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At least 919 records · Page 51Linked to original sources

Synchrotron radiation and its application to digital subtraction angiography

The intense synchrotron radiation produced at electron storage rings provides a new source of X-rays highly suited to iodine K-edge digital subtraction angiography. The high intensity and small angular divergence permit the radiation to be monochromatized by Bragg diffraction and made available in beams of small vertical size, of arbitrary horizontal width, and of tunable energy. The use of such beams provides maximum sensitivity to intra-arterial iodine and virtually eliminates image contrast due to non-vascular body structures. The sensitivity of this method to iodine offers the prospect of visualizing arteries by peripheral venous injection.

Conference Paper↗

Grain size-sensitive creep in ice II

Rheological experiments on fine-grained water ice II at low strain rates reveal a creep mechanism that dominates at conditions of low stress. Using cryogenic scanning electron microscopy, we observed that a change in stress exponent from 5 to 2.5 correlates strongly with a decrease in grain size from about 40 to 6 micrometers. The grain size-sensitive creep of ice II demonstrated here plausibly dominates plastic strain at the low-stress conditions in the interior of medium- to large-sized icy moons of the outer solar system.

Science↗

Arsenic(III) fuels anoxygenic photosynthesis in hot spring biofilms from Mono Lake, California

Phylogenetic analysis indicates that microbial arsenic metabolism is ancient and probably extends back to the primordial Earth. In microbial biofilms growing on the rock surfaces of anoxic brine pools fed by hot springs containing arsenite and sulfide at high concentrations, we discovered light-dependent oxidation of arsenite [As(III)] to arsenate [As(V)] occurring under anoxic conditions. The communities were composed primarily of Ectothiorhodospira-like purple bacteria or Oscillatoria-like cyanobacteria. A pure culture of a photosynthetic bacterium grew as a photoautotroph when As(III) was used as the sole photosynthetic electron donor. The strain contained genes encoding a putative As(V) reductase but no detectable homologs of the As(III) oxidase genes of aerobic chemolithotrophs, suggesting a reverse functionality for the reductase. Production of As(V) by anoxygenic photosynthesis probably opened niches for primordial Earth's first As(V)-respiring prokaryotes.

Science↗

Absence of neutral alkali atoms in rhodizite

The formula CsB 12 Be 4 Al 4 O 28 has been proposed by others for the mineral rhodizite. Electron-spin-resonance and magnetic susceptibility measurements prove the absence of neutral cesium atoms. An ionic formula CsB 11 Be 4 Al 4 O 26 (OH) 2 is proposed.

Science↗

Rapid methods of determining cooling rates of iron and stony iron meteorites

Two rapid and simple methods have been developed for determining the approximate cooling rates of iron and stony-iron meteorites in which kamacite formed by diffusion-controlled growth along planar fronts. The first method requires only measurements of the mean kamacite bandwidth and the bulk nickel content. The second method requires the determination of the nickel composition near the taenite-kamacite interface with an electron microprobe.

Science↗

Shock effects in certain rock-forming minerals

Shock effects in quartz, plagioclase, biotite, amphibole, and some accessory minerals have been observed in rocks subjected to various degrees of meta morphism by meteoritic impact. The shock features described are unique; they are never observed in rocks from normal geologic environments. Such features are described: 1) Multiple sets of closely spaced planar microstructures occur in quartz, plagioclase, and other rock-forming minerals. Those characteristic of shock consist of alternating platelets, with a range of reduced mean index of re fraction and birefringence; they con sist of platelets that have been partially or completely transformed to an amor phous phase. 2) Quartz and plagioclase are selec tively and completely transformed to silica glass and plagioclase glass in the solid state, whereas the associated mafic minerals remained crystalline. There is no reaction between adjacent minerals. 3) High-pressure polymorphs occur, such as coesite or stishovite. Coesite oc Curs exclusively within silica glass; it has not been observed as a reaction or breakdown product. 4) Nickel-iron spherules occur in the fused glass or impactites. 5) The occurrence of droplets of ilmenite, rutile, pseudobrookite, and baddaleyite in impactites indicates a temperature of formation exceeding 150°C. 6) Dense glass occurs, similar in composition to bulk rock, in which iron oxide, such as fine particles of mag netite, is completely dissolved. All these features are characteristic of a process involving the rapid rise and fall of extremiiely high pressures and temperatures. Minerals and mineral as semblages experiencing such high strain rates and sudden changes of pressures and temperatures react and change in dependently to the bulk chemical com position, under nonequilibrium condi tions. Many aspects of shock features re quire careful study. Kink bands in biotite and deformation lamellae in quartz occur in tectonically deformed rocks. These features should be studied with great care in order to determine whether reduction in mean index of refraction and total birefringence along the planar structures have resulted from vitrification or phase transition; their presence is additional evidence in favor of a shock mechanism. Vitreous phases or glasses formed by shock also have many unique prop erties; they have not been studied by such methods as thermoluminescence, electron spin resonance, low-angle x ray diffraction, or infrared spectroscopy. Shock-fused glass of high density needs to be studied in detail in carefully con trolled laboratory conditions. Experimental shock-wave studies of the equation-of-state of single minerals and mineral assemblages, under care fully controlled conditions, must pre cede estimates of peak pressures and peak and residual temperatures of shocked natural mineral assemblages. Detailed petrographic and mineralogic studies, however, have provided useful and definitive criteria for characteriza tion of impact events. Such data should be of paramount importance in the study of samples brought back from Moon.

Science↗

Exsolution in clinoamphiboles

Ten amphibole specimens from a variety of metamorphic rocks such as talc schists, eclogites, and metamorphosed iron formations contain lamellae of a second amphibole oriented parallel to (1̅01) or (100), or both, of the host. Tremolites, actinolites, and hornblendes commonly have lamellae of a calcium-poor clinoamphibole with P 2 1 / m space-group symmetry, or lamellae of cummingtonite with C 2/ m space-group symmetry. Likewise cummingtonites and P 2 1 / m clinoamphiboles commonly contain lamellae of calcium-rich C 2/ m amphiboles such as tremolite. Results of x-ray diffraction, electron-probe, and microscope studies indicate that most lamellae result from unmixing of a homogeneous amphibole. The P 2 1 / m clinoamphibole is analogous to the clinopyroxene pigeonite in agreement with the results of M. G. Bown.

Science↗

Shock-produced olivine glass: First observation

Transmission electron microscope (TEM) observations of an experimentally shock-deformed single crystal of natural peridot, (Mg 0.88 Fe 0.12 ) 2 SiO 4 , recovered from peak pressures of about 56 × 10 9 pascals revealed the presence of amorphous zones located within crystalline regions with a high density of tangled dislocations. This is the first reported observation of olivine glass. The shocked sample exhibits a wide variation in the degree of shock deformation on a small scale, and the glass appears to be intimately associated with the highest density of dislocations. This study suggests that olivine glass may be formed as a result of shock at pressures above about 50 to 55 × 10 9 pascals and that further TEM observations of naturally shocked olivines may demonstrate the presence of glass.

Science↗

Variable porosity in siliceous skeletons: Determination and importance

Gas adsorption data were used to obtain the specific surface area and specific pore volume for a variety of biogenically precipitated silica samples. The results suggest that this material is finely divided and porous. This interpretation was corroborated by the use of transmission electron microscopy at magnifications up to 180,000.

Science↗

Antiphase domains and reverse thermoremanent magnetism in ilmenite-hematite minerals

Examination of synthetic ilmenite-hematite samples by transmission electron microscopy has for the first time revealed the presence of well-defined antiphase domains and antiphase domain boundaries in this mineral system. Samples quenched from 1300°C have a high density of domain boundaries, whereas samples quenched from 900°C have a much lower density. Only the high-temperature samples acquire reverse thermoremanent magnetism when cooled in an applied magnetic field. The presence of a high density of domain boundaries seems to be a necessary condition for the acquisition of reverse thermoremanent magnetism.

Science↗

An occurrence of metastable cristobalite in high-pressure garnet Granulite

High-pressure (0.8 gigapascals) granulite facies garnet from Gore Mountain, New York, hosts multiple solid inclusions containing the low- pressure silica polymorph cristobalite along with albite and minor ilmenite. Identification of cristobalite is based on Raman spectra, electron microprobe analysis, and microthermometric measurements on the ??/?? phase transformation. The cristobalite plus albite inclusions may have originated as small, trapped samples of hydrous sodium-aluminum-siliceous melt. Diffusive loss of water from these inclusions under isothermal, isochoric conditions may have resulted in a large enough internal pressure decrease to promote the metastable crystallization of cristobalite.

Science↗

Element partitioning in magnetite under low-grade metamorphic conditions – A case study from the Proterozoic Belt Supergroup, USA

The distribution and partitioning of elements in igneous rocks is well established for various melt –(fluid) –solid pairs and provides important insights into the petrogenesis of these rocks. Studies of the partitioning behavior of elements under metamorphic conditions are scarce and commonly focus on high-grade metamorphic facies. Little is known about the partitioning behavior of elements under low-grade metamorphic conditions. Greenschist-facies metasedimentary rocks of the North American Belt Supergroup host magnetite that displays equilibrium features with co-existing mineral phases such as quartz and carbonate. Magnetite is an ideal target for geochemical investigations because it can incorporate a large number of cations and is sensitive to changes in temperature, oxygen fugacity, pressure, whole-rock composition, and cooling trends. Whole-rock major and trace element analyses have been undertaken on representative samples from Belt Supergroup metasedimentary rocks using X-ray luorescence. Electron microprobe and laser ablation ICP-MS were used to obtain major and trace element concentrations for magnetite hosted in these rocks. Stable-isotope geothermometry of magnetite–quartz and magnetite–carbonate pairs constrain metamorphic temperatures to ca. 390°C. Partition coefficients (D) for magnetite–matrix pairs presumably reflect equilibrium at these low-grade metamorphic conditions. Except for Mn and Ni, which show comparable partition coefficients, the calculated values are one to two orders of magnitude lower than those for igneous magnetite. Aluminum displays the lowest calculated partition coefficient with a value of 0.006 and Ni and Fe the highest values with 6.3 and 20.9, respectively. Of the elements that commonly occur in spinel-group minerals, two groups can be distinguished: (1) elements that preferentially partition into the host rock (D<1): Al, Mg, Pb, and Ti and (2) elements that show a preference to partition into magnetite (D>1): Zn, Mn, Cr, V, Ni, and Fe.

European Journal of Mineralogy↗

Overview of issues in subsurface and landfill microbiology

To date, the majority of evidence indicates that most subsurface environments possess climax ecological communities that are well adapted to the environment in which they live. Like their counterparts on the surface, subsurface ecosystems are characterized by a high degree of microbiological diversity, they possess trophic structure, and they exhibit material cycling and energy transfer. Members of such ecosystems typically possess structural, physiological, or reproductive adaptations that allow them to disperse and survive in such habitats. Current studies argue that microbial activities influence the geochemical processes in both landfills and subsurface environments and that the altered geochemistry, in turn, influences the selection of microorganisms proliferating in the habitat. However, while microbial activity may often be limited by the availability of electron donors in uncontaminated aquifer systems, this is rarely the case with landfills. Sections in this chapter provide investigators with a greater understanding of the experimental approaches needed to study the microbiology of the terrestrial subsurface and an appreciation of interpretational limits imposed by the existing methodologies. The hope is that further study of subsurface microorganisms will provide insights into the process of microbial evolution and possibly into the origins of life itself.

Book chapter↗

Comparative assessment of a restored and natural wetland using 13C-DNA SIP reveals a higher potential for methane production in the restored wetland

Wetlands are the largest natural source of methane (CH 4 ), a potent greenhouse gas produced by methanogens. Methanogenesis rates are controlled by environmental factors such as redox potential, temperature, and carbon and electron acceptor availability and are presumably dependent on the composition of the active methanogen community. We collected intact soil cores from a restored and natural freshwater depressional wetland on Maryland’s Delmarva Peninsula (USA) to assess the effects of wetland restoration and redox shifts on microbial processes. Intact soil cores were incubated under either saturated (anoxic) or unsaturated (oxic) conditions and amended with 13 C-acetate for quantitative stable isotope probing (qSIP) of the 16S rRNA gene. Restored wetland cores supported a distinct community of methanogens compared to natural cores, and acetoclastic methanogens putatively identified in the genus Methanosarcina were among the most abundant taxa in restored anoxic and oxic cores. The active microbial communities in the restored wetland cores were also distinguished by the unique presence of facultatively anaerobic bacteria belonging to the orders Firmicutes and Bacteroidetes . In natural wetland incubations, methanogen populations were not among the most abundant taxa, and these communities were instead distinguished by the unique presence of aerobic bacteria in the phyla Acidobacteria , Actinobacteria , and class Alphaproteobacteria . Iron-reducing bacteria, in the genus Geobacter , were active across all redox conditions in both the restored and the natural cores, except the natural oxic–anoxic condition. These findings suggest an overall higher potential for methanogenesis in the restored wetland site compared to the natural wetland site, even when there is evidence of Fe reduction.

Maryland↗

Methane-producing microbial community in a coal bed of the Illinois Basin

A series of molecular and geochemical studies were performed to study microbial, coal bed methane formation in the eastern Illinois Basin. Results suggest that organic matter is biodegraded to simple molecules, such as H 2 and CO2, which fuel methanogenesis and the generation of large coal bed methane reserves. Small-subunit rRNA analysis of both the in situ microbial community and highly purified, methanogenic enrichments indicated that Methanocorpusculum is the dominant genus. Additionally, we characterized this methanogenic microorganism using scanning electron microscopy and distribution of intact polar cell membrane lipids. Phylogenetic studies of coal water samples helped us develop a model of methanogenic biodegradation of macromolecular coal and coal-derived oil by a complex microbial community. Based on enrichments, phylogenetic analyses, and calculated free energies at in situ subsurface conditions for relevant metabolisms (H2-utilizing methanogenesis, acetoclastic methanogenesis, and homoacetogenesis), H 2-utilizing methanogenesis appears to be the dominant terminal process of biodegradation of coal organic matter at this location. Copyright ?? 2008, American Society for Microbiology. All Rights Reserved.

Applied and Environmental Microbiology↗

Biological low pH Mn(II) oxidation in a manganese deposit influenced by metal-rich groundwater

The mechanisms, key organisms, and geochemical significance of biological low-pH Mn(II) oxidation are largely unexplored. Here, we investigated the structure of indigenous Mn(II)-oxidizing microbial communities in a secondary subsurface Mn oxide deposit influenced by acidic (pH 4.8) metal-rich groundwater in a former uranium mining area. Microbial diversity was highest in the Mn deposit compared to the adjacent soil layers and included the majority of known Mn(II)-oxidizing bacteria (MOB) and two genera of known Mn(II)-oxidizing fungi (MOF). Electron X-ray microanalysis showed that romanechite [(Ba,H 2 O) 2 (Mn 4+ ,Mn 3+ ) 5 O 10 ] was conspicuously enriched in the deposit. Canonical correspondence analysis revealed that certain fungal, bacterial, and archaeal groups were firmly associated with the autochthonous Mn oxides. Eight MOB within the Proteobacteria , Actinobacteria , and Bacteroidetes and one MOF strain belonging to Ascomycota were isolated at pH 5.5 or 7.2 from the acidic Mn deposit. Soil-groundwater microcosms demonstrated 2.5-fold-faster Mn(II) depletion in the Mn deposit than adjacent soil layers. No depletion was observed in the abiotic controls, suggesting that biological contribution is the main driver for Mn(II) oxidation at low pH. The composition and species specificity of the native low-pH Mn(II) oxidizers were highly adapted to in situ conditions, and these organisms may play a central role in the fundamental biogeochemical processes (e.g., metal natural attenuation) occurring in the acidic, oligotrophic, and metalliferous subsoil ecosystems.

Applied and Environmental Microbiology↗