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Results for “Limnology and Oceanography - Letters”

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At least 91 records · Page 5Linked to original sources
USGS2023

A continuous classification of the 476,697 lakes of the conterminous US based on geographic archetypes

A variety of classification approaches are used to facilitate understanding, prediction, monitoring, and the management of lakes. However, broad-scale applicability of current approaches is limited by either the need for in situ lake data, incompatibilities among approaches, or a lack of empirical testing of approaches based on ex situ data. We developed a new geographic classification approach for 476,697 lakes ≥ 1 ha in the conterminous U.S. based on lake archetypes representing end members along gradients of multiple geographic features. We identified seven lake archetypes with distinct combinations of climate, hydrologic, geologic, topographic, and morphometric properties. Individual lakes were assigned weights for each of the seven archetypes such that groups of lakes with similar combinations of archetype weights tended to cluster spatially (although not strictly contiguous) and to have similar limnological properties (e.g., concentrations of nutrients, chlorophyll a (Chl a ), and dissolved organic carbon). Further, archetype lake classification improved commonly measured limnological relationships (e.g., between nutrients and Chl a ) compared to a global model; a discrete archetype classification slightly outperformed an ecoregion classification; and considering lakes as continuous mixtures of archetypes in a more complex model further improved fit. Overall, archetype classification of US lakes as continuous mixtures of geographic features improved understanding and prediction of lake responses to limnological drivers and should help researchers and managers better characterize and forecast lake states and responses to environmental change.

conterminous United States↗
USGS2024

Deep learning of estuary salinity dynamics is physically accurate at a fraction of hydrodynamic model computational cost

Salinity dynamics in the Delaware Bay estuary are a critical water quality concern as elevated salinity can damage infrastructure and threaten drinking water supplies. Current state-of-the-art modeling approaches use hydrodynamic models, which can produce accurate results but are limited by significant computational costs. We developed a machine learning (ML) model to predict the 250 mg L −1 Cl − isochlor, also known as the “salt front,” using daily river discharge, meteorological drivers, and tidal water level data. We use the ML model to predict the location of the salt front, measured in river miles (RM) along the Delaware River, during the period 2001–2020, and we compare predictions of the ML model to the hydrodynamic Coupled Ocean–Atmosphere-Wave-Sediment Transport (COAWST) model. The ML model predicts the location of the salt front with greater accuracy (root mean squared error [RMSE] = 2.52 RM) than the COAWST model does (RMSE = 5.36); however, the ML model struggles to predict extreme events. Furthermore, we use functional performance and expected gradients, tools from information theory and explainable artificial intelligence, to show that the ML model learns physically realistic relationships between the salt front location and drivers (particularly discharge and tidal water level). These results demonstrate how an ML modeling approach can provide predictive and functional accuracy at a significantly reduced computational cost compared to process-based models. In addition, these results provide support for using ML models in operational forecasting, scenario testing, management decisions, hindcasting, and resulting opportunities to understand past behavior and develop hypotheses.

Limnology and Oceanography↗
USGS2024

Sight and blindness: The relationship between ostracod eyes, water depth, and light availability in the Arctic Ocean

Eye loss has been a long-standing interest in evolutionary biology. Many organisms that inhabit environments without light penetration, for example the deep sea, exhibit eye loss and thus become blind. However, water-depth distribution of eyes in marine organisms is poorly understood. Ostracods are widely distributed crustaceans, and many sighted marine ostracods have eye tubercles (lenses) on their shells. Since eye tubercles are visible on the shells illustrated in much literature, it is easy to determine their presence or absence via a literature survey. Here, we used a large Arctic-wide ostracod census dataset (Arctic Ostracode Database) to calculate the eye index (the percentage of species with eyes), and compare them with water depth and light availability. As water depth increases, eye index values decrease and become constantly zero in water deeper than 1000 m. Similar decline of sighted species with increasing depth is also known in isopods and amphipods, suggesting that it may be common in other crustaceans and perhaps in deep-sea organisms in general. We also show that eye index values increase as light availability increases. This study is the first to quantify how distributions of sighted and blind species change with light availability, giving baseline information on vision in the deep sea.

Limnology and Oceanography↗
USGS2024

Effect of a dense inflow on the stratification of a steep-side lake

We detail the effect of a small stream of dense inflow that significantly altered the stratification and water quality in a constructed water body in northern British Columbia, Canada. As the dense inflow passed through the epilimnion of the steep-sided lake, it entrained relatively large quantities of water. The resulting mixture of dense inflow and entrained epilimnetic water sank to the bottom of the lake. The removal of water from the epilimnion due to entrainment reduced the epilimnetic thickness. This opposes the normal process of epilimnetic deepening due to wind and convective cooling. The flux of fluid entrained into the dense inflow was calculated to be between 4 and 14 times the inflow, depending primarily on the thickness of the epilimnion. The entrainment had four major effects: (1) it reduced the residence time of the epilimnion from half a year to less than a month; (2) it removed the freshwater cap that resulted from spring ice melt; (3) it enabled fall turnover, which further enhanced deep oxygen content and helped to prevent meromixis from developing in the lake; and (4) it produced a rapid decline in contaminant (i.e., zinc) concentrations in the epilimnion, which received dissolved metals inputs from oxidized sulfide minerals exposed in the subaerial walls of the lake. Given the wide variety of inflows to inland water bodies, some of which are at least seasonally dense, an understanding of the mechanisms detailed here can inform lake management in general, and more specifically, management of water quality in mine-impacted water bodies.

British Columbia↗
USGS2024

Invertebrate trophic structure on marine ferromanganese and phosphorite hardgrounds

The Southern California Borderland hosts a variety of geologic and oceanographic features that allow for diverse habitats to occur in a restricted region with a strong oxygen minimum zone (OMZ) and hard substrates. These include ferromanganese (FeMn) crusts and phosphorites targeted for deep-seabed mining in other regions. Baseline studies regarding hardground macro- (> 0.3 mm) and megafaunal (> 2 cm) invertebrates are lacking, although they contribute to understanding nutrient cycling and resilience of deep-sea communities to ocean deoxygenation, fishing, or mineral extraction. With the goal of understanding how substrate type, depth, and dissolved oxygen concentration influence invertebrate trophic structure, we surveyed δ 13 C and δ 15 N values of invertebrates on hard substrates on the Southern California Borderland margin along a depth gradient (120–2400 m) through the OMZ at inshore (< 100 km from shore) and offshore (100–250 km from shore) sites, using generalized additive models and community-level metrics. Macrofaunal isotopic values correlate with substrate type, exhibiting higher trophic diversity on FeMn crusts and specialized communities on phosphorites. Megafaunal isotopic values correlate with proximity to shore; animals offshore seem to depend more on phytoplanktonic production than animals inshore. In general, δ 15 N increased with decreasing dissolved oxygen and increasing depth, possibly due to remineralization processes within the OMZ and with depth. We discuss how feeding modes and community composition might influence the observed patterns. This study elucidates the importance of the environmental context in shaping invertebrate trophic structure on continental margins and provides baseline knowledge that may be useful in regions where these minerals are targeted for extraction.

Limnology and Oceanography↗
USGS2024

Gulf Stream intrusion and deep current upwelling drive dynamic patterns of temperature and food supply within cold-water coral reefs

One of the most significant features of the Northwest Atlantic, the Gulf Stream influences high magnitude environmental fluctuations in deep habitats across the South Atlantic Bight. Amid this variability, the Blake Plateau harbors extensive reefs formed by cold-water corals that were previously assumed to rely on narrow ranges of temperature, currents, and particulate supply. A benthic lander collected near-bed conditions at the Richardson Reef Complex, a cold-water reef dominated by the scleractinian Desmophyllum pertusum at 830 m within the path of the Gulf Stream. Specific behavior of the Gulf Stream resulted in recurring environmental patterns at depth. During offshore meanders, deep stream components intruded onto the reef and caused rapid (3.74°C per hour) temperature increases up to 10.8°C (> 5°C above the site mean) and increased chlorophyll. Within 2 d of peak temperatures, intrusions were replaced by strong, turbid upwelling currents that rapidly cooled the site to temperature minima (4.13°C). While considerable environmental variability from the Gulf Stream may otherwise implicate a thermally stressful setting for corals, high-temperature events were likely mitigated by their short duration (< 37.4 h) and physical coupling with enhanced organic material. This hypothesis was supported by high-density clustering of D. pertusum occurrences within 50 km around the Gulf Stream's position along the South Atlantic Bight. This suggests that cold-water corals experiencing environmental variability can be sustained by relationships between food supply, temperature, and currents that vary in strength along stochastic time scales, shedding further light on the niche of cold-water corals.

Limnology and Oceanography↗
USGS2025

Ice thickness regulates heat flux in permanently ice-covered lakes

The permanently ice-covered lakes of Taylor Valley, Antarctica, are rare ecosystems where permanent ice cover and year-round vertically stable water columns provide critical redox zones for cold-adapted microorganisms. Using 30 yr of limnological data from the McMurdo Dry Valleys Long-Term Ecological Research program, we assessed the water column heat flux of four permanently ice-covered lakes in the context of global lake ice decline and lake warming. Our study reveals that heat flux in Taylor Valley lakes is driven by ice cover dynamics, both annual changes in ice thickness as well as overall ice thickness. During periods of ice thinning, like those observed from 2020 to 2023, the lakes accumulate heat. Lake Fryxell, Lake Hoare, and West Lake Bonney have repeatedly cooled and warmed over our record, with only East Lake Bonney cooling due to lake level rise. Ice thickness is largely synchronous among the four lakes, with periods of asynchronicity likely caused by lake-specific changes in surface albedo driven by changes in optical properties of the ice covers and in-ice sediment dynamics.

Limnology and Oceanography↗
USGS2025

The influence of mountain streamflow on nearshore ecosystem metabolism in a large, oligotrophic lake across a drought and a wet year

The influence of streamflow can be highly heterogeneous around lake edges, making it challenging to predict how benthic productivity in the littoral zone responds to hydroclimatic change. The degree to which streamflow affects nearshore productivity varies as a function of catchment characteristics, internal lake morphometry, and processes. This study investigates the relative influence of streamflow on nearshore metabolism (e.g., gross primary productivity [GPP], ecosystem respiration [ER], and net ecosystem productivity [NEP]) for shores with large, small, or no stream inflows (four locations across two shores) during two contrasting water years (one drought and one wet) in Lake Tahoe (Nevada/California, USA). Using Bayesian structural equation modeling, we found streamflow decreased water temperature, benthic light, and GPP across both years. Compared to the drought year, the subsequent wet year had 54% higher annual streamflow, 37% less light, and lower NEP at locations with large or small inflows (39% Δ −0.32 mmol O₂ m −3 d −1% and 49% Δ −1.19 mmol O₂ m −3 d −1 , respectively). During the wet year, we observed a 68% increase in the negative association between streamflow and nearshore GPP at the large inflow and a 62% decrease in the positive association between streamflow and GPP at the small inflow. This work demonstrates how oligotrophic littoral productivity varies across shorelines and in response to hydrological conditions, with streamflow and precipitation exerting contrasting effects depending on the proximity to inflowing streams. Our results suggest future lake responses to climate volatility depend on spatial and temporal hydrologic connectivity to catchments and upland processes.

California, Nevada↗
USGS2025

Seasonal variation in bay-marsh sediment exchange through a back-barrier salt marsh tidal creek

Salt marsh resilience to sea-level rise largely depends on the balance of sediment exchanges with surrounding bays. In this study, we investigate mechanisms that determine residual sediment fluxes using continuous measurements of bay-marsh sediment exchange conducted in a tidal creek spanning 13 months (753 tidal cycles) in an intertidal marsh recently subsidized with sediment via thin-layer placement. The maximum water level in each tidal cycle varied over seasonal and fortnightly timescales and was driven by a combination of the seasonal cycle in mean sea level (maximum in September, minimum in January) and the fortnightly spring-neap cycle. Residual water fluxes tended to be ebb-directed during overbank tides, possibly due to water crossing creekshed boundaries in the intertidal zone when water levels were sufficiently high. Sediment concentrations on the ebb of overbank tides exceeded those of their corresponding floods, but only for tidal cycles in which water temperatures exceeded 14°C. The interaction of these dynamics resulted in over 90% of the net sediment export from the creek occurring during overbank tides during warmer months—conditions met in 30% of the observed tidal cycles. These findings exemplify the importance of accounting for seasonality in sediment fluxes when assessing sediment budgets of salt marshes and illustrate how sediment budgets assessed with shorter duration datasets may exhibit seasonal bias. Additionally, they suggest that sediment retention for thin-layer sediment placement projects may be high over the course of the first year after sediment subsidies are deployed.

New Jersey↗
USGS2025

Urban heterogeneity drives dissolved organic matter sources, transport, and transformation from local to macro scales

Urbanization reshapes dissolved organic matter (DOM) sources, transport, and transformations through changes in vegetation, hydrology, and management of waste and water. Yet the impacts of urbanization on DOM are variable within and among cities. Predicting heterogeneous responses to urbanization is challenged by diverse human activities and underlying biophysical variation along stream networks. Using data from the 486 largest urban areas in the continental United States and seven focal cities, we identified macro and local scale urban gradients in social, built, and biophysical factors that are expected to shape DOM. We used these gradients and the literature to develop hypotheses about heterogeneity in DOM quantity and quality within and among cities. Interactions among landscape and infrastructure attributes across spatial and temporal scales result in heterogeneous responses in DOM. Characterizing and quantifying these inconsistent responses to urbanization in contrasting settings may help to better understand heterogeneity and identify generalities among urban watersheds.

continental United States↗
USGS2025

Discharge and nutrients interact to determine trophic structure in a wetland: Evidence from a landscape-scale manipulation

Identifying drivers of consumer biomass patterns and community structure is complex for managed freshwater ecosystems that are sensitive to nutrients and drought. In the Florida Everglades, flow restoration is expected to reintroduce discharge across an expansive wetland, yet most research on consumers has focused on water depth and dry disturbances. Low-velocity flow can mediate nutrient availability for basal food resources, but its scaled-up effects on consumer communities remain largely untested. We quantified consumer responses to a landscape-scale flow manipulation that created discharge variability along a 2.5-km path of interconnected shallow sloughs. Over 4 yr, we repeatedly sampled macroinvertebrates, small fishes, and large predatory fishes (standard length > 8 cm) in 26 sloughs—some along a flow path experiencing pulsed water releases and others in two non-flowing reference areas. We tested the effects of antecedent discharge on consumer biomass while accounting for local nutrient concentrations (total phosphorus). Discharge increased biomass across all consumer groups, particularly in oligotrophic sloughs. Conversely, eutrophic sloughs demonstrated stronger top-down effects on small fishes and macroinvertebrates, with discharge primarily benefiting large predatory fishes. Nutrient gradients preferentially increased large fishes and caused macroinvertebrate community shifts favoring herbivorous and possibly predation-resistant taxa. Structural equation modeling similarly indicated bottom-up support from discharge but stronger top-down control in nutrient-rich sloughs. These findings demonstrate that discharge and total phosphorus interactively produce distinct consumer biomass patterns. Flow restoration in oligotrophic Everglades sloughs is hypothesized to enhance aquatic consumer biomass across trophic levels, revealing an ecological benefit to slow-flowing ecosystems not previously recognized.

Florida↗
USGS2025

Ecophysiology of two mesophotic octocorals intended for restoration: Effects of light and temperature

Light and temperature are driving forces that shape the evolution and physiology of mesophotic organisms. On the Mississippi-Alabama continental shelf, octocorals dominate the mesophotic seascape and provide habitat for many fish and invertebrate species. Gaps in knowledge regarding the fundamental physiological responses of these species to light and temperature are of particular interest to restoration activities following the Deepwater Horizon oil spill. To address these gaps, the photobiology and thermal tolerance of Swiftia exserta and Muricea pendula were assessed in the field and laboratory. Pulse amplitude modulated fluorometry, histology, light microscopy, and epifluorescence imaging revealed low densities of photosynthetic endobionts in samples of S. exserta and none in samples of M. pendula collected near the determined bottom of the euphotic zone (51.45 m). Response to the recorded monthly mean habitat temperature range (18.5–25.4°C) was assessed using respirometry and polyp activity data from live corals exposed to temperatures between 18°C and 26°C. There was no significant difference in oxygen consumption for either species between 18°C and 26°C, and calculated Q 10 values were not significantly different from 1, thus suggesting that both species have a low sensitivity to the local thermal environment. However, a negative correlation between temperature and polyp activity suggests that M. pendula is more sensitive to higher temperatures than S. exserta . This study improves the understanding of the effects of light and temperature on mesophotic octocoral physiology and lays the foundation for future work to explore the thermal thresholds of each species and the endobiont–host relationship in S. exserta .

Alabama, Mississippi, South Carolina↗
USGS2025

Unique thermal mixing patterns in Lake Ontario revealed by novel year-round observations of thermal stratification

Year-round records of thermal stratification in the Great Lakes are rare, and there are few observations of thermal stratification during winter. In this paper, we analyze temperature data from 13 temperature logger chains and from over 130 benthic acoustic receivers that were deployed across Lake Ontario for 2 yr. The timing and duration of the fall overturn correlate with the local average water depth, and shallow sites (< 50 m depth) overturn up to a month before deep sites (> 100 m depths). Likewise, in spring, the shallow sites warm faster. Lake Ontario has partial ice cover, so wind-driven mixing stirs the water column throughout winter, and inverse thermal stratification is largely absent. The depth-averaged winter water temperatures vary between 0°C and 4°C, with the coldest temperatures (near 0.1°C) found in the shallow Kingston basin and warmest temperatures (near 4°C) at sites near the 244 m deep Rochester Basin. Lake Ontario appears to be a warm monomictic lake, rather than having a dimictic mixing pattern as previously described—there is no sustained ice cover or inverse stratification that inhibits vertical mixing in winter. Winter is a poorly understood season for many aquatic processes, including fish bioenergetics, fish distribution, biochemical processes, invertebrate distribution, and production. Moreover, the lack of knowledge of winter has hampered the use of correct initial conditions for running large lake hydrodynamic models.

Lake Ontario↗
USGS2026

Increasing artificial light at night enhances salmonid predator foraging efficiency in an urbanized lake

Artificial light at night (ALAN) poses a threat to ecosystems globally. It includes both direct and indirect light, or skyglow, which occurs when ALAN scatters in the atmosphere, extending beyond its original source. We analyzed ALAN trends in Lake Washington, WA, from 2014 to 2023 using Visible Infrared Imaging Radiometer Suite (VIIRS) nighttime light measurements, evaluated the relationship between in situ and satellite measurements, and modeled predator search volumes for a juvenile salmon predator, cutthroat trout ( Oncorhynchus clarki ), as a function of ambient light and turbidity conditions. Open water regions experienced significant increases in ALAN, while nearshore areas primarily showed no or negative trends, revealing the role of skyglow in shaping open water light environments. Using a visual foraging model for cutthroat trout, we found that juvenile salmon at the shallow southern pelagic site experienced light 28 times brighter, resulting in a 168% greater predation vulnerability than those at the northern site. In the Ship Canal, a narrow corridor for outmigrating salmon, predator search volumes were 249% higher than at the southern site. These contrasts in predation vulnerability demonstrate how local conditions influence predator–prey dynamics and provide critical insight for targeting mitigation of both nearshore and distant light sources.

Washington↗
USGS2018

Book review: Handbook of cyanobacterial monitoring and cyanotoxin analysis

Review of Meriluoto, Jussi, Lisa Spoof, and GeoffreyA. Codd [eds.]. 2017. Handbook of Cyanobacterial Monitoring and Cyanotoxin Analysis. John Wiley & Sons, Ltd.: Chichester, West Sussex, UK, ISBN 978‐1‐119‐06868‐6 (978‐1‐119‐06876‐1 eBook), DOI 10.1002/9781119068761.

Limnology and Oceanography Bulletin↗
USGS2021

The AEMON-J “Hacking Limnology” workshop series & virtual summit: Incorporating data science and open science in aquatic research

Following the 2020 “Virtual Summit: Incorporating Data Science and Open Science in Aquatic Research” (DSOS; Meyer and Zwart 2020 ), a grassroots group of scientists convened the 2nd Virtual DSOS Summit on 22–23 July 2021. DSOS combined forces with the Aquatic Ecosystem MOdeling Network - Junior (AEMON-J; https://github.com/aemon-j) to host a 4-d “Hacking Limnology” Workshop Series prior to the summit (13–16 July 2021). The aim was to focus more deeply on skill development and networking among early career researchers (ECRs), both of which are key to growing a workforce of data-intensive aquatic scientists (López Moreira M et al. in press; Meyer et al. 2021 a ). To support ECRs further, we hosted a virtual job board, where participants could note if they were either looking for employment or hiring for a position. Like the 2020 summit, there was high enthusiasm for both the summit and the workshops. In total, 686 people from over 50 countries registered for the AEMON-J Workshop Series and the DSOS Summit. Countries with the highest number of registrants included the United States (41%), Nigeria (20%), Canada (6%), Brazil (6%), and Germany (5%) (Fig. 1). To increase accessibility, there were no registration costs for the workshops and summit, and we centralized introductory training materials, coding scripts, and presentation recordings in one community website (https://aquaticdatasciopensci.github.io/; Fig. 2), which we hope will continue to support the AEMON-J and DSOS communities over time.

Limnology and Oceanography Bulletin↗
USGS2022

The Grand Caddis hatch of JASM 2022: Trichoptera natural history observations at the Joint Aquatic Sciences Meeting in Grand Rapids, Michigan (USA)

In a stroke of good luck for aquatic scientists and insect enthusiasts, the May 2022 Joint Aquatic Sciences Meeting (JASM) in Grand Rapids, Michigan coincided with a spectacular hatch of hydropsychid caddisflies. To estimate density, we enumerated caddisflies on 12 polarized window panels on the western face of the DeVos Place, which faced the Grand River. We found an average of 57.8 caddisflies per 2.0 × 2.3 m window panel (density of 12.6 caddisflies m −2 ). We observed American robins, swallows, sparrows, and jumping spiders preying and scavenging during the hatch. We also describe here our observations of a novel precopulatory behavior in the species Hydropsyche morosa , which we describe as a “head-to-tail” position. We discuss our natural history observations and share thoughts on how conferences can be a springboard for networking and collaborative science, natural history-focused or otherwise.

Michigan↗