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At least 91 records · Page 5Linked to original sources

Why replication is important in landscape genetics: American black bear in the Rocky Mountains

We investigated how landscape features influence gene flow of black bears by testing the relative support for 36 alternative landscape resistance hypotheses, including isolation by distance (IBD) in each of 12 study areas in the north central U.S. Rocky Mountains. The study areas all contained the same basic elements, but differed in extent of forest fragmentation, altitude, variation in elevation and road coverage. In all but one of the study areas, isolation by landscape resistance was more supported than IBD suggesting gene flow is likely influenced by elevation, forest cover, and roads. However, the landscape features influencing gene flow varied among study areas. Using subsets of loci usually gave models with the very similar landscape features influencing gene flow as with all loci, suggesting the landscape features influencing gene flow were correctly identified. To test if the cause of the variability of supported landscape features in study areas resulted from landscape differences among study areas, we conducted a limiting factor analysis. We found that features were supported in landscape models only when the features were highly variable. This is perhaps not surprising but suggests an important cautionary note – that if landscape features are not found to influence gene flow, researchers should not automatically conclude that the features are unimportant to the species’ movement and gene flow. Failure to investigate multiple study areas that have a range of variability in landscape features could cause misleading inferences about which landscape features generally limit gene flow. This could lead to potentially erroneous identification of corridors and barriers if models are transferred between areas with different landscape characteristics.

Molecular Ecology↗

Characterization of sediment trapped by macroalgae on a Hawaiian reef flat

Reef researchers studying community shifts in the balance between corals and fleshy macroalgae have noted that algae are often covered with sediment. This study characterizes sediment trapping by macroalgae within a Hawaiian reef habitat and constrains the controls on this process. Sediment-laden macroalgae were sampled and macroalgal cover was assessed on a wide (???1 km) reef flat off south-central Molokai. Macroalgae trapped a mean of 1.26 (??0.91 SD) grams of sediment per gram of dry weight biomass and that sediment was dominantly terrigenous mud (59% by weight). It was determined that biomass, as a proxy for algal size, and morphology were not strict controls on the sediment trapping process. Over 300 metric tons of sediment were estimated to be retained by macroalgae across 5.75 km2 of reef flat (54 g m-2), suggesting that this process is an important component of sediment budgets. In addition, understanding the character of sediment trapped by macroalgae may help constrain suspended sediment flux and has implications for nutrient dynamics in reef flat environments. ?? 2005 Elsevier Ltd. All rights reserved.

Estuarine, Coastal and Shelf Science↗

Preface to book: Wetland carbon and environmental management

The idea for this book, including its organization and contents, has its origin in the latest environmental and climate policy requirements in the United States, as well as science advances. In 2007, the U.S. Congress passed the Energy Independence and Security Act (EISA), from which Section 712 required U.S. Federal agencies to provide a better understanding of carbon and greenhouse gas fluxes across the United States. As a result, largescale and coordinated efforts were launched to assess carbon storage, carbon fluxes, and greenhouse gas fluxes including CO2, CH4, and N2O from all major terrestrial and freshwater aquatic ecosystems, including forest, grassland/shrub, agricultural lands, wetlands, and rivers, streams, lakes, and impoundments. The EISA assessment produced major results (Selmants et al., 2017; Zhu, 2011; Zhu & McGuire, 2016; Zhu & Reed, 2012, 2014), but recognized that wetlands remained a significant source of uncertainty, especially for those wetlands that were being actively managed. The more recent Second State of the Carbon Cycle Report by the U.S. Global Change Research Program (USGCRP), which devoted two separate chapters to inland and coastal wetlands, respectively, noted that large knowledge gaps still remain, ranging from inadequate analysis of restored and managed wetlands, and consequences of management decisions, to future wetland responses to climate change (USGCRP, 2018). In recent literature, wetland management is suggested as a potential natural solution to mitigate climate change (Fargione et al., 2018, Kroeger et al., 2017) and help offset direct losses of wetlands from sea level rise, subsidence, and coastal erosion (Wang et al., 2017). The recognition that a synthesis of wetland carbon management was urgently needed was the genesis of Wetland Carbon and Environmental Management; discerning the relationships between wetland management and carbon flux (loss or gain) is an international goal.

Geophysical Monograph Series↗

Geologic field notes and geochemical analyses of outcrop and drill core from Mesoproterozoic rocks and iron-oxide deposits and prospects of southeast Missouri

The U.S. Geological Survey, in cooperation with the Missouri Department of Natural Resources/Missouri Geological Survey, undertook a study from 1988 to 1994 on the iron-oxide deposits and their host Mesoproterozoic igneous rocks in southeastern Missouri. The project resulted in an improvement of our understanding of the geologic setting, mode of formation, and the composition of many of the known deposits and prospects and the associated rocks of the St. Francois terrane in Missouri. The goal for this earlier work was to allow the comparison of Missouri iron-oxide deposits in context with other iron oxide-copper ± uranium (IOCG) types of mineral deposits observed globally. The raw geochemical analyses were released originally through the USGS National Geochemical Database (NGDB, http://mrdata.usgs.gov). The data presented herein offers all of the field notes, locations, rock descriptions, and geochemical analyses in a coherent package to facilitate new research efforts in IOCG deposit types. The data are provided in both Microsoft Excel (Version Office 2010) spreadsheet format (*.xlsx) and MS-DOS text formats (*.txt) for ease of use by numerous computer programs.

Missouri↗

Macracanthorhynchus ingens from raccoons in Maryland

There have been very few published records of the occurrence of the acanthocephalan parasite Macracanthorhynchus ingens (von Linstow, 1897) in North America. Chandler (1942) and Moore (1946) reported 11 o 13 raccoons ( Procyon lotor ) trapped in Angelina County, Texas, infected with these intestinal parasites. From 1 to 90 worms occurred in these animals. Chandler and Melvin (1951), in a study of parasites collected from mammals in Pennsylvania, reported M. ingens common in its usual host, the raccoon, and also found immature worms believed to belong to this species in skunk, Mephitis nigra ; mink, Mustela vision ; fox, Urocyon cineraoargenteus ; and mole, Parascalops breweri . Van Cleave (1953), in a review of North American Acanthocephala, lists the definitive host as raccoon of the States of Texas and Pennsylvania. He further states: “It is thought that the apparent discontinuous distribution of M. ingens is due to incomplete records of its occurrence in intervening states.” Subsequently, Goldberg (1954) reported 5 specimens of M. ingens in one of 14 skunks from Beltsville, Md. This parasite appears to be fairly common in raccoons from Maryland, as indicated by material from two stations in the State. Of 44 intestinal tracts collected during the winter months, 1943-1946, at the Patuxent Research Refuge, laurel, Maryland, 22 (50%) contained M. ingens in their intestines (Ediger, 1950). Numbers of these parasites per host varied from 1 to 125. Since then, additional raccoons from the Patuxent Research refuge have been found infected with M. ingens . The parasite has also been noted in raccoons collected from the Blackwater National Wildlife refuge and surrounding areas, near Cambridge on the eastern shore of Maryland. One raccoon obtained in May, 1950, contained five specimens of M. ingens . In a series of raccoons obtained by V.T. Harris, during the winter months 1950-1951, 32 (37%) of 86 raccoons examined were infected with M. ingens . Intensity varied from 1 to 44 worms per raccoon.

Maryland↗

Crustal magnetic anomalies

This Quadrennial Report departs in format from its predecessors. Earlier reports provided brief descriptions of the entire range of topics on “crustal magnetic anomalies.” Following guidelines established by the AGU, we instead focus our discussion on only a few selected topics. Our abbreviated list of references reflects this restricted focus. A more comprehensive bibliography can be obtained from the authors as noted subsequently. The past quadrennium was distinguished by a significant change in the scale and scope of crustal magnetic anomaly research. Advances in instrumentation, navigation, and data processing techniques resulted in increasing use of two-dimensional anomaly maps rather than profile data. Although maps are commonly used in aeromagnetic studies of continental areas, their use in the ocean basins has been limited until recently. The other important change has been a trend towards increased integration of magnetic anomaly data with gravity, seismic, geochemical, remote sensing, and geologic data to enhance the interpretation and reduce the ambiguity of magnetic field data.

Reviews of Geophysics↗

Immunostimulants, adjuvants, and vaccine carriers in fish: Applications to aquaculture

Use of immunostimulants, adjuvants, and vaccine carriers in fish culture offers a wide range of attractive methods for inducing and building up protection against diseases. Immunostimulants and adjuvants can be administered before, with, or after vaccines to amplify the specific immune response generating elevations of circulating antibody titers and numbers of plaque-forming cells. Special applications of immunostimulants include assisting shower or other regimens to increase topical uptake of vaccines. In addition, immunostimulants may be used alone, inducing elevated activities in the nonspecific defense mechanisms such as increased oxidative activity of neutrophils, augmented engulfment activity of phagocytic cells, or potentiating cytotoxic cells. In cases where disease outbreaks are cyclical and can be predicted, losses may be reduced by elevating the nonspecific defense mechanisms, and the immunostimulants may be used in anticipation of events to prevent losses from diseases. Complete Freund's adjuvant was one of the first immunostimulants used in animals to elevate the specific immune response, and it has also been successfully used in conjunction with injection of fish bacterins. Other adjuvants, immunostimulants, and biological response modifiers that have been used in fisheries research include levamisole, salt baths, and bacterial lipopolysaccharides. Vaccines have been adsorbed to inert particles, such as bentonite on latex beads, to carry the immunogens to maximize in vivo uptake for bath immunization and to facilitate in vitro phagocytosis. Each substance presents special problems in timing and method of administration (injection, immersion, oral—by feed—or flush treatments), dosage adjustments for size and fish species, storage stability, and cost. An additional consideration is that the nonspecific defense mechanisms and immune responses in fish are highly variable among individuals and statistical validation requires appropriate sample numbers and carefully controlled experiments. This article reviews the literature and present concepts of use of immunostimulants, adjuvants, and vaccine carriers in fish. Cautions for use are noted, as some of these potent substances can suppress or alter biological pathways if used inappropriately. Recent research, defining pathways of the action of immunostimulants, adjuvants, and vaccine carriers, helps explain how these substances activate the protective mechanisms in fish. In addition, immunostimulants used alone hold tremendous potential for use in fish farms, hatcheries, and aquaculture facilities to reduce losses from infectious diseases. Research on the immunostimulant, levamisole, and the light oil adjuvants for use in food fish is in progress. Applications for use of these immunostimulants are proposed.

Annual Review of Fish Diseases↗

Rapidly assessing social characteristics of drought preparedness and decision making: A guide for practitioners

Executive Summary This guide is intended to provide managers, decision makers, and other practitioners with advice on conducting a rapid assessment of the social dimensions of drought. Findings from a rapid assessment can provide key social context that may aid in decision making, such as when preparing a drought plan, allocating local drought resilience funding, or gathering the support of local agencies and organizations for collective action related to drought mitigation. Part I —In the introduction to Part I, we describe the unique problems associated with drought—particularly its slow onset and long duration, which make it difficult to define drought—and highlight five major types of drought (see Box 1). We introduce a few social dimensions of drought (such as economic and institutional perspectives), demonstrate how these dimensions can be interrelated, and describe a few of the modern challenges (such as transformational change and cascading risks) that practitioners face. We also provide background on the rapid assessment method, first describing it as a “snapshot” of the social landscape, then providing some key advantages of the method (it can be quicker and cheaper than more in-depth methods), and lastly describing how secondary data and other methods can help overcome some of the disadvantages of rapid assessments. Then, after summarizing the process of developing this guide, we outline the process of using the guide. Importantly, we compare the guide to a travel guide, which provides many different types of information and is best approached with specific interests in mind. Ultimately, we hope for this guide to be malleable enough that it can be helpful to researchers and practitioners in many different contexts, using many different research methods. Related to how to use the guide, we characterize the type of person who might be motivated to use this guide. We also specify key qualifications for a researcher conducting a rapid assessment, drawing particular attention to training on ethical considerations. We sketch out key considerations when choosing social dimensions of drought to focus on, and the type of data used for analysis. First, it is important to note that in this guide we provide nine important social dimensions of drought, but this is by no means a comprehensive list, and a researcher may find that other dimensions better fit their local context. Second, we provide some pros and cons to a narrow (focusing on just a few dimensions or at a smaller scale) versus broad research focus. Lastly, we describe the pros and cons of using primary versus secondary data (one strategy is to use both, sequentially) and qualitative versus quantitative data. Ultimately, Part I of this guide functions as an exploration of the various decisions a researcher will make when designing a rapid assessment. These decisions will inform the type of findings and other outcomes that result from the rapid assessment. Part II —Part II of this guide introduces nine key social dimensions of drought: defining the problem of drought, individual perceptions, social relationships, technology, economics and livelihoods, water governance, decision making, information, and social vulnerability. Each section provides background and key considerations related to a particular dimension, as well as ideas for how to explore the dimension via a rapid assessment. Part III —Part III of this guide provides two hypothetical examples of how one might use this guide to aid the practitioner in implementing the lessons learned here. In the first example, a watershed group uses two dimensions, defining the problem of drought and social relationships, to inform a community meeting about protecting fisheries from drought. In the second example, a resource manager uses the economics and livelihoods and social vulnerability dimensions to inform the development of a livestock grazing drought management plan.

Techniques and Methods↗

Internships, employment opportunities, and research grants

As an unbiased, multidisciplinary science organization, the U.S. Geological Survey (USGS) is dedicated to the timely, relevant, and impartial study of the health of our ecosystems and environment, our natural resources, the impacts of climate and land-use change, and the natural hazards that threaten us. Opportunities for undergraduate and graduate students and faculty to participate in USGS science are available in the selected programs described below. Please note: U.S. citizenship is required for all government positions. This publication has been superseded by USGS General Information Product 165 Grant Opportunities for Academic Research and Training and USGS General Information Product 166 Student and Recent Graduate Employment Opportunities . This publication is proceeded by USGS General Information Product 80 Internships, Employment Opportunities, and Research Grants published in 2008.

General Information Product↗

Understanding and mitigating bee drownings in open feeders

Whereas open feeders are relatively inexpensive and are easily set up and maintained, they do present a drowning hazard to bees. We observed that bees feeding off the walls of the open container fell into the sugar water because of their incarnation, interactions with other bees and when shooed off the feeder walls while removing the feeder for cleaning. Twigs, angled laths and utility screen perches permitted bees to exploit more of the sugar water surface area and provided drowning bees a platform for self-rescue. Because angled laths and utility screen perches extended over the entire feeder, they offered greater feeding surface area and increased the chances that a drowning bee would quickly encounter the perches for self-rescue than twig perches. Additionally, bees were less likely to fall into the sugar water when removing the angled lath and utility screen perches from the feeders than when removing twigs. Our anecdotal observations identified three characteristics of perches that can mitigate for the drowning hazard. Perches need to: 1. Allow bees to use a greater surface area of the sugar water to reduce crowding while feeding from the container walls. 2. Encompass most of the feeder to improve the chances that drowning bees will encounter the perch and be able to rescue themselves. 3. Allow bees to quickly extricate themselves from the sugar water to minimize sugar crystallization on the bees. The information presented herein provides a practical window into the factors that lead to bee drownings and the type of mitigation that is required. It is of note that we used the three perch types to develop perch characteristics for mitigating drowning hazards. Novice researchers can apply these principles to customize perches based on their specific needs.

Bee World↗

Factors affecting nest survival of Henslow's Sparrows ( Ammodramus henslowii ) in southern Indiana

Populations of Henslow’s Sparrows have declined dramatically in recent decades, coinciding with widespread loss of native grassland habitat. Prescribed burning is a primary tool for maintaining grassland patches, but its effects on nest survival of Henslow’s Sparrows remains largely unknown, especially in conjunction with other factors. We monitored 135 nests of Henslow’s Sparrows at Big Oaks National Wildlife Refuge in southern Indiana from 1998–2001 in an effort to understand factors influencing nest survival, including prescribed burning of habitat. We used a mixed-effects implementation of the logistic exposure model to predict daily nest survival in an information theoretic framework. We found that daily survival declined near the onset of hatching and increased with the height of standing dead vegetation, although this relationship was weak. We found only nominal support to suggest that time since burn influenced nest survival. Overall, nest age was the most important factor in estimating daily nest survival rates. Our daily survival estimate from our marginal model (0.937) was similar to that derived from the Mayfield method (0.944) suggesting that our results are comparable to previous studies using the Mayfield approach. Our results indicate that frequent burning to limit woody encroachment into grassland habitats might benefit Henslow’s Sparrow, but that a variety of factors ultimately influence daily nest survival. However, we note that burning too frequently can also limit occupancy by Henslow’s Sparrows. We suggest that additional research is needed to determine the population-level consequences of habitat alteration and if other extrinsic factors influence demographics of Henslow’s Sparrows.

Indiana↗

Chironomidae of the southeastern United States: a checklist of species and notes on biology, distribution, and habitat

We provide a current listing of the species of midges (Diptera:Chironomidae) in the southeastern United States (Alabama, Florida, Georgia, North Carolina, South Carolina, and Tennessee). This checklist should aid research on this group of insects, which have often proved useful in the assessment of water quality. We document each species' distribution and general habitat and provide the best taxonomic reference to facilitate the identification or description of species in that genus. Changes in nomenclature, unique ecological traits, bibliographic sources, or other items of information are summarized in a paragraph on each genus. Of the 10 sub-families currently recognized in the Chironomidae, 7 occur in the Southeast. The chironomid fauna of the six southeastern States now consist of 164 described genera and 479 described species. In addition we have listed 14 genera and 245 species that are tenatively noted as undescribed.

Fish and Wildlife Research↗

Interim Progress Report on the Application of an Independent Components Analysis-based Spectral Unmixing Algorithm to Beowulf Computers

This report describes work done to implement an independent-components-analysis (ICA) -based blind unmixing algorithm on the Eastern Region Geography (ERG) Beowulf computer cluster. It gives a brief description of blind spectral unmixing using ICA-based techniques and a preliminary example of unmixing results for Landsat-7 Thematic Mapper multispectral imagery using a recently reported1,2,3 unmixing algorithm. Also included are computer performance data. The final phase of this work, the actual implementation of the unmixing algorithm on the Beowulf cluster, was not completed this fiscal year and is addressed elsewhere. It is noted that study of this algorithm and its application to land-cover mapping will continue under another research project in the Land Remote Sensing theme into fiscal year 2004.

Open-File Report↗

Geographical Overview of the Three Gorges Dam and Reservoir, China - Geologic Hazards and Environmental Impacts

The Three Gorges Dam and Reservoir on the Yangtze River, China, has been an ambitious and controversial project. The dam, the largest in the world as of 2008, will provide hydropower, help to manage flood conditions, and increase the navigability of the Yangtze River. However, this massive project has displaced human and animal populations and altered the stability of the banks of the Yangtze, and it may intensify the seismic hazard of the area. It has also hindered archeological investigations in the reservoir and dam area. This report, originally in the form of a Microsoft PowerPoint presentation, gives a short history and overview of the dam construction and subsequent consequences, especially geologic hazards already noted or possible in the future. The report provides photographs, diagrams, and references for the reader's further research - a necessity, because this great undertaking is dynamic, and both its problems and successes continue to evolve. The challenges and consequences of Three Gorges Dam will be closely watched and documented as lessons learned and applied to future projects in China and elsewhere.

Open-File Report↗

Grain size data compilation and parameters of sediment samples; lower Cook Inlet, Alaska, 1976 through 1979

Lower Cook Inlet is the southern part of the large tidal inlet that connects Anchorage with the Pacific Ocean (fig. 1). During the summer field seasons of 1976, 1977, 1978, and 1979, the U.S. Geological Survey under contract with the Bureau of Land Management through the National Oceanic and Atmospheric Administration conducted geo-environmental studies in lower Cook Inlet (note Table 1) (Bouma and Hampton, 1976; Bouma and others, 1978, Hampton and Bouma 1979, 1980). The USGS research vessel SEA SOUNDER was used to obtain continuous seismic reflection profiles and to collect seafloor sediment samples. In addition, bottom samples were taken by the University of Alaska during benthic biological studies aboard the R/V MOANA WAVE (April 1976) and the NOAA vessel MILLER FREEMAN (October1976, Feder,1977). Textural analyses were carried out on sediment samples taken at 117 station locations. Sample collection was influenced by the nature of the substrate, texture, equipment malfunction and weather. Figure 2 presents a map with station locations. Station locations and other data are tabulated in Appendix I. A modified Van Veen grab sampler, capable of taking an undisturbed surface sample of 40X60X30 cm was used to collect unconsolidated sediment. In addition, a 3-m gravity corer and a 2-m vibracorer were used at selected sites. The top ten centimeters of each sample were used for grain size analysis. Most samples were taken from bedform fields that occupy much of central lower Cook Inlet. Water depths in the lower inlet range from 40 to 170 m, averaging approximately 70 m. Strong tidal currents are present and surface water velocities of 3-5 knots (150-250 cm/sec) are common during flood and ebb tides (Bouma and Hampton, 1978). The bottom of central lower Cook Inlet is almost completely covered by sand. Bedrock material can be observed at the seafloor on seismic records in isolated areas. The sand occurs in bedform patterns; textural data are important when determining the relationship between the currents and migrating sand bodies patterns. Immediate and long-term effects of sand movement over and around obstructions placed on the seafloor should be studied to prevent damage or destruction to the sensitive ecosystem of lower Cook Inlet. This report presents textural grain-size data that have been gathered for lower Cook Inlet samples, the method of collection, and analytical processes. The data in Appendix 2 can be used to compare calculated parameters in order to properly assess the sedimentary environment of lower Cook Inlet.

Alaska↗