SEARCH · Search USGS

Results for “Journal of Freshwater Ecology”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

SourceResearch connectionFrom yearThrough year

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

1,663 records · Page 5Linked to original sources

USGS2026

Statewide surficial geologic map of Nebraska underscores Quaternary landscape evolution from the High Plains to the Central Lowland

Surficial geologic mapping in Nebraska has been conducted primarily at the 1:24,000 scale since the mid-1990s, although there have also been limited efforts to map generalized Quaternary and surficial geology within the state and the region. We compiled and evaluated disparate maps (1:24,000–1:1,000,000) and datasets—including geologic, soil and soil parent material, and geomorphic maps as well as LiDAR derivatives—to produce a single 1:500,000 scale surficial geologic map of Nebraska that is the first of its kind. This new map provides a coarse-scale surficial geologic map that will be incorporated into a nationwide U.S. Geological Survey Quaternary geologic map. It also reflects the variation and uniqueness of physical landscapes in the state, where the Great Plains and Central Lowland physiographic provinces meet, further developing a richer interdisciplinary understanding of regional geomorphology in the heart of North America.

Nebraska↗

USGS2024

Evaluating the impact of uncertainty in ground motion forecasts for post-earthquake impact modeling applications

The US Geological Survey’s (USGS) ShakeMap system provides a rapid characterization of strong ground shaking in areas directly affected by an earthquake. This study focuses on studying the aggregate effects of macroseismic shaking estimates from ShakeMap, expressed in terms of modified Mercalli intensity (MMI), when accounting for the uncertainty in forecasted ground motions. We use a Monte Carlo approach to generate numerous spatially correlated realizations of ground motions by utilizing a combination of circulant embedding and kriging techniques for efficiently handling the correlations. We then assessed the aggregate effects of shaking by looking at bin counts across these realizations. We demonstrate that the aggregate shaking regarding the mean macroseismic intensity estimates (from the ShakeMap output) is a biased representation of the aggregate shaking when shaking uncertainty is included. Incorporating shaking uncertainty can help to improve various downstream earthquake impact applications, such as the USGS Prompt Assessment of Global Earthquakes for Response (PAGER) overall earthquake fatality distribution or estimates of shaking-induced ground failure impacts from consequential earthquakes.

Earthquake Spectra Journal↗

USGS2025

Prospectivity modeling of the NASA VIPER landing site at Mons Mouton near the Lunar South Pole

We use a high-resolution digital elevation model and a numerical thermal model to produce a variety of inputs for a water-ice prospectivity model for the Volatiles Investigating Polar Exploration Rover (VIPER) landing site. These input data are maps of topography, surface slope, surface aspect, surface curvature, maximum temperature, depth to ice stability, permanently shadowed regions (PSRs), distance to PSRs, and PSR density. This model predicts where water ice is most likely within the top meter of regolith, assuming plausible relationships between ice concentration and the various inputs. The model is designed to be adjusted in near-real time as data are collected during the VIPER mission. As such, it is a tool for both analyzing data from the mission as well as planning operations. Since the current model, at this point, relies only on orbital remote sensing, the final version will also be a tool to extrapolate the VIPER mission results across the lunar poles.

Planetary Science Journal↗

USGS2026

Synthesizing a twelve-year sediment trap time series of planktic foraminiferal flux in the Gulf of America (Mexico)

Sediment trap time series provide powerful frameworks for testing hypotheses about planktic foraminiferal assemblage composition, seasonality, and geochemical responses to environmental variability, all of which are central to improving paleoceanographic reconstructions. We present high resolution foraminiferal assemblage data from a long-running sediment trap (2008–2020) in the northern Gulf of America (Mexico). This study summarizes the species composition, seasonality, and size distribution of the fifteen most abundant species of planktic foraminifera, which account for 98% of total flux. Foraminiferal flux peaks in winter and reaches a minimum in summer, following the seasonal pattern of primary production in the northern Gulf. Winter assemblages are dominated by non-spinose taxa, whereas spinose taxa prevail during summer. Across nearly all species, average monthly test size covaries with temperature, independent of seasonal flux trends. Notably, Trilobatus sacculifer and Neogloboquadrina dutertrei show a significant decline in relative abundance and flux during 2017–2020, nearly disappearing from the assemblage.

Journal of Foraminiferal Research↗

USGS2025

Avian navigation: Comparing the olfactory navigational “map” and the infrasound direction-finding hypotheses to aeronautics

Animal navigation has long been a fascinating but bewildering subject. Humans and animals might well share similar navigational strategies because they developed within the same physical environments. A “map-and-compass” model has been proposed to explain the two-step avian navigational process, but the “map” step has remained elusive. Although scalar values from bicoordinate geomagnetic or atmospheric olfactory gradients have been considered foundational to the avian map, neither has proved convincing engendering decades of controversy. The olfactory map, and an alternative infrasound direction-finding (IDF) hypothesis, are discussed in this review. The olfactory map hypothesis currently requires extensive stable gradients of trace-odor ratios, but such gradients are highly unlikely within a turbulent and rapidly mixed lower atmosphere. The IDF hypothesis, on the other hand, postulates a two-step navigational model analogous to the maritime and aeronautical radio direction-finding technique. This review was also written to encourage further investigation, and direct testing, of the acoustic navigational process. The IDF hypothesis, at present, appears the better explanation of observed avian navigational behavior and accuracy within the atmosphere’s physical environment.

Journal of Comparative Physiology A↗

USGS1997

Application of acoustical methods for estimating water flow and constituent loads in Perdido Bay, Florida

Water flow and quality data were collected from December 1994 to September 1995 to evaluate variations in discharge, water quality, and chemical fluxes (loads) through Perdido Bay, Florida. Data were collected at a cross section parallel to the U.S. Highway 98 bridge. Discharges measured with an acoustic Doppler current profiler (ADCP) and computed from stage-area and velocity ratings varied roughly between + or - 10,000 cubic feet per second during a typical tidal cycle. Large reversals in flow direction occurred rapidly (less than 1 hour), and complete reversals (resulting in near peak net-upstream or downstream discharges) occurred within a few hours of slack water. Observations of simultaneous upstream and downstream flow (bidirectional flow) were quite common in the ADCP measurements, with opposing directions of flow occurring predominantly in vertical layers. Continuous (every 15 minutes) discharge data were computed for the period from August 18, 1995, to September 28, 1995, and filtered daily mean discharge values were computed for the period from August 19 to September 26, 1995. Data were not computed prior to August 18, 1995, either because of missing data or because the velocity rating was poorly defined (because of insufficient data) for the period prior to landfall of hurricane Erin (August 3, 1995). The results of the study indicate that acoustical techniques can yield useful estimates of continuous (instantaneous) discharge in Perdido Bay. Useful estimates of average daily net flow rates can also be obtained, but the accuracy of these estimates will be limited by small rating shifts that introduce bias into the instantaneous values that are used to compute the net flows. Instantaneous loads of total nitrogen ranged from -180 to 220 grams per second for the samples collected during the study, and instantaneous loads of total phosphorous ranged from -10 to 11 grams per second (negative loads indicate net upstream transport). The chloride concentrations from the water samples collected from Perdido Bay indicated a significant amount of mixing of saltwater and freshwater. Mixing effects could greatly reduce the accuracy of estimates of net loads of nutrients or other substances. The study results indicate that acoustical techniques can yield acceptable estimates of instantaneous loads in Perdido Bay. However, estimates of net loads should be interpreted with great caution and may have unacceptably large errors, especially when saltwater and freshwater concentrations differ greatly.

Florida↗

USGS2024

Twentieth century extreme precipitation detected in a high-resolution, coastal lake-sediment record from California

California faces increasing economic and societal risks from extreme precipitation and flooding associated with atmospheric rivers (ARs) under projected twenty-first century climate warming. Lake sediments can retain signals of past extreme precipitation events, allowing reconstructions beyond the period of instrumental records. Here, we calibrate AR-related extreme precipitation from the last century to proxy data from lake sediments collected in the latitudinal zone of the highest frequency landfall for modern ARs in California. Excursions in erosional proxy data (Ti/Al) are positively and significantly correlated (r median = 0.45, p median = 0.04) with modern records of integrated vapor transport (IVT, kg m −1 s −1 ), a key metric of AR intensity, using correlations that incorporate age-model uncertainty. Despite the land-use change near the study site, the data suggest intense and long-lasting AR storms are identifiable in this sedimentary record. These results allow conservative inferences concerning past extreme hydrology at this site.

California↗

USGS2025

National population exposure and evacuation potential in the United States to earthquake-generated tsunami threats

Previous efforts to characterize tsunami threats to people have focused primarily on individual scenarios in specific areas but have not recognized multiple scenarios across an entire country. This study addresses this gap by quantifying population exposure and evacuation potential in the United States to 102 earthquake-related, tsunami-hazard zones, including 92 local scenarios, 8 distant scenarios, and 2 probabilistic products. Geospatial path-distance modeling quantified evacuation potential and the influence of departure delays. We focused on residents to support other national, multi-hazard risk analyses. Millions of residents are in distant-tsunami zones, and hundreds of thousands of residents are in local-tsunami zones. In 41 scenarios, there is at least one resident that may have insufficient time to evacuate before wave arrival. Tens of thousands of residents may have insufficient time to evacuate from local tsunamis that impact the U.S. Pacific Northwest or Puerto Rican coastlines. The largest improvements in evacuation potential may come from reducing departure delays in some areas but may involve vertical-evacuation structures or changing land use in other areas.

International Journal of Disaster Risk Reduction↗

USGS2024

Self-guided decision support groundwater modelling with Python

The GMDSI tutorial notebooks repository provides learners with a comprehensive set of tutorials for self-guided training on decision-support groundwater modelling using Python-based tools. Although targeted at groundwater modelling, they are based around model-agnostic tools and readily transferable to other environmental modelling workflows. The tutorials are divided into three parts. The first covers fundamental theoretical concepts. These are intended as background reading for reference on an as-needed basis. Tutorials in the second part introduce learners to some of the core concepts parameter estimation in a groundwater modelling context, as well as providing a gentle introduction to the PEST, PEST++ and pyEMU software. Lastly, the third part demonstrates how to implement highly-parameterized applied decision-support modelling workflows. The tutorials aim to provide examples of both “how to use” the software as well as “how to think” about using the software. A key advantage to using notebooks in this context is that the workflows described run the same code as practitioners would run on a large-scale real- world application. Using a small synthetic model facilitates rapid progression through the workflow.

Journal of Open Source Education↗

USGS2025

Using probability difference to compare streamflow information of alternatives for efficient operation of monitoring networks

Efficient operation of streamflow monitoring networks requires investments in technology and labor that provide the greatest benefits from available resources. Economic analyses comparing the costs and benefits from different types of alternatives for monitoring have not been practical to implement. Streamflow information provides a generic measure of benefits that can be incorporated into operational decisions as an objective for monitoring networks. A methodology for comparing how accuracy, monitoring period, and monitoring instead of modeling affects streamflow information is developed from information-theoretic approaches for network design but contributes three novel features: (1) a probability-difference model for conditional probability of monotonically paired variables, (2) explicit discounting of unverified information that may exceed the accuracy of streamflow records, and (3) run analysis to account for non-stationarity in streamflow probabilities. Application of the methodology to the U.S. Geological Survey streamflow monitoring network indicates the value of monitoring period to reduce the uncertainty of streamflow probabilities and, thus, increase streamflow information. The methodology has important limitations, particularly for sites with non-perennial streamflow, but demonstrates that probability difference could be used to evaluate operational alternatives to increase the efficiency of monitoring networks.

PLOS Water↗

USGS2025

Divide and conquer: Separating the two probabilities in seismic phase picking

There are two fundamental probabilities in the seismic phase picking process – the probability of the existence of a seismic phase (detection probability) and the probability of correctly identifying the phase arrival time (timing probability). The nearly ubiquitous approach in developing deep learning phase picking models is to use a kernel, such as a truncated Gaussian, to mask the labeled phase arrival time, and train a segmentation model. Once a model is trained, the times of the peaks in the output are taken as phase arrival times (picks) and the height of the peaks are taken as “probability” of the picks. Here, we show that this “probability” represents neither the detection nor the timing probabilty because this approach forces the output to follow the shape of the kernel. We introduce an approach using two models to estimate these two distinct probabilities. We use a binary classifier with a calibrated confidence to address the detection probability and a multi-class classifier to obtain a probability mass function to address the timing probability. This new approach makes the deep learning-based phase picking process more interpretable and gives us options to logically control seismic monitoring workflows.

Geophysical Journal International↗

USGS2024

Mitigating climate change by abating coal mine methane: A critical review of status and opportunities

Methane has a short atmospheric lifetime compared to carbon dioxide (CO 2 ), ∼decade versus ∼centuries, but it has a much higher global warming potential (GWP), highlighting how reducing methane emissions can slow the rate of climate change. When considering the contribution of greenhouse gas (GHG) emissions to current global warming (2010–2019) relative to the industrial revolution (1850–1900) levels, methane contributes 0.5 °C or ∼ a third of the total. The most recent post-2023 global estimates of methane emissions by bottom-up (BU) and top-down (TD) approaches for the coal mining sector are in the range of ∼41 ± 3 Tg yr −1 and 33 ± 5 Tg yr −1 , respectively. This divergence, notwithstanding overlapping confidence intervals, is a result of differences between applied TD global inversion models and BU emission inventories. Further research can help to better refine emissions from the various contributing coal mine methane (CMM) emissions sources. The coal mining sector accounts for over 10 % of global anthropogenic methane emissions. The contribution of CMM emissions to the global budget have increased since 2000, although upward and downward regional trends have been observed.

International Journal of Coal Geology↗

USGS2025

Simulation of the impacts of projected climate change on groundwater resources in the urban, semiarid Yucaipa Valley watershed, southern California using an integrated hydrologic model

Managing water resources in semiarid watersheds is challenging due to limited supply and uncertain future climate conditions. This paper examines the impact of future climate changes on an urban watershed in southern California using an integrated hydrologic model. GSFLOW modeling software is used to simulate the nonlinear relationships between climate trends and precipitation partitioning into ET, runoff, and subsurface storage. Four global circulation models (GCMs), each with two greenhouse-gas scenarios, RCP45 and RCP85 are used to project future climate conditions. GCMs include the CanESM2, CNRM-CM5, HadGEM2-ES, and MIROC5 models. The model's simulated hydrologic conditions are compared with historical data to assess changes in water budgets and groundwater supply. Results indicate decreased groundwater storage in most scenarios due to increased natural evapotranspiration, vegetation consumptive use, and streamflow out of the watershed. Only scenarios with substantially increased future precipitation show increased groundwater storage. The study also highlights increased future aridity despite the rise in precipitation and large precipitation events forecast by GCMs, which increase the risk of urban floods and decrease stream leakage and water available to vegetation.

California↗

USGS2025

Total uncertainty quantification in inverse solutions with deep learning surrogate models

We propose an approximate Bayesian method for quantifying the total uncertainty in inverse partial differential equation (PDE) solutions obtained with machine learning surrogate models, including operator learning models. The proposed method accounts for uncertainty in the observations, PDE, and surrogate models. First, we use the surrogate model to formulate a minimization problem in the reduced space for the maximum a posteriori (MAP) inverse solution. Then, we randomize the MAP objective function and obtain samples of the posterior distribution by minimizing different realizations of the objective function. We test the proposed framework by comparing it with the iterative ensemble smoother and deep ensembling methods for a nonlinear diffusion equation with an unknown space-dependent diffusion coefficient. Among other applications, this equation describes the flow of groundwater in an unconfined aquifer. Depending on the training dataset and ensemble sizes, the proposed method provides similar or more descriptive posteriors of the parameters and states than the iterative ensemble smoother method. Deep ensembling underestimates uncertainty and provides less-informative posteriors than the other two methods. Our results show that, despite inherent uncertainty, surrogate models can be used for parameter and state estimation as an alternative to the inverse methods relying on (more accurate) numerical PDE solvers.

Journal of Computational Physics↗

USGS2025

Exploring the science and data foundation for Federal public lands decisions

Public lands provide diverse resources, values, and services worldwide. Laws and policies typically require consideration of science in public lands decisions, and resource managers are committed to science-informed decision-making. However, it can be challenging for managers to use, and document the use of, science and data in their decisions. To better understand science and data use in Federal public lands decisions in the United States, we assessed the number, type, and age of documents cited in 70 Environmental Assessments (EAs) completed by the Bureau of Land Management (BLM) in Colorado from 2015–2019. We focused on the BLM, as they manage the largest area of public lands in the United States. We selected Colorado as our study area, as actions proposed on BLM lands in Colorado are representative of those across the nation. Fifty percent of citations were categorized as science and 23% as data. EAs contained an average of 17 citations (range 0–111), with documents analyzing effects of oil and gas development and recreation actions including the highest and lowest mean number of citations (41 and 6, respectively). Of individual resource analysis sections within EAs, 24% contained ≥1 science citation and 21% contained ≥1 data citation. Journal articles were the most cited type of document (26% of citations) followed by non-BLM inventories (13%). Forty-seven percent of citations were relatively recent (2010 or later); the oldest citation was from 1927. Commonly analyzed resources with the highest mean number of citations were socioeconomics, mineral resources, and noise. Fourteen of 33 commonly analyzed resources included <1 citation on average. Actions and resources with no or few citations represent opportunities for strengthening the transparent use of science and data in public lands decision-making.

Colorado↗

USGS2026

Detecting snow avalanche activity using infrasound: Hooker Valley, New Zealand

Snow avalanches pose considerable hazards to people and infrastructure in alpine environments. Traditional avalanche monitoring relies on meteorological data and visual observations, which can be limited in scope and timeliness. Infrasound offers a promising complementary monitoring tool by detecting the low-frequency sound waves generated by avalanches. Here, we present infrasound and camera observations during a 50-day field campaign in the Hooker Valley of Aoraki/Mount Cook National Park, New Zealand. Our study detected seven avalanches with the cameras, whereas the infrasound system identified only one of these events, which was the largest and occurred under conditions that likely favoured infrasound propagation. The infrasound system recorded numerous other events not captured by the cameras, indicating the benefit of further investigation to determine their sources. These findings highlight the potential of infrasound technology for detecting avalanches and providing broad spatial coverage, capturing events in areas not monitored by cameras, while also showcasing limitations in infrasound capabilities. The limited detection of smaller avalanches underscores the opportunity for further research to enhance detection capabilities and understand environmental influences such as snow cover and wind noise. Overall, this study emphasises the utility of multidisciplinary monitoring techniques to improve avalanche detection in alpine environments.

Hooker Valley↗

USGS2026

Identifying overlap between native fish movements and a possible seasonal Grass Carp deterrent in the Sandusky River, Ohio, USA

Riverine fishes are vulnerable to habitat fragmentation caused by interrupted access to vital habitats. Fragmentation using artificial structures can be used to limit the spread of invasive fishes by inhibiting movement between critical habitats. Thus, tradeoffs exist between maintaining connectivity for native species and restricting movement of invasive fishes. A nonphysical deterrent has been proposed to prevent invasive Grass Carp ( Ctenopharyngodon idella ) from reaching spawning habitats in the Sandusky River, a tributary to Lake Erie, during late spring–summer. However, this timing overlaps with spawning periods of a suite of native fishes. We used acoustic telemetry and ichthyoplankton surveys to examine movement and spawning activity of multiple native species and to assess potential impacts of deterrent operation on reproduction. All species used the proposed deterrent location during the Grass Carp spawning period, and their movements corresponded with larval fish collections, indicating upstream spawning. These findings suggest the deterrent could unintentionally restrict native species’ access to essential habitats. Balancing habitat connectivity and invasive species control will likely depend on species-specific responses and careful timing of deterrent operation.

Ohio↗

USGS2025

Wet meadow regeneration through restoration of biophysical feedbacks

Wet meadows are globally significant ecosystems that provide critical hydrological, ecological, and biogeochemical functions, yet their extent has declined dramatically due to land use changes and hydrologic alteration. These sedge-dominated wetlands exist at the drier end of the wetland gradient, maintained by shallow groundwater and periodic inundation. This paper is a global synthesis of the ecological, geomorphic, and hydrological dynamics of wet meadows, with an emphasis on alluvial systems, to inform effective restoration strategies. We compare wet meadows to other wetlands, classify them into palustrine, lacustrine, and alluvial types, then focus on alluvial wet meadows and discuss how their formation and persistence depend on ground and surface water interactions, sediment deposition and flow obstructions, all mediated by biological processes. In particular, we highlight the role of hydric graminoids in resisting erosion and maintaining soil cohesion, how beaver promote meadow persistence, and the significance of wet meadows as carbon sinks. We also present stratigraphic evidence demonstrating that incision, often triggered by anthropogenic activity or changing climate, is the primary mechanism of alluvial wet meadow degradation, resulting in water table decline and shifts in vegetation composition. Restoration requires reversing these incisional processes through techniques that elevate water tables, disperse flow and retain sediment—methods traditionally associated with either soil conservation or stream restoration. These include nature-based solutions that create obstructions such as beaver dams and their analogues, rock and wood-based obstructions and incision trench or gully filling and grading. Given their multifunctional value—including but not limited to flood attenuation, biodiversity support, and carbon sequestration—wet meadows warrant a focused restoration framework. This review advocates for a valley-floor scale restoration paradigm that integrates hydrological reconnection, sediment retention, and biological reinforcement to ensure long-term resilience of these systems in the face of changing climate and land use pressures.

Frontiers in Environmental Science↗