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USGS2021

Techniques to improve ecological interpretability of black box machine learning models

Statistical modeling of ecological data is often faced with a large number of variables as well as possible nonlinear relationships and higher-order interaction effects. Gradient boosted trees (GBT) have been successful in addressing these issues and have shown a good predictive performance in modeling nonlinear relationships, in particular in classification settings with a categorical response variable. They also tend to be robust against outliers. However, their black-box nature makes it difficult to interpret these models. We introduce several recently developed statistical tools to the environmental research community in order to advance interpretation of these black-box models. To analyze the properties of the tools, we applied gradient boosted trees to investigate biological health of streams within the contiguous USA, as measured by a benthic macroinvertebrate biotic index. Based on these data and a simulation study, we demonstrate the advantages and limitations of partial dependence plots (PDP), individual conditional expectation (ICE) curves and accumulated local effects (ALE) in their ability to identify covariate–response relationships. Additionally, interaction effects were quantified according to interaction strength (IAS) and Friedman’s H 2 "> H 2 statistic. Interpretable machine learning techniques are useful tools to open the black-box of gradient boosted trees in the environmental sciences. This finding is supported by our case study on the effect of impervious surface on the benthic condition, which agrees with previous results in the literature. Overall, the most important variables were ecoregion, bed stability, watershed area, riparian vegetation and catchment slope. These variables were also present in most identified interaction effects. In conclusion, graphical tools (PDP, ICE, ALE) enable visualization and easier interpretation of GBT but should be supported by analytical statistical measures. Future methodological research is needed to investigate the properties of interaction tests. Supplementary materials accompanying this paper appear on-line.

Journal of Agricultural, Biological, and Environme↗

USGS2001

Seasonal and event-scale variations in solute chemistry for four Sierra Nevada catchments

Hydrobiogeochemical processes controlling stream water chemistry were examined in four small (<5 km2) catchments having contrasting bedrock lithologies in the western Sierra Nevada foothills of California. The Mediterranean climate with its cool/wet and hot/dry cycle produces strong seasonal patterns in hydrological, biological and geochemical processes. Stream water solutes fall into three general groups according to seasonal fluctuation in concentration: Strong, rainy season minimum-dry season maximum (Cl-, SO42-, base cations); weak, rainy season minimum-dry season maximum (Si); and rainy season maximum-dry season minimum (NO3- and K+). Solute dynamics in soil solutions and stream water suggest that mixing of drainage waters from bedrock and soil sources regulate stream water solute concentrations. Patterns are further altered by the leaching of solutes accumulated in the soil over the summer period of desiccation and the temporal discoupling of nutrient cycles that occurs due to differences in the timing between vegetation growth (late spring) and leaching (early winter). Solute concentrations are remarkably similar between watersheds with varying bedrock types, with the exception of nitrate, sulfate and bicarbonate. Three watersheds have nitrogen-bearing metasedimentary bedrock that contributes to elevated nitrate concentrations in stream waters. Watersheds whose bedrock includes mineralized veins of sulfide and carbonate minerals similarly have greater sulfate and bicarbonate concentrations in stream water. Hydrobiogeochemical processes are highly dynamic at the seasonal and storm-event temporal scales and spatially complex at the watershed scale making management of stream water chemical composition, such as nitrate concentrations, very challenging. ?? 2001 Elsevier Science B.V.

Journal of Hydrology↗

USGS2019

A bibliometric profile of the Remote Sensing Open Access Journal published by MDPI between 2009 and 2018

Remote Sensing Open Access Journal (RS OAJ) is an international leading journal in the field of remote sensing science and technology. It was first published in the year 2009 and is currently celebrating tenth year of publications. In this research, a bibliometric analysis of RS OAJ was conducted based on 5588 articles published during the 10-year (2009–2018) time-period. The bibliometric analysis includes a comprehensive set of indicators such as dynamics and trends of publications, journal impact factor, total cites, eigenfactor score, normalized eigenfactor, CiteScore, h-index, h-classic publications, most productive countries (or territories) and institutions, co-authorship collaboration about countries (territories), research themes, citation impact of co-occurrences keywords, intellectual structure, and knowledge commutation. We found that publications of RS OAJ presented an exponential growth in the past ten years. From 2010 to 2017 (for which complete years data were available), the h-index of RS OAJ is 67. From 2009–2018, RS OAJ includes publications from 129 countries (or territories) and 3826 institutions. The leading nations contributing articles, based on 2009–2018 data, and listed based on ranking were: China, United States, Germany, Italy, France, Spain, Canada, England, Australia, Netherlands, Japan, Switzerland and Austria. The leading institutions, also for the same period and listed based on ranking were: Chinese Academy of Sciences, Wuhan University, University of Chinese Academy of Sciences, Beijing Normal University, The university of Maryland, National Aeronautics and Space Administration, National Oceanic and Atmospheric Administration, China University of Geosciences, United States Geological Survey, German Aerospace Centre, University of Twente, and California Institute of Technology. For the year 2017, RS OAJ had an impressive journal impact factor of 3.4060, a CiteScore of 4.03, eigenfactor score of 0.0342, and normalized eigenfactor score of 3.99. In addition, based on 2009–2018, data co-word analysis determined that “remote sensing”, “MODIS”, “Landsat”, “LiDAR” and “NDVI” are the high-frequency of author keywords co-occurrence in RS OAJ. The main themes of RS OAJ are multi-spectral and hyperspectral remote sensing, LiDAR scanning and forestry remote sensing monitoring, MODIS and LAI data applications, Remote sensing applications and Synthetic Aperture Radar (SAR). Through author keywords citation impact analysis, we find the most influential keyword is Unmanned Aerial Vehicle (UAV), followed, forestry, Normalized Difference Vegetation Index (NDVI), terrestrial laser scanning, airborne laser scanning, forestry inventory, urban heat island, monitoring, agriculture, and laser scanning. By analyzing the intellectual structure of RS OAJ, we identify the main reference publications and find that the themes are about Random Forests, MODIS vegetation indices and image analysis, etc. RS OAJ ranks first in cited journals and third in citing, this indicates that RS OAJ has the internal knowledge flow. Our results will bring more benefits to scholars, researchers and graduate students, who hopes to get a quick overview of the RS OAJ. And this article will also be the starting point for communication between scholars and practitioners. Finally, this paper proposed a nuanced h-index (nh-index) to measure productivity and intellectual contribution of authors by considering h-index based on whether the one is first, second, third, or nth author. This nuanced approach to determining h-index of authors is powerful indicator of an academician’s productivity and intellectual contribution.

Remote Sensing↗

USGS2017

Integration of vegetation community spatial data into a prescribed fire planning process at Shenandoah National Park, Virginia (USA)

Many eastern forest communities depend on fire for regeneration or are enhanced by fire as a restoration practice. However, the use of prescribed fire in the mesic forested environments and the densely populated regions of the eastern United States has been limited. The objective of our research was to develop a science-based approach to prioritizing the use of prescribed fire in appropriate forest types in the eastern United States based on a set of desired management outcomes. Through a process of expert elicitation and data analysis, we assessed and integrated recent vegetation community mapping results along with other available spatial data layers into a spatial prioritization tool for prescribed fire planning at Shenandoah National Park (Virginia, USA). The integration of vegetation spatial data allowed for development of per-pixel priority rankings and exclusion areas enabling precise targeting of fire management activities on the ground, as well as a park-wide ranking of fire planning compartments. We demonstrate the use and evaluation of this approach through implementation and monitoring of a prescribed burn and show that progress is being made toward desired conditions. Integration of spatial data into the fire planning process has served as a collaborative tool for the implementation of prescribed fire projects, which assures projects will be planned in the most appropriate areas to meet objectives that are supported by current science.

Virginia↗

USGS2015

The rise of fire: Fossil charcoal in late Devonian marine shales as an indicator of expanding terrestrial ecosystems, fire, and atmospheric change

Fossil charcoal provides direct evidence for fire events that, in turn, have implications for the evolution of both terrestrial ecosystems and the atmosphere. Most of the ancient charcoal record is known from terrestrial or nearshore environments and indicates the earliest occurrences of fire in the Late Silurian. However, despite the rise in available fuel through the Devonian as vascular land plants became larger and trees and forests evolved, charcoal occurrences are very sparse until the Early Mississippian where extensive charcoal suggests well-established fire systems. We present data from the latest Devonian and Early Mississippian of North America from terrestrial and marine rocks indicating that fire became more widespread and significant at this time. This increase may be a function of rising O 2 levels and the occurrence of fire itself may have contributed to this rise through positive feedback. Recent atmospheric modeling suggests an O 2 low during the Middle Devonian (around 17.5%), with O 2 rising steadily through the Late Devonian and Early Mississippian (to 21–22%) that allowed for widespread burning for the first time. In Devonian-Mississippian marine black shales, fossil charcoal (inertinite) steadily increases up-section suggesting the rise of widespread fire systems. There is a concomitant increase in the amount of vitrinite (preserved woody and other plant tissues) that also suggests increased sources of terrestrial organic matter. Even as end Devonian glaciation was experienced, fossil charcoal continued to be a source of organic matter being introduced into the Devonian oceans. Scanning electron and reflectance microscopy of charcoal from Late Devonian terrestrial sites indicate that the fires were moderately hot (typically 500–600 °C) and burnt mainly surface vegetation dominated by herbaceous zygopterid ferns and lycopsids, rather than being produced by forest crown fires. The occurrence and relative abundance of fossil charcoal in marine black shales are significant in that these shales may provide a more continuous record of fire than is preserved in terrestrial environments. Our data support the idea that major fires are not seen in the fossil record until there is both sufficient and connected fuel and a high enough atmospheric O 2 content for it to burn.

American Journal of Science↗

USGS2023

Integrated rangeland fire management strategy actionable science plan completion assessment — Sagebrush and sage-grouse topic, 2015–20

Loss and degradation of sagebrush rangelands due to an accelerated invasive annual grass-wildfire cycle and other stressors are significant management, conservation, and economic issues in the western United States. These sagebrush rangelands comprise a unique biome spanning 11 states, support over 350 wildlife species, and provide important ecosystem services that include stabilizing the economies of western communities. Impacts to sagebrush ecosystem processes over large areas due to the annual grass-wildfire cycle necessitated the development of a coordinated, science-based strategy for improving efforts to achieve long-term protection, conservation, and restoration of sagebrush rangelands, which was framed in 2015 under the Integrated Rangeland Fire Management Strategy (IRFMS). Central to this effort was the development of an Actionable Science Plan (Plan) that identified 37 priority science needs (Needs) for informing the actions proposed under the 5 topics (Fire, Invasives, Restoration, Sagebrush and Sage-Grouse, Climate and Weather) that were part of the collective focus of the IRFMS. Notable keys to this effort were identification of the Needs co-produced by managers and researchers, and a focus on resulting science being “actionable.” Substantial investments aimed at fulfilling the Needs identified in the Plan have been made since its release in 2016. While the state of the science has advanced considerably, the extent to which knowledge gaps remain relative to identified Needs is relatively unknown. Moreover, new Needs have likely emerged since the original strategy as results from actionable science reveal new questions and possible (yet untested) solutions. A quantifiable assessment of the progress made on the original science Needs can identify unresolved gaps and new information that can help inform prioritization of future research efforts. This report details a systematic literature review that evaluated how well peer-reviewed journal articles and formal technical reports published between January 1, 2015, and December 31, 2020, addressed nine needs (hereinafter, “Needs”) identified under the Sagebrush and Sage-Grouse topic in the Plan. The topic outlined research Needs broadly focused on understanding sagebrush rangelands and population dynamics important for the conservation and management of sage-grouse and other sagebrush-reliant wildlife species. We established the level of progress towards addressing each Need following a standardized set of criteria, and developed summaries detailing how research objectives nested within Needs identified in the Plan (‘Next Steps’) were either addressed well, partially addressed or remain outstanding (in other words, addressed poorly) in the literature through 2020. Our searches resulted in the inclusion of 333 science products that at least partially addressed a Need identified in the Sagebrush and Sage-Grouse topic. The Needs that were well and partially addressed included: development of biome-wide mapping techniques that provide regularly updated grassland and shrubland vegetation layers (Need 4); generation of spatially explicit greater sage-grouse habitat suitability and population models (Need 5); identification of greater sage-grouse seasonal habitats (Need 6); identification of thresholds for the extent of threats, especially conifer expansion, above which greater sage-grouse and other sagebrush-obligate species cannot persist (Need 8); and studies of sagebrush community dynamics as those relate to management and restoration of sagebrush rangelands (Need 9). Needs addressed poorly included: investigations of factors conducive and restrictive to greater sage-grouse movement patterns and population connectivity (Need 1); investigations of livestock and other large ungulate (for example, feral horse) grazing effects on greater sage-grouse populations and habitats (Need 2); identification of thresholds of disturbance (especially renewable energy developments) below which greater sage-grouse and other sagebrush reliant species are not impacted (Need 3); and studies of habitat relationships for sagebrush-reliant species other than greater sage-grouse, songbirds, and small mammals (Need 7). The information provided in this assessment will assist updating the Plan along with other science strategies.

western United States↗

USGS2012

Development and application of methods used to source prehistoric Southwestern maize: a review

Archaeological cobs free of mineral contaminants should be used to source the soils in which they were grown. Mineral contaminants often contain much higher concentrations of metals than vegetal materials and can alter a cob’s apparent metal and heavy-isotope content. Cleaning a cob via immersion in an acid solution for more than a few minutes will result in the incongruent and sometimes complete leaching of metals, including strontium (Sr), from the cob. When using 87 Sr/ Sr to determine the location of potential agriculture fields, it is best to either integrate several depth-integrated soil samples or to integrate several vegetation samples from individual fields. Biologically labile Sr in semi-arid Southwestern soils largely originates from eolian source or sources and usually is not derived from underlying bedrock. Existing Sr-isotope data indicate that archaeological cobs from Aztec Ruins came from either the Mesa Verde-McElmo Dome or Totah areas, that Pueblo Bonito and Chetro Ketl cobs, from Chaco Canyon that predate A.D. 1130, probably came from the Rio Chaco corridor, and that cobs from Chaco Canyon, that postdate A.D. 1130, probably came from either the Totah or Zuni areas.

Journal of Archaeological Science↗

USGS2003

Imaging spectroscopy: Earth and planetary remote sensing with the USGS Tetracorder and expert systems

Imaging spectroscopy is a tool that can be used to spectrally identify and spatially map materials based on their specific chemical bonds. Spectroscopic analysis requires significantly more sophistication than has been employed in conventional broadband remote sensing analysis. We describe a new system that is effective at material identification and mapping: a set of algorithms within an expert system decision‐making framework that we call Tetracorder. The expertise in the system has been derived from scientific knowledge of spectral identification. The expert system rules are implemented in a decision tree where multiple algorithms are applied to spectral analysis, additional expert rules and algorithms can be applied based on initial results, and more decisions are made until spectral analysis is complete. Because certain spectral features are indicative of specific chemical bonds in materials, the system can accurately identify and map those materials. In this paper we describe the framework of the decision making process used for spectral identification, describe specific spectral feature analysis algorithms, and give examples of what analyses and types of maps are possible with imaging spectroscopy data. We also present the expert system rules that describe which diagnostic spectral features are used in the decision making process for a set of spectra of minerals and other common materials. We demonstrate the applications of Tetracorder to identify and map surface minerals, to detect sources of acid rock drainage, and to map vegetation species, ice, melting snow, water, and water pollution, all with one set of expert system rules. Mineral mapping can aid in geologic mapping and fault detection and can provide a better understanding of weathering, mineralization, hydrothermal alteration, and other geologic processes. Environmental site assessment, such as mapping source areas of acid mine drainage, has resulted in the acceleration of site cleanup, saving millions of dollars and years in cleanup time. Imaging spectroscopy data and Tetracorder analysis can be used to study both terrestrial and planetary science problems. Imaging spectroscopy can be used to probe planetary systems, including their atmospheres, oceans, and land surfaces.

Journal of Geophysical Research E: Planets↗

USGS2002

Basis and methods of NASA airborne topographic mapper lidar surveys for coastal studies

This paper provides an overview of the basic principles of airborne laser altimetry for surveys of coastal topography, and describes the methods used in the acquisition and processing of NASA Airborne Topographic Mapper (ATM) surveys that cover much of the conterminous US coastline. This form of remote sensing, also known as "topographic lidar", has undergone extremely rapid development during the last two decades, and has the potential to contribute within a wide range of coastal scientific investigations. Various airborne laser surveying (ALS) applications that are relevant to coastal studies are being pursued by researchers in a range of Earth science disciplines. Examples include the mapping of "bald earth" land surfaces below even moderately dense vegetation in studies of geologic framework and hydrology, and determination of the vegetation canopy structure, a key variable in mapping wildlife habitats. ALS has also proven to be an excellent method for the regional mapping of geomorphic change along barrier island beaches and other sandy coasts due to storms or long-term sedimentary processes. Coastal scientists are adopting ALS as a basic method in the study of an array of additional coastal topics. ALS can provide useful information in the analysis of shoreline change, the prediction and assessment of landslides along seacliffs and headlands, examination of subsidence causing coastal land loss, and in predicting storm surge and tsunami inundation.

Journal of Coastal Research↗

USGS2007

Late Quaternary paleoenvironments of an ephemeral wetland in North Dakota, USA: Relative interactions of ground-water hydrology and climate change

This study of fossils (pollen, plant macrofossils, stomata and fish) and sediments (lithostratigraphy and geochemistry) from the Wendel site in North Dakota, USA, emphasizes the importance of considering ground-water hydrology when deciphering paleoclimate signals from lakes in postglacial landscapes. The Wendel site was a paleolake from about 11,500 14C yr BP to 11,100 14C yr BP. Afterwards, the lake-level lowered until it became a prairie marsh by 9,300 14C yr BP and finally, at 8,500 14C yr BP, an ephemeral wetland as it is today. Meanwhile, the vegetation changed from a white spruce parkland (11,500 to 10,500 14C yr BP) to deciduous parkland, followed by grassland at 9,300 14C yr BP. The pattern and timing of these aquatic and terrestrial changes are similar to coeval kettle lake records from adjacent uplands, providing a regional aridity signal. However, two local sources of ground water were identified from the fossil and geochemical data, which mediated atmospheric inputs to the Wendel basin. First, the paleolake received water from the melting of stagnant ice buried under local till for about 900 years after glacier recession. Later, Holocene droughts probably caused the lower-elevation Wendel site to capture the ground water of up-gradient lakes. ?? 2007 Springer Science+Business Media, Inc.

Journal of Paleolimnology↗

USGS2026

Advances and applications of Unoccupied Aerial Systems (UAS) research in landscape ecology

Landscape ecologists have long depended on satellite and aerial remote sensing to address questions about landscape pattern and process, structure, and change (Foody 2023 ). Unoccupied aerial systems/vehicles (UAS/UAV, a.k.a. drones) technology is becoming an increasingly popular research tool in environmental sciences allowing scientists to generate low-cost, high-quality, and high-resolution imagery on demand that can be tailored to specific research questions. While satellite data are of a fixed resolution and temporal interval, UAS offer researchers control and flexibility to design studies and collect data at resolutions and scales that provide ecologically relevant information at finer spatial resolutions (e.g., < 30 cm) than what is currently available from satellite platforms (typically > 3m), thus helping capture objects such as individual plant canopies, micro-topography, and individual animals. Unlike satellites with fixed orbits, UAS can be deployed at more optimal temporal frequencies for ecological monitoring. We organized the special collection “Advances and Applications of Unoccupied Aerial Systems (UAS) Research in Landscape Ecology” to showcase the many ways that UAS tools and technologies are currently applied to advance landscape ecological research. When we announced the collection in 2023, only 11 papers published in the journal Landscape Ecology used UAS data, which was a notably small number compared to many other general ecology, environmental science and remote sensing journals. In an attempt to understand why UAS were not more widely used in landscape ecology and provide possible solutions, we published a review article (Villarreal et al. 2025) that identified the challenges, knowledge gaps, and obstacles for the adoption of UAS technologies in landscape ecology research. The main issues we identified include: (1) an abundance of UAS methods papers in the existing literature, with comparatively few studies demonstrating how UAS can be applied to address ecological questions; (2) a perceived scale mismatch between the geographic extent of UAS data collection (local) compared to larger study areas (landscapes) and a need to design robust scaling approaches to connect fine-scale UAS data with broader ecological patterns; and (3) a need for improved integration of UAS data with other commonly used remote sensing datasets including historical high resolution aerial imagery. Additionally, researchers new to UAS remote sensing may be discouraged or overwhelmed by the general lack of scientific consensus and standardized protocols for typical tasks such as data collection, vegetation classification, and change detection, as well as restrictive and/or confusing policy, regulatory, and legal issues surrounding UAS operations (Villarreal et al. 2025).

Landscape Ecology↗

USGS2004

Habitat disturbance and the diversity and abundance of ants (Formicidae) in the Southeastern Fall-Line Sandhills

We examined habitat disturbance, species richness, equitability, and abundance of ants in the Fall-Line Sandhills, at Fort Benning, Georgia. We collected ants with pitfall traps, sweep nets, and by searching tree trunks. Disturbed areas were used for military training; tracked and wheeled vehicles damaged vegetation and soils. Highly disturbed sites had fewer trees, diminished ground cover, warmer soils in the summer, and more compacted soils with a shallower A-horizon. We collected 48 species of ants, in 23 genera (141,468 individuals), over four years of sampling. Highly disturbed areas had fewer species, and greater numbers of ants than did moderately or lightly disturbed areas. The ant communities in disturbed areas were also less equitable, and were dominated by Dorymyrmex smithi .

Georgia↗

USGS2013

Effects of climate change and urban development on the distribution and conservation of vegetation in a Mediterranean type ecosystem

Climate and land-use changes are projected to threaten biodiversity over this century. However, few studies have considered the spatial and temporal overlap of these threats to evaluate how ongoing land-use change could affect species ranges projected to shift outside conservation areas. We evaluated climate change and urban development effects on vegetation distribution in the Southwest ecoregion, California Floristic Province, USA. We also evaluated how well a conservation network protects suitable habitat for rare plant species under these change projections and identified primary sources of uncertainty. We used consensus-based maps from three species distribution models (SDMs) to project current and future suitable habitat for 19 species representing different functional types (defined by fire-response – obligate seeders, resprouting shrubs – and life forms – herbs, subshrubs), and range sizes (large/common, small/rare). We used one spatially explicit urban growth projection; two climate models, emission scenarios, and probability thresholds applied to SDMs; and high-resolution (90 m) environmental data. We projected that suitable habitat could disappear for 4 species and decrease for 15 by 2080. Averaged centroids of suitable habitat (all species) were projected to shift tens (up to hundreds) of kilometers. Herbs showed a small-projected response to climate change, while obligate seeders could suffer the greatest losses. Several rare species could lose suitable habitat inside conservation areas while increasing area outside. We concluded that (i) climate change is more important than urban development for vegetation habitat loss in this ecoregion through 2080 due to diminishing amounts of undeveloped private land in this region; (ii) the existing conservation plan, while extensive, may be inadequate to protect plant diversity under projected patterns of climate change and urban development, (iii) regional assessments of the dynamics of the drivers of biodiversity change based on high-resolution environmental data and consensus predictive mapping, such as this study, are necessary to identify the species expected to be the most vulnerable and to meaningfully inform regional-scale conservation.

California↗

USGS2015

U.S. Geological Survey science for the Wyoming Landscape Conservation Initiative—2014 annual report

This is the seventh report produced by the U.S. Geological Survey (USGS) for the Wyoming Landscape Conservation Initiative (WLCI) to detail annual activities conducted by the USGS for addressing specific management needs identified by WLCI partners. In FY2014, there were 26 projects, including a new one that was completed, two others that were also completed, and several that entered new phases or directions. The 26 projects fall into several categories: (1) synthesizing and analyzing existing data to identify current conditions on the landscape and using the data to develop models for projecting past and future landscape conditions; (2) monitoring indicators of ecosystem conditions and the effectiveness of on-the-ground habitat projects; (3) conducting research to elucidate the mechanisms underlying wildlife and habitat responses to changing land uses; (4) managing and making accessible the large number of databases, maps, and other products being developed; and (5) coordinating efforts among WLCI partners, helping them use USGS-developed decision-support tools, and integrating WLCI outcomes with future habitat enhancement and research projects. The new (completed) project was the development and publication of a public outreach piece for visitors of Fossil Butte National Monument. The final product was a USGS Fact Sheet that capitalized on previously collected elk-monitoring data to interpret the ecology of the Monument’s elk population and the importance of the Monument’s habitats to this highly visible wildlife species. One of the completed projects entailed developing and evaluating a synthetic approach to high-resolution satellite imagery for use in effectiveness monitoring, which culminated in a journal article. The other completed project was a coalescing of two similar tasks under data and information management that pertain to Web application development and the development of outreach and graphic products into a single integrated project that focuses on developing and maintaining/upgrading Web applications and other tools for visualizing, mapping, and using geospatial data. Major accomplishments for FY2014 included several publications, including Part B of an energy resources map that (with Part A) depicts coal, wind, oil, gas, oil shale, uranium, and solar energy production in the WLCI region. Two published works associated with sage-grouse included a Wildlife Monograph on prioritizing species’ habitats across large landscapes, multiple seasons, and novel areas (using sage-grouse in Wyoming as an example), and a USGS Data Series report that includes both the data used in the habitat-prioritization models and the habitat prioritization models developed for sage-grouse. Our Science Team also published a framework for conducting large, collaborative projects that rely on geospatial data, and a paper that describes the efficacy of fusing satellite data collected at various resolutions for measuring and monitoring vegetation changes. These products are all invaluable tools for maximizing the efficiency and effectiveness of managing species of concern, conducting future landscape-scale assessments, and monitoring status and trends of landscape conditions. Other highlights of FY2014 included a renewed effort to gather and analyze wildlife and habitat status and trend data for the WLCI Interagency Monitoring Database (IAMD) to assess long-term trends and cumulative effects associated with land-use and climate changes. Water-monitoring efforts included drilling four new groundwater-monitoring wells in the Green and New Fork River basins near the proposed Normally Pressured Lance Formation energy development, and continued data collection at established water-monitoring sites. Three additional wells were sampled as part of the Wyoming Groundwater Monitoring Network, bringing the total to 19 Network wells sampled in the WLCI region since 2010. Combined, these water-monitoring efforts can help to identify potential changes in water quality or levels that may result from land-use changes. Major terrestrial monitoring accomplishments included processing satellite imagery from 1985−2010 to develop a historical perspective of long-term vegetation changes, which can serve as a basis for monitoring current and future trends in sagebrush steppe. Such data are crucial tools for agencies tasked with sage-grouse management and conservation. The USGS WLCI Science Team also continued monitoring and testing methods for evaluating WLCI habitat treatments designed to promote aspen regeneration and enhance sage-grouse habitat, and to assess how those treatments influence invasive species distributions and ungulate herbivory. Highlights included analyzing field data collected to elucidate the relationships between sage-grouse habitat use and the proximity of energy infrastructure, and using new instruments to measure productivity responses of aspen woodlands to various factors. Numerous FY2014 accomplishments specifically addressed agency needs to manage and conserve Wyoming’s wildlife species of concern. A pygmy rabbit habitat model and Wyoming distribution map were completed to identify factors associated with rabbit habitat occupancy. Previous work on sage-grouse population dynamics was expanded to better understand the factors that drive long-term viability of sage-grouse populations and to develop a tool that helps to identify key factors limiting sage-grouse persistence in Wyoming. Field work and data analyses continued for elucidating the relationships between sagebrush songbird abundance and productivity, the intensity of energy development, and community dynamics of nest predators. For the mule deer study, mixed mountain shrublands important to migrating and wintering mule deer were mapped and delivered to WLCI partners. Additionally, the relationships between energy development and crucial winter habitat for mule deer were evaluated, and a new phase of work was implemented to better understand relationships between plant phenology and mule deer migration movements. Finally, initial analyses of data collected to evaluate fish-community composition in relation to habitat quality indicate that water quality, as measured by concentrations of hydrocarbons, water temperature, and others parameters, has been diminished in subwatersheds with higher levels of energy development. Overall, the outcomes and products of these wildlife studies contribute significantly to the information and tools needed for addressing effects of land-use changes on Wyoming’s species of concern. Finally, capabilities of the WLCI Web site and the USGS ScienceBase infrastructure were maintained and upgraded to help ensure access to and efficient use of all the WLCI data, products, assessment tools, and outreach materials that have been developed. Of particular note is the completion of three Web applications developed for mapping (1) the 1900−2008 progression of oil and gas development;(2) the predicted distributions of Wyoming’s Species of Greatest Conservation Need; and (3) the locations of coal and wind energy production, sage-grouse distribution and core management areas, and alternative routes for transmission lines within the WLCI region. Collectively, these applications tools provide WLCI planners and managers with powerful tools for better understanding the distributions of wildlife species and potential alternatives for energy development.

Wyoming↗

USGS2007

The 1 km AVHRR global land data set: first stages in implementation

The global land 1 km data set project represents an international effort to acquire, archive, process, and distribute 1 km AVHRR data of the entire global land surface in order to meet the needs of the international science community. A network of 26 high resolution picture transmission (HRPT) stations, along with data recorded by the National Oceanic and Atmospheric Administration (NOAA), has been acquiring daily global land coverage since 1 April 1992. A data set of over 30000 AVHRR images has been archived and made available for distribution by the United States Geological Survey, EROS Data Center and the European Space Agency. Under the guidance of the International Geosphere Biosphere programme, processing standards for the AVHRR data have been developed for calibration, atmospheric correction, geometric registration, and the production of global 10-day maximum normalized difference vegetation index (NDVI) composites. The major uses of the composites are related to the study of surface vegetation cover. A prototype 10-day composite was produced for the period of 21–30 June 1992. Production of an 18-month time series of 10-day composites is underway.

International Journal of Remote Sensing↗

USGS2023

Insectivorous bat foraging tracks the availability of aquatic flies (Diptera)

Rivers and their adjacent riparian zones are model ecosystems for observing cross-ecosystem energy transfers. Aquatic insects emerging from streams, for example, are resource subsidies that support riparian consumers such as birds, spiders, lizards, and bats. We collaborated with recreational river runners in Grand Canyon, Arizona, USA, to record acoustic bat activity and sample riparian insects using light traps at dusk from April through October 2017–2020. River runners collected these data on 1,428 events over 611 sampling nights at 410 sites throughout a 470-km segment of the Colorado River. We documented 71 insect taxa in light traps and recorded 19 bat species with acoustic detectors. We hypothesized that bat activity along this highly regulated river segment would be influenced primarily by variation in prey availability, as compared to other habitat descriptors. We predicted that bat activity would be positively related to aquatic insect catch rates and unrelated to terrestrial insect abundance. We fit Bayesian regression models to test these hypotheses and to quantify the relationship between bat activity and a suite of environmental variables: time of year, time of day, distance from perennial tributaries, distance from rapids, channel width, geomorphic reach, tall vegetation cover, air temperature, and lunar phase. Bat activity was positively related to the abundance of aquatic flies (Diptera), which outcompeted all other prey categories and structural habitat descriptors in our models. Within our dusk sampling period, activity of small myotis (California myotis [ Myotis californicus ] and Yuma myotis [ M. yumanensis ]) was high late in the evening and canyon bats ( Parastrellus hesperus ), conversely, were more active early in the evening. Activity of canyon bats varied seasonally, with peak activity in August. Our results support the hypothesis that aquatic prey, specifically aquatic flies, are key predictors of bat activity along a large, regulated river corridor and demonstrate the power of community science as a tool for ecosystem monitoring.

Journal of Wildlife Management↗

USGS1999

Role of charred wood, heat-shock and light in germination of postfire phrygana species from the eastern Mediterranean Basin

Seeds of 22 species collected from recently burned phrygana were tested for their response to fire-type cues of charred wood and heat-shock. All Cistus species were stimulated by brief heat-shock, as shown in previous studies; however, none responded to charred wood. Only one of the 22 species was stimulated by charred wood, and only in dark-inhibited seeds, and this response did not occur in the light. The lack of charred-wood-induced germination is in contrast to the substantial proportion of species with this germination response reported for mediterranean-type vegetation in California, the Cape region of South Africa, and Western Australia. Phrygana has many species with heat-shock-stimulated germination, primarily in the Fabaceae and Cistaceae. This germination cue is widespread in these two families, thus, the presence of heat-shock-stimulated germination is a result of homologous, rather than covergent, adaptations in mediterranean-climate ecosystems. Germination response to light was not randomly distributed with respect to fire-type response. Heat-shock-stimulated species were almost uniformly light neutral, in contrast to more opportunistic colonizing species with non-refractory seeds, in which half of the species responded positively or negatively to light.

Israel Journal of Plant Sciences↗

USGS2021

Evaluation of remote mapping techniques for earthquake-triggered landslide inventories in an urban subarctic environment: A case study of the 2018 Anchorage, Alaska Earthquake

Earthquake-induced landslide inventories can be generated using field observations but doing so can be challenging if the affected landscape is large or inaccessible after an earthquake. Remote sensing data can be used to help overcome these limitations. The effectiveness of remotely sensed data to produce landslide inventories, however, is dependent on a variety of factors, such as the extent of coverage, timing, and data quality, as well as environmental factors such as atmospheric interference (e.g., clouds, water vapor) or snow and vegetation cover. With these challenges in mind, we use a combination of field observations and remote sensing data from multispectral, light detection and ranging (lidar), and synthetic aperture radar (SAR) sensors to produce a ground failure inventory for the urban areas affected by the 2018 magnitude (M w ) 7.1 Anchorage, Alaska earthquake. The earthquake occurred during late November at high latitude (∼61°N), and the lack of sunlight, persistent cloud cover, and snow cover that occurred after the earthquake made remote mapping challenging for this event. Despite these challenges, 43 landslides were manually mapped and classified using a combination of the datasets mentioned previously. Using this manually compiled inventory, we investigate the individual performance and reliability of three remote sensing techniques in this environment not typically hospitable to remotely sensed mapping. We found that differencing pre- and post-event normalized difference vegetation index maps and lidar worked best for identifying soil slumps and rapid soil flows, but not as well for small soil slides, soil block slides and rock falls. The SAR-based methods did not work well for identifying any landslide types because of high noise levels likely related to snow. Some landslides, especially those that resulted in minor surface displacement, were identifiable only from the field observations. This work highlights the importance of the rapid collection of field observations and provides guidance for future mappers on which techniques, or combination of techniques, will be most effective at remotely mapping landslides in a subarctic and urban environment.

Alaska↗