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USGS1999

Changes in proximate composition and somatic energy content for Pacific sand lance ( Ammodytes hexapterus ) from Kachemak Bay, Alaska relative to maturity and season

Mean dry-weight energy values of adult Pacific sand lance ( Ammodytes hexapterus ) peaked in spring and early summer (20.91 kJg −1 for males, 21.08 kJg −1 for females), then declined by about 25% during late summer and fall (15.91 kJg −1 for males, 15.74 kJg −1 for females). Late summer declines in energy density paralleled gonadal development. Gender differences in energy density (males<females) were only apparent from August to October. Adult sand lance spawn in October, entering the winter with close to their minimum whole body energy content. Juvenile sand lance exhibited a relatively constant protein to lipid ratio until they reached 80 mm fork length. Thereafter, relative proportions of protein remained constant while lipid proportions increased significantly. Dry weight energy densities of juveniles increased from a minimum 16.67 kJg −1 to a maximum of 19.68 kJg −1 , and (per g) are higher than adults in late summer. The seasonal food value of adult sand lance to predators varies markedly, but maximum energetic value coincides with important feeding periods for marine mammals, fish, and seabirds.

Alaska↗

USGS2021

Corticosterone mediates a growth-survival tradeoff for an amphibian exposed to increased salinity

Life-history tradeoffs are common across taxa, but growth-survival tradeoffs—usually enhancing survival at a cost to growth—are less frequently investigated. Increased salinity (NaCl) is a prevalent anthropogenic disturbance that may cause a growth-survival tradeoff for larval amphibians. Although physiological mechanisms mediating tradeoffs are seldom investigated, hormones are prime candidates. Corticosterone (CORT) is a steroid hormone that independently influences survival and growth and may provide mechanistic insight into growth-survival tradeoffs. We conducted a 24-day experiment to test effects of salinity (<32–4000 mg/L) on growth, development, survival, CORT responses, and tradeoffs among traits of larval Northern Leopard Frogs ( Rana pipiens ). We also experimentally suppressed CORT signaling to determine whether CORT signaling mediates effects of salinity and a growth-survival tradeoff. Increased salinity reduced survival, growth, and development. Suppressing CORT signaling in conjunction with salinity reduced survival further but also attenuated the negative effects of salinity on growth, development, and water content. CORT of control larvae increased or was stable with growth and development but decreased with growth and development for those exposed to salinity. Therefore, salinity dysregulated CORT physiology. Across all treatments, larvae that survived had higher CORT than larvae that died. By manipulating CORT signaling, we provide strong evidence that CORT physiology mediates the outcome of a growth-survival tradeoff and enhances survival. To our knowledge, this is the first study to concomitantly measure tradeoffs between growth and survival and experimentally link these changes to CORT physiology. Identifying mechanistic links between stressors and fitness-related outcomes is critical to enhance our understanding of tradeoffs.

Journal of Experimental Zoology Part A: Comparativ↗

USGS2005

Cortisol receptor blockade and seawater adaptation in the euryhaline teleost Fundulus heteroclitus

To examine the role of cortisol in seawater osmoregulation in a euryhaline teleost, adult killifish were acclimated to brackish water (10???) and RU486 or vehicle was administered orally in peanut oil daily for five days at low (40 mg.kg-1) or high dose (200 mg.kg-1). Fish were transferred to 1.5 x seawater (45???) or to brackish water (control) and sampled at 24 h and 48 h after transfer, when Cl- secretion is upregulated. At 24 h, opercular membrane Cl- secretion rate, as Isc, was increased only in the high dose RU486 group. Stimulation of membranes by 3-isobutyl-1-methylxanthine and cAMP increased Isc in vehicle treated controls but those from RU486-treated animals were unchanged and membranes from brackish water animals showed a decrease in Isc. At 48 h, Isc increased and transepithelial resistance decreased in vehicle and RU486 groups, compared to brackish water controls. Plasma cortisol increased in all groups transferred to high salinity, compared to brackish water controls. RU486 treated animals had higher cortisol levels compared to vehicle controls. Vehicle treated controls had lower cortisol levels than untreated or RU486 treated animals, higher stimulation of Isc, and lower hematocrit at 24 h, beneficial effects attributed to increased caloric intake from the peanut oil vehicle. Chloride cell density was significantly increased in the high dose RU486 group at 48 hours, yet Isc was unchanged, suggesting a decrease in Cl- secretion per cell. Thus cortisol enhances NaCl secretion capacity in chloride cells, likely via glucocorticoid type receptors. ?? 2005 Wiley-Liss, Inc.

Journal of Experimental Zoology Part A: Comparativ↗

USGS1995

Journal news

Statistical power (and conversely, Type II error) is often ignored by biologists. Power is important to consider in the design of studies, to ensure that sufficient resources are allocated to address a hypothesis under examination. Deter- mining appropriate sample size when designing experiments or calculating power for a statistical test requires an investigator to consider the importance of making incorrect conclusions about the experimental hypothesis and the biological importance of the alternative hypothesis (or the biological effect size researchers are attempting to measure). Poorly designed studies frequently provide results that are at best equivocal, and do little to advance science or assist in decision making. Completed studies that fail to reject Ho should consider power and the related probability of a Type II error in the interpretation of results, particularly when implicit or explicit acceptance of Ho is used to support a biological hypothesis or management decision. Investigators must consider the biological question they wish to answer (Tacha et al. 1982) and assess power on the basis of biologically significant differences (Taylor and Gerrodette 1993). Power calculations are somewhat subjective, because the author must specify either f or the minimum difference that is biologically important. Biologists may have different ideas about what values are appropriate. While determining biological significance is of central importance in power analysis, it is also an issue of importance in wildlife science. Procedures, references, and computer software to compute power are accessible; therefore, authors should consider power. We welcome comments or suggestions on this subject.

Journal of Wildlife Management↗

USGS2003

Comparative hydraulics of two fishery research circular tanks and recommendations for control of experimental bias

Hydraulic characteristics inside two research circular tanks (1.5-m and 1.2-m diameter) with the same volume of water were studied to understand how they might affect experimental bias by influencing the behavior and development of juvenile fish. Water velocities inside each tank were documented extensively and flow behavior studied. Surface inflow to the 1.5-m tank created a highly turbulent and aerated surface, and produced unevenly distributed velocities within the tank. A low-flow velocity, or "dead" zone, persisted just upstream of the surface inflow. A single submerged nozzle in the 1.2-m tank created uniform flow and did not cause undue turbulence or introduce air. Flow behavior in the 1.5-m tank is believed to have negatively affected the feeding behavior and physiological development of a group of juvenile fall chinook salmon, Oncorhynchus tshawytscha. A new inflow nozzle design provided comparable flow behavior regardless of tank size and water depth. Maintaining similar hydraulic conditions inside tanks used for various biological purposes, including fish research, would minimize experimental bias caused by differences in flow behavior. Other sources of experimental bias are discussed and recommendations given for reporting and control of experimental conditions in fishery research tank experiments.

Journal of Applied Aquaculture↗

USGS2023

Resource-driven pattern formation in consumer-resource systems with asymmetric dispersal on a plane

This paper considers resource-driven pattern formation in consumer-resource systems. Here, a planar pattern consists of many big patches, and a big patch can be regarded as combination of many patches on the plane. The consumer moves between patches asymmetrically, while the asymmetry is driven by the resource abundance. Based on experimental models with linearly-linked patches, we propose a planarly-linked-patch model with asymmetric dispersal. Using dynamical systems theory, we show global stability of equilibria in the model, and demonstrate how the resource-driven dispersal forms patterns. It is shown that appropriate asymmetry in dispersal would make the consumer persist in the system, even in sink patches. The asymmetry could also make the consumer’s total population abundance larger than that without dispersal. However, inappropriate asymmetry would make the consumer go into extinction, even in source patches. Dispersal rates are also shown to play a role in the persistence and abundance increase. Our results are consistent with experimental observations and provide new insights. Numerical simulations by the model reproduce various vegetation patterns in the real world. This work has potential applications in spatial pattern formation in biological research.

SIAM Journal on Applied Mathematics↗

USGS2023

Assessing contaminants of emerging concern in the Great Lakes Ecosystem: A decade of method development and practical application

Assessing the ecological risk of contaminants in the field typically involves consideration of a complex mixture of compounds which may or may not be detected via instrumental analyses. Further, there are insufficient data to predict the potential biological effects of many detected compounds, leading to their being characterized as contaminants of emerging concern (CECs). Over the past several years, advances in chemistry, toxicology, and bioinformatics have resulted in a variety of concepts and tools that can enhance the pragmatic assessment of the ecological risk of CECs. The present Focus article describes a 10+- year multiagency effort supported through the U.S. Great Lakes Restoration Initiative to assess the occurrence and implications of CECs in the North American Great Lakes. State-of-the-science methods and models were used to evaluate more than 700 sites in about approximately 200 tributaries across lakes Ontario, Erie, Huron, Michigan, and Superior, sometimes on multiple occasions. Studies featured measurement of up to 500 different target analytes in different environmental matrices, coupled with evaluation of biological effects in resident species, animals from in situ and laboratory exposures, and in vitro systems. Experimental taxa included birds, fish, and a variety of invertebrates, and measured endpoints ranged from molecular to apical responses. Data were integrated and evaluated using a diversity of curated knowledgebases and models with the goal of producing actionable insights for risk assessors and managers charged with evaluating and mitigating the effects of CECs in the Great Lakes. This overview is based on research and data captured in approximately about 90 peer-reviewed journal articles and reports, including approximately about 30 appearing in a virtual issue comprised of highlighted papers published in Environmental Toxicology and Chemistry or Integrated Environmental Assessment and Management . Environ Toxicol Chem 2023;42:2506–2518. © 2023 SETAC. This article has been contributed to by U.S. Government employees and their work is in the public domain in the USA.

Environmental Toxicology and Chemistry↗

USGS2010

Suspended-sediment concentration regimes for two biological reference streams in Middle Tennessee

Temporal patterns of suspended-sediment concentration (SSC) duration and frequency (SSC regimes) were characterized and compared with biological impairment thresholds for two headwater streams in the Western Highland Rim of Tennessee. The SSC regimes were plotted as curves showing concentrations and durations of the annual longest and tenth-longest SSC excursions above 18 concentrations for water years 2005-2008 in Copperas Branch and water years 2006 and 2008 in Kelley Creek. Both streams have fish communities remarkably diverse for their small drainage basin areas (420 and 565 ha, respectively), and represent biological reference conditions with respect to SSC. SSC-regime curves were similar for the two sites across water years. The measured SSC regimes reached or exceeded published experimentally based SSC impairment thresholds and plotted below a proposed long-term SSC reference regime for the Interior Plateau ecoregion (Ecoregion 71), suggesting that neither the experimentally based thresholds nor the proposed SSC reference regime adequately reflect the relation between SSC and biological impairment for Western Highland Rim headwater streams. The SSC regimes of the two study streams were similar to the estimated SSC regime of an unimpaired East Tennessee trout stream. Additional field studies are needed to describe SSC regimes in streams of varying basin scale, level of impairment, and region.

Tennessee↗

USGS2011

Assessing first-order emulator inference for physical parameters in nonlinear mechanistic models

We present an approach for estimating physical parameters in nonlinear models that relies on an approximation to the mechanistic model itself for computational efficiency. The proposed methodology is validated and applied in two different modeling scenarios: (a) Simulation and (b) lower trophic level ocean ecosystem model. The approach we develop relies on the ability to predict right singular vectors (resulting from a decomposition of computer model experimental output) based on the computer model input and an experimental set of parameters. Critically, we model the right singular vectors in terms of the model parameters via a nonlinear statistical model. Specifically, we focus our attention on first-order models of these right singular vectors rather than the second-order (covariance) structure.

Journal of Agricultural, Biological, and Environme↗

USGS2022

Nutrient restoration of a large, impounded, ultra-oligotrophic western river to recover declining native fishes

Declines in many fish populations in large, western rivers have been primarily attributed to the anthropogenic reduction of nutrient inputs and subsequent impacts to the food web. The largest known river fertilization program was implemented starting in 2005 on the Kootenai River in northern Idaho to restore resident fisheries. Annual electrofishing surveys were conducted at multiple sites in Idaho and Montana before and during nutrient addition to evaluate assemblage and population-level responses. Although few responses in fish assemblage structure were observed, the addition of liquid ammonium polyphosphate fertilizer (3 μg/L) to the Kootenai River increased fish abundance and biomass over the 20-km stretch of river downstream of the treatment site. Increases were most notable in Largescale Suckers Catostomus macrocheilus, Mountain Whitefish Prosopium williamsoni , and Rainbow Trout Oncorhynchus mykiss populations, although increases in catch and biomass were detected for nearly all fish species . The Kootenai River is approximately 30 times larger in discharge than other rivers that have been experimentally fertilized and provides compelling evidence that the mitigation of nutrient declines in rivers of similar size can result in positive influences on the fish populations where primary and secondary production are limiting growth, survival, and recruitment. However, results from our study also highlight the importance of completing evaluations across varying levels of biological organization (e.g., assemblage and population) and over biologically relevant timeframes.

Idaho, Montana↗

USGS2013

High-density grass carp stocking effects on a reservoir invasive plant and water quality

Stocking grass carp [Ctenopharyngodon idella (Valenciennes)] is a commonly applied technique to control nuisance aquatic vegetation in reservoirs. Factors that influence the degree of aquatic vegetation control are fish stocking density, regional climate, abundance and species composition of the aquatic plant community, and relative grass carp feeding preferences for plant species. We evaluated high-density grass carp stocking in a southeastern U.S. reservoir for control of parrot-feather [Myriophyllum aquaticum (Vell) Verdc.], an invasive aquatic plant that is not preferentially consumed by grass carp and the associated effects on water quality. Lookout Shoals Lake, a 528-ha piedmont North Carolina reservoir, was stocked with triploid grass carp at a density of 100 fish per vegetated hectare. Parrot-feather biomass in the lake was significantly reduced three months after grass carp stocking, compared to biomass in in-situ exclosures. During the second year after grass carp stocking, parrot-feather biomass in the lake compared to biomass in in-situ exclosures indicated continued control, but unexplained lack of growth within most experimental exclosures precluded biomass analyses. Increases in ambient water chlorophyll a, reactive phosphorus, and nitrate-nitrite concentrations were measured after grass carp stocking. The biological significance of observed changes in water chemistry and long-term effects on lake biota remain undetermined. Our results demonstrate that intensive grass carp stocking can control an invasive aquatic plant that is not preferentially consumed by grass carp and reveal associated changes in water quality.

North Carolina↗

USGS2005

Are all prey created equal? A review and synthesis of differential predation on prey in substandard condition

Our understanding of predator-prey interactions in fishes has been influenced largely by research assuming that the condition of the participants is normal. However, fish populations today often reside in anthropogenically altered environments and are subjected to many kinds of stressors, which may reduce their ecological performance by adversely affecting their morphology, physiology, or behaviour. One consequence is that either the predator or prey, or both, may be in a substandard condition at the time of an interaction. We reviewed the literature on predator-prey interactions in fishes where substandard prey were used as experimental groups. Although most of this research indicates that such prey are significantly more vulnerable to predation, prey condition has rarely been considered in ecological theory regarding predator-prey interactions. The causal mechanisms for increased vulnerability of substandard prey to predation include a failure to detect predators, lapses in decision-making, poor fast-start performance, inability to shoal effectively, and increased prey conspicuousness. Despite some problems associated with empirical predator-prey studies using substandard prey, their results can have theoretical and applied uses, such as in ecological modelling or justification of corrective measures to be implemented in the wild. There is a need for more corroborative field experimentation, a better understanding of the causal mechanisms behind differential predation, and increased incorporation of prey condition into the research of predator-prey modellers and theoreticians. If the concept of prey condition is considered in predator-prey interactions, our understanding of how such interactions influence the structure and dynamics of fish communities is likely to change, which should prove beneficial to aquatic ecosystems.

Journal of Fish Biology↗

USGS2021

A common garden super-experiment: An impossible dream to inspire possible synthesis

Global change threatens plant diversity and disrupts its interrelationship with ecosystem structure and function. This disruption in turn undermines confidence in the knowledge ecologists produce, and whether it will translate into multidisciplinary research settings or guide the effective management of natural lands. To address this challenge, ecology needs to consider the interactions between different levels of biological hierarchy, especially how they feedback on, and are mediated by, plant diversity. Doing so will require conducting empirical work and developing theory that simultaneously considers multiple disciplinary perspectives and units of study. Here we advocate the use of common gardens to integrate ecology, evolutionary biology, and ecosystem science through an explicit focus on simultaneous measurement of response variables at multiple levels of biological organization. This approach will provide opportunities to evaluate assumptions important to prediction, such as space-for-time substitution, and tackle the integration of physicochemical and eco-evolutionary foundations to understanding plants and ecosystems. Synthesis: We summarize the large body of research on Sonoran Desert winter annuals to demonstrate how experimental designs that employ common gardens to integrate processes across scales hold special promise. This includes refining trait-based theories of plant strategies, providing insight into ecosystem responses to global change, and collaborating effectively with other scientific disciplines.

Journal of Ecology↗

USGS1963

Disease and infection in the Tetraonidae

Disease is one of many factors advanced to explain the fluctuations of grouse populations, but no profound study of natural disease losses in Tetraonidae exists. The literature contains frequent references to THE grouse disease, although many potential pathogens are listed in numerous surveys and limited investigations, and the relevant data indicate that no single etiologic agent is universally responsible for disease in grouse. Few experimental infections or related studies on parasite biology have been attempted. Well-trained personnel and specialized facilities are required for research and analysis (1) to develop new methods of interpretation to be used with existing census techniques, (2) to conduct intensive studies of ecological factors of host and habitat, and (3) to establish base lines for recognition of deviations from the norm. Disease in wildlife can be controlled only through management procedures based on information concerning the biology of pathogens, hosts, and environments. It cannot be studied as a separate entity if its impact on survival or population fluctuations of grouse is to be correctly assessed.

Journal of Wildlife Management↗

USGS2000

Preliminary study of gill NA+,K+-ATPase activity in juvenile spring chinook salmon following electroshock or handling stress

We compared gill Na+,K+-ATPase in subyearling and yearling spring chinook salmon Oncorhynchus tshawytscha 3 h, 24 h, and 7 d after exposure to either a short pulsed DC electroshock (300 V, 50 Hz, 8-ms pulse duration) or an acute handling stress. Mean gill Na+,K+-ATPase values ranged from 7.5 to 11.8 ??mol inorganic phosphate (Pi) ?? (mg protein)-1 ?? h-1. No significant differences were detected, with the exception of electroshocked subyearlings 7 d after treatment. Increased activity was attributed to the presence of two influential values. No significant differences were detected after removal of these observations, so the increase was not considered biologically significant. Inclusion of the outliers did not alter our interpretation of the results given that the observed increase was slight compared with the magnitude of changes reported under experimental conditions and in migrating juvenile salmonids. The treatment groups underwent a typical stress response and had significantly elevated cortisol and glucose levels 3 h after treatment. Recovery to control levels occurred within 24 h for cortisol and from 24 h to 7 d for glucose. Our results lead to the conclusion that neither acute electroshock nor acute handling stress alters Na+,K+-ATPase activity in juvenile spring chinook salmon.

North American Journal of Fisheries Management↗

USGS2014

Nutritional stress affects corticosterone deposition in feathers of Caspian tern chicks

Stressful environmental conditions affect the adrenocortical function of developing animals, which can have consequences for their fitness. Discovery of the avian stress hormone corticosterone (CORT) in feathers has the potential to broaden the application of endocrine research in ecological and evolutionary studies of wild birds by providing a long-term measure of CORT secretion. Mechanisms of CORT deposition in feathers are not well known and few studies have related feather CORT to circulating plasma CORT during feather growth. Our objective was to experimentally test the validity of using feather CORT as a measure of CORT secretion in developing birds experiencing nutritional stress. Caspian tern Hydroprogne caspia chicks were fed ad libitum or restricted (35% less than ad libitum) diets for four weeks. We measured CORT in feathers from these chicks to examine the relationship between feather CORT concentrations and nutritional limitation, circulating plasma CORT, and feather development. We found that feather CORT was higher in controls fed ad libitum than in restricted individuals, despite higher levels of plasma CORT in restricted chicks compared to controls. Feather mass and growth rates were strongly and positively related to feather CORT concentrations in both treatments. This is the first experimental study to show that feather CORT concentrations can be lower in response to nutritional stress, even when plasma CORT concentrations are elevated. Our results indicate that CORT deposition in feathers may be confounded when feather mass and growth rates are compromised by nutritional stress. We conclude that feather CORT can be used for assessing nutritional stress in growing birds, but the direction of response depends on how strongly stress affects feather development.

Journal of Avian Biology↗

USGS2011

Preference of redear sunfish on zebra mussels and rams-horn snails

We tested prey preferences of adult (200- to 222-mm long) redear sunfish ( Lepomis microlophus ) on two size classes of zebra mussels ( Dreissena polymorpha ) and two-ridge rams-horns ( Helisoma anceps ) in experimental aquaria. We also tested physical limitations on consuming these mollusks and determined prey bioenergetic profitability. Redear sunfish strongly preferred rams-horns over zebra mussels, but they displayed no size preference for either prey. Ingestion was not physically limited since both prey species up to 15-mm long fit within the pharyngeal gapes of redear sunfish. Rams-horns were more bioenergetically profitable than zebra mussels and ingestion of rams-horn shell fragments was about three times less than zebra mussels. Rams-horns were somewhat more resistant to shell-crushing, but all size ranges of both prey species tested were crushable by redear sunfish. These studies suggested that the redear sunfish should not be considered a panacea for biological control of zebra mussels.

Journal of Freshwater Ecology↗

USGS2015

Survival, growth, and tag retention in age-0 Chinook Salmon implanted with 8-, 9-, and 12-mm PIT tags

The ability to represent a population of migratory juvenile fish with PIT tags becomes difficult when the minimum tagging size is larger than the average size at which fish begin to move downstream. Tags that are smaller (e.g., 8 and 9 mm) than the commonly used 12-mm PIT tags are currently available, but their effects on survival, growth, and tag retention in small salmonid juveniles have received little study. We evaluated growth, survival, and tag retention in age-0 Chinook Salmon Oncorhynchus tshawytscha of three size-groups: 40–49-mm fish were implanted with 8- and 9-mm tags, and 50– 59-mm and 60–69-mm fish were implanted with 8-, 9-, and 12-mm tags. Survival 28 d after tagging ranged from 97.8% to 100% across all trials, providing no strong evidence for a fish-size-related tagging effect or a tag size effect. No biologically significant effects of tagging on growth in FL (mm/d) or weight (g/d) were observed. Although FL growth in tagged fish was significantly reduced for the 40–49-mm and 50–59-mm groups over the first 7 d, growth rates were not different thereafter, and all fish were similar in size by the end of the trials (day 28). Tag retention across all tests ranged from 93% to 99%. We acknowledge that actual implantation of 8- or 9-mm tags into small fish in the field will pose additional challenges (e.g., capture and handling stress) beyond those observed in our laboratory. However, we conclude that experimental use of the smaller tags for small fish in the field is supported by our findings.

North American Journal of Fisheries Management↗