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88 records · Page 5Linked to original sources

Assessment of shoreline vegetation in relation to use by molting black brant Branta bernicla nigricans on the Alaska Coastal Plain

To evaluate the importance of large thaw lakes on the Alaska Coastal Plain for molting Pacific black brant Branta bernicla nigricans , distribution and life form of shoreline vegetation were assessed using several scales: satellite imagery, point-intercept transects, cover quadrats, and a parameter for water regime. Brant population and distribution estimates from aerial surveys were used to classify large lakes into high, moderate, and low use. Correlations between brant and abundance of their preferred feeding site - moss flats - were best demonstrated by satellite imagery. Intercepts and cover ratings were not correlated, presumably because these techniques were less efficient at assessing area. General observations suggested that the presence of islands, large ice floes, and possibly other physical attributes of the habitat, influenced brant distribution. This area is unique because of low-lying, drained-lake basins that have ideal combinations of moss flats and large water areas where brant seek protection disturbance is vital to the success of this declining species because alternate habitats may not be available elsewhere on the Coastal Plain. in water or on ice floes. Protection of the area from disturbance is vital to the success of this declining species because alternate habitats may not be available elsewhere on the Coastal Plain.

Alaska

Global conservation status of turtles and tortoises (order Testudines)

We present a review and analysis of the conservation status and International Union for Conservation of Nature (IUCN) threat categories of all 360 currently recognized species of extant and recently extinct turtles and tortoises (Order Testudines). Our analysis is based on the 2018 IUCN Red List status of 251 listed species, augmented by provisional Red List assessments by the IUCN Tortoise and Freshwater Turtle Specialist Group (TFTSG) of 109 currently unlisted species of tortoises and freshwater turtles, as well as re-assessments of several outdated IUCN Red List assessments. Of all recognized species of turtles and tortoises, this combined analysis indicates that 20.0% are Critically Endangered (CR), 35.3% are Critically Endangered or Endangered (CR+EN), and 51.9% are Threatened (CR+EN+Vulnerable). Adjusting for the potential threat levels of Data Deficient (DD) species indicates that 56.3% of all data-sufficient species are Threatened. We calculated percentages of imperiled species and modified Average Threat Levels (ATL; ranging from Least Concern = 1 to Extinct = 8) for various taxonomic and geographic groupings. Proportionally more species in the subfamily Geoemydinae (Asian members of the family Geoemydidae) are imperiled (74.2% CR+EN, 79.0% Threatened, 3.89 ATL) compared to other taxonomic groupings, but the families Podocnemididae, Testudinidae, and Trionychidae and the superfamily Chelonioidea (marine turtles of the families Cheloniidae and Dermochelyidae) also have high percentages of imperiled species and ATLs (42.9–50.0% CR+EN, 73.8–100.0% Threatened, 3.44–4.06 ATL). The subfamily Rhinoclemmydinae (Neotropical turtles of the family Geoemydidae) and the families Kinosternidae and Pelomedusidae have the lowest percentages of imperiled species and ATLs (0%–7.4% CR+EN, 7.4%–13.3% Threatened, 1.65–1.87 ATL). Turtles from Asia have the highest percentages of imperiled species (75.0% CR+EN, 83.0% Threatened, 3.98 ATL), significantly higher than predicted based on the regional species richness, due to much higher levels of exploitation in that geographic region. The family Testudinidae has the highest ATL (4.06) of all Testudines due to the extinction of several species of giant tortoises from Indian and Pacific Ocean islands since 1500 CE. The family Testudinidae also has an ATL higher than all other larger polytypic families (≥ 5 species) of Reptilia or Amphibia. The order Testudines is, on average, more imperiled than all other larger orders (≥ 20 species) of Reptilia, Amphibia, Mammalia, or Aves, but has percentages of CR+EN and Threatened species and an ATL (2.96) similar to those of Primates and Caudata (salamanders).

Chelonian Conservation and Biology

Transcriptomic response to elevated water temperatures in adult migrating Yukon River Chinook salmon (Oncorhynchus tshawytscha)

Chinook salmon ( Oncorhynchus tshawytscha ) declines are widespread and may be attributed, at least in part, to warming river temperatures. Water temperatures in the Yukon River and tributaries often exceed 18°C, a threshold commonly associated with heat stress and elevated mortality in Pacific salmon. Untangling the complex web of direct and indirect physiological effects of heat stress on salmon is difficult in a natural setting with innumerable system challenges but is necessary to increase our understanding of both lethal and sublethal impacts of heat stress on populations. The goal of this study was to characterize the cellular stress response in multiple Chinook salmon tissues after acute elevated temperature challenges. We conducted a controlled 4-hour temperature exposure (control, 18°C and 21°C) experiment on the bank of the Yukon River followed by gene expression (GE) profiling using a 3′-Tag-RNA-Seq protocol. The full transcriptome was analysed for 22 Chinook salmon in muscle, gill and liver tissue. Both the 21°C and 18°C treatments induced greater activity in genes associated with protein folding (e.g. HSP70, HSP90 mRNA) processes in all tissues. Global GE patterns indicate that transcriptomic responses to heat stress were highly tissue-specific, underscoring the importance of analyzing multiple tissues for determination of physiological effect. Primary superclusters (i.e. groupings of loosely related terms) of altered biological processes were identified in each tissue type, including regulation of DNA damage response (gill), regulation by host of viral transcription (liver) and regulation of the force of heart contraction (muscle) in the 21°C treatment. This study provides insight into mechanisms potentially affecting adult Chinook salmon as they encounter warm water during their spawning migration in the Yukon River and suggests that both basic and more specialized cellular functions may be disrupted.

Alaska

U.S. Geological Survey Chesapeake science strategy, 2015-2025—Informing ecosystem management of America’s largest estuary

Executive Summary The U.S. Geological Survey (USGS) has the critical role of providing scientific information to improve the understanding and management of the Chesapeake Bay ecosystem. The USGS works with Federal, State, and academic science partners to provide research and monitoring, and communicate results of these activities to enhance ecosystem management for both the Chesapeake and other National ecosystems. The USGS Chesapeake Science Strategy was prepared to guide science activities to address the Chesapeake Bay Watershed Agreement (2014–2025), to support the Department of the Interior (DOI) involvement in the Bay restoration efforts, and align with the USGS Mission Area (MA) Science strategies. The Chesapeake Bay is our Nation’s largest estuary, and provides critical goods and services to the people, fish, and wildlife that use the 64,000-square-mile watershed. The Chesapeake Bay watershed contains over 3,600 species of fish, wildlife, and plants and provides spawning grounds for many ecologically and economically important species including striped bass and blue crabs. The Bay watershed lies in the heart of the Atlantic Flyway and has 29 species of waterfowl, about 1 million of which winter in the region. The size of the Chesapeake seafood harvest is third in the Nation, only behind the Atlantic and Pacific Oceans. Along with agricultural production, tourism, and recreation, the estimated economic value of the services from the Chesapeake Bay watershed is about $100 billion annually. However, the health of the Bay ecosystem began to decline at the beginning of the 20th century due to overfishing and increasing human population and associated land change. The Chesapeake Bay Program (CBP) is the Federal-State cooperative effort that started in 1983 to restore the Bay and watershed. Given the ecological and economic importance of the Chesapeake ecosystem, President Obama issued an Executive Order (EO) in 2009 for increased Federal leadership in the CBP to enhance the pace of restoration, and the supporting strategy was released in 2010. The EO directed the Federal Government, including the U.S. Department of the Interior (DOI), represented by the National Park Service (NPS), the U.S. Fish & Wildlife Service (FWS), and the USGS, to expand its efforts and increase leadership to restore the Bay and its watershed. The USGS and other Federal agencies expanded their activities in 2011 to meet the President’s Chesapeake EO. Since the EO was released, there have been several important changes in the USGS, DOI, and the CBP including: (1) the Chesapeake Bay Watershed Agreement, (2) increased DOI leadership in the CBP, and (3) the release of the USGS MA science strategies. The EO strategy served as a foundation for the Chesapeake Bay Watershed Agreement that was signed in 2014 by the CBP Partners, and has goals and outcomes to be met by 2025. The USGS developed the Chesapeake Science Strategy to guide our activities to address the Chesapeake Bay Watershed Agreement, DOI leadership in the CBP, and USGS MA strategies. Improving the understanding of fish and wildlife population and health, and the factors affecting their condition is the emphasis of the Strategy. The science focuses on documenting the critical ecosystem connections in the Chesapeake, and providing implications to enhance decision making for restoration and conservation activities. The revised Strategy has four themes that address 7 of the 10 goals in the Chesapeake Bay Watershed Agreement: Enhance science to support restoration, and conservation of fish, wildlife, and critical habitats. Characterize and explain changes in water quality, and its effect on freshwater and estuarine ecosystems. Assess and forecast effects of climate and land change on ecosystem conditions. Synthesize and provide information to support ecosystem management. The structure and function of biological communities of the Bay and its watershed are extremely complex and are affected by a variety of stressors and conditions. To better define the issues being addressed, the USGS has developed cross-cutting questions that define some of the most important scientific challenges where multiple disciplines and collaborators are needed to address an issue. The initial questions include: How do land and climate changes affect freshwater fish communities, health, and habitats? What are the relations among land use, water quality, contaminants, and the health of fish and wildlife? How are coastal wetlands and their carrying capacity for waterbirds affected by changing climate and land use? How is the water quality of rivers and estuaries responding to restoration actions, and changing land use? What are some of the best opportunities for management actions to benefit multiple restoration outcomes?

Delaware, Maryland, New York, Pennsylvania, Virgin

Examining inter-regional and intra-seasonal differences in wintering waterfowl landscape associations among Pacific and Atlantic flyways

The Central Valley of California (CVC) and Mid-Atlantic (MA) in the U.S. are both critical sites for nationwide food security, and many waterfowl species annually, especially during the winter, providing feeding and roosting locations for a variety of species. Mapping waterfowl distributions, using NEXRAD, may aid in the adaptive management of important waterfowl habitat and allow various government agencies to better understand the interface between wild and domestic birds and commercial agricultural practices. We used 9 years (2014–2023) of data from the US NEXRAD network to model winter waterfowl relative abundance in the CVC and MA as a function of weather, temporal period, environmental conditions, and landcover characteristics using boosted regression tree modelling. We were able to quantify the variability in effect size of 28 different covariates across space and time within two geographic regions which are critical to nationwide waterfowl management and host a high density of nationally important commercial agriculture. In general, weather, geographic (distance to features), and landcover condition (wetness index) predictors had the strongest relative effect on predicting wintering waterfowl relative abundance in both regions, while effects of land cover composition were more regionally and temporally specific. Increased daily mean temperature was a major predictor of increasing relative waterfowl abundance in both regions throughout the winter. Increasing precipitation had differing effects within regions, increasing relative waterfowl abundance in the MA, while decreasing in general within the CVC. Increasing relative waterfowl abundance in the CVC are strongly tied to the flooding of the landscape and rice availability, whereas waterfowl in the MA, where water is less limiting, are generally governed by waste grain availability and emergent wetland on the landscape. Waterfowl relative abundance in the MA was generally higher nearer to the Atlantic coast and lakes, while in the CVC they were higher nearer to lakes. Our findings promote a better understanding of spatial associations of waterfowl to landscape features and may aid in conservation and biosecurity management protocols.

California, Delaware, Maryland, New Jersey, North

Prey preferences and prey acceptance in juvenile Brown Treesnakes (Boiga irregularis)

On the Pacific island of Guam, control of the invasive Brown Treesnake (Boiga irregularis) relies largely on methods that use mice as bait. Juvenile B. irregularis feed primarily on lizards and their eggs, but little is known about their prey preference. We conducted an experiment to investigate preferences for, and acceptance of, dead geckos, skinks, and neonatal mice, in juvenile B. irregularis ranging from 290 mm to ca. 700 mm snout-vent length (SVL). Snakes of all sizes showed a preference for geckos over skinks and neonatal mice. Geckos were the first prey chosen in 87% of 224 initial trials (56 snakes subjected to four trials each; 33% would be expected from a random choice). The smallest snakes had the most pronounced preference. Although many of the snakes accepted neonatal mice and/or skinks, some snakes of all sizes were reluctant to feed on anything but geckos, especially when well fed. We also addressed the hypothesis that repeated encounters with a particular prey type increase a snake's preference for that prey. Our study does not support this hypothesis. Our results suggest that control methods relying solely on rodent bait may be inefficient for targeting snakes < 700 mm SVL and that individual heterogeneity in prey preference may cause a significant part of this juvenile cohort to be completely refractory to capture with rodent bait, even if the bait is dead and small enough to be readily swallowed.

Herpetological Conservation and Biology

Integrated science strategy for assessing and monitoring water availability and migratory birds for terminal lakes across the Great Basin, United States

Executive Summary In 2022, the U.S. Geological Survey (USGS) established the Saline Lake Ecosystems Integrated Water Availability Assessment (IWAAs) to monitor and assess the hydrology of terminal lakes in the Great Basin and the migratory birds and other wildlife dependent on those habitats. Scientists from across the USGS (with specialties in water quantity, water quality, limnology, avian biology, data science, landscape ecology, and science communication) formed the Saline Lake Ecosystems IWAAs Team. The team has developed this regional strategic science plan to guide data collection and assessment activities at terminal lakes in the Great Basin. The U.S. Congress requested the USGS to establish the Saline Lake Ecosystems IWAAs in response to historically low water levels at terminal lakes and associated wetlands across the Great Basin. Not all Great Basin terminal lakes have high salinity; however, all terminal lakes occur in endorheic, closed, basins with no surface-water outflow. Low lake levels across the Great Basin are the result of increased water use for agriculture and municipalities, drought conditions, and a warming climate. Great Basin terminal lake water extents have decreased by as much as 90 percent over the last 150 years, and terminal lake wetlands have decreased in area by as much as 47 percent since 1984. Lake elevations and wetland areas are primarily supported by freshwater inputs from snowmelt feeding upgradient rivers, streams, and springs. These freshwater inputs have been severely reduced because of continued and increased surface-water diversions and surface-water capture through groundwater pumping for agriculture, mining, and public supply as well as unprecedented drought conditions and warming temperatures related to climate change. Water quality, specifically salinity, is highly variable for terminal lakes of the Great Basin, and this variability is a result of the balance between freshwater inflow and evaporation. Variability of salinity at each of the terminal lakes can be affected by lake morphology, hydrogeologic features of the basin, annual variability in weather patterns, and changes in upgradient water use. Hypersaline terminal lakes provide abundant food resources such as brine shrimp and brine flies that support nesting and migrating birds. The density and composition of invertebrates are closely tied to lake salinity. Increased salinity can exceed the tolerance of invertebrates, severely limiting their biomass. In contrast, decreased salinity can lead to altered invertebrate community composition, reducing the abundance of optimal avian prey resources. Great Basin terminal lake ecosystems, including open-water and adjacent aquatic and terrestrial environments, provide resources necessary to sustain many animal populations throughout the year. Although a variety of taxa use terminal lakes, these ecosystems are of acute importance for the millions of migratory waterbirds (for example, shorebirds, wading birds, and waterfowl) dependent on the network of terminal lakes and their associated wetlands. Migratory birds transiting the Pacific and Central Flyways use Great Basin terminal lake ecosystems throughout the year to feed, nest, and transit between wintering and breeding ranges. As such, successful conservation of birds and their habitats requires coordinated management of water and habitats across the Great Basin network of terminal lakes and wetlands. The linkages between water availability and ecosystem vulnerability of terminal lakes in the Great Basin are not well understood. The vulnerability of terminal lakes is related to the factors driving change and adaptive capacity of the lake ecosystem. Saline lake ecosystems are vulnerable when changes in water quantity affect ecosystem function. Water quantity affects salinity, which affects food webs and habitat; these linkages can be investigated with water-quality and food web monitoring. Water quantity also affects inundated habitat, which can be quantified through remote sensing. It is necessary to quantify hydroclimatic and water use controls on water availability to terminal lakes to assess the response of the ecosystems. Remotely sensed data can provide a broad-scale and long-term synoptic view of terminal lake hydrologic characteristics, but ground observations are required to interpret changes in water quality and ecological functions. Some terminal lake basins have ongoing monitoring and modeling efforts within the Great Basin (for example, Great Salt Lake, Carson River Basin), yet most monitoring locations are hydrologically upgradient and too far away from lake inflows to provide an accurate assessment of hydrological trends for the lake ecosystems. Other terminal lakes have no long-term hydrological monitoring in their respective watersheds (for example, Lake Abert). Ecological data collection in the Great Basin is also insufficient to understand how many birds exist on the landscape, how birds use the mosaic of terminal-lake habitats as an interconnected system, and how Great Basin terminal lakes are linked to the larger continental system of the Pacific and Central Flyways. Across agencies and organizations, tracking bird movement, abundance, and diversity is inconsistent, with some lakes having once- or twice-a-year bird survey efforts and a few locations having more intensive ecological data-gathering efforts (for example, Great Salt Lake, Lake Abert). Bridging hydrological and ecological information gaps will improve understanding of the trends in water supply and water quality, habitat availability and usage, and impacts on vulnerable waterbird species, all of which would be used by managers in coordinated conservation of this unique network of terminal-lake habitats. The terminal lakes of the Great Basin are part of the Basin and Range physiographic province that extends from the Colorado Plateau on the east to the Sierra Nevada on the west, and from the Snake River Plain on the north to the Garlock fault and the Mojave block on the south. The Great Basin is larger than 650,000 square kilometers and encompasses most of the State of Nevada but also extends to western Utah, eastern California, southeastern Idaho, southwestern Wyoming, and southeastern Oregon. The climate is arid to semiarid with a hydrologic regime that is snowmelt dominated, providing as much as 75 percent of total annual runoff for the region. Terminal lakes of the Great Basin occupy the lowest areas of closed (endorheic) drainage basins, such that lake levels and water quality respond rapidly to surface-water inflow. Terminal lakes provide local and regional economic value to the States in the Great Basin, including mineral extraction, aquaculture, public works, and recreational uses. As an example, assessments of Great Salt Lake’s ecological health and economic impact find hemispheric importance for the former and regional importance for the latter. Great Salt Lake creates about 7,000 jobs and $2 billion of economic output per year, most of which would be lost with further declines in lake level. The objectives of this Science Strategy are threefold: (1) to identify how changing water availability affects the quality, diversity, and abundance of habitats supporting continental waterbird populations; (2) to highlight the scientific monitoring and assessment needs of Great Basin terminal lakes; and (3) to support coordinated management and conservation actions to benefit those ecosystems, migratory birds, and other wildlife. There are long-term hydrological, ecological, and societal challenges associated with terminal lakes ecosystems in the Great Basin. This Science Strategy benefits partners by providing a conceptual model, nested at different spatial extents, that identifies key scientific information needs to inform coordinated implementation of management and conservation plans within and among hydrologic basins to address these complex challenges.

California, Idaho, Nevada, Oregon, Utah, Wyoming

California State Waters Map Series — Offshore of Salt Point, California

In 2007, the California Ocean Protection Council initiated the California Seafloor Mapping Program (CSMP), designed to create a comprehensive seafloor map of high-resolution bathymetry, marine benthic habitats, and geology within the 3-nautical-mile limit of California&rsquo;s State Waters. The CSMP approach is to create highly detailed seafloor maps through collection, integration, interpretation, and visualization of swath sonar data, acoustic backscatter, seafloor video, seafloor photography, high-resolution seismic-reflection profiles, and bottom-sediment sampling data. The map products display seafloor morphology and character, identify potential marine benthic habitats, and illustrate both the surficial seafloor geology and shallow (to about 100 m) subsurface geology. The Offshore of Salt Point map area is located in northern California, about 110 km north of San Francisco and 50 km south of Point Arena. The map area includes three California Marine Protected Areas: the southern portion of the Stewarts Point State Marine Reserve, the Salt Point State Marine Conservation Area, and the Gerstle Cove State Marine Reserve. The coast and shoreline are rugged and scenic, characterized by rocky promontories, steep bluffs capped by bare to forested marine terraces, kelp-rich coves, and nearshore rocks and pinnacles. The largely undeveloped onshore part of the map area is used primarily for grazing and recreation. U.S. Highway 1 extends along the coast through the map area, passing through Salt Point State Park, Kruse Rhododendron State Natural Reserve, and Stillwater Cove Regional Park. Sandy beaches are uncommon, present only in relatively protected coves. The seafloor in the map area extends from the shoreline to water depths of about 90 to 100 m. The nearshore to inner shelf area (to water depths of about 50 to 60 m) typically dips seaward about 1.0&deg; to 1.5&deg; and is underlain by bedrock and sand-sized to coarser grained sediment. The midshelf, underlain predominantly by muddy sediments, slopes more gently (less than 0.5&deg;). Surficial and shallow sediments were deposited in the last about 21,000 years during the approximately 125-m sea-level rise that followed the last major lowstand associated with the Last Glacial Maximum, at which time the entire Offshore of Salt Point map area was emergent and the shoreline was about 20 km west of the present-day shoreline. Tectonic influences that impact the shelf morphology and geology in the map area are related to local faulting, folding, uplift, and subsidence. The onshore part of the map area is cut by the northwest-striking San Andreas Fault&mdash;the right-lateral transform boundary between the North American and Pacific tectonic plates with an estimated slip rate of about 17 to 25 mm/yr in this area. The region between Fort Ross and Point Arena, west of the San Andreas Fault, is the known as the &ldquo;Gualala Block&rdquo; on the basis of its distinctive geology. The Gualala Block consists of a thick, discontinuous Upper Cretaceous to Miocene stratigraphic section, however, only the submarine fan deposits of the Paleocene and Eocene German Rancho Formation are exposed along the coast in the Offshore of Salt Point map area. The German Rancho Formation also forms all of the rugged seafloor bedrock outcrops in the map area. The western boundary of the Gualala Block lies 3 to 5 km offshore, perhaps at the shore-parallel Gualala Fault. High-resolution seismic-reflection data reveal shallow folding and faulting in inferred upper Pleistocene strata along the Gualala Fault trend, suggesting this structure is now or has been recently active. The last ground rupture in the map area occurred during the devastating great 1906 California earthquake (M7.8, 4/18/1906), thought to have nucleated on the San Andreas Fault about 100 kilometers to the south offshore of San Francisco. Circulation over the continental shelf in the map area is dominated by the southward-flowing California Current, the eastern limb of the North Pacific Gyre. Associated upwelling brings cool, nutrient-rich waters to the surface, resulting in high biological productivity. The current flow generally is southeastward during the spring and summer; however, during the fall and winter, the otherwise persistent northwest winds are sometimes weak or absent, causing the California Current to move farther offshore and the Davidson Current, a weaker, northward-flowing countercurrent, to become active. Throughout the year, this part of the central California coast is exposed to four wave climate regimes: the north Pacific swell, the southern swell, northwest wind waves, and local wind waves. The north Pacific swell dominates in winter months, with wave heights at offshore buoys ranging from 2 to 10 m and wave periods ranging from 10 to 25 s. During summer months, the largest waves come from the southern swell, generated by storms in the south Pacific and offshore Central America. Characteristically, these swells have smaller wave heights (0.3 to 3 m) and similarly long periods (range 10 to 25 s). Northwest wind waves affect the coast throughout the year, while local wind waves are most common from October to April. These two wind-wave regimes typically have wave heights of 1 to 4 m and short periods (3 to 10 s). Potential marine benthic habitats in the Offshore of Salt Point map area include unconsolidated continental shelf sediments, mixed continental shelf substrate, and hard continental shelf substrate. Rocky-shelf outcrops and rubble are considered to be promising potential habitats for rockfish and lingcod, both of which are recreationally and commercially important species.

California

California State Waters Map Series — Offshore of Bodega Head, California

Introduction In 2007, the California Ocean Protection Council initiated the California Seafloor Mapping Program (CSMP), designed to create a comprehensive seafloor map of high-resolution bathymetry, marine benthic habitats, and geology within the 3-nautical-mile limit of California&rsquo;s State Waters. The CSMP approach is to create highly detailed seafloor maps through collection, integration, interpretation, and visualization of swath sonar data, acoustic backscatter, seafloor video, seafloor photography, high-resolution seismic-reflection profiles, and bottom-sediment sampling data. The map products display seafloor morphology and character, identify potential marine benthic habitats, and illustrate both the surficial seafloor geology and shallow subsurface geology. The Offshore of Bodega Head map area is located in northern California, about 70 km north of San Francisco and about 80 km south of Point Arena. The onshore part of the map area is largely undeveloped, used primarily for recreation, farms and ranches, and a few wineries. The small town of Bodega Bay, located on the east side of Bodega Harbor, is the largest cultural center. Bodega Harbor is an important commercial fishing base and, in season, an active sport fishing and recreation harbor. Much of the coastline from Bodega Head north to about 6 km north of the Russian River is part of Sonoma Coast State Park. The Offshore of Bodega Head map area includes two California Marine Protected Areas, the Bodega Head State Marine Reserve and the northern part of the Bodega Head State Marine Conservation Area. Additionally, the inland parts of two large estuaries in the map area, Estero Americano and Estero de San Antonio, have been designated as State Marine Recreational Management Areas. The map area is cut by the northwest-striking San Andreas Fault, the right-lateral transform boundary between the North American and Pacific plates. This fault juxtaposes rocks of the Jurassic and Cretaceous Franciscan Complex on the northeast with Cretaceous granitic rocks on the southwest, and it has an estimated slip rate of about 17 to 25 mm/yr in this area. The devastating great 1906 California earthquake (M7.8) is thought to have nucleated on the San Andreas Fault offshore of San Francisco, about 80 km south of Bodega Head, with the rupture extending northward through the Offshore of Bodega Head map area and an additional 220 km to the south flank of Cape Mendocino. North of the mouth of Salmon Creek, the coast and shoreline are rugged and scenic, characterized by flights of uplifted marine terraces, rocky promontories, nearshore sea stacks, kelp-rich coves, and both pocket beaches and longer beach strands, the latter of which include Wrights Beach and Portuguese Beach. The coast has lower relief between the mouth of Salmon Creek and Mussel Point, where South Salmon Creek Beach is backed by a large (about 4 km 2 ) complex of coastal sand dunes. The enormous volume of sand on the beach and in the dune field is derived by southward littoral drift from the Russian River, Salmon Creek, and smaller coastal watersheds. The sediment is trapped by protruding bedrock at Mussel Point, which represents the south end of the Russian River littoral cell. Bodega Head is underlain by Cretaceous granitic rocks, and its shoreline is variously characterized by relatively low-lying terraces, steep and high bluffs, and a few pocket beaches. East of Bodega Head, Doran Beach (part of Doran Regional Park) is a 1.7-km-long sand spit that forms the north boundary of Bodega Bay and the south boundary of Bodega Harbor. The coast south of Doran Beach on the east flank of Bodega Bay is composed of rocky bluffs, hummocky marine terraces, and a few small pocket beaches. The bluffs are underlain by sheared rocks of the Franciscan Complex and are highly susceptible to landslides. This section of coast includes two prominent watersheds, Estero Americano and Estero de San Antonio, which drain westward into Bodega Bay. The offshore part of the Offshore of Bodega Head map area is characterized by an extensive, rugged and rocky shelf underlain by Cretaceous granitic rocks. This rocky terrain, centered offshore of Bodega Head, extends northwestward for about 15 km, from the south edge of the map area (where it forms the west boundary of Bodega Bay) to the northern-central part of the map area offshore of the mouth of Salmon Creek. This rocky seafloor reaches water depths of 40 to 80 m and is overlain by young sediment. Circulation over the shelf and seafloor in the map area (and in the broader central California region) is dominated by the southward-flowing California Current, the eastern boundary current of the North Pacific Gyre. Associated upwelling brings cool, nutrient-rich waters to the surface, resulting in high biological productivity. Persistent northwest winds are sometimes weak or absent during the fall and winter, causing the California Current to move farther offshore so that the shelf is affected by the Davidson Current, a weaker northward-flowing countercurrent. As a result, net flow over the continental shelf is commonly southeastward during the spring and summer and northwestward during the fall and winter. Throughout the year, this part of the northern California coast is exposed to four wave climate regimes: the north Pacific swell, the southern swell, northwest wind waves, and local wind waves. The north Pacific swell dominates in winter months (typically November through March). During summer months, the largest waves come from the southern swell, generated by storms in the south Pacific and offshore of Central America. Northwest wind waves affect the coast throughout the year, whereas local wind waves are most common from October to April. Potential marine benthic habitats in the Offshore of Bodega Head map area include unconsolidated continental-shelf sediments, mixed continental-shelf substrate, and hard continental-shelf substrate. Rocky-shelf outcrops and rubble are considered to be promising potential habitats for rockfish and lingcod, both of which are recreationally and commercially important species.

California

Southern Salish Sea Habitat Map Series: Admiralty Inlet

In 2010 the Environmental Protection Agency, Region 10 initiated the Puget Sound Scientific Studies and Technical Investigations Assistance Program, designed to support research in support of implementing the Puget Sound Action Agenda. The Action Agenda was created in response to Puget Sound having been designated as one of 28 estuaries of national significance under section 320 of the U.S. Clean Water Act, and its overall goal is to restore the Puget Sound Estuary's environment by 2020. The Southern Salish Sea Mapping Project was funded by the Assistance Program request for proposals process, which also supports a large number of coastal-zone- and ocean-management issues. The issues include the recommendations of the Marine Protected Areas Work Group to the Washington State Legislature (Van Cleve and others, 2009), which endorses a Puget Sound and coast-wide marine conservation needs assessment, gap analysis of existing Marine Protected Areas (MPA) and recommendations for action. This publication is the first of four U.S. Geological Survey Scientific Investigation Maps that make up the Southern Salish Sea Mapping Project. The remaining three map blocks to be published in the future, located south of Admiralty Inlet, are shown in figure 1. Puget Sound is a deep, fjord-type estuary covering an area of 2,330 km 2 in the Pacific Northwest region of the United States (fig. 1). It is connected to the ocean by the Strait of Juan de Fuca, a turbulent passage approximately 160 km in length and 22 km wide at its west end, expanding to over 40 km wide at its east end (Thomson, 1994). During the Pleistocene, the area was occupied several times by lobes of continental ice, resulting in a complex basin-fill of glacial and interglacial deposits that are locally as thick as 1100 m (Johnson and others, 2001). The last glaciation, called the Fraser glaciation, began after 28,800&plusmn;740 14 C yr B.P. when ice started a slow expansion (Clague, 1981). At peak advance the westward Juan de Fuca lobe reached the edge of the continental shelf through the Juan de Fuca Strait shortly before 14,460&plusmn;200 14 C yr B.P. (Herzer and Bornhold, 1982). The southward Puget lobe advanced to its terminal position in Puget Sound by around 14,150 14 C yr B.P. (Porter and Swanson, 1998). Ice retreated from its maximum to northern Whidbey Island by 13,650&plusmn;350 14 C yr B.P. (Dethier and others, 1995). Retreating glaciers resulted in a thick sequence of ice-contact, glacial-marine sediment, and early post-glacial sediments (Linden and Schurrer, 1988). These deposits have experienced the effects of a marine transgression followed by regression, resulting in a sea-level several tens of meters lower than the present day (Linden and Schurrer, 1988). A second transgression brought sea level to about the present level by around 5,470&plusmn;120 14 C yr B.P. (Clague and others, 1982) establishing the present oceanographic and geologic environment Puget Sound is separated into four interconnected basins; Whidbey, Central (Main), Hood Canal, and South (Thomson, 1994). The Whidbey, Central, and Hood Canal basins are the three main branches of the Puget Sound estuary and are separated from the Strait of Juan de Fuca by a double sill at Admiralty Inlet. The Admiralty Inlet map area includes the Inlet and a portion of the Whidbey Basin (fig. 1). The shallower South Basin is separated by a sill at Tacoma Narrows and is highly branched with numerous finger inlets. Flow within Puget Sound is dominated by tidal currents of as much as 1 m/s at Admiralty Inlet, reducing to approximately 0.5 m/s in the Central Basin (Lavelle and others, 1988). The lack of silt and clay-sized sediments in the Admiralty Inlet map area is likely a result of the strong currents (see Ground-Truth Studies for the Admiralty Inlet Map Area, sheet 3). The subtidal component of flow reaches approximately 0.1 m/s and is driven by density gradients arising from the contrast in salty ocean water at the entrance and freshwater inputs from stream flow (Lavelle and others, 1988). The total freshwater input to Puget Sound is approximately 3.4 x 10 6 m 3 /day, primarily from the Skagit River (Cannon, 1983). The subtidal circulation mostly consists of a two-layered flow in the basins with fresher water exiting at the surface and saltier water entering at depth (Ebbesmeyer and Cannon, 2001). In general, surface waters flow north and deeper waters flow south; variations arise from wind effects that can drive a surface current in the same direction as the wind, and a baroclinic response in the lower layer to about 100-m depth (Matsuura and Cannon, 1997). Oceanographic properties are influenced by temporal forcing parameters such as reduced stream flow during the 2000-01 drought that increased surface salinity and decreased differences between surface and bottom waters (Newton and others, 2003). On offshore seismic-reflection profiles, Pleistocene strata (excluding latest Pleistocene glacial and post-glacial deposits) form a distinct seismic unit, bounded below by pre-Tertiary or Tertiary basement and above by typically flat-lying latest Pleistocene to Holocene deposits that fill in erosional or depositional relief (Johnson and others, 2001). Cores from central Puget Sound have accumulation rates that range from 85 to 1200 mg/cm 2 /yr, or 0.12 to 2.4 cm/yr; the highest accumulation rates are near the southern end of central Puget Sound (Carpenter and others, 1985). Carpenter and others (1985) un-weighted arithmetic mean of accumulation rates for central Puget Sound deeper stations is 480&plusmn;340 (&plusmn; one standard deviation) mg/cm 2 /yr. Lavelle and others (1985) also found rates as high as 1200 mg/cm 2 /yr over the past approximately 70 years in cores in the Central Basin off of and north and south of Elliott Bay. Puget Sound basin rates are comparable to rates in midshelf silt deposits on the Washington coast north of the Columbia River (Nittrouer and others, 1979). The deep subtidal (in other words, below SCUBA depths) habitats of Puget Sound are relatively poorly known. A few subtidal surveys exist for several habitat types from the 1960s and 1970s (reviewed in Dethier, 1990), using grab and box core data. The Dethier (1990) review divides habitat up into Coast and Marine Ecological Classification Standard (CMECS) substrate, water column energy, and depth zones but does not attempt to map these habitats, rather it is an inventory of habitats found in the area and the flora and fauna associated with each habitat. The approach of the Southern Salish Sea Mapping project is to create highly detailed seafloor maps through collection, integration, interpretation, and visualization of swath sonar data (the undersea equivalent of satellite remote-sensing data in terrestrial mapping), acoustic backscatter, seafloor video, seafloor photography, and bottom-sediment sampling data. This approach is based in part on methods presented and data collection and product needs identified at the Washington State Seafloor Mapping Workshop (Washington State Seafloor Mapping Workshop Steering Committee, 2008), attended by coastal and marine managers and scientists. The map products display seafloor geomorphology and substrate, and identify potential marine benthic habitats. It is emphasized that the more interpretive habitat and geology maps rely on the integration of multiple, new high-resolution datasets and that mapping at small scales would not be possible without such data. Oceanographic current and wave data is not included in this analysis, however, the accompanying geographic information system (GIS) data set is designed and intended to be combined with oceanographic and biologic data sets assembled by others in the future and some of the GIS data has already been incorporated in the unpublished Nature Conservancy Benthic Habitats of Puget Sound database. This publication includes four map sheets, explanatory text, and a descriptive pamphlet. Each map sheet is published as a portable document format (PDF) file. ESRI ArcGIS compatible geotiffs (for example, bathymetry) and shapefiles (for example video observation points) will be available for download in the data catalog associated with this publication (Cochrane, 2015). An ArcGIS Project File with the symbology used to generate the map sheets is also provided. For those who do not own the full suite of ESRI GIS and mapping software, the data can be read using ESRI ArcReader, a free viewer that is available at http://www.esri.com/software/arcgis/arcreader/index.html .

Washington

Influence of lamprey rearing type on measures of performance

Declines in populations of Pacific Lamprey (Entosphenus tridentatus) have raised concerns by the Columbia River tribes, who then initiated efforts to protect and restore them throughout their historical range. The Columbia River Inter-Tribal Fish Commission (CRITFC) devised a restoration plan for lamprey in the Columbia River Basin which highlights the significance of lamprey to the tribes and recommends conservation actions. The plan calls for the development of artificial propagation (AP) protocols to provide fish for research (e.g., downstream passage studies) and restoration activities (e.g., supplemental releases into streams/rivers). The ideal outcome of these efforts would be cultured fish that are comparable to the corresponding wild fish, and efforts are underway to conduct such evaluations in larval and juvenile lamprey. The CRITFC lamprey restoration plan lists improving dam passage for juvenile and larval lamprey as a high priority action. Active telemetry techniques have not been an option until recently, when a prototype micro acoustic transmitter was designed for small, elongate fishes like lamprey and eels. Passage survival studies of juvenile and larval lamprey using acoustic telemetry are now possible but are challenged with the limited availability of research animals. The use of AP fish would facilitate passage survival studies, under the assumption that AP juvenile and larval lamprey perform and survive comparably to the wild lamprey they are intended to represent. The current study was enacted to add to the growing knowledge of how reliably AP lamprey can be used as surrogates for wild lamprey. Study objectives were to: 1) compare the swimming ability of AP and wild juvenile lamprey implanted with the prototype micro acoustic transmitter and 2) compare the performance of AP and wild larval lamprey by evaluating night activity levels, burrowing ability, and photokinetic response to tail illumination over a period of 5-months in a culture setting. Evaluations of juvenile lamprey sustained swimming performance did not reveal any differences between tagged and untagged lamprey of AP or wild origin. We standardized the stage of transformation for all tested lamprey to minimize variation. Our tests were constrained by limited access to juvenile lamprey, so significant differences between rearing types may have gone undetected. More information on how rearing type influences other lamprey life stages and swimming performance will add to the growing knowledge on how reliably AP lamprey can serve as surrogates for wild lamprey. We compared AP and wild larval lamprey using three performance metrics, both shortly after they arrived at our laboratory and through a 5-month study period. Within the AP and wild test groups, we divided lamprey into small (30-70 mm total length) and large (80-120 mm total length) size categories, forming four test groups. Each of the test groups were comprised of 25 lamprey and were held in separate tanks. These tanks were the source of test fish for all performance testing. Our results for 2 of 3 of the performance metrics showed no differences between rearing types, and we found limited evidence to suggest that duration in a culture setting changed performance. Night activity levels were low for all test groups. Burrowing times were significantly different by rearing type, with wild lamprey burrowing faster than AP lamprey, in both the small and large size categories. These significant differences in rearing type could be a concern for use of AP lamprey for restoration or research needs, but they may not be biologically meaningful. Both AP and wild lamprey completed burrowing in median times of less than 1 min, which minimizes concerns about predation risk. Additional opportunities to evaluate burrowing performance of AP and wild larval lamprey would be helpful to inform future planned uses of AP lamprey. Finally, our evaluations of photokinetic response to tail illumination revealed similar proportions of AP and wild larvae moving in response to illumination, and no significant differences in response time between the groups. The wild lamprey, however, consistently had faster (but not significantly) response times than AP fish. This finding supports the significantly faster burrowing times we observed for wild lamprey compared to AP fish. Taken together, these lines of evidence raise some concerns for the ability of AP lamprey to serve as defensible surrogates for wild lamprey because the ability to reliably burrow is so critical for larvae. Burrowing performance and photokinetic response to tail illumination were both easy to measure and will be valuable metrics for evaluating rearing types in future studies.

Report

Range-wide declines of northern spotted owl populations in the Pacific Northwest: A meta-analysis

The northern spotted owl ( Strix occidentalis caurina ) inhabits older coniferous forests in the Pacific Northwest and has been at the center of forest management issues in this region. The immediate threats to this federally listed species include habitat loss and competition with barred owls ( Strix varia ), which invaded from eastern North America. We conducted a prospective meta-analysis to assess population trends and factors affecting those trends in northern spotted owls using 26 years of survey and capture-recapture data from 11 study areas across the owls' geographic range to analyze demographic traits, rates of population change, and occupancy parameters for spotted owl territories. We found that northern spotted owl populations experienced significant declines of 6–9% annually on 6 study areas and 2–5% annually on 5 other study areas. Annual declines translated to ≤35% of the populations remaining on 7 study areas since 1995. Barred owl presence on spotted owl territories was the primary factor negatively affecting apparent survival, recruitment, and ultimately, rates of population change. Analysis of spotted and barred owl detections in an occupancy framework corroborated the capture-recapture analyses with barred owl presence increasing territorial extinction and decreasing territorial colonization of spotted owls. While landscape habitat components reduced the effect of barred owls on these rates of decline, they did not reverse the negative trend. Our analyses indicated that northern spotted owl populations potentially face extirpation if the negative effects of barred owls are not ameliorated while maintaining northern spotted owl habitat across their range.

California, Oregon, Washington

Spatiotemporal patterns and habitat associations of smallmouth bass (Micropterus dolomieu) invading salmon-rearing habitat

1. Smallmouth bass ( Micropterus dolomieu ) have been widely introduced to fresh waters throughout the world to promote recreational fishing opportunities. In the Pacific Northwest (U.S.A.), upstream range expansions of predatory bass, especially into subyearling salmon-rearing grounds, are of increasing conservation concern, yet have received little scientific inquiry. Understanding the habitat characteristics that influence bass distribution and the timing and extent of bass and salmon overlap will facilitate the development of management strategies that mitigate potential ecological impacts of bass. 2. We employed a spatially continuous sampling design to determine the extent of bass and subyearling Chinook salmon ( Oncorhynchus tshawytscha ) sympatry in the North Fork John Day River (NFJDR), a free-flowing river system in the Columbia River Basin that contains an upstream expanding population of non-native bass. Extensive (i.e. 53 km) surveys were conducted over 2 years and during an early and late summer period of each year, because these seasons provide a strong contrast in the river’s water temperature and flow condition. Classification and regression trees were applied to determine the primary habitat correlates of bass abundance at reach and channel-unit scales. 3. Our study revealed that bass seasonally occupy up to 22% of the length of the mainstem NFJDR where subyearling Chinook salmon occur, and the primary period of sympatry between these species was in the early summer and not during peak water temperatures in late summer. Where these species co-occurred, bass occupied 60–76% of channel units used by subyearling Chinook salmon in the early summer and 28–46% of the channel units they occupied in the late summer. Because these rearing salmon were well below the gape limitation of bass, this overlap could result in either direct predation or sublethal effects of bass on subyearling Chinook salmon. The upstream extent of bass increased 10–23 km (2009 and 2010, respectively) as stream temperatures seasonally warmed, but subyearling Chinook salmon were also found farther upstream during this time. 4. Our multiscale analysis suggests that bass were selecting habitat based on antecedent thermal history at a broad scale, and if satisfactory temperature conditions were met, mesoscale habitat features (i.e. channel-unit type and depth) played an additional role in determining bass abundance. The upstream extent of bass in the late summer corresponded to a high-gradient geomorphic discontinuity in the NFJDR, which probably hindered further upstream movements of bass. The habitat determinants and upstream extent of bass were largely consistent across years, despite marked differences in the magnitude and timing of spring peak flows prior to bass spawning. 5. The overriding influence of water temperature on smallmouth bass distribution suggests that managers may be able limit future upstream range expansions of bass into salmon-rearing habitat by concentrating on restoration activities that mitigate climate- or land-use-related stream warming. These management activities could be prioritised to capitalise on survival bottlenecks in the life history of bass and spatially focused on landscape knick points such as high-gradient discontinuities to discourage further upstream movements of bass.

Pacific Northwest

California State Waters map series — Offshore of Aptos, California

Introduction In 2007, the California Ocean Protection Council initiated the California Seafloor Mapping Program (CSMP), designed to create a comprehensive seafloor map of high-resolution bathymetry, marine benthic habitats, and geology within California&rsquo;s State Waters. The CSMP approach is to create highly detailed seafloor maps through collection, integration, interpretation, and visualization of swath sonar bathymetric data (the undersea equivalent of satellite remote-sensing data in terrestrial mapping), acoustic backscatter, seafloor video, seafloor photography, high-resolution seismic-reflection profiles, and bottom-sediment sampling data. The map products display seafloor morphology and character, identify potential marine benthic habitats, and illustrate both the surficial seafloor geology and shallow subsurface geology. The Offshore of Aptos map area is located on the Pacific Coast, on the north side of Monterey Bay, about 105 km southeast of San Francisco. The largest incorporated city in the map area, Capitola, and numerous unincorporated towns including Aptos, lie on uplifted marine terraces between the shoreline, and the northwest-trending Santa Cruz Mountains, part of California&rsquo;s Coast Ranges. The map area includes the northernmost part of Santa Cruz Harbor, and Moss Landing Harbor is located about 10 km south of the map area. The offshore part of the map area is entirely within California&rsquo;s State Waters and is also part of the Monterey Bay National Marine Sanctuary. In the southern part of the map area, the Soquel Canyon State Marine Conservation Area extends eastward from the limit of California&rsquo;s State Waters across Soquel Canyon. The Offshore of Aptos map area is on the western margin of North American Plate&mdash;the only continental margin in the world delineated largely by transform faults. The San Andreas Fault Zone cuts through the Santa Cruz Mountains just 3.5 km northeast of the map area. The San Gregorio Fault Zone, another major plate-boundary structure, cuts through Monterey Canyon about 13 km southwest of the map area. Ongoing deformation associated with and between these major fault zones has uplifted the Santa Cruz Mountains and formed well-developed sets of marine terraces that characterize almost the entire coastal zone of the map area. The offshore part of the map area consists of relatively flat and shallow continental shelf which is underlain by variable amounts (0 to 30 m) of upper Quaternary shelf, estuarine, and fluvial sediments deposited as sea level fluctuated in the late Pleistocene. Along the southern edge of the map area, the shelf is incised by the head of Soquel Canyon, a northeast-trending tributary to the west-trending Monterey Canyon. During the last sea-level lowstand (the Last Glacial Maximum [LGM], about 21,000 years ago) Soquel Creek flowed through a paleochannel across the emergent shelf into the head of Soquel Canyon. This canyon was disconnected from its onshore watershed during the post-LGM sea-level rise of about 125 m; the abandoned paleochannel was subsequently filled with marine sediment. Coastal sediment in the Offshore of Aptos map area is supplied by coastal watersheds and bluff erosion. Sediment transport in this part of the Santa Cruz littoral cell is primarily from the northwest to the southeast and terminates in the submarine Monterey Canyon. Longshore drift is impeded by jetties at Santa Cruz Harbor, resulting in high beach erosion rates east of the harbor. Sediment dredged from the harbor mouth (estimated 300,000 yds 3 /yr) is currently being used to nourish beaches directly to the east. Farther downcoast, the rapidly eroding beach at Capitola was stabilized by construction of an about 75-m-long groin. This part of central California is exposed to large North Pacific swells from the northwest throughout the year. North Pacific swell heights range from 2 to 10 meters, with larger swells occurring from October to May. During El Ni&ntilde;o-Southern Oscillation (ENSO) events, winter storms track farther south than they do in normal (non-ENSO) years, thereby impacting the map area more frequently and with waves of larger heights. Bedrock exposed in coastal cliffs is relatively erosion-resistant, and significant erosional events primarily are restricted to storm-wave activity that also erodes the overlying unconsolidated marine-terrace sediments. The Offshore of Aptos map area lies within the cold-temperate biogeographic zone that is called either the &ldquo;Oregonian&rdquo; province or the &ldquo;northern California ecoregion.&rdquo; This biogeographic province is maintained by the long-term stability of the southward-flowing California Current, the eastern limb of the North Pacific subtropical gyre that flows from southern British Columbia to Baja California. At its midpoint off central California, the California Current transports subarctic surface (0&ndash;500 m deep) waters southward, about 150 to 1,300 km from shore. Seasonal northwesterly winds that are, in part, responsible for the California Current, generate coastal upwelling. The south end of the Oregonian province is at Point Conception (about 310 km southeast of the map area), although its associated phylogeographic group of marine fauna may extend beyond to the area offshore of Los Angeles in southern California. The ocean off of central California has experienced a warming over the last 50 years that is driving an ecosystem shift away from the productive subarctic regime towards a depopulated subtropical environment. Seafloor habitats in the Offshore of Aptos map area lie within the &ldquo;Shelf&rdquo; Megahabitat class and include patchy rocky habitats, gravel-rich scour depressions, minor bedrock habitat, and predominantly sandy inner shelf. Sandy shelf habitats grade offshore to mud-dominated habitats on the midshelf in deeper water. Biological productivity resulting from coastal upwelling supports populations of Sooty Shearwater, Western Gull, Common Murre, Cassin&rsquo;s Auklet, and many other less populous bird species. In addition, an observable recovery of Humpback and Blue Whales has occurred in the area; both species are dependent on coastal upwelling to provide nutrients. California sea lions and Pacific harbor seals are abundant in the map area. Common bottlenose dolphins are often observed very close to shore and in the surf zone. The large extent of exposed inner shelf bedrock supports large forests of &ldquo;bull kelp,&rdquo; which is well adapted for high-wave-energy environments. The kelp beds are the northernmost known habitat for the population of southern sea otters. Common fish species found in the kelp beds and rocky reefs include blue rockfish, black rockfish, olive rockfish, kelp rockfish, gopher rockfish, black-and-yellow rockfish, painted greenling, kelp greenling, and lingcod.

California

California State Waters Map Series — Offshore of Monterey, California

Introduction In 2007, the California Ocean Protection Council initiated the California Seafloor Mapping Program (CSMP), designed to create a comprehensive seafloor map of high-resolution bathymetry, marine benthic habitats, and geology within the 3-nautical-mile limit of California’s State Waters. The CSMP approach is to create highly detailed seafloor maps through collection, integration, interpretation, and visualization of swath bathymetry data, acoustic backscatter, seafloor video, seafloor photography, high-resolution seismic-reflection profiles, and bottom-sediment sampling data. The map products display seafloor morphology and character, identify potential marine benthic habitats, and illustrate both the surficial seafloor geology and shallow subsurface geology. The Offshore of Monterey map area in central California is located on the Pacific Coast, about 120 km south of San Francisco. Incorporated cities in the map area include Seaside, Monterey, Marina, Pacific Grove, Carmel-by-the-Sea, and Sand City. The local economy receives significant resources from tourism, as well as from the Federal Government. Tourist attractions include the Monterey Bay Aquarium, Cannery Row, Fisherman’s Wharf, and the many golf courses near Pebble Beach, and the area serves as a gateway to the spectacular scenery and outdoor activities along the Big Sur coast to the south. Federal facilities include the Army’s Defense Language Institute, the Naval Postgraduate School, and the Fleet Numerical Meteorology and Oceanography Center (operated by the Navy). In 1994, Fort Ord army base, located between Seaside and Marina, was closed; much of former army base land now makes up the Fort Ord National Monument, managed by the U.S. Bureau of Land Management as part of the National Landscape Conservation System. In addition, part of the old Fort Ord is now occupied by California State University, Monterey Bay. The offshore part of the map area lies entirely within the Monterey Bay National Marine Sanctuary, one of the nation’s largest marine sanctuaries. State beaches and parks within the map area include Fort Ord Dunes State Park and the Marina, Monterey, and Asilomar State Beaches, as well as Carmel River State Beach, which includes the Carmel River Lagoon and Wetland Natural Preserve. The map area also includes all or part of several State Marine Protected Areas, including the Carmel Pinnacles, Asilomar, and Lovers Point–Julia Platt State Marine Reserves, as well as the Carmel Bay, Pacific Grove Marine Gardens, Edward F. Ricketts, and Portuguese Ledge State Marine Conservation Areas. The coastal zone in the map area is characterized by two distinct physiographies. From Marina to Monterey, sandy beaches are backed by a belt of sand dunes, as much as 30 to 40 m high and as wide as 8 km. The Salinas River supplies the sand for the beaches and dunes. Nearshore sediment transport is primarily to the south, in the southern Monterey littoral cell. Along the Monterey peninsula, which lies at the north end of the rugged Santa Lucia Range, coastal relief is very different. The peninsula is characterized largely by low marine terraces that formed mostly on hard and relatively stable granitic bedrock. Carmel Beach in Carmel-by-the-Sea is the longest continuous beach in this area; bedrock points and small pocket beaches characterize most of the rest of the peninsula. The Carmel River littoral cell extends along the coast from Point Pinos to Point Lobos (just south of the map area), including Carmel Beach; sediment transport is primarily to the south. The granitic rocks that crop out so prominently along the Monterey peninsula make up part of the Salinian block, a crustal terrane that in this area lies west of the San Andreas Fault and east of the San Gregorio Fault. The strike-slip San Andreas Fault Zone, which lies just 26 km east of the map area, is the most important structure within the Pacific–North American transform plate boundary. The San Gregorio Fault, a secondary fault within the distributed plate boundary, cuts through (and is roughly aligned with) Carmel Canyon, a submarine canyon in the southwest corner of the map area that is part of the Monterey Canyon system. The San Gregorio Fault Zone is part of a fault system that is present predominantly in the offshore for about 400 km, from Point Conception in the south (where it is known as the Hosgri Fault) to Bolinas and Point Reyes in the north. The offshore part of the map area primarily consists of relatively flat continental shelf, bounded on the west by the steep flanks of Carmel Canyon. Shelf width varies from 2 to 3 km in the southern part of the map area, near the mouth of Carmel Canyon, to 14 km in Monterey Bay. Bedrock beneath the shelf is overlain in many areas by variable amounts (0 to 16 m) of upper Quaternary shelf and nearshore sediments deposited as sea level fluctuated in the late Pleistocene. “Soft-induration,” unconsolidated sediment is the dominant (about 63 percent) habitat type on the continental shelf, followed by “hard-induration” rock and boulders (about 34 percent) and “mixed-induration” substrate (about 3 percent). At water depths of about 100 to 130 m, the shelf break approximates the shoreline during the sea-level lowstand of the Last Glacial Maximum, about 21,000 years ago. Carmel Canyon and other parts of the Monterey Canyon system in the map area extend from the shelf break to water depths that reach 1,600 m. Most of the extensive incision of the shelf break and canyon flanks probably occurred during repeated Quaternary sea-level lowstands. The relatively straight floor of Carmel Canyon notably is aligned with the San Gregorio Fault Zone. Mixed hard-soft substrate is the most common (about 51 percent) habitat type in Carmel Canyon; hard bedrock and soft, unconsolidated sediment cover about 40 percent and 9 percent of canyon habitat, respectively. This part of the central California coast is exposed to large North Pacific swells from the northwest throughout the year. Wave heights range from 2 to 10 m, the larger swells occurring from October to May. During El Niño–Southern Oscillation (ENSO) events, winter storms track farther south than they do in normal (non-ENSO) years, thereby impacting the map area more frequently and with waves of larger heights. Benthic species observed in the map area are natives of the cold-temperate biogeographic zone that is called either the “Oregonian province” or the “northern California ecoregion.” This biogeographic province is maintained by the long-term stability of the southward-flowing California Current, the eastern limb of the North Pacific subtropical gyre that flows from southern British Columbia to Baja California. Biological productivity resulting from coastal upwelling supports populations of Sooty Shearwater, Western Gull, Common Murre, Cassin’s Auklet, and many other less populous bird species. An observable recovery of Humpback and Blue Whales has occurred in the area; both species are dependent on coastal upwelling to provide nutrients. The large extent of exposed inner shelf bedrock supports large forests of “bull kelp,” which is well adapted for high-wave-energy environments. The kelp beds are well-known habitat for the population of southern sea otters. Common fish species found in the kelp beds and rocky reefs include lingcod and various species of rockfish and greenling.

California

Predicting sea-level rise vulnerability of terrestrial habitat and wildlife of the Northwestern Hawaiian Islands

If current climate change trends continue, rising sea levels may inundate low-lying islands across the globe, placing island biodiversity at risk. Recent models predict a rise of approximately one meter (1 m) in global sea level by 2100, with larger increases possible in areas of the Pacific Ocean. Pacific Islands are unique ecosystems home to many endangered endemic plant and animal species. The Northwestern Hawaiian Islands (NWHI), which extend 1,930 kilometers (km) beyond the main Hawaiian Islands, are a World Heritage Site and part of the Papahanaumokuakea Marine National Monument. These NWHI support the largest tropical seabird rookery in the world, providing breeding habitat for 21 species of seabirds, 4 endemic land bird species and essential foraging, breeding, or haul-out habitat for other resident and migratory wildlife. In recent years, concern has grown about the increasing vulnerability of the NWHI and their wildlife populations to changing climatic patterns, particularly the uncertainty associated with potential impacts from global sea-level rise (SLR) and storms. In response to the need by managers to adapt future resource protection strategies to climate change variability and dynamic island ecosystems, we have synthesized and down scaled analyses for this important region. This report describes a 2-year study of a remote northwestern Pacific atoll ecosystem and identifies wildlife and habitat vulnerable to rising sea levels and changing climate conditions. A lack of high-resolution topographic data for low-lying islands of the NWHI had previously precluded an extensive quantitative model of the potential impacts of SLR on wildlife habitat. The first chapter (chapter 1) describes the vegetation and topography of 20 islands of Papahanaumokuakea Marine National Monument, the distribution and status of wildlife populations, and the predicted impacts for a range of SLR scenarios. Furthermore, this chapter explores the potential effects of SLR on wildlife breeding habitats for each island. The subsequent chapter (chapter 2) details a study of the Laysan Island ecosystem, describing a quantitative model that incorporates SLR, storm wave, and rising groundwater inundation. Wildlife, storm, and oceanographic data allowed for an assessment of the phenological and spatial vulnerability of Laysan Island's breeding bird species to SLR and storms. Using remote sensing and geospatial techniques, we estimated topography, classified vegetation, modeled SLR, and evaluated a range of climate change scenarios. On the basis of high-resolution airborne data collected during 2010-11 (root-mean-squared error = 0.05-0.18 m), we estimated the maximum elevation of 20 individual islands extending from Kure Atoll to French Frigate Shoals (range: 1.8-39.7 m) and computed the mean elevation (1.7 m, standard deviation 1.1 m) across all low-lying islands. We also analyzed general climate models to describe rainfall and temperature scenarios expected to influence adaptation of some plants and animals for this region. Outcomes for the NWHI predicted an increase in temperature of 1.8-2.6 degrees Celsius (&deg;C) and an annual decrease in precipitation of 24.7-76.3 millimeters (mm) across the NWHI by 2100. Our models of passive SLR (excluding wave-driven effects, erosion, and accretion) showed that approximately 4 percent of the total land area in the NWHI will be lost with scenarios of +1.0 m of SLR and 26 percent will be lost with +2.0 m of SLR. Some atolls are especially vulnerable to SLR. For example, at Pearl and Hermes Atoll our analysis indicated substantial habitat losses with 43 percent of the land area inundated at +1.0 m SLR and 92 percent inundated at +2.0 m SLR. Across the NWHI, seven islands will be completely submerged with +2.0 m SLR. The limited global ranges of some tropical nesting birds make them particularly vulnerable to climate change impacts in the NWHI. Climate change scenarios and potential SLR impacts presented here emphasize the need for early climate change adaptation and mitigation planning, especially for species with limited breeding distributions and/or ranges restricted primarily to the low-lying NWHI: Cyperus pennatiformis var. bryanii , Black-footed Albatross ( Phoebastria nigripes ), Laysan Albatross ( P. immutabilis ), Bonin Petrel ( Pterodroma hypoleuca ), Gray-backed Tern ( Onychoprion lunatus ), Laysan Teal ( Anas laysanensis ), Laysan Finch ( Telespiza cantans ), and Hawaiian monk seal ( Monachus schauinslandi ). Furthermore, SLR scenarios that include the effects of wave dynamics and groundwater rise may indicate amplified vulnerability to climate change driven habitat loss on low-lying islands. In chapter 2, we incorporated the combined effects of SLR, dynamic wave-driven inundation, and rising groundwater in a quantitative study specifically for the Laysan Island ecosystem. This is the first hydrodynamic model to simulate the combined impacts of SLR and wave-driven inundation in the NWHI. We developed a high-resolution digital elevation model (mean vertical accuracy of 0.32 m) for the island. Then using recent satellite imagery, geospatial models, and historical oceanographic, storm, and biological data we estimated potential inundation extent, habitat loss, and wildlife population impacts for a range of potential SLR scenarios (0.00, +0.50, +1.00, +1.50, and +2.00 m) that may occur over the next century. Additionally, we estimated the carrying capacity of Laysan Island for five species based on the available population monitoring data and described how potential losses in nesting habitat could influence population dynamics for Black-footed Albatross, Laysan Albatross, Red-footed Booby (Sula sula), Laysan Teal, and Laysan Finch. For some other seabird populations (Masked Booby, S. dactylatra ; Brown Booby, S. leucogaster ; Great Frigatebird, Fregata minor ; and Sooty Tern, Onychoprion fuscata ), we used recent colony distribution data, land cover maps, and nesting behavior to estimate potential losses of nesting habitat from SLR and wave-driven inundation. We observed far greater potential impacts of SLR to wildlife with the dynamic wave-driven modeling approach than with the passive modeling approach. Depending on SLR scenario and coastal orientation, during storms under a +2.00 m SLR scenario, the wave-driven inundation model predicted three times more inundation than the passive model (17.2 percent of total terrestrial area versus 4.6 percent, respectively). Large-wave events generally added 1 m of water height to passive inundation surfaces, therefore our dynamic models (during storm events) forecasted comparable inundation extents earlier than passive models. Although wave-driven water levels were highest in the northwest quadrant of Laysan Island, the greatest extent of inundation occurred in the southeast where coastal dunes less than 3 m above mean sea level provide little protection from wave-driven inundation. When wave-driven inundation was included in the SLR model for Laysan Island greater nesting habitat loss and potential impacts on wildlife population dynamics were predicted. The consequences of habitat loss due to SLR may be worse for species with colonies in the wave-exposed coastal zones (for example, Black-footed Albatross) and for populations already near the island's carrying capacity (for example, Laysan Teal). Species whose peak incubation and chick-rearing periods coincide with seasonally high wave heights also will be increasingly vulnerable, especially those species nesting on the ground in areas vulnerable to inundation, such as Gray-backed Tern and Black-footed Albatross. Other species that have space for population growth, or are not restricted to a narrow range of habitat types on Laysan (for instance, Sooty Terns), may be less sensitive to habitat loss from SLR over the next century. Our assessments of inundation risk, habitat loss, and wildlife species vulnerability synthesize current knowledge about individual islands and contribute to a broader understanding of the impacts of inundation from SLR and storm-induced waves. Yet, most NWHI and their bird populations lack monitoring data to evaluate adaptations to and impacts of climate change. Exceptions include some data sets from long-term monitoring of wildlife populations, tides, or weather at French Frigate Shoals, Laysan Island, and Midway Atoll. These data sets are potentially valuable baselines, which could be informative for adaptive learning (integrating management and science) to predict, adapt, and mitigate the effects of climate change on NWHI wildlife in the future. This study provides the first quantitative vulnerability assessment for all of the low-lying NWHI, and results identify biological communities, locales, and resident endangered species of Papahanaumokuakea Marine National Monument expected to be at risk from SLR. This report is also intended as a reference for managers and conservation planners, a tool to identify and potentially reduce uncertainty, and a starting place for developing climate change monitoring priorities and future scientific studies.

Hawai'i