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USGS1987

Case histories of bald eagles and other raptors killed by organophosphorus insecticides topically applied to livestock

Since 1982 when secondary poisoning of a red-tailed hawk ( Buteo jamaicensis ) was documented following the recommended use of famphur applied topically to cattle, the Patuxent Wildlife Research Center has tested dead birds of prey for poisoning by famphur and other pouron organophosphorus (OP) insecticides. Brain cholinesterase (ChE) activity was first determined, then if ChE was depressed ≥50%, stomach and/or crop contents were evaluated for anti-ChE compounds. This report presents the circumstances surrounding the OP-caused deaths of eight bald eagles ( Haliaeetus leucocephalus ), two red-tailed hawks, and one great horned owl ( Bubo virginianus ) between March 1984 and March 1985. OP poisoning of raptors by pour-on insecticides in the United States is widespread, but its magnitude is unknown.

Journal of Wildlife Diseases↗

USGS2025

Evaluating the applicability of the generalized power-law rating curve model: With applications to paired discharge-stage data from Iceland, Sweden, and the United States

Hydrologic research and operations make extensive use of streamflow time series. In most applications, these time series are estimated from rating curves, which relate flow to some easy-to-measure surrogate, typically stage. The conventional stage-discharge rating takes the form of a segmented power law, with one segment for each hydrologic control at the stream gauge. However, these ratings are notoriously difficult to estimate with numerical methods, so that most are still developed manually. A few automated algorithms have emerged, but their use is sporadic, and their relative merits have not been rigorously assessed. One recently developed approach, the generalized power-law, avoids the segmenting problem by representing the power-law exponent as a Gaussian process. On the one hand, this representation is more flexible and easier to fit, but its flexibility might allow unrealistic solutions, so it needs to be tested under a range of conditions to assess its operational viability. This study evaluates the generalized power-law rating curve model by applying it to observations from 180 streams in Iceland, Sweden, and the United States. Overall, the model proved flexible and computationally robust, generating convincing rating curves across a range of geographic settings and was comparable to curves generated by a segmented rating model. Lastly, we propose a model-selection algorithm based on information theory to help identify the best rating curve model for a particular stream gauge.

Journal of Hydrology↗

USGS2023

Crop water use dynamics over arid and semi-arid croplands in the lower Colorado River Basin

Numerous studies have evaluated the application of Remote Sensing (RS) techniques for mapping actual evapotranspiration (ETa) using Vegetation-Index-based (VI-based) and surface energy balance methods (SEB). SEB models computationally require a large effort for application. VI-based methods are fast and easy to apply and could therefore potentially be applied at high resolution; however, the accuracy of VI-based methods in comparison to SEB-based models remains unclear. We tested the ETa computed with the modified 2-band Enhanced Vegetation Index (METEVI2) implemented in the Google Earth Engine – for mapping croplands’ water use dynamics in the Lower Colorado River Basin. We compared METEVI2 with the well-established RS-based products of OpenET (Ensemble, eeMETRIC, SSEBop, SIMS, PT_JPL, DisALEXI and geeSEBAL). METEVI2 was then evaluated with measured ETa from four wheat fields (2017–2018). Results indicated that the monthly ETa variations for METEVI2 and OpenET models were comparable, though of varying magnitudes. On average, METEVI2 had the lowest difference rate from the average observed ETa with 17 mm underestimation, while SIMS had the highest difference rate (82 mm). Findings show that METEVI2 is a cost-effective ETa mapping tool in drylands to track crop water use. Future studies should test METEVI2’s applicability to croplands in more humid regions.

Lower Colorado River basin↗

USGS2010

Effects of water hardness on size and hatching success of silver carp eggs

Eggs of silver carp Hypophthalmichthys molitrix absorb water after release from the female, causing them to become turgid and to increase substantially in size. The volume of water that diffuses within an egg is most likely determined by (1) the difference in ionic concentration between the egg and the water that surrounds it and (2) the elasticity of the egg membrane. Prior observations suggest that silver carp eggs may swell and burst in soft waters. If water hardness affects silver carp reproductive success in nonnative ecosystems, this abiotic factor could limit silver carp distribution or abundance. In this study, we tested the effect of water hardness on silver carp egg enlargement and hatching success. Groups of newly fertilized silver carp eggs were placed in water at one of five nominal water hardness levels (50, 100, 150, 200, or 250 mg/L as CaCO 3 ) for 1 h to harden (absorb water after fertilization). Egg groups were then placed in separate incubation vessels housed in two recirculation systems that were supplied with either soft (50 mg/L as CaCO 3 ) or hard (250 mg/L as CaCO 3 ) water to evaluate hatching success. Tests were terminated within 24 h after viable eggs had hatched. Eggs that were initially placed in 50-mg/L water to harden were larger (i.e., swelled more) and had a greater probability of hatch than eggs hardened in other water hardness levels. Unlike the effect of water hardness during egg hardening, the water hardness during incubation appeared to have no effect on egg hatching success. Our research suggests that water hardness may not be a limiting factor in the reproduction, recruitment, and range expansion of silver carp in North America.

North American Journal of Fisheries Management↗

USGS2022

Seed germination responses to salinity for three rare wetland plants of spring-fed arid systems

Spring-fed wetlands within arid systems host unique species of plants, many of which are threatened due to the vulnerability of these ecosystems. Increased salinity and drier hydrologic regimes due to anthropogenic activities threaten these systems. Furthermore, limited knowledge regarding key life history traits of species jeopardize the restoration and management of their rare plants. Here, we evaluated key aspects of the seed ecophysiology of three rare plants of the Southwestern United States: Helianthus paradoxus (Pecos sunflower), Cirsium wrightii (Wright's marsh thistle), and Agalinis calycina (Leoncita false-foxglove). We examined seed dormancy break under controlled conditions and evaluated the effects of field-derived salinity gradients on seed dormancy break and germination. Seeds of C. wrightii were nondormant at dispersal, germination was high (>70%) under all treatments and was not affected by the tested salinities. Germination in H. paradoxus was high (>70%) following cold stratification, but increasing salinities reduced germination. A. calycina seeds required cold stratification, but germination was low (<50%) under all tested treatments and increasing salinities during incubation had the greatest negative effects in this species. Our findings contribute to the restoration of rare wetland plants within spring-fed arid marshes susceptible to groundwater declines and human-induced salinization.

New Mexico↗

USGS1982

A field evaluation of frogs as a potential source of secondary organophosphorus insecticide poisoning

Because amphibians are relatively resistant to organophosphorus insecticides and can bioaccumulate residues to high levels, they may be a source of secondary poisoning for vertebrates that feed on them. This hypothesis was tested by determining residues in breeding upland chorus frogs Pseudacris triseriata, that were collected from ponds treated with the organophosphorus insecticide fenthion. Frogs were collected up to 3-days posttreatment in four areas that were treated with fenthion formulated in either diesel oil or water. No residues of fenthion were detected above the 0.01 ppm level of analytical sensitivity. These results indicate that the frogs were not a likely source of secondary poisoning for predatory vertebrates.

Canadian Journal of Zoology↗

USGS2025

Revised length categories and standard weight equation for Northern Pikeminnow

Objective Length and weight indices (e.g., proportional size distribution, relative weight) provide standardized benchmarks that are useful for comparing groups of fish, identifying ecological interactions, and evaluating the effect of management actions. However, the current length categories and standard weight ( W s ) equation for Northern Pikeminnow Ptychocheilus oregonensis , a species of important management focus in the Pacific Northwest, were developed using limited data, unclear methods, and no validation. As such, we sought to revise the length categories and W s equation for Northern Pikeminnow. Methods We used the all-tackle world record to develop length categories for Northern Pikeminnow. We compiled data from 100,663 Northern Pikeminnow from 114 populations in Idaho, Montana, Oregon, Washington, and British Columbia to develop a revised W s equation. Most fish were measured in fork length (FL), so we converted total lengths (TLs) to FLs using the equation TL = −2.301 + 0.916(FL); r 2 = 0.998. We used the regression line percentile, linear empirical percentile (EmP), and quadratic EmP methods to develop 50th percentile and 75th percentile W s equations. We then assessed length-related biases in our W s equations and the previously published equation. Results We propose minimum FLs of 17 cm (7 inches; stock), 26 cm (10 inches; quality), 35 cm (14 inches; preferred), 41 cm (16 inches; memorable), and 51 cm (20 inches; trophy) for proportional size distribution calculations. The previously published W s equation exhibited substantial length-related biases according to the Willis and weighted empirical quartile method tests. The EmP 50th-percentile W s equation was the only equation that we evaluated that did not exhibit length-related bias. The EmP 50th-percentile W s equation was the best performing equation (i.e., no length-related bias detected). The equation is log 10 ( W s ) = −5.258 + 3.135(FL), where W s is in grams and FL is in millimeters. The equation is valid for Northern Pikeminnow 90–580 mm FL. Conclusion The length categories, length conversion, and W s equation presented here will aid fisheries professionals in the study and management of Northern Pikeminnow populations.

British Columbia, Idaho, Montana, Oregon Washingto↗

USGS2011

Characterization of the Sonoran desert as a radiometric calibration target for Earth observing sensors

To provide highly accurate quantitative measurements of the Earth's surface, a comprehensive calibration and validation of the satellite sensors is required. The NASA Moderate Resolution Imaging Spectroradiometer (MODIS) Characterization Support Team, in collaboration with United States Geological Survey, Earth Resources Observation and Science Center, has previously demonstrated the use of African desert sites to monitor the long-term calibration stability of Terra MODIS and Landsat 7 (L7) Enhanced Thematic Mapper plus (ETM+). The current study focuses on evaluating the suitability of the Sonoran Desert test site for post-launch long-term radiometric calibration as well as cross-calibration purposes. Due to the lack of historical and on-going in situ ground measurements, the Sonoran Desert is not usually used for absolute calibration. An in-depth evaluation (spatial, temporal, and spectral stability) of this site using well calibrated L7 ETM+ measurements and local climatology data has been performed. The Sonoran Desert site produced spatial variability of about 3 to 5% in the reflective solar regions, and the temporal variations of the site after correction for view-geometry impacts were generally around 3%. The results demonstrate that, barring the impacts due to occasional precipitation, the Sonoran Desert site can be effectively used for cross-calibration and long-term stability monitoring of satellite sensors, thus, providing a good test site in the western hemisphere.

Sonoran Desert↗

USGS1985

Digital to Analog Conversion and Visual Evaluation of Thematic Mapper Data

As a part of the National Aeronautics and Space Administration Landsat D Image Data Quality Analysis Program, the Earth Resources Observation Systems Data Center (EDC) developed procedures to optimize the visual information content of Thematic Mapper data and evaluate the resulting photographic products by visual interpretation. A digital-to-analog transfer function was developed which would properly place the digital values on the most useable portion of a film response curve. Individual black-and-white transparencies generated using the resulting look-up tables were utilized in the production of color-composite images with varying band combinations. Four experienced photointerpreters ranked 2-cm-diameter (0. 75 inch) chips of selected image features of each band combination for ease of interpretability. A nonparametric rank-order test determined the significance of interpreter preference for the band combinations.

Journal of Imaging Technology↗

USGS1985

Digital to analog conversion and visual evaluation of Thematic Mapper data

Journal of Imaging Technology↗

USGS2019

Standardizing a non-lethal method for characterizing the reproductive status and larval development of freshwater mussels (Bivalvia: Unionoida)

Actively monitoring the timing, development, and reproductive patterns of endangered species is critical when managing for population recovery. Freshwater mussels are among the most imperiled organisms in the world, but information about early larval (glochidial) development and brooding periods is still lacking for many species. Previous studies have focused on the complex life history stage when female mussels are ready to parasitize host fish, but few studies have focused on the brooding period and timing of larval development. The protocol described here allows researchers to non-lethally evaluate the state of gravidity for female mussels. The results of this study show that this method does not affect a female mussel’s ability to stay gravid or become gravid again after sampling has been performed. The advantage of this method may permit its use on federally threatened or endangered species or other populations of high conservation concern. This protocol can be adapted for use on both preserved or live individuals and was tested on a variety of mussel species. The database provided is a repository for a breadth of information on timing of reproductive habits and will facilitate future freshwater mussel research, conservation, and recovery efforts.

Journal of Visualized Experiments↗

USGS2020

Advancements towards selective barrier passage by automatic species identification: Applications of deep convolutional neural networks on images of dewatered fish

Invasive species negatively affect enterprises such as fisheries, agriculture, and international trade. In the Laurentian Great Lakes Basin, threats include invasive sea lamprey ( Petromyzon marinus ) and the four major Chinese carps. Barriers have proven to be an effective mechanism for managing invasive species but are detrimental in that they also limit the migration of desirable, native species. Fish passage technologies that selectively pass desirable species while blocking undesirable species are needed. Key to an automated selective barrier passage system is a high precision fish classifier to assign fish to be passed or blocked. Presented is an evaluation of two classifiers developed using images of partially dewatered fish captured from a commercial, high-speed camera array. For a lamprey vs. non-lamprey classification task, an ensemble prediction approach achieved near perfect accuracy on both a validation and test dataset. For a species classification task for 13 species found in the Great Lakes region, an ensemble prediction approach achieved accuracies of 96% and 97% on a validation and test dataset, respectively. Both prediction approaches were based on deep convolutional neural networks constructed using transfer learning and image augmentation. The study provides an important proof-of-concept for the viability in fully automated, selective fish passage systems.

Illinois, Michigan,Ohio↗

USGS2013

Bench-top validation testing of selected immunological and molecular Renibacterium salmoninarum diagnostic assays by comparison with quantitative bacteriological culture

No gold standard assay exhibiting error-free classification of results has been identified for detection of Renibacterium salmoninarum , the causative agent of salmonid bacterial kidney disease. Validation of diagnostic assays for R. salmoninarum has been hindered by its unique characteristics and biology, and difficulties in locating suitable populations of reference test animals. Infection status of fish in test populations is often unknown, and it is commonly assumed that the assay yielding the most positive results has the highest diagnostic accuracy, without consideration of misclassification of results. In this research, quantification of R. salmoninarum in samples by bacteriological culture provided a standardized measure of viable bacteria to evaluate analytical performance characteristics (sensitivity, specificity and repeatability) of non-culture assays in three matrices (phosphate-buffered saline, ovarian fluid and kidney tissue). Non-culture assays included polyclonal enzyme-linked immunosorbent assay (ELISA), direct smear fluorescent antibody technique (FAT), membrane-filtration FAT, nested polymerase chain reaction (nested PCR) and three real-time quantitative PCR assays. Injection challenge of specific pathogen-free Chinook salmon, Oncorhynchus tshawytscha (Walbaum), with R. salmoninarum was used to estimate diagnostic sensitivity and specificity. Results did not identify a single assay demonstrating the highest analytical and diagnostic performance characteristics, but revealed strengths and weaknesses of each test.

Journal of Fish Diseases↗

USGS1987

Microbial infections in a declining wild turkey population in Texas

A survey was conducted at 5 locations in Texas for avian pathogens that might adversely affect wild turkey ( Meleagris gallopavo ) productivity and survival. At 1 site, the Rob and Bessie Welder Wildlife Refuge (WWR), turkeys have declined precipitously in recent years. During the winters of 1983-85, 442 wild turkeys were caught with cannon and drop nets, 161 of these on WWR. Blood samples were drawn for serologic evaluation, and cloacal and tracheal swabs were collected for isolation attempts. Salmonella spp. bacteria, Newcastle disease virus (NDV), and avian influenza virus (AIV) were not detected in any samples tested. Serologic tests for antibodies to NDV and AIV also were negative. Many mycoplasma isolates were recovered from turkeys from every location. Characterization of these isolates indicated that several species were present. None were species typically associated with mycoplasmosis in domestic turkeys, such as Mycoplasma gallisepticum (MG), M. meleagridis (MM), or M. synoviae (MS), although antibodies to these pathogens were detected in turkeys at every location sampled. There was no evidence to link any of these disease causing agents to the decline observed in the population of wild turkeys on the WWR.

Texas↗

USGS1969

Aging small Canada geese by neck plumage

The neck plumage method, a new technique for separating immature from adult Canada geese ( Branta canadensis ) in the hand, was evaluated by comparison with the notched tail feather and cloacal examination methods. Two (1.4 percent) of 141 geese examined were misaged, resulting in a 6 percent error in the immature-adult ratio obtained by the neck plumage method. The neck plumage method is a rapid aging method and reasonable accuracy (94 percent) can be obtained. It can also be used to differentiate immatures from adults on the ground at distances up to 175 yards, but was almost impossible to use when geese were in flight. As yet, the neck plumage method has only been tested on the subspecies ( B. c. hutchinsii-parvipes complex) in the Tall-Grass Prairie population of small Canada geese.

South Dakota↗

USGS2001

Evaluation of USEPA method 1622 for detection of Cryptosporidium oocysts in stream waters

To improve surveillance for Cryptosporidium oocysts in water, the US Environmental Protection Agency developed method 1622, which consists of filtration, concentration, immunomagnetic separation, fluorescent antibody and 4, 6-diamidino-2-phenylindole (DAPI) counter-staining, and microscopic evaluation. Two filters were compared for analysis of 11 stream water samples collected throughout the United States. Replicate 10-L stream water samples (unspiked and spiked with 100–250 oocysts) were tested to evaluate matrix effects. Oocyst recoveries from the stream water samples averaged 22% (standard deviation [SD] = ±17%) with a membrane disk and 12% (SD = ±6%) with a capsule filter. Oocyst recoveries from reagent water precision and recovery samples averaged 39% (SD = ±13%) with a membrane disk and 47% (SD = ±19%) with a capsule filter. These results demonstrate that Cryptosporidium oocysts can be recovered from stream waters using method 1622, but recoveries are lower than those from reagent-grade water. This research also evaluated concentrations of indicator bacteria in the stream water samples. Because few samples were oocyst-positive, relationships between detections of oocysts and concentrations of indicator organisms could not be determined.

Journal - American Water Works Association↗

USGS1998

Avoidance behavior of ruffe exposed to selected formulations of piscicides

Ruffe were introduced into Duluth Harbor, Minnesota in the early 1980s, probably by release of ballast water from sea-going freighters. Since then, it has become the most abundant species in the fish community. The sensitivity of ruffe to a number of piscicides has been demonstrated, however, the feasibility of using piscicides to control populations depends on whether ruffe can detect piscicides and move to untreated water. We used a two-choice preference testing system to evaluate avoidance or attraction reactions of ruffe during exposures to the lampricides TFM and bayluscide and the general fish toxicants rotenone and antimycin. We used a second testing system to evaluate the potential for benthic ruffe to move vertically in the water column to avoid piscicides dissolving from experimental bottom-release formulations of bayluscide and antimycin. Near-lethal concentrations of TFM and rotenone tended to repel ruffe. Antimycin and bayluscide did not seem to repel ruffe in the avoidance chamber, but bottom-release formulations (antimycin granules—0.25% a.i. and bayluscide granules—3.2% a.i.) did cause increased swimming and surfacing activity among ruffe in column tests. We conclude that TFM and rotenone could be used to treat entire bodies of water, while bottom-release formulations of antimycin and bayluscide may have more application for treating localized concentrations of ruffe.

Journal of Great Lakes Research↗

USGS1992

Semiempirical model of soil water hysteresis

In order to represent hysteretic soil water retention curves accurately using as few measurements as possible, a new semiempirical model has been developed. It has two postulates related to physical characteristics of the medium, and two parameters, each with a definite physical interpretation, whose values are determined empirically for a given porous medium. One parameter represents the fraction of the pore space that is not subject to Haines jump hysteresis. Its associated postulate is that a single value of this parameter characterizes a given medium, or, equivalently, that the medium is self-similar with respect to the division between hysteretic and nonhysteretic pore space. The second parameter is the effective body-to-neck size ratio of the medium's largest pore. The second postulate specifies a particular relation between the size distributions of pore bodies and of pore necks. Tests of the model show that it provides high-quality optimized fits to measured water content vs. matric pressure wetting curves for a wide variety of media. The parameter values obtained through optimization correlate plausibly with such media properties as uniformity of particles, complexity of structure, and degree of compaction. A practical use of this model is to provide a complete simulated main wetting curve for a medium where only a main drying curve and two points on the wetting curve have been measured. With additional development, it may be possible to do without the two measured wetting points if parameters can be evaluated from other measurements or known properties of the medium.

Soil Science Society of America Journal↗