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Accuracies achieved in classifying five leading world crop types and their growth stages using optimal Earth Observing-1 Hyperion hyperspectral narrowbands on Google Earth Engine

As the global population increases, we face increasing demand for food and nutrition. Remote sensing can help monitor food availability to assess global food security rapidly and accurately enough to inform decision-making. However, advances in remote sensing technology are still often limited to multispectral broadband sensors. Although these sensors have many applications, they can be limited in studying agricultural crop characteristics such as differentiating crop types and their growth stages with a high degree of accuracy and detail. In contrast, hyperspectral data contain continuous narrowbands that provide data in terms of spectral signatures rather than a few data points along the spectrum, and hence can help advance the study of crop characteristics. To better understand and advance this idea, we conducted a detailed study of five leading world crops (corn, soybean, winter wheat, rice, and cotton) that occupy 75% and 54% of principal crop areas in the United States and the world respectively. The study was conducted in seven agroecological zones of the United States using 99 Earth Observing-1 (EO-1) Hyperion hyperspectral images from 2008–2015 at 30 m resolution. The authors first developed a first-of-its-kind comprehensive Hyperion-derived Hyperspectral Imaging Spectral Library of Agricultural crops (HISA) of these crops in the US based on USDA Cropland Data Layer (CDL) reference data. Principal Component Analysis was used to eliminate redundant bands by using factor loadings to determine which bands most influenced the first few principal components. This resulted in the establishment of 30 optimal hyperspectral narrowbands (OHNBs) for the study of agricultural crops. The rest of the 242 Hyperion HNBs were redundant, uncalibrated, or noisy. Crop types and crop growth stages were classified using linear discriminant analysis (LDA) and support vector machines (SVM) in the Google Earth Engine cloud computing platform using the 30 optimal HNBs (OHNBs). The best overall accuracies were between 75% to 95% in classifying crop types and their growth stages, which were achieved using 15–20 HNBs in the majority of cases. However, in complex cases (e.g., 4 or more crops in a Hyperion image) 25–30 HNBs were required to achieve optimal accuracies. Beyond 25–30 bands, accuracies asymptote. This research makes a significant contribution towards understanding modeling, mapping, and monitoring agricultural crops using data from upcoming hyperspectral satellites, such as NASA’s Surface Biology and Geology mission (formerly HyspIRI mission) and the recently launched HysIS (Indian Hyperspectral Imaging Satellite, 55 bands over 400–950 nm in VNIR and 165 bands over 900–2500 nm in SWIR), and contributions in advancing the building of a novel, first-of-its-kind global hyperspectral imaging spectral-library of agricultural crops (GHISA: www.usgs.gov/WGSC/GHISA).

Remote Sensing↗

American Recent Eulipotyphla: Nesophontids, Solenodons, Moles, and Shrews in the New World

The mammalian taxonomic order Eulipotyphla is comprised of the living taxonomic families Erinaceidae (gymnures, hedgehogs, and moonrats), Solenodontidae (solenodonts), Soricidae (shrews), and Talpidae (desmans and moles). Morphological and molecular studies continue to alter our view of relationships within and among these families, and this research has added considerably to our understanding of the diversity, distributions, and relationships of many of the New World species that belong to them. Currently, there are more than 450 recognized living species worldwide, making the Eulipotyphla the third most speciose order of mammals. New World (North and South America and associated islands) eulipotyphlans currently include 110 recognized species of shrews, seven species of moles, and both living species of solenodons. In this work, I attempt to summarize the taxonomic results of recent studies and provide a guide to the most appropriate current applications of taxonomic names in this region.

Book↗

Snake species of the world: A taxonomic and geographic reference. v. 1

Given the absence of a current source on snake diversity and nomenclature and the expressed global need to understand better the diversity of our biota, we think that a catalogue of the world snake fauna complete with synonymies at the familial, generic, and specific levels is essential. We provide that here beginning with publication of the first volume. This compendium will facilitate comparative studies on the ecology, genetics, and behavior of snakes and, we hope, contribute to their conservation. At the very least, this work, when completed, will provide a readily available reference to the current taxonomic statuses and geographic distributions of snakes on a global scale. No comprehensive, up-to-date catalogue of snake species exists, and it is obvious that a detailed and inclusive treatment is long overdue. Snake Species of the World provides a comprehensive treatment of 31 families, 450 genera, and more than 2500 species of living snakes. The magnitude of the compilation requires publication in several volumes. This volume, the first of three, covers 682 species. A primary goal of this synthesis is to provide interested readers with a means for tracking scientific names that have been applied to a snake and determining the currently accepted name of that species. A secondary goal is to alert those interested in snakes as research subjects that in general many species are poorly known, that some have limited distributions, and that several are characterized by taxonomic problems.

Book↗

[Book review] A coded workbook of birds of the World, Vol. 1: Non-passerines (2 nd edition)

With a slight change in title, this is the second edition of Edwards' (1974) Coded List, from which it differs significantly. First, it covers only nonpasserines instead of all the birds of the world; presumably a list of the passerines will follow soon. The code is different, the format is expanded, and the information content is greater (3,798 species are listed as opposed to 3,656). This edition is clearly a new entry in the world-list field.

The Auk↗

Book review: The world of wolves: New perspectives on ecology

Wolf populations have proliferated in several areas and so have wolf books. The latest book is a good one. This compendium, The World of Wolves, covers a variety of fast-moving and controversial areas such as canid genetics, effects of wolves on ecosystems, climate change, hunting of wolves by snowmobile and non-lethal methods of minimizing livestock depredation. A great deal of new and interesting information resides in this book, far more than this review can cover. Several of the article authors are well experienced in their specialties: Luigi Boitani, Robert Wayne, Doug Smith, Rolf Peterson, Paul Paquet, Dean Cluff, and Olof Liberg along with numerous associates. The material reflects that. Review info: The world of wolves: New perspectives on ecology. Edited by M. Musiani, L. Boitani, and P. C. Paquet, 2011. ISBN: 9781552382691, 398 pp.

International Wolf↗

Trouble in the aquatic world: How wildlife professionals are battling amphibian declines

A parasitic fungus, similar to the one that caused the extinction of numerous tropical frog and toad species, is killing salamanders in Europe. Scientists first identified the fungus, Batrachochytrium salamandrivorans, in 2013 as the culprit behind the death of fire salamanders ( Salamandr a salamandra ) in the Netherlands ( Martel et al. 2013 ) and are now exploring its potential impact to other species. Although the fungus, which kills the amphibians by infecting their skin, has not yet spread to the United States, researchers believe it’s only a matter of time before it does and, when that happens, the impact on salamander populations could be devastating ( Martel et al. 2014 ). Reports of worldwide declines of amphibians began a quarter of a century ago ( Blaustein & Wake 1990 ). Globally, some amphibian population declines occurred in the late 1950s and early 1960s, and declining trends continued in North America ( Houlahan et al. 2000 ). In the earlier years, population declines were attributed primarily to overharvest due to unregulated supply of species such as the northern leopard frog ( Lithobate s pipiens ) for educational use ( Dodd 2013 ). In later years, however, causes of declines were less evident. In 1989, herpetologists at the First World Congress of Herpetology traded alarming stories of losses across continents and in seemingly protected landscapes, making it clear that amphibian population declines were a “global phenomenon.” In response to these reports, in 1991, the International Union for Conservation of Nature (IUCN) established the Declining Amphibian Populations Task Force to better understand the scale and scope of global amphibian declines. Unfortunately, the absence of long-term monitoring data and targeted studies made it difficult for the task force to compile information. Today, according to AmphibiaWeb.org, there are 7,342 amphibian species in the world — double the number since the first alerts of declines — making the situation appear deceptively less dire. In fact, our understanding of genetic diversity significantly raises the stakes, and we are at risk of losing far more species than we believed only a few years ago. According to the IUCN, amphibians now lead the list of vertebrate taxa affected by the larger “biodiversity crisis” and sixth major mass- extinction event on Earth ( Keith et al. 2014 , Wake and Vredenburg 2008 ).

The Wildlife Professional↗

Water in the world

The earth, Including Its oceans and atmosphere, ls a giant distillation system whose operation brings about the distribution of fresh water throughout the world, from the frozen wastes of polar regions to the burning equatorial deserts. Stated in the simplest terms, distillation, condensation and liquid flow are the elemental processes which, on a grand scale, distribute and circulate throughout the world the water which ls essential for all life. Water in liquid form absorbs heat energy, chiefly from the sun, and the absorbed energy changes the water from liquid to gaseous form. Transported in the atmosphere, the vapour later meets cooler conditions and condenses as precipitation, some of which replenishes the water in land areas. Because water is continually being transformed from liquid to vapour and back to liquid again, the whole sequence of events ends where It began. That ls, the condensed moisture in the form of precipitation runs Into or off the surface of the earth, and a part of It collects in rivers which flow to the ocean. The events together form what is called the hydrological cycle.

The UNESCO Courier↗

When worlds collide: challenges and opportunities for conservation of biodiversity in the Hawaiian Islands

This chapter identifies four key challenges and opportunities for long-term conservation of biodiversity in the Hawaii's Islands. Following are the challenges that need to be resolved for remaining species of native forest birds to survive into the next century: invasive species, landscape processes, social factors, and climate change. These challenges are also relevant to other threatened terrestrial taxonomic groups (i.e., plants and invertebrates) in the Hawaiian Islands. Such threats are familiar to conservation biologists the world over, but rarely do they act as synergistically as they do in the Hawaiian Islands. The chapter reviews conservation successes and failures in Hawaii, and provides an example of the possible future course of conservation in other island communities.

Hawai'i↗

Evaluation of the Liu model for predicting rainfall interception in forests world-wide

Simple but effective models are needed for the prediction of rainfall interception under a full range of environmental and management conditions. The Liu model was validated using data published in the literature and was compared with two leading models in the literature: the Rutter and the Gash models. The Liu model was tested against the Rutter model on a single-storm basis with interception measurements observed from an old-growth Douglas fir ( Pseudotsuga menziesii ) forest in Oregon, USA. Simulated results by the Liu model were close to the measurements and comparable to those predicted by the Rutter model. The Liu model was further tested against the Gash model on a multistorm basis. The Gash and Liu models successfully predicted long-term interception losses from a broad range of 20 forests around the world. Results also indicated that both the Gash and the Liu models could be used to predict rainfall interception using daily rainfall data, although it was assumed in both models that there is only one storm per rain day. The sensitivity of the Liu model to stand storage capacity, canopy gap fraction and evaporation rate from wet canopy surface during rainfall was investigated. Results indicate that the Liu model has the simplest form, least data requirements and comparable accuracy for predicting rainfall interception as compared with the Rutter and the Gash models.

Hydrological Processes↗

Selection, trans-species polymorphism, and locus identification of major histocompatibility complex class IIβ alleles of New World ranid frogs

Genes encoded by the major histocompatibility complex (MHC) play key roles in the vertebrate immune system. However, our understanding of the evolutionary processes and underlying genetic mechanisms shaping these genes is limited in many taxa, including amphibians, a group currently impacted by emerging infectious diseases. To further elucidate the evolution of the MHC in frogs (anurans) and develop tools for population genetics, we surveyed allelic diversity of the MHC class II ??1 domain in both genomic and complementary DNA of seven New World species in the genus Rana (Lithobates). To assign locus affiliation to our alleles, we used a "gene walking" technique to obtain intron 2 sequences that flanked MHC class II?? exon 2. Two distinct intron sequences were recovered, suggesting the presence of at least two class II?? loci in Rana. We designed a primer pair that successfully amplified an orthologous locus from all seven Rana species. In total, we recovered 13 alleles and documented trans-species polymorphism for four of the alleles. We also found quantitative evidence of selection acting on amino acid residues that are putatively involved in peptide binding and structural stability of the ??1 domain of anurans. Our results indicated that primer mismatch can result in polymerase chain reaction (PCR) bias, which influences the number of alleles that are recovered. Using a single locus may minimize PCR bias caused by primer mismatch, and the gene walking technique was an effective approach for generating single-copy orthologous markers necessary for future studies of MHC allelic variation in natural amphibian populations. ?? 2010 Springer-Verlag.

Immunogenetics↗

The conservation status of the world’s reptiles

Effective and targeted conservation action requires detailed information about species, their distribution, systematics and ecology as well as the distribution of threat processes which affect them. Knowledge of reptilian diversity remains surprisingly disparate, and innovative means of gaining rapid insight into the status of reptiles are needed in order to highlight urgent conservation cases and inform environmental policy with appropriate biodiversity information in a timely manner. We present the first ever global analysis of extinction risk in reptiles, based on a random representative sample of 1500 species (16% of all currently known species). To our knowledge, our results provide the first analysis of the global conservation status and distribution patterns of reptiles and the threats affecting them, highlighting conservation priorities and knowledge gaps which need to be addressed urgently to ensure the continued survival of the world’s reptiles. Nearly one in five reptilian species are threatened with extinction, with another one in five species classed as Data Deficient. The proportion of threatened reptile species is highest in freshwater environments, tropical regions and on oceanic islands, while data deficiency was highest in tropical areas, such as Central Africa and Southeast Asia, and among fossorial reptiles. Our results emphasise the need for research attention to be focussed on tropical areas which are experiencing the most dramatic rates of habitat loss, on fossorial reptiles for which there is a chronic lack of data, and on certain taxa such as snakes for which extinction risk may currently be underestimated due to lack of population information. Conservation actions specifically need to mitigate the effects of human-induced habitat loss and harvesting, which are the predominant threats to reptiles.

Biological Conservation↗

Book review: Bats: A world of science and mystery.

This book has something for everyone, from casual seekers of fascinating eye candy to professional scientists interested in the latest discoveries. Without losing sight of how mysterious bats remain despite decades of research, the authors deftly introduce readers to bats and the people who study them. The book is nice to look at, easy to understand, and interesting in many ways. These stories stick in the reader's memory long after being read—a sign of great scientific communication. Review info: Bats: A world of science and mystery. By M. Brock Fenton, Nancy B. Simmons (Eds.), 2015. ISBN 978-0226065120, 240 pp.

Biological Conservation↗

Utilization of multiple geochronology techniques to constrain the age of laterization and mineralization of the world-class Mount Weld rare earth element deposit, Western Australia

Pervasive chemical weathering on stable cratons may form thick regoliths and elemental enrichment, but constraining the age of regolith formation is challenging. In this study we utilize multiple geochronological techniques on different minerals from the world-class Mount Weld rare earth element (REE) deposit, formed by lateritic weathering of a carbonatite, to constrain the age of formation and provide insight into landscape evolution. The oldest dates, ca. 100 to 38 Ma, are from Lu-Hf dating of churchite [HREE(PO 4 )·2(H 2 O)], a heavy REE phosphate mineral. Growth bands on individual minerals show a younging outwards. 40 Ar/ 39 Ar geochronology of cryptomelane [K(Mn 4+ ,Mn 2+ )₈O₁₆] yielded dates from ca. 40 to 27 Ma. Similarly, (U-Th)/He geochronology of goethite [FeO(OH)] yielded dates ranging from ca. 45 to 19 Ma. Integrating results into regional constraints, suggests 1) churchite formed by mineral saturation in a karst-like setting below the water table from ca. 100 to 40 Ma, 2) with minor uplift and erosion, cryptomelane and goethite formed at or near the water table between ca. 45 and 19 Ma, 3) after ca. 15 to 10 Ma chemical weathering within the profile had ended. Other studies document that the region experienced minimal uplift and a wet, warm climate from ca. 100 Ma to 15 Ma. These conditions and the high carbonate content of the carbonatite promote extensive chemical weathering, a deep weathering profile, and the preservation of the weathered section. This study highlights the use of multiple geochronological techniques utilizing different minerals to provide insight into how laterites form and to constrain the timing and history of the formation of this important mineral deposit.

Western Australia↗

Valuing tourism to a historic World War II national memorial

This study contributes to the existing literature on valuing visitation to an important cultural heritage site. Pearl Harbor National Memorial in Hawaii remembers and honors those that served the United States in the Pacific battles of World War II. Although historic and cultural monuments and memorials comprise a substantial portion of the U.S. National Park System, there is little research into the economic benefits such sites provide to visitors. These benefits are a critical component of planning and management decisions based on an economic efficiency criterion. This study contributes to the literature by quantifying the economic value derived from visitation to Pearl Harbor National Memorial, home of the USS Arizona Memorial. Using data from a recent visitor survey, we explore the motivations for visiting the site and how such motivations may influence these values. These findings have significant implications, demonstrating a substantial return on the public's investment in a unique historic site and recent investments in maintaining the site for safety and an enhanced visitor experience.

Hawaii↗

Does taxonomic and numerical resolution affect the assessment of invertebrate community structure in New World freshwater wetlands?

The efficiency of biodiversity assessments and biomonitoring studies is commonly challenged by limitations in taxonomic identification and quantification approaches. In this study, we assessed the effects of different taxonomic and numerical resolutions on a range of community structure metrics in invertebrate compositional data sets from six regions distributed across North and South America. We specifically assessed the degree of similarity in the metrics (richness, equitability, beta diversity, heterogeneity in community composition and congruence) for data sets identified to a coarse resolution (usually family level) and the finest taxonomic resolution practical (usually genus level, sometimes species or morphospecies) and by presence-absence and relative abundance numerical resolutions. Spearman correlations showed highly significant and positive associations between univariate metrics (richness and equitability) calculated for coarse- and finest-resolution datasets. Procrustes analysis detected significant congruence between composition datasets. Higher correlation coefficients were found for datasets with the same numerical resolutions regardless of the taxonomic level (about 90%), while the correlations for comparisons across numerical resolutions were consistently lower. Our findings indicate that family-level resolution can be used as a surrogate of finer taxonomic resolutions to calculate a range of biodiversity metrics commonly used to describe invertebrate community structure patterns in New World freshwater wetlands without significant loss of information. However, conclusions on biodiversity patterns derived from datasets with different numerical resolutions should be critically considered in studies on wetland invertebrates.

California, Chubut, Georgia, Maine, North Dakota, ↗

Mangrove forests in a rapidly changing world: Global change impacts and conservation opportunities along the Gulf of Mexico coast

Mangrove forests are highly-productive intertidal wetlands that support many ecosystem goods and services. In addition to providing fish and wildlife habitat, mangrove forests improve water quality, provide seafood, reduce coastal erosion, supply forest products, support coastal food webs, minimize flooding impacts, and support high rates of carbon sequestration. Despite their tremendous societal value, mangrove forests are threatened by many aspects of global change. Here, we examine the effects of global change on mangrove forests along the Gulf of Mexico coast, which is a valuable region for advancing understanding of global change impacts because the region spans multiple ecologically-relevant abiotic gradients that are representative of other mangrove transition zones across the world. We consider the historical and anticipated future responses of mangrove forests to the following aspects of global change: temperature change, precipitation change, accelerated sea-level rise, tropical cyclone intensification, elevated atmospheric carbon dioxide, eutrophication, invasive non-native species, and land use change. For each global change factor, we provide an initial global perspective but focus primarily on the three countries that border the Gulf of Mexico: United States, Mexico, and Cuba. The interactive effects of global change can have large ecological consequences, and we provide examples that highlight their importance. While some interactions between global change drivers can lead to mangrove mortality and loss, others can lead to mangrove expansion at the expense of other ecosystems. Finally, we discuss strategies for using restoration and conservation to maximize the adaptive capacity of mangrove forests to global change. To ensure that the ecosystem goods and services provided by mangrove forests continue to be available for future generations, there is a pressing need to better protect, manage, and restore mangrove forests as well as the adjacent ecosystems that provide opportunities for adaptation in response to global change.

Estuarine, Coastal and Shelf Science↗