social theories of change, innovation, and technological transformation. Similar to adaptive governance, transformative governance involves a broad set of governance components, but requires additional capacity to foster new social-ecological regimes including increased risk tolerance, significant systemic investment, and restructured economies and power relations. Transformative governance has the potential to actively respond to regime shifts triggered by climate change, and thus future research should focus on identifying system drivers and leading indicators associated with social-ecological thresholds.

Annual Review of Environment and Resources↗
USGS2006

Water-Quality Data for Selected National Park Units within the Southern Colorado Plateau Network, Arizona, Utah, Colorado, and New Mexico, Water Years 2005 and 2006

The National Park Service initiated a Level 1 Water-Quality Inventory program to provide water-quality data to park managers so informed natural resource management decisions could be made. Level 1 water-quality data were collected by the U.S. Geological Survey Arizona Water Science Center at 57 sites in 13 National Park units located in the Southern Colorado Plateau Inventory and Monitoring network in water years 2005 and 2006. These data describe the current water-quality at selected sites within the park units and provide information for monitoring future trends. Water samples were collected three times at each type of site including wells, springs, seeps, tinajas, rivers, a lake, and an irrigation ditch. Field measurements were taken at each site and they included pH, specific conductance, temperature, barometric pressure, dissolved oxygen, alkalinity, turbidity, and discharge rates where applicable. Water samples collected were sent to the U.S. Geological Survey National Water Quality Laboratory and analyzed for major ions, trace elements, and nutrients. The National Water Quality Laboratory also analyzed selected samples for mercury and petroleum hydrocarbons. Additional samples at selected sites were collected and analyzed for cyanide, radiochemistry, and suspended sediment by U.S. Geological Survey contract labs. Fecal-indicator bacteria (Escherichia coli) were sampled for at selected sites as another indicator of water quality. Quality control for this study was achieved through proper training of field personnel, use of standard U.S. Geological Survey field and laboratory protocols, collection of sample blanks and replicates, and a thorough review of the water-quality analyses. Measured field pH ranged from 6.0 to 8.8, within normal range for springs and rivers, at most sites. Concentrations of dissolved solids ranged from 48 to 8,680 mg/L and the majority of samples had concentrations of dissolved solids below 900 mg/L. Trace-element concentrations at most sites were at or near the laboratory reporting levels. The highest overall trace-element concentrations were found at U.S. Highway 160 Spring near Park Entrance to Mesa Verde National Park. Concentrations of uranium in samples at all sites ranged from below the detection limit to 55.7 ?g/L. Water samples from selected sites were analyzed for total petroleum hydrocarbons and concentrations of total petroleum hydrocarbons were at or above the laboratory detection limit in samples at six National Park units. Ten sites were sampled for Escherichia coli and positive counts were found at 9 out of the ten sites, the highest colony counts were found at Chinle Creek at Chinle, AZ in Canyon de Chelly National Monument. Measured concentrations of dissolved ammonia, nitrite, and nitrate were at or near laboratory reporting levels at most sites; nitrate concentrations ranged from below the reporting limit (0.047 mg/L) to 9.77 mg/L. Samples that were analyzed for mercury had concentrations below or at the laboratory reporting level. Concentrations of cyanide were less than the laboratory reporting level for all samples except two, Spruce Tree House Spring in Mesa Verde National Park and Pine Tree Canyon Tinaja in Canyon de Chelly National Monument, which had average concentrations of .042 and .011 ?g/L respectively. Gross alpha/beta radioactivity counts were below the U.S. Environmental Protection Agency maximum contaminant level except for samples from Casa Chiquita Well  Middle at Chaco Culture National Historical Park which averaged 35 pCi/L. Suspended-sediment concentrations were variable and ranged from 10 to 150,000 mg/L.

Open-File Report↗
USGS2023

Integrated rangeland fire management strategy actionable science plan completion assessment: Restoration topic, 2015–20

Loss and degradation of sagebrush rangelands due to an accelerated invasive annual grass-wildfire cycle and other stressors are substantial management, conservation, and economic issues in the western United States. These sagebrush rangelands comprise a unique biome spanning 11 states, support over 350 wildlife species, and provide important ecosystem services that include stabilizing the economies of western communities. Impacts to sagebrush ecosystem processes over large areas due to the annual grass-wildfire cycle necessitated the development of a coordinated, science-based strategy for improving efforts to achieve long-term protection, conservation, and restoration of sagebrush rangelands, which was framed in 2015 under the Integrated Rangeland Fire Management Strategy (IRFMS). Central to this effort was the development of an Actionable Science Plan (Plan) that identified 37 priority science needs (Needs) for informing the actions proposed under the 5 topics (Fire, Invasives, Restoration, Sagebrush and Sage-Grouse, Climate and Weather) that were part of the collective focus of the IRFMS. Notable keys to this effort were identification of the Needs co-produced by managers and researchers, and a focus on resulting science being “actionable.” Substantial investments aimed at fulfilling the Needs identified in the Plan have been made since its release in 2016. While the state of the science has advanced considerably, the extent to which knowledge gaps remain relative to identified Needs is relatively unknown. Moreover, new Needs have likely emerged since the original strategy as results from actionable science reveal new questions, and possible (yet untested) solutions. A quantifiable assessment of the progress made on the original science Needs can identify unresolved gaps and new information that can help inform prioritization of future research efforts. This report details a systematic literature review that evaluated how well peer-reviewed journal articles and formal technical reports published between January 1, 2015, and December 31, 2020, addressed 10 needs (hereinafter “Needs”) identified under the Restoration topic in the Plan. The topic outlined research Needs for improving restoration success in degraded sagebrush rangelands. We established the level of progress towards addressing each Need following a standardized set of criteria, and developed summaries detailing how research objectives nested within Needs identified in the Plan (“Next Steps”) were either addressed well, partially addressed or remain outstanding (that is, addressed poorly) in the literature through 2020. Our searches resulted in the inclusion of 371 science products that at least partially addressed a Need identified in the Restoration topic. The Needs that were well and partially addressed included: the development of methods to improve seeding success of native plants after fire; evaluation of short- and long-term plant responses relative to biotic and abiotic factors following restoration treatments; assessments of long-term effects on ecosystem processes following conifer removal treatments and development of decision support tools to aid in conifer management; determination of the costs of restoration treatments relative to the benefits to sage-grouse occupancy, survival, and populations; and assessments of the factors which contribute to soil degradation and development of soil enhancement methods that enhance seed germination and seedling survival while resisting nonnative plants. Needs that were not addressed well included: the development of methods for the rapid recovery of sagebrush and native herbaceous plants following wildfire and determination of whether treatments benefit sage-grouse and mitigate impacts from fires; determination of thresholds for successful restoration across a range of environmental conditions and development of decision support tools to assist with restoration effectiveness monitoring; and development and evaluation of the utility of seed transfer zones. The information provided in this assessment will assist updating the Plan along with other science strategies.

western United States↗
USGS1995

Pesticides in the atmosphere; distribution, trends, and governing factors

A comprehensive review of existing literature on the occurrence and distribution of pesticides in the atmosphere of the United States and adjoining Canadian provinces showed that the atmosphere is an important part of the hydrologic cycle that acts to distribute and deposit pesticides in areas far removed from their application sites. A compilation of existing data shows that pesticides have been detected in the atmosphere throughout the nation. Most of the available information on pesticides in the atmosphere is from small-scale, short-term studies that seldom lasted more than one year. Only two national-scale, multi-year studies were done since the late 1960's that analyzed for a wide variety of pesticides in air that were in current use at the time. Another large-scale study was done during 1990-91, but was limited to the midwestern and northeastern United States and only analyzed for two classes of herbicides in wet deposition. Most of the pesticides analyzed for were detected in either air or rain, and represent about 25 percent of the total number of insecticides, herbicides, and fungicides in current use. The geographical distribution of studies, and the type of sampling and analysis were highly variable with most of the historical study efforts concentrated in the Great Lakes area and California. Air and rain were the main atmospheric matrices sampled, but pesticides were also detected in fog and snow. Reported pesticide concentrations in air and rain were frequently positively correlated to their regional agricultural use. Deviations from this relation could usually be explained by non-agricultural use of pesticides, sampling and analytical difficulties, and environmental persistence. High concentrations of locally used pesticides were found to occur seasonally, usually in conjunction with spring planting of row crops and warm temperatures, but high concentrations also occurred during winter months in those areas where dormant orchards were sprayed. The environmentally more persistent pesticides were detected in the atmosphere at low concen- trations throughout the year. Deposition of airborne pesticides can have significant effects on water quality, but neither the nature of nor the magnitude of these effects can be determined with certainty on the basis of the type of data currently available. The lack of consistent, long-term regional and national monitoring and study of pesticides in atmospheric matrices severely limits assessment capability.

Open-File Report↗
USGS1995

Dicofol and DDT residues in lizard carcasses and bird eggs from Texas, Florida, and California

Dicofol is an organochlorine agricultural pesticide used to control mites. The principal commercial dicofol product is known as Kelthane TM. More than 70% of dicofol product (about 3 million Ib or 1.4 million kg) sold annually in the U.S. is applied in California, Arizona, Texas, and Florida. Florida citrus and California cotton receive more than half the total (Clark 1990). In laboratory studies, dicofol, which is structurally similar to DDT, had adverse impacts on reproduction in fish (deformed larvae, delayed hatching), birds (reduced eggshell thickness, reduced hatchability), and mammals (reduced insemination rate, reduced pregnancy rate, failure to produce young) (see Clark 1990 for review). Overall, the reproduction of birds seems less sensitive to dicofol than to DDE. However, in birds, dietary concentrations of dicofol between 1 and 10 µg/g (wet weight) fed to captive adult females caused such problems as eggshell thinning, reduced hatching success, or reduced fertility in American kestrels ( Falco sparverius ) (Fry et al. 1988, Clark et al. 1990) and eastern screech-owls ( Otus asio ) (Wiemeyer et al. 1989). In spite of these laboratory findings, there have been no intensive field investigations of possible reproductive effects of dicofol on wild birds. Such studies must wait until field residue data are sufficient to identify populations with high exposure. If dicofol accumulates in birds in the field and heavily exposed populations can be identified, then their reproduction can be studied. Residues have not been reported from reptiles. Analytical screening of wildlife tissue samples for organochlorine chemicals only rarely includes dicofol, and this may explain why the relative hazard of dicofol to wildlife populations is poorly known.

California, Florida, Texas↗
USGS2011

A comparison of approaches for estimating relative impacts of nonnative fishes

Lack of standard methods for quantifying impact has hindered risk assessments of high-impact invaders. To understand methodological strengths and weaknesses, we compared five approaches (in parentheses) for quantifying impact of nonnative fishes: reviewing documented impacts in a large-scale database (review); surveying fish biologists regarding three categories of impact (socioeconomic, ecological, abundance); and estimating frequency of occurrence from existing collection records (collection). In addition, we compared game and nongame biologists’ ratings of game and nongame species. Although mean species ratings were generally correlated among approaches, we documented important discrepancies. The review approach required little effort but often inaccurately estimated impact in our study region (Mid-Atlantic United States). Game fishes received lower ratings from the socioeconomic approach, which yielded the greatest consistency among respondents. The ecological approach exhibited lower respondent bias but was sensitive to pre-existing perceptions of high-impact invaders. The abundance approach provided the least-biased assessment of region-specific impact but did not account for differences in per-capita effects among species. The collection approach required the most effort and did not provide reliable estimates of impact. Multiple approaches to assessing a species’ impact are instructive, but impact ratings must be interpreted in the context of methodological strengths and weaknesses and key management issues. A combination of our ecological and abundance approaches may be most appropriate for assessing ecological impact, whereas our socioeconomic approach is more useful for understanding social dimensions. These approaches are readily transferrable to other regions and taxa; if refined, they can help standardize the assessment of impacts of nonnative species.

Environmental Management↗
USGS2022

Permafrost and climate change: Carbon cycle feedbacks from the warming Arctic

Rapid Arctic environmental change affects the entire Earth system as thawing permafrost ecosystems release greenhouse gases to the atmosphere. Understanding how much permafrost carbon will be released, over what time frame, and what the relative emissions of carbon dioxide and methane will be is key for understanding the impact on global climate. In addition, the response of vegetation in a warming climate has the potential to offset at least some of the accelerating feedback to the climate from permafrost carbon. Temperature, organic carbon, and ground ice are key regulators for determining the impact of permafrost ecosystems on the global carbon cycle. Together, these encompass services of permafrost relevant to global society as well as to the people living in the region and help to determine the landscape-level response of this region to a changing climate.

Annual Review of Earth Science↗
USGS2004

A review of models and micrometeorological methods used to estimate wetland evapotranspiration

Within the past decade or so, the accuracy of evapotranspiration (ET) estimates has improved due to new and increasingly sophisticated methods. Yet despite a plethora of choices concerning methods, estimation of wetland ET remains insufficiently characterized due to the complexity of surface characteristics and the diversity of wetland types. In this review, we present models and micrometeorological methods that have been used to estimate wetland ET and discuss their suitability for particular wetland types. Hydrological, soil monitoring and lysimetric methods to determine ET are not discussed. Our review shows that, due to the variability and complexity of wetlands, there is no single approach that is the best for estimating wetland ET. Furthermore, there is no single foolproof method to obtain an accurate, independent measure of wetland ET. Because all of the methods reviewed, with the exception of eddy covariance and LIDAR, require measurements of net radiation (Rn) and soil heat flux (G), highly accurate measurements of these energy components are key to improving measurements of wetland ET. Many of the major methods used to determine ET can be applied successfully to wetlands of uniform vegetation and adequate fetch, however, certain caveats apply. For example, with accurate Rn and G data and small Bowen ratio (??) values, the Bowen ratio energy balance method can give accurate estimates of wetland ET. However, large errors in latent heat flux density can occur near sunrise and sunset when the Bowen ratio ?? ??? - 1??0. The eddy covariance method provides a direct measurement of latent heat flux density (??E) and sensible heat flux density (II), yet this method requires considerable expertise and expensive instrumentation to implement. A clear advantage of using the eddy covariance method is that ??E can be compared with Rn-G H, thereby allowing for an independent test of accuracy. The surface renewal method is inexpensive to replicate and, therefore, shows particular promise for characterizing variability in ET as a result of spatial heterogeneity. LIDAR is another method that has special utility in a heterogeneous wetland environment, because it provides an integrated value for ET from a surface. The main drawback of LIDAR is the high cost of equipment and the need for an independent ET measure to assess accuracy. If Rn and G are measured accurately, the Priestley-Taylor equation can be used successfully with site-specific calibration factors to estimate wetland ET. The 'crop' cover coefficient (Kc) method can provide accurate wetland ET estimates if calibrated for the environmental and climatic characteristics of a particular area. More complicated equations such as the Penman and Penman-Monteith equations also can be used to estimate wetland ET, but surface variability and lack of information on aerodynamic and surface resistances make use of such equations somewhat questionable. ?? 2004 John Wiley and Sons, Ltd.

Hydrological Processes↗
USGS1995

Non-native animals on public lands

Non-native plants and animals have become part of our surroundings, in cities, agricultural areas, and wildlands. While there are many beneficial purposes for non-native animals, such as for food and sport hunting and as agricultural animals, the introduction of some has had major negative economic consequences (Palmer 1899), and adverse effects on native wildlife, plants, and habitats. The British ecologist Charles Elton, in a major review of introduced species, described the increasing number of invasions as constituting "one of the great historical convulsions in the world's flora and fauna" (Elton 1958, p. 31). Non-native species are significant problems on large areas of state and federal public lands, and areas set aside to protect native plant and animal communities are not immune to such harm. Science and conservation journals have devoted entire issues to the threats posed by non-native plants and animals in nature reserves (e.g., Usher et al. 1988). In a compilation of threats to U.S. national parks, non-native plants and animals were the most often reported threat, and were reported by the most areas; feral cats ( Felis catus ), feral dogs ( Canis familiaris ), and wild pigs ( Sus scrofa ) were the non-native animals cited most often (NPCA 1977). Non-native species present serious threats, but at the same time, coordinated efforts on public lands offer the best possibility for controlling some harmful non-native species, and protecting both native plant and animal communities and human interests and needs. We compiled information on non-native animals on public and private land-management areas by conducting a mail survey to assess their occurrence and management status in land-management areas. Survey results represent contributions from 937 national parks, national forests, national wildlife refuges, Bureau of Land Management field areas, and state and private land-management areas. The results reflect those species that land managers considered of greatest concern, and their general distribution on public lands. Non-native invertebrate animals, particularly forest insects and agricultural pests, cause severe economic and environmental damage as well (OTA 1993), but were not the focus of this survey.

Book chapter↗
USGS1998

Diatom paleoecology Pass Key core 37, Everglades National Park, Florida Bay

During the 20th century, there have been large-scale anthropogenic modifications to the South Florida ecosystem. The effects of these changes on Florida Bay and its biological communities are currently of political and scientific interest. This study is part of a larger effort to reconstruct the history of environmental changes in the bay, using paleoecological techniques. We are using diatom indicators preserved in Florida Bay sediments to infer long-term water quality, productivity, nutrient, and salinity changes. We are also obtaining information concerning the natural variability of the ecosystem. Diatoms are microscopic algae, the remains of which are generally well preserved in sediments, and their distributions are closely linked to water quality. Diatoms were extracted from a 70-cm sediment core collected from the Pass Key mudbank of Florida Bay by the U.S. Geological Survey. Between 300-500 diatom valves from each of 15 core samples were identified and counted. Estimates of absolute abundance, species richness, Shannon-Wiener diversity, and centric:pennate ratios were calculated for each sample that was counted. Information on the ecology of the diatom species is presented, and changes in diatom community composition are evaluated. Samples contained an average of four million diatom valves per gram of sediment. Major changes in the diatom community are evident down core. These include increases in the percent abundance of marine diatoms in the time period represented by the core, probably the result of increasing salinity at Pass Key. Benthic diatoms become less abundant in the top half of the core. This may be related to a number of factors including the die-off of sea grass beds or increased turbidity of the water column. Once the chronology of the Pass Key core 37 is established, these down-core changes can be related to historical events and compared with other indicators in the sedimentary record that are currently being investigated by U.S Geological Survey researchers. This report is preliminary and has not been reviewed for conformity with U.S. Geological Survey editorial standards or with the North American Stratigraphic Code. Any use of trade, product, or firm names is for descriptive purposes only and does not imply endorsement by the U.S. Government.

Open-File Report↗
USGS2011

BioData: A national aquatic bioassessment database

BioData is a U.S. Geological Survey (USGS) web-enabled database that for the first time provides for the capture, curation, integration, and delivery of bioassessment data collected by local, regional, and national USGS projects. BioData offers field biologists advanced capabilities for entering, editing, and reviewing the macroinvertebrate, algae, fish, and supporting habitat data from rivers and streams. It offers data archival and curation capabilities that protect and maintain data for the long term. BioData provides the Federal, State, and local governments, as well as the scientific community, resource managers, the private sector, and the public with easy access to tens of thousands of samples collected nationwide from thousands of stream and river sites. BioData also provides the USGS with centralized data storage for delivering data to other systems and applications through automated web services. BioData allows users to combine data sets of known quality from different projects in various locations over time. It provides a nationally aggregated database for users to leverage data from many independent projects that, until now, was not feasible at this scale. For example, from 1991 to 2011, the USGS Idaho Water Science Center collected more than 816 bioassessment samples from 63 sites for the National Water Quality Assessment (NAWQA) Program and more than 477 samples from 39 sites for a cooperative USGS and State of Idaho Statewide Water Quality Network (fig. 1). Using BioData, 20 years of samples collected for both of these projects can be combined for analysis. BioData delivers all of the data using current taxonomic nomenclature, thus relieving users of the difficult and time-consuming task of harmonizing taxonomy among samples collected during different time periods. Fish data are reported using the Integrated Taxonomic Information Service (ITIS) Taxonomic Serial Numbers (TSN's). A simple web-data input interface and self-guided, public data-retrieval web site provides access to bioassessment data. BioData currently accepts data collected using two national protocols: (1) NAWQA and (2) U.S. Environmental Protection Agency (USEPA) National Rivers and Streams Assessment (NRSA). Additional collection protocols are planned for future versions.

Fact Sheet↗
USGS2024

Effects of harmful algal blooms on amphibians and reptiles are under-reported and under-represented

Harmful algal blooms (HABs) are a persistent and increasing problem globally, yet we still have limited knowledge about how they affect wildlife. Although semi-aquatic and aquatic amphibians and reptiles have experienced large declines and occupy environments where HABs are increasingly problematic, their vulnerability to HABs remains unclear. To inform monitoring, management, and future research, we conducted a literature review, synthesized the studies, and report on the mortality events describing effects of cyanotoxins from HABs on freshwater herpetofauna. Our review identified 37 unique studies and 71 endpoints (no-observed-effect and lowest-observed-effect concentrations) involving 11 amphibian and 3 reptile species worldwide. Responses varied widely among studies, species, and exposure concentrations used in experiments. Concentrations causing lethal and sublethal effects in laboratory experiments were generally 1 to 100 µg/L, which contains the mean value of reported HAB events but is 70 times less than the maximum cyanotoxin concentrations reported in the environment. However, one species of amphibian was tolerant to concentrations of 10,000 µg/L, demonstrating potentially immense differences in sensitivities. Most studies focused on microcystin-LR (MC-LR), which can increase systemic inflammation and harm the digestive system, reproductive organs, liver, kidneys, and development. The few studies on other cyanotoxins illustrated that effects resembled those of MC-LR at similar concentrations, but more research is needed to describe effects of other cyanotoxins and mixtures of cyanotoxins that commonly occur in the environment. All experimental studies were on larval and adult amphibians; there were no such studies on reptiles. Experimental work with reptiles and adult amphibians is needed to clarify thresholds of tolerance. Only nine mortality events were reported, mostly for reptiles. Given that amphibians likely decay faster than reptiles, which have tissues that resist decomposition, mass amphibian mortality events from HABs have likely been under-reported. We propose that future efforts should be focused on seven major areas, to enhance our understanding of effects and monitoring of HABs on herpetofauna that fill important roles in freshwater and terrestrial environments. Environ Toxicol Chem 2024;00:1–14. Published 2024. This article is a U.S. Government work and is in the public domain in the USA. Environmental Toxicology and Chemistry published by Wiley Periodicals LLC on behalf of SETAC.

Environmental Toxicology and Chemistry↗
USGS2013

Methylmercury is the predominant form of mercury in bird eggs: a synthesis

Bird eggs are commonly used in mercury monitoring programs to assess methylmercury contamination and toxicity to birds. However, only 6% of >200 studies investigating mercury in bird eggs have actually measured methylmercury concentrations in eggs. Instead, studies typically measure total mercury in eggs (both organic and inorganic forms of mercury), with the explicit assumption that total mercury concentrations in eggs are a reliable proxy for methylmercury concentrations in eggs. This assumption is rarely tested, but has important implications for assessing risk of mercury to birds. We conducted a detailed assessment of this assumption by (1) collecting original data to examine the relationship between total and methylmercury in eggs of two species, and (2) reviewing the published literature on mercury concentrations in bird eggs to examine whether the percentage of total mercury in the methylmercury form differed among species. Within American avocets ( Recurvirostra americana ) and Forster’s terns ( Sterna forsteri ), methylmercury concentrations were highly correlated (R 2 = 0.99) with total mercury concentrations in individual eggs (range: 0.03–7.33 μg/g fww), and the regression slope (log scale) was not different from one (m = 0.992). The mean percentage of total mercury in the methylmercury form in eggs was 97% for American avocets (n = 30 eggs), 96% for Forster’s terns (n = 30 eggs), and 96% among all 22 species of birds (n = 30 estimates of species means). The percentage of total mercury in the methylmercury form ranged from 63% to 116% among individual eggs and 82% to 111% among species means, but this variation was not related to total mercury concentrations in eggs, foraging guild, nor to a species life history strategy as characterized along the precocial to altricial spectrum. Our results support the use of total mercury concentrations to estimate methylmercury concentrations in bird eggs.

Environmental Science & Technology↗
USGS2025

Ecological thresholds and transformations due to climate change: The role of abiotic stress

An ecological threshold is the point at which a comparatively small environmental change triggers an abrupt and disproportionately large ecological response. In the face of accelerating climate change, there is concern that abrupt ecosystem transformations will become more widespread as critical ecological thresholds are crossed. There has been ongoing debate, however, regarding the prevalence of ecological thresholds across the natural world. While ecological thresholds are ubiquitous in some ecosystems, thresholds have been difficult to detect in others. Some studies have even concluded that threshold responses are uncommon in the natural world and overly emphasized in the ecological literature. As ecologists who work in ecosystems chronically exposed to high abiotic stress, we consider ecological thresholds and ecosystem transformations to be critical concepts that can greatly advance understanding of ecological responses to climate change and inform ecosystem management. But quantifying ecological thresholds can be challenging, if not impossible, without data that are strategically collected for that purpose. Here, we present a conceptual framework built upon linkages between abiotic stress, climate-driven ecological threshold responses, and the risk of ecosystem transformation. We also present a simple approach for quantifying ecological thresholds across abiotic stress gradients. We hypothesize that climate-driven threshold responses are especially influential in ecosystems chronically exposed to high abiotic stress, where autotroph diversity is low and foundation species play a prominent ecological role. Abiotic conditions in these environments are often near physiological tolerance limits of foundation species, which means that small abiotic changes can trigger landscape-level ecological transformations. Conversely, the alleviation of stress near thresholds can allow foundation species to thrive and spread into previously inhospitable locations. We provide examples of this climate-driven threshold behavior from four high-stress environments: coastal wetlands, coral reefs, drylands, and alpine ecosystems. Our overarching aim in this review is to clarify the strong relationships between abiotic stress, climate-driven ecological thresholds, and the risk of ecosystem transformation under climate change.

Ecosphere↗
USGS2006

Predicting woodrat ( Neotoma ) responses to anthropogenic warming from studies of the palaeomidden record

Aim The influence of anthropogenic climate change on organisms is an area of great scientific concern. Increasingly there is recognition that abrupt climate transitions have occurred over the late Quaternary; studies of these shifts may yield insights into likely biotic responses to contemporary warming. Here, we review research undertaken over the past decade investigating the response of Neotoma (woodrats) body size and distribution to climate change over the late Quaternary (the last 40,000 years). By integrating information from woodrat palaeomiddens, historical museum specimens and field studies of modern populations, we identify potential evolutionary responses to climate change occurring over a variety of temporal and spatial scales. Specifically, we characterize climatic thresholds in the past that led to local species extirpation and/or range alterations rather than in situ adaptation, and apply them to anticipate potential biotic responses to anthropogenic climate change. Location Middens were collected at about 55 sites scattered across the western United States, ranging from about 34 to 46° N and about 104 to 116° W, respectively. Data for modern populations were drawn from studies conducted in Death Valley, California, Missoula, Montana and the Sevilleta LTER site in central New Mexico. Methods We analysed faecal pellets from midden series collected at numerous cave sites across the western United States. From these we estimated body mass using techniques validated in earlier studies. We compared body size fluctuations at different elevations in different regions and integrated these results with studies investigating temperature–body size tradeoffs in modern animals. We also quantify the rapidity of the size changes over the late Quaternary to estimate the evolutionary capacity of woodrats to deal with predicted rates of anthropogenic climate change over the next century. Results We find remarkable similarities across the geographical range to late Quaternary climate change. In the middle of the geographical range woodrats respond in accordance to Bergmann's rule: colder climatic conditions select for larger body size and warmer conditions select for smaller body size. Patterns are more complicated at range boundaries, and local environmental conditions influence the observed response. In general, woodrat body size fluctuates with approximately the same amplitude and frequency as climate; there is a significant and positive correlation between woodrat body size and generalized climate proxies (such as ice core records). Woodrats have achieved evolutionary rates of change equal to or greater than those needed to adapt in situ to anthropogenic climate change. Main conclusions In situ body size evolution is a likely outcome of climate change, and such shifts are part of a normal spectrum of adaptation. Woodrats appear to be subject to ongoing body size selection in response to fluctuating environmental conditions. Allometric considerations suggest that these shifts in body size lead to substantial changes in the physiology, life history and ecology of woodrats, and on their direct and indirect interactions with other organisms in the ecosystem. Our work highlights the importance of a finely resolved and long-term record in understanding biotic responses to climatic shifts.

Journal of Biogeography↗