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At least 901 records · Page 50Linked to original sources
USGS2017

Estimating evaporative fraction from readily obtainable variables in mangrove forests of the Everglades, U.S.A.

A remote-sensing-based model to estimate evaporative fraction (EF) – the ratio of latent heat (LE; energy equivalent of evapotranspiration –ET–) to total available energy – from easily obtainable remotely-sensed and meteorological parameters is presented. This research specifically addresses the shortcomings of existing ET retrieval methods such as calibration requirements of extensive accurate in situ micrometeorological and flux tower observations or of a large set of coarse-resolution or model-derived input datasets. The trapezoid model is capable of generating spatially varying EF maps from standard products such as land surface temperature ( T s ) normalized difference vegetation index (NDVI) and daily maximum air temperature ( T a ) . The 2009 model results were validated at an eddy-covariance tower (Fluxnet ID: US-Skr) in the Everglades using T s and NDVI products from Landsat as well as the Moderate Resolution Imaging Spectroradiometer (MODIS) sensors. Results indicate that the model accuracy is within the range of instrument uncertainty, and is dependent on the spatial resolution and selection of end-members (i.e. wet/dry edge). The most accurate results were achieved with the T s from Landsat relative to the T s from the MODIS flown on the Terra and Aqua platforms due to the fine spatial resolution of Landsat (30 m). The bias, mean absolute percentage error and root mean square percentage error were as low as 2.9% (3.0%), 9.8% (13.3%), and 12.1% (16.1%) for Landsat-based (MODIS-based) EF estimates, respectively. Overall, this methodology shows promise for bridging the gap between temporally limited ET estimates at Landsat scales and more complex and difficult to constrain global ET remote-sensing models.

International Journal of Remote Sensing↗
USGS2014

Genetic variation in bacterial kidney disease (BKD) susceptibility in Lake Michigan Chinook Salmon and its progenitor population from the Puget Sound

Mass mortality events in wild fish due to infectious diseases are troubling, especially given the potential for long-term, population-level consequences. Evolutionary theory predicts that populations with sufficient genetic variation will adapt in response to pathogen pressure. Chinook Salmon Oncorhynchus tshawytscha were introduced into Lake Michigan in the late 1960s from a Washington State hatchery population. In the late 1980s, collapse of the forage base and nutritional stress in Lake Michigan were thought to contribute to die-offs of Chinook Salmon due to bacterial kidney disease (BKD). Previously, we demonstrated that Lake Michigan Chinook Salmon from a Wisconsin hatchery have greater survival following BKD challenge relative to their progenitor population. Here, we evaluated whether the phenotypic divergence of these populations in BKD susceptibility was due to selection rather than genetic drift. Comparison of the overall magnitude of quantitative trait to neutral marker divergence between the populations suggested selection had occurred but a direct test of quantitative trait divergence was not significant, preventing the rejection of the null hypothesis of differentiation through genetic drift. Estimates of phenotypic variation (V P ), additive genetic variation (V A ) and narrow-sense heritability (h 2 ) were consistently higher in the Wisconsin relative to the Washington population. If selection had acted on the Wisconsin population there was no evidence of a concomitant loss of genetic variation in BKD susceptibility. The Renibacterium salmoninarum exposures were conducted at both 14°C and 9°C; the warmer temperature accelerated time to death in both populations and there was no evidence of phenotypic plasticity or a genotype-by-environment (G × E) interaction. High h 2 estimates for BKD susceptibility in the Wisconsin population, combined with a lack of phenotypic plasticity, predicts that future adaptive gains in BKD resistance are still possible and that these adaptive gains would be stable under the temperature range evaluated here.

Washington;Wisconsin↗
USGS1992

Sources of nonresponse to the Federal Waterfowl Hunter Questionnaire Survey

Response rates to the Federal Waterfowl Hunter Questionnaire Survey (WHQS) have declined since the 1950's, suggesting that harvest estimates may be biased. Consequently, we investigated reasons for WHQS nonresponse using surveys of waterfowl hunters in Arkansas, California, Louisiana, Minnesota, New Jersey, and Texas. Sampling frames were constructed using lists of buyers of state hunting licenses or state duck stamps. We mailed questionnaires to 16,452 randomly selected hunters, with 2 follow-up mailings at 3-week intervals. Questionnaires were completed by 8,812 respondents, and a further 587 interviews were conducted by telephone. Post offices accounted for between 53.7% (Minn.) and 92.8% (N.J.) of federal waterfowl duck stamp sales, and stores accounted for most other sales. Of hunters who bought a federal waterfowl stamp from sample post offices, between 16.7% (Minn.) and 40.0% (Ark.) reported receiving a WHQS contact card. Of those receiving contact cards, between 30.0% (N.J.) and 64.3% (La. and Tex.) reported returning them. Because survey coverage of the target population is poor, we recommend that a new sampling frame be developed for the WHQS.

Arkansas, California, Louisiana, Minnesota, New Je↗
USGS2012

Origin of an unusual monazite-xenotime gneiss, Hudson Highlands, New York: SHRIMP U-Pb geochronology and trace element geochemistry

A pod of monazite-xenotime gneiss (MXG) occurs within Mesoproterozoic paragneiss, Hudson Highlands, New York. This outcrop also contains granite of the Crystal Lake pluton, which migmatized the paragneiss. Previously, monazite, xenotime, and zircon from MXG, plus detrital zircon from the paragneiss, and igneous zircon from the granite, were dated using multi-grain thermal ionization mass spectrometry (TIMS). New SEM imagery of dated samples reveals that all minerals contain cores and rims. Thus TIMS analyses comprise mixtures of age components and are geologically meaningless. New spot analyses by sensitive high resolution ion microprobe (SHRIMP) of small homogeneous areas on individual grains allows deconvolution of ages within complexly zoned grains. Xenotime cores from MXG formed during two episodes (1034 ± 10 and 1014 ± 3 Ma), whereas three episodes of rim formation are recorded (999 ± 7, 961 ± 11, and 874 ± 11 Ma). Monazite cores from MXG mostly formed at 1004 ± 4 Ma; rims formed at 994 ± 4, 913 ± 7, and 890 ± 7 Ma. Zircon from MXG is composed of oscillatory-zoned detrital cores (2000-1170 Ma), plus metamorphic rims (1008 ± 7, 985 ± 5, and ∼950 Ma). In addition, MXG contains an unusual zircon population composed of irregularly-zoned elongate cores dated at 1036 ± 5 Ma, considered to be the time of formation of MXG. The time of granite emplacement is dated by oscillatory-zoned igneous cores at 1058 ± 4 Ma, which provides a minimum age constraint for the time of deposition of the paragneiss. Selected trace elements, including all REE plus U and Th, provide geochemical evidence for the origin of MXG. MREE-enriched xenotime from MXG are dissimilar from typical HREE-enriched patterns of igneous xenotime. The presence of large negative Eu anomalies and high U and Th in monazite and xenotime are uncharacteristic of typical ore-forming hydrothermal processes. We conclude that MXG is the result of unusual metasomatic processes during high grade metamorphism that was initiated at about 1035 Ma. This rock was then subjected to repeated episodes of dissolution/reprecipitation for about 150 m.y. during regional cooling of the Hudson Highlands.

New York↗
USGS2013

Rapid microsatellite marker development using next generation pyrosequencing to inform invasive Burmese python -- Python molurus bivittatus -- management

Invasive species represent an increasing threat to native ecosystems, harming indigenous taxa through predation, habitat modification, cross-species hybridization and alteration of ecosystem processes. Additionally, high economic costs are associated with environmental damage, restoration and control measures. The Burmese python, Python molurus bivittatus, is one of the most notable invasive species in the US, due to the threat it poses to imperiled species and the Greater Everglades ecosystem. To address population structure and relatedness, next generation sequencing was used to rapidly produce species-specific microsatellite loci. The Roche 454 GS-FLX Titanium platform provided 6616 di-, tri- and tetra-nucleotide repeats in 117,516 sequences. Using stringent criteria, 24 of 26 selected tri- and tetra-nucleotide loci were polymerase chain reaction (PCR) amplified and 18 were polymorphic. An additional six cross-species loci were amplified, and the resulting 24 loci were incorporated into eight PCR multiplexes. Multi-locus genotypes yielded an average of 61% (39%–77%) heterozygosity and 3.7 (2–6) alleles per locus. Population-level studies using the developed microsatellites will track the invasion front and monitor population-suppression dynamics. Additionally, cross-species amplification was detected in the invasive Ball, P. regius, and Northern African python, P. sebae. These markers can be used to address the hybridization potential of Burmese pythons and the larger, more aggressive P. sebae.

Florida↗
USGS1977

Miospore diversity and its relationship to lithology in the Coker Formation (Upper Cretaceous) of western Alabama

A multiple-regression procedure was applied to samples from two cores of the Coker Formation (Upper Cretaceous) of western Alabama in an attempt to characterize the relationship between the diversity of miospore species and selected lithologic factors. The resulting prediction equations suggest that the number of miospore species in these samples is inversely related to changes in median grain size and to other as yet undefined factors not reflected by lithology. In addition, it appears that the degree of sorting of the sediment has no effect on species diversity. A plot of these prediction equations shows that changes in the number of miospore species are negligible in samples of clay and silt size but that the number of species decreases rapidly in sediments of fine sand size or coarser. The results presented here agree with those presented by other workers for the relationship between grain size and the absolute abundance of miospores.

Alabama↗
USGS2015

Identifying priority chronic wasting disease surveillance areas for mule deer in Montana

Chronic wasting disease (CWD) is a fatal prion disease that affects a variety of ungulate species including mule deer ( Odocoileus hemionus ). As of 2014, no CWD cases had been reported in free-ranging ungulates in Montana. However, nearby cases in Canada, Wyoming, and the Dakotas indicated that the disease was encroaching on Montana's borders. Mule deer are native and common throughout Montana, and they represent a significant portion of the total hunter-harvested cervids in the state. The arrival of CWD in Montana may have significant ecosystem and socioeconomic impacts as well as potential consequences for wildlife management. We used 18,879 mule deer locations from 892 individual deer collected during 1975–2011 and modeled habitat selection for 7 herds in 5 of the 7 wildlife management regions in Montana. We estimated resource selection functions (RSF) in a Bayesian framework to predict summer and winter habitat preferences for mule deer. We estimated deer abundance from flyover counts for each region, and used the RSF predictions as weights to distribute the deer across the region. We then calculated the distance to the nearest known infected herds. We predicted areas of high risk of CWD infection in mule deer as areas with densities above the median density estimate and within the lowest quartile of distances to known infected herds. We identified these areas, the southeast corner of Montana and the north-central border near Alberta and Saskatchewan, as priority areas for CWD surveillance and management efforts.

Montana↗
USGS2003

Optimizing larval assessment to support sea lamprey control in the Great Lakes

Elements of the larval sea lamprey ( Petromyzon marinus ) assessment program that most strongly influence the chemical treatment program were analyzed, including selection of streams for larval surveys, allocation of sampling effort among stream reaches, allocation of sampling effort among habitat types, estimation of daily growth rates, and estimation of metamorphosis rates, to determine how uncertainty in each element influenced the stream selection program. First, the stream selection model based on current larval assessment sampling protocol significantly underestimated transforming sea lam-prey abundance, transforming sea lampreys killed, and marginal costs per sea lamprey killed, compared to a protocol that included more years of data (especially for large streams). Second, larval density in streams varied significantly with Type-I habitat area, but not with total area or reach length. Third, the ratio of larval density between Type-I and Type-II habitat varied significantly among streams, and that the optimal allocation of sampling effort varied with the proportion of habitat types and variability of larval density within each habitat. Fourth, mean length varied significantly among streams and years. Last, size at metamorphosis varied more among years than within or among regions and that metamorphosis varied significantly among streams within regions. Study results indicate that: (1) the stream selection model should be used to identify streams with potentially high residual populations of larval sea lampreys; (2) larval sampling in Type-II habitat should be initiated in all streams by increasing sampling in Type-II habitat to 50% of the sampling effort in Type-I habitat; and (3) methods should be investigated to reduce uncertainty in estimates of sea lamprey production, with emphasis on those that reduce the uncertainty associated with larval length at the end of the growing season and those used to predict metamorphosis.

Journal of Great Lakes Research↗
USGS2009

Arsenic in the evolution of earth and extraterrestrial ecosystems

If you were asked to speculate about the form extra-terrestrial life on Mars might take, which geomicrobial phenomenon might you select as a model system, assuming that life on Mars would be ‘primitive’? Give your reasons. At the end of my senior year at Rensselaer Polytechnic Institute in 1968, I took Professor Ehrlich's final for his Geomicrobiology course. The above question beckoned to me like the Sirens to Odysseus, for if I answered, it would take so much time and thought that I would never get around to the exam's other essay questions and consequently, would be “shipwrecked” by flunking the course. So, I passed it up. With this 41-year perspective in mind, this manuscript is now submitted to Professor Ehrlich for (belated) “extra-credit.” R.S. Oremland

Geomicrobiology Journal↗
USGS2014

Evolution of puma lentivirus in bobcats ( Lynx rufus ) and mountain lions ( Puma concolor ) in North America

Mountain lions ( Puma concolor ) throughout North and South America are infected with puma lentivirus clade B (PLVB). A second, highly divergent lentiviral clade, PLVA, infects mountain lions in southern California and Florida. Bobcats ( Lynx rufus ) in these two geographic regions are also infected with PLVA, and to date, this is the only strain of lentivirus identified in bobcats. We sequenced full-length PLV genomes in order to characterize the molecular evolution of PLV in bobcats and mountain lions. Low sequence homology (88% average pairwise identity) and frequent recombination (1 recombination breakpoint per 3 isolates analyzed) were observed in both clades. Viral proteins have markedly different patterns of evolution; sequence homology and negative selection were highest in Gag and Pol and lowest in Vif and Env. A total of 1.7% of sites across the PLV genome evolve under positive selection, indicating that host-imposed selection pressure is an important force shaping PLV evolution. PLVA strains are highly spatially structured, reflecting the population dynamics of their primary host, the bobcat. In contrast, the phylogeography of PLVB reflects the highly mobile mountain lion, with diverse PLVB isolates cocirculating in some areas and genetically related viruses being present in populations separated by thousands of kilometers. We conclude that PLVA and PLVB are two different viral species with distinct feline hosts and evolutionary histories.

North America↗
USGS2001

A standardized sampling protocol for channel catfish in prairie streams

Three alternative gears—an AC electrofishing raft, bankpoles, and a 15-hoop-net set—were used in a standardized manner to sample channel catfish Ictalurus punctatus in three prairie streams of varying size in three seasons. We compared these gears as to time required per sample, size selectivity, mean catch per unit effort (CPUE) among months, mean CPUE within months, effect of fluctuating stream stage, and sensitivity to population size. According to these comparisons, the 15-hoop-net set used during stable water levels in October had the most desirable characteristics. Using our catch data, we estimated the precision of CPUE and size structure by varying sample sizes for the 15-hoop-net set. We recommend that 11–15 repetitions of the 15-hoop-net set be used for most management activities. This standardized basic unit of effort will increase the precision of estimates and allow better comparisons among samples as well as increased confidence in management decisions.

Missouri↗
USGS2003

Planning and executing a lampricide treatment of the St. Marys River using georeferenced data

The St. Marys River is believed to be the primary source of sea lampreys (Petromyzon marinus) in Lake Huron. Planning or evaluating lampricide treatments required knowing where lampricides could effectively be placed and where larvae were located. Accurate maps of larval density were therefore critical to formulating or evaluating management strategies using lampricides. Larval abundance was systematically assessed with a deepwater electrofishing device at 12,000 georeferenced locations during 1993 to 1996. Maps were produced from catches at those locations, providing georeferenced detail previously unavailable. Catches were processed with a geographic information system (GIS), to create a map of larval density. Whole-river treatment scenarios using TFM (3-trifluoromethyl-4-nitrophenol) were evaluated by combining the map with one of lethal conditions predicted by a lampricide-transport model. The map was also used to evaluate spot treatment scenarios with a granular, bottom-release formulation of another lampricide, Bayluscide (2',5-dichloro-4'-nitro-salicylanilide). Potential high-density plots for Bayluscide treatment were selected from the map and estimates of area, cost, and larval population were developed using the GIS. Plots were ranked by the cost per larva killed. Spot treatments were found to be more cost effective than a conventional TFM treatment and Bayluscide was applied to 82 ha in 1998 and 759 ha in 1999. Effectiveness was estimated with stratified-random sampling before and after treatment in 1999 at 35%. Ten percent already had been removed in 1998, for a total reduction of 45% percent. This marked a change in how research and planning were combined in sea lamprey management to minimize treatment costs and evaluate success.

Journal of Great Lakes Research↗
USGS2010

Effect of concentration of dispersed organic matter on optical maturity parameters: Interlaboratory results of the organic matter concentration working group of the ICCP.

The main objective of this work was to study the effect of the kerogen isolation procedures on maturity parameters of organic matter using optical microscopes. This work represents the results of the Organic Matter Concentration Working Group (OMCWG) of the International Committee for Coal and Organic Petrology (ICCP) during the years 2008 and 2009. Four samples have been analysed covering a range of maturity (low and moderate) and terrestrial and marine geological settings. The analyses comprise random vitrinite reflectance measured on both kerogen concentrate and whole rock mounts and fluorescence spectra taken on alginite. Eighteen participants from twelve laboratories from all over the world performed the analyses. Samples of continental settings contained enough vitrinite for participants to record around 50 measurements whereas fewer readings were taken on samples from marine setting. The scatter of results was also larger in the samples of marine origin. Similar vitrinite reflectance values were in general recorded in the whole rock and in the kerogen concentrate. The small deviations of the trend cannot be attributed to the acid treatment involved in kerogen isolation but to reasons related to components identification or to the difficulty to achieve a good polish of samples with high mineral matter content. In samples difficult to polish, vitrinite reflectance was measured on whole rock tended to be lower. The presence or absence of rock fabric affected the selection of the vitrinite population for measurement and this also had an influence in the average value reported and in the scatter of the results. Slightly lower standard deviations were reported for the analyses run on kerogen concentrates. Considering the spectral fluorescence results, it was observed that the ??max presents a shift to higher wavelengths in the kerogen concentrate sample in comparison to the whole-rock sample, thus revealing an influence of preparation methods (acid treatment) on fluorescence properties. ?? 2010 Elsevier B.V.

International Journal of Coal Geology↗
USGS2005

The spectral irradiance of the moon

Images of the Moon at 32 wavelengths from 350 to 2450 nm have been obtained from a dedicated observatory during the bright half of each month over a period of several years. The ultimate goal is to develop a spectral radiance model of the Moon with an angular resolution and radiometric accuracy appropriate for calibration of Earth-orbiting spacecraft. An empirical model of irradiance has been developed that treats phase and libration explicitly, with absolute scale founded on the spectra of the star Vega and returned Apollo samples. A selected set of 190 standard stars are observed regularly to provide nightly extinction correction and long-term calibration of the observations. The extinction model is wavelength-coupled and based on the absorption coefficients of a number of gases and aerosols. The empirical irradiance model has the same form at each wavelength, with 18 coefficients, eight of which are constant across wavelength, for a total of 328 coefficients. Over 1000 lunar observations are fitted at each wavelength; the average residual is less than 1%. The irradiance model is actively being used in lunar calibration of several spacecraft instruments and can track sensor response changes at the 0.1% level. ?? 2005. The American Astronomical Society. All rights reserved.

Astronomical Journal↗
USGS1992

Functional response and capture timing in an individual-based model: predation by northern squawfish (Ptychocheilus oregonensis) on juvenile salmonids in the Columbia River

The behavior of individual northern squawfish ( Ptychocheilus oregonensis ) preying on juvenile salmonids was modeled to address questions about capture rate and the timing of prey captures (random versus contagious). Prey density, predator weight, prey weight, temperature, and diel feeding pattern were first incorporated into predation equations analogous to Holling Type 2 and Type 3 functional response models. Type 2 and Type 3 equations fit field data from the Columbia River equally well, and both models predicted predation rates on five of seven independent dates. Selecting a functional response type may be complicated by variable predation rates, analytical methods, and assumptions of the model equations. Using the Type 2 functional response, random versus contagious timing of prey capture was tested using two related models. ln the simpler model, salmon captures were assumed to be controlled by a Poisson renewal process; in the second model, several salmon captures were assumed to occur during brief "feeding bouts", modeled with a compound Poisson process. Salmon captures by individual northern squawfish were clustered through time, rather than random, based on comparison of model simulations and field data. The contagious-feeding result suggests that salmonids may be encountered as patches or schools in the river.

Canadian Journal of Fisheries and Aquatic Sciences↗
USGS1966

Breeding ecology of the redhead duck in western Montana

The habits of the redhead duck ( Aythya americana ) were studied in the Flathead Valley of western Montana in 1960 and 1961 to determine their habitat preferences in this pothole breeding ground. The 2,600-acre study area, surrounding the Ninepipe Reservoir, contained 686 potholes. Redheads usually were paired by the time they arrived on the study area in March. The average density of redhead breeding pairs was 25 pairs per square mile. For all spring activities except nesting, the birds used large, deep, open potholes or breeding-pair potholes. The several breeding-pair potholes and the nesting pothole utilized by the pair comprised their home range. Starting in late April, the pairs moved about the home range as the hens selected nesting sites, usually in the dense emergent vegetation of small, shallow potholes. Hard-stem bulrush ( Scirpus acutus ) and cat-tail ( Typha latifolia ) were preferred nesting cover. Redhead nesting success was only 15 percent, a low rate apparently caused by degenerate nesting behavior complicated by high redhead density, a lack of suitable nest hosts, and certain habitat deficiencies. By late June most drakes and unsuccessful hens had moved from the potholes to nearby reservoirs. All successful hens led their newly hatched broods from the nesting potholes to larger brood potholes and many eventually moved to the reservoir. By mid-July virtually all redheads had moved from the potholes to the reservoirs, where they remained until fall migration.

Montana↗
USGS1975

Some nutritional aspects of reproduction in prairie nesting pintails

The nutritional significance of invertebrate foods in the diet of breeding hen waterfowl during the period of egg formation is discussed. Proximate, elemental, and amino acid analyses of the principal foods consumed by hen pintails ( Anas acut ) during the nesting season indicate the animal foods selected are rich sources of protein and calcium, whereas plant foods tested were low in protein, particularly in the essential amino acids lysine and methionine. Calcium content in major plant foods was far below needs considered adequate for egg production. Studies with penned, hand-reared pintails indicated the inadequacy of wheat as the dietary staple during breeding. Egg production among pairs on the control diet differed significantly from that of the wheat plus oystershell (P < 0.05) and wheat (P < 0.01) diets. Pairs fed wheat during the breeding period experienced nearly complete reproductive failure. The poor reproductive response among hens on the diet of wheat plus oystershell suggested that calcium availability was not the only factor limiting productivity.

Journal of Wildlife Management↗
USGS2011

Northern goshawk monitoring in the western Great Lakes bioregion

Uncertainties about factors affecting Northern Goshawk ( Accipiter gentilis ) ecology and the status of populations have added to the challenge of managing this species. To address data needs for determining the status of goshawk populations, Hargis and Woodbridge (2006) developed a bioregional monitoring protocol based on estimating occupancy. The goal of our study was to implement this protocol and collect data to determine goshawk population status in the western Great Lakes (WGL) bioregion, which encompasses portions of Minnesota, Wisconsin, and Michigan, and is a mixture of private and public property. We used 366 goshawk nest locations obtained between 1979 and 2006 throughout the WGL bioregion to develop a model of landscape use consisting of forest canopy cover and land-cover covariates. We then used the model to develop a stratified sampling design for selecting 600-ha Primary Sampling Units (PSUs) to survey for goshawks. Project collaborators surveyed 86 PSUs for goshawk presence using broadcasted calls twice between mid-May and mid-August 2008, and recorded 30 goshawk detections in 21 different PSUs. Seventy-four percent of detections occurred at call stations with canopy closure >75%. Goshawk detection probabilities were 0.549 ± 0.118 (standard error) for the first visit to PSUs and 0.750 ± 0.126 for the second visit. We estimated the proportion of PSUs occupied by goshawks as 0.266 ± 0.047, which corresponded to 5184 ± 914 PSUs occupied by goshawks in our study area and suggested that goshawks are widely, but sparsely, distributed throughout the WGL bioregion.

Michigan, Minnesota, Wisconsin↗