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USGS2024

Linking dissolved organic matter composition to landscape properties in wetlands across the United States of America

Wetlands are integral to the global carbon cycle, serving as both a source and a sink for organic carbon. Their potential for carbon storage will likely change in the coming decades in response to higher temperatures and variable precipitation patterns. We characterized the dissolved organic carbon (DOC) and dissolved organic matter (DOM) composition from 12 different wetland sites across the USA spanning gradients in climate, landcover, sampling depth, and hydroperiod for comparison to DOM in other inland waters. Using absorption spectroscopy, parallel factor analysis modeling, and ultra-high resolution mass spectroscopy, we identified differences in DOM sourcing and processing by geographic site. Wetland DOM composition was driven primarily by differences in landcover where forested sites contained greater aromatic and oxygenated DOM content compared to grassland/herbaceous sites which were more aliphatic and enriched in N and S molecular formulae. Furthermore, surface and porewater DOM was also influenced by properties such as soil type, organic matter content, and precipitation. Surface water DOM was relatively enriched in oxygenated higher molecular weight formulae representing HUP High O/C compounds than porewaters, whose DOM composition suggests abiotic sulfurization from dissolved inorganic sulfide. Finally, we identified a group of persistent molecular formulae (3,489) present across all sites and sampling depths (i.e., the signature of wetland DOM) that are likely important for riverine-to-coastal DOM transport. As anthropogenic disturbances continue to impact temperate wetlands, this study highlights drivers of DOM composition fundamental for understanding how wetland organic carbon will change, and thus its role in biogeochemical cycling.

Global Biogeochemical Cycles↗

USGS2016

Direct observations of ice seasonality reveal changes in climate over the past 320–570 years

Lake and river ice seasonality (dates of ice freeze and breakup) responds sensitively to climatic change and variability. We analyzed climate-related changes using direct human observations of ice freeze dates (1443–2014) for Lake Suwa, Japan, and of ice breakup dates (1693–2013) for Torne River, Finland. We found a rich array of changes in ice seasonality of two inland waters from geographically distant regions: namely a shift towards later ice formation for Suwa and earlier spring melt for Torne, increasing frequencies of years with warm extremes, changing inter-annual variability, waning of dominant inter-decadal quasi-periodic dynamics, and stronger correlations of ice seasonality with atmospheric CO2 concentration and air temperature after the start of the Industrial Revolution. Although local factors, including human population growth, land use change, and water management influence Suwa and Torne, the general patterns of ice seasonality are similar for both systems, suggesting that global processes including climate change and variability are driving the long-term changes in ice seasonality.

Torne River, Lake Suwa↗

USGS2015

Ancient low–molecular-weight organic acids in permafrost fuel rapid carbon dioxide production upon thaw

Northern permafrost soils store a vast reservoir of carbon, nearly twice that of the present atmosphere. Current and projected climate warming threatens widespread thaw of these frozen, organic carbon (OC)-rich soils. Upon thaw, mobilized permafrost OC in dissolved and particulate forms can enter streams and rivers, which are important processors of OC and conduits for carbon dioxide (CO 2 ) to the atmosphere. Here, we demonstrate that ancient dissolved organic carbon (DOC) leached from 35,800 y B.P. permafrost soils is rapidly mineralized to CO 2 . During 200-h experiments in a novel high–temporal-resolution bioreactor, DOC concentration decreased by an average of 53%, fueling a more than sevenfold increase in dissolved inorganic carbon (DIC) concentration. Eighty-seven percent of the DOC loss to microbial uptake was derived from the low–molecular-weight (LMW) organic acids acetate and butyrate. To our knowledge, our study is the first to directly quantify high CO 2 production rates from permafrost-derived LMW DOC mineralization. The observed DOC loss rates are among the highest reported for permafrost carbon and demonstrate the potential importance of LMW DOC in driving the rapid metabolism of Pleistocene-age permafrost carbon upon thaw and the outgassing of CO 2 to the atmosphere by soils and nearby inland waters.

PNAS↗

USGS2021

USGS CEOS analysis ready data for land achievements and future plans

The efforts of the Committee on Earth Observation Satellites (CEOS) to bring CEOS Analysis Ready Data for Land (CARD4L) products to countries and international organizations quickly and easily continues to receive important support from the U.S. Geological Survey (USGS). As part of its engagement with CARD4L, the USGS worked to address specific Threshold and Target Product Family Specification (PFS) requirements for its Landsat Collection 2 Level-2 science products and in July 2020, received formal CEOS endorsement for 100 percent CARD4L-compliance at the Threshold level for Collection 2 surface reflectance and surface temperature. This endorsement ensures these products meet a level of interoperability with data from other Earth-observing platforms, such as Europe's Sentinel-2 satellites, as the European Space Agency also works toward CARD4L-compliant products. In addition to the Collection 2 Level-2 land surface data products, the USGS recognizes Landsat's potential to make a valuable contribution to aquatic science and environmental monitoring capabilities for aquatic ecosystems, especially in coastal and inland waters. Working with subject matter experts, the USGS has been coordinating an international agency effort to establish a new CARD4L PFS for aquatic reflectance to be considered for CEOS endorsement in 2021.

Conference Paper↗

USGS2022

Impact of spectral resolution on quantifying cyanobacteria in lakes and reservoirs: A machine-learning assessment

Cyanobacterial harmful algal blooms are an increasing threat to coastal and inland waters. These blooms can be detected using optical radiometers due to the presence of phycocyanin (PC) pigments. The spectral resolution of best-available multispectral sensors limits their ability to diagnostically detect PC in the presence of other photosynthetic pigments. To assess the role of spectral resolution in the determination of PC, a large (N = 905) database of colocated in situ radiometric spectra and PC are employed. We first examine the performance of selected widely used machine-learning (ML) models against that of benchmark algorithms for hyperspectral remote sensing reflectance ( R r s ) spectra resampled to the spectral configuration of the Hyperspectral Imager for the Coastal Ocean (HICO) with a full-width at half-maximum (FWHM) of < 6 nm. Results show that the multilayer perceptron (MLP) neural network applied to HICO spectral configurations (median errors < 65%) outperforms other ML models. This model is subsequently applied to R r s spectra resampled to the band configuration of existing satellite instruments and of the one proposed for the next Landsat sensor. These results confirm that employing MLP models to estimate PC from hyperspectral data delivers tangible improvements compared with retrievals from multispectral data and benchmark algorithms (with median errors between ~73% and 126%) and shows promise for developing a globally applicable cyanobacteria measurement approach.

IEEE Transactions in Geoscience and Remote Sensing↗

USGS2023

Parentage-based tagging using mothers balances accuracy and cost for discriminating between natural and stocked recruitment for inland fisheries

Hatchery programmes are frequently used to supplement inland fisheries, yet achieving successful management outcomes often requires information on stocked versus naturally reproduced fish abundance. Parentage-based tagging – genetically assigning offspring to their parents – has potential to be an effective approach for distinguishing stocked and naturally reproduced fish. However, several challenges may limit its application to inland fisheries, including genetic relatedness among populations that can affect identification accuracy and high costs of genotyping large broodstocks. Here, we demonstrate the efficacy of parentage-based tagging based on broodmothers in the Lake Ontario Chinook Salmon fishery, which uses thousands of broodparents and has potential for substantial relatedness between stocked and naturally reproduced fish. Restricting parent sampling to broodmothers reduced costs by two-thirds, was logistically pragmatic, and achieved >95% accuracy in distinguishing stocked from naturally reproduced salmon. Combined, these results highlight the potential wide applicability of parentage-based tagging for assessing stocking programmes in inland waters.

New York, Ontario↗

USGS2017

Abundant carbon substrates drive extremely high sulfate reduction rates and methane fluxes in Prairie Pothole Wetlands

Inland waters are increasingly recognized as critical sites of methane emissions to the atmosphere, but the biogeochemical reactions driving such fluxes are less well understood. The Prairie Pothole Region (PPR) of North America is one of the largest wetland complexes in the world, containing millions of small, shallow wetlands. The sediment pore waters of PPR wetlands contain some of the highest concentrations of dissolved organic carbon (DOC) and sulfur species ever recorded in terrestrial aquatic environments. Using a suite of geochemical and microbiological analyses, we measured the impact of sedimentary carbon and sulfur transformations in these wetlands on methane fluxes to the atmosphere. This research represents the first study of coupled geochemistry and microbiology within the PPR and demonstrates how the conversion of abundant labile DOC pools into methane results in some of the highest fluxes of this greenhouse gas to the atmosphere ever reported. Abundant DOC and sulfate additionally supported some of the highest sulfate reduction rates ever measured in terrestrial aquatic environments, which we infer to account for a large fraction of carbon mineralization in this system. Methane accumulations in zones of active sulfate reduction may be due to either the transport of free methane gas from deeper locations or the co-occurrence of methanogenesis and sulfate reduction. If both respiratory processes are concurrent, any competitive inhibition of methanogenesis by sulfate-reducing bacteria may be lessened by the presence of large labile DOC pools that yield noncompetitive substrates such as methanol. Our results reveal some of the underlying mechanisms that make PPR wetlands biogeochemical hotspots, which ultimately leads to their critical, but poorly recognized role in regional greenhouse gas emissions.

North Dakota↗

USGS2013

Coastal flood inundation monitoring with Satellite C-band and L-band Synthetic Aperture Radar data

Satellite Synthetic Aperture Radar (SAR) was evaluated as a method to operationally monitor the occurrence and distribution of storm- and tidal-related flooding of spatially extensive coastal marshes within the north-central Gulf of Mexico. Maps representing the occurrence of marsh surface inundation were created from available Advanced Land Observation Satellite (ALOS) Phased Array type L-Band SAR (PALSAR) (L-band) (21 scenes with HH polarizations in Wide Beam [100 m]) data and Environmental Satellite (ENVISAT) Advanced SAR (ASAR) (C-band) data (24 scenes with VV and HH polarizations in Wide Swath [150 m]) during 2006-2009 covering 500 km of the Louisiana coastal zone. Mapping was primarily based on a decrease in backscatter between reference and target scenes, and as an extension of previous studies, the flood inundation mapping performance was assessed by the degree of correspondence between inundation mapping and inland water levels. Both PALSAR- and ASAR-based mapping at times were based on suboptimal reference scenes; however, ASAR performance seemed more sensitive to reference-scene quality and other types of scene variability. Related to water depth, PALSAR and ASAR mapping accuracies tended to be lower when water depths were shallow and increased as water levels decreased below or increased above the ground surface, but this pattern was more pronounced with ASAR. Overall, PALSAR-based inundation accuracies averaged 84% (n = 160), while ASAR-based mapping accuracies averaged 62% (n = 245).

Louisiana↗

USGS2013

Comparative susceptibility among three stocks of yellow perch, Perca flavescens (Mitchill), to viral haemorrhagic septicaemia virus strain IVb from the Great Lakes

The Great Lakes strain of viral haemorrhagic septicaemia virus IVb (VHSV-IVb) is capable of infecting a wide number of naive species and has been associated with large fish kills in the Midwestern United States since its discovery in 2005. The yellow perch, Perca flavescens (Mitchill), a freshwater species commonly found throughout inland waters of the United States and prized for its high value in sport and commercial fisheries, is a species documented in several fish kills affiliated with VHS. In the present study, differences in survival after infection with VHSV IVb were observed among juvenile fish from three yellow perch broodstocks that were originally derived from distinct wild populations, suggesting innate differences in susceptibility due to genetic variance. While all three stocks were susceptible upon waterborne exposure to VHS virus infection, fish derived from the Midwest (Lake Winnebago, WI) showed significantly lower cumulative % survival compared with two perch stocks derived from the East Coast (Perquimans River, NC and Choptank River, MD) of the United States. However, despite differences in apparent susceptibility, clinical signs did not vary between stocks and included moderate-to-severe haemorrhages at the pelvic and pectoral fin bases and exophthalmia. After the 28-day challenge was complete, VHS virus was analysed in subsets of whole fish that had either survived or succumbed to the infection using both plaque assay and quantitative PCR methodologies. A direct correlation was identified between the two methods, suggesting the potential for both methods to be used to detect virus in a research setting.

Great Lakes↗

USGS1981

Zooplankton fecal pellets link fossil fuel and phosphate deposits

Fossil zooplankton fecal pellets found in thinly bedded marine and lacustrine black shales associated with phosphate, oil, and coal deposits, link the deposition of organic matter and biologically associated minerals with planktonic ecosystems. The black shales were probably formed in the anoxic basins of coastal marine waters, inland seas, and rift valley lakes where high productivity was supported by runoff, upwelling, and outwelling.

Science↗

USGS2014

Marine and inland fishes of St. Croix, U. S. Virgin Islands: an annotated checklist

An historical account is given for the ichthyological research at St. Croix, U. S. Virgin Islands, followed by an annotated list of 544 species of mostly marine shore fishes known or reported from the island to depths of 200 m. Color photographs are included for 103 of these species. Collections made at Buck Island Reef National Monument with the ichthyocide rotenone in 2001 and 2005 increased the known ichthyofauna by about 80 species. The rational for inclusion of each species in the checklist is given, with remarks for those species for which additional documentation or voucher specimens are needed. Reports of species known or presumed to have been based on misidentifications are discussed. Of the total marine fish fauna of the island, 404 species (75%) are restricted to the western Atlantic Ocean, (223 of these species are essentially Caribbean endemics that do not occur south of the Amazon River outflow), and no St. Croix endemic species are known. An additional 17 species (3.2%) also occur at mid-Atlantic islands, 57 species (10.6 %) are limited to both sides of the Atlantic Ocean, and 40 species (7.4%) have circumtropical distributions. The four most species-rich families are the Gobiidae (47 species), Serranidae (groupers and sea basses, 41), Labridae (wrasses and parrotfishes, 31), and Labrisomidae (scaly blennies, 27). Literature reports of Mosquitofish, Gambusia sp., from St. Croix apparently were based on misidentifications of a different introduced poeciliid genus. Four species of the amphidromus goby genus Sicydium occur in St. Croix inland waters, together with three established introduced species (one cichlid and two poeciliids). Also included are one catfish (Ictaluridae) and three sunfishes (Centrarchidae) known only from ponds. The Lionfish, Pterois volitans , the only introduced marine species, was first reported from St. Croix in 2008 and is now common despite control efforts.

Caribbean;St. Croix↗

USGS2015

The relationship between vessel traffic and noise levels received by killer whales ( Orcinus orca )

Whale watching has become increasingly popular as an ecotourism activity around the globe and is beneficial for environmental education and local economies. Southern Resident killer whales ( Orcinus orca ) comprise an endangered population that is frequently observed by a large whale watching fleet in the inland waters of Washington state and British Columbia. One of the factors identified as a risk to recovery for the population is the effect of vessels and associated noise. An examination of the effects of vessels and associated noise on whale behavior utilized novel equipment to address limitations of previous studies. Digital acoustic recording tags (DTAGs) measured the noise levels the tagged whales received while laser positioning systems allowed collection of geo-referenced data for tagged whales and all vessels within 1000 m of the tagged whale. The objective of the current study was to compare vessel data and DTAG recordings to relate vessel traffic to the ambient noise received by tagged whales. Two analyses were conducted, one including all recording intervals, and one that excluded intervals when only the research vessel was present. For all data, significant predictors of noise levels were length (inverse relationship), number of propellers, and vessel speed, but only 15% of the variation in noise was explained by this model. When research-vessel-only intervals were excluded, vessel speed was the only significant predictor of noise levels, and explained 42% of the variation. Simple linear regressions (ignoring covariates) found that average vessel speed and number of propellers were the only significant correlates with noise levels. We conclude that vessel speed is the most important predictor of noise levels received by whales in this study. Thus, measures that reduce vessel speed in the vicinity of killer whales would reduce noise exposure in this population.

Vancouver, Washington↗

USGS2024

Assessing and implementing the concept of Blue Economy in Laurentian Great Lakes fisheries: Lessons from coupled human and natural systems

Inland fisheries often receive little to no attention in global discussions about sustainable development. The consequences of overlooking inland fisheries in sustainability dialogues are increasingly problematic as fisheries stressors (e.g., overharvest, species invasion, climate change, habitat modification) intensify. Elevating the global profile of inland fisheries requires an approach for quantifying and clearly conveying the ecological, economic, and societal values of these systems. One such approach involves the Blue Economy, a multifaceted concept initially used to describe the intersection of marine conservation and sustainable use of marine resources for economic growth. Although conceptually powerful, the Blue Economy has rarely been applied to inland waters and fisheries. To address this knowledge gap, we conceptualized Laurentian Great Lakes fisheries from a Blue Economy perspective. In particular, we evaluated the utility of the coupled human and natural systems (CHANS) framework for characterizing the ecological, economic, and societal values of Laurentian Great Lakes fisheries and associated contributions to the Blue Economy (e.g., human livelihoods, food security, recreation, conservation, economic prosperity). There are numerous opportunities to leverage CHANS methods (e.g., metacoupling, telecoupling) and associated mathematical models to advance fisheries science, inform fisheries management, and ultimately move toward a Blue Economy in the Laurentian Great Lakes. To that end, we demonstrated applications of CHANS methods, discussed strategies for communicating with stakeholders, and provided insights for navigating challenges to developing a Blue Economy in the Laurentian Great Lakes—a model that could be used in the African Great Lakes and other large ecosystems in the world.

Laurentian Great Lakes↗

USGS2022

Gill-net selectivity for fifteen fish species of the upper San Francisco Estuary

Gill-net size selectivity for 15 fish species occurring in the upper San Francisco Estuary was estimated from a data set compiled from multiple studies which together contained 7,096 individual fish observations from 882 gill net sets. The gill nets considered in this study closely resembled the American Fisheries Society’s recommended standardized experimental gill nets for sampling inland waters. Relationships between gill-net mesh sizes and the sizes for each fish species retained in them were estimated indirectly using generalized linear modeling and maximum likelihood. Selectivity curves are provided for each species to inform researchers about population characteristics of fishes sampled with similar gill nets.

California↗

USGS2000

Effects of thiamine on reproduction of Atlantic salmon and a new hypothesis for their extirpation in Lake Ontario

Previous researchers demonstrated that a mortality in fry (called Cayuga syndrome) of Atlantic salmon Salmo salar from Cayuga Lake (New York) was associated with low levels of thiamine. They reduced the mortality of fry by bathing or injecting fry with thiamine. We injected four to six gravid female Atlantic salmon with either physiological saline (PS) or PS plus thiamine (7 mg/kg weight) 14–23 d before eggs were stripped, fertilized, and incubated in individual lots. Chemical analyses showed that eggs from control and treated salmon contained 1.1 and 1.6 nmol thiamine/g, respectively. Thiamine injections had no significant effect on the percentage of eggs that hatched. Between 700 and 800 Celius degree-days postfertilization, control fry (saline) showed signs of Cayuga syndrome and a 45% incidence of mortality; in contrast, mortality was only 1.9% for fry that received thiamine. By 1,078 degree-days postfertilization, mean mortality of control fry was 98.6%, whereas that for thiamine-injected salmon was 2.1%. This study showed that thiamine injections of prespawning female salmon from Cayuga Lake increased thiamine content of their eggs and prevented the Cayuga syndrome and subsequent mortality of fry. Historically, overfishing, pollution, and building of dams and barriers to spawning migration were suggested as possible causes of the decline of the Atlantic salmon in Lake Ontario and Cayuga Lake. Based on our findings and other reports, we suggest another possible contributing cause of the extirpation of landlocked Atlantic salmon in Lake Ontario and some other inland waters of New York: The entrance of alewives Alosa pseudoharengus containing thiaminase, which induced thiamine deficiency in eggs and increased mortality in fry of the predatory salmon.

Transactions of the American Fisheries Society↗

USGS2018

The North American carbon budget: Past, present, and future

This chapter nicely summarizes and synthesizes the latest scientific information on the North American carbon budget by incorporating terrestrial, anthropogenic, aquatic, and coastal margin CO 2 and CH 4 dynamics. Starting with a historical context, the chapter summarizes current understanding of the magnitudes and trends of carbon stocks and fluxes at the continental scale. It also provides a regional context by stratifying the continent to countries and climate assessment regions and discusses the societal drivers, impacts, and carbon management decisions. Knowledge gaps and research needs are also identified. This chapter is well-written and clearly organized, and provides a broad context beyond individual chapters. Some of the main ways the chapter can be improved include the following: some work is needed on the Key Findings (discussed below); the goals and objectives should be explicitly described; critical content areas missing from the chapter are interannual variability of carbon fluxes and impacts of severe and extended droughts; indicators and feedbacks are missing from Section 2.4; consistent use of units is recommended; numbers with 3-4 significant digits over-state the confidence the reader should have, and all numbers should include uncertainties. And one broader concern to note: This chapter follows the global overview in Chapter 1, where “sinks” are sinks in the cycle perturbed by anthropogenic CO 2 and CH 4 , and the assumption is that globally, the net unperturbed background sinks are zero summed across all reservoirs. Yet in this chapter, “sinks” are net fluxes out of the atmosphere, background + perturbation. For the coastal ocean, inland waters, etc.—where lateral transport is significant—these sources and sinks include background/pre-industrial fluxes that are balanced by fluxes elsewhere. These distinctions must be made clear so that the reader is not given an impression of a greater or lesser sink for anthropogenic CO 2 than is there (e.g., P74, lines 4-6).

Book chapter↗

USGS2008

Utilizing spectral analysis of coastal discharge computed by a numerical model to determine boundary influence

In the present study, a spectral analysis was applied to field data and a numerical model of southeastern Everglades and northeastern Florida Bay that involved computing and comparing the power spectrum of simulated and measured flows at the primary coastal outflow creek. Four dominant power frequencies, corresponding to the S1, S2, M2, and 01 tidal periods, were apparent in the measured outflows. The model seemed to reproduce the magnitudes of the S1 and S2 components better than those of the M2 and 01 components. To determine the cause of the relatively poor representation of the M2 and 01 components, we created a steady-base version of the model by setting the time-varying forcing functions - rainfall, evapotranspiration, wind, and inland and tidal boundary conditions - to averaged values. The steady-base model was then modified to produce multiple simulations with only one time-varying forcing function for each model run. These experimental simulations approximated the individual effects of each forcing function on the system. The spectral analysis of the experimental simulations indicated that temporal fluctuations in rainfall, evapotranspiration, and inland water level and discharge boundaries have negligible effects on coastal creek flow fluctuations with periods of less than 48 hours. The tidal boundary seems to be the only forcing function inducing the M2 and 01 frequency flow fluctuations in the creek. An analytical formulation was developed, relating the errors induced by the tidal water-level gauge resolution to the errors in the simulated discharge fluctuations at the coastal creek. This formulation yielded a discharge-fluctuation error similar in magnitude to the errors observed when comparing the spectrum of the simulated and measured discharge. The dominant source of error in the simulation of discharge fluctuation magnitude is most likely the resolution of the water-level gauges used to create the model boundary.

Journal of Coastal Research↗

USGS2007

Monitoring the storm tide of Hurricane Wilma in southwestern Florida, October 2005

Temporary monitoring stations employing non-vented pressure transducers were used to augment an existing U.S. Geological Survey coastal monitoring network to document the inland water levels related to the storm tide of Hurricane Wilma on the southwestern coast of Florida. On October 22, 2005, an experimental network consisting of 30 temporary stations was deployed over 90 miles of coastline to record the magnitude, extent, and timing of hurricane storm tide and coastal flooding. Sensors were programmed to record time, temperature, and barometric or water pressure. Water pressure was adjusted for changes in barometric pressure and salinity, and then converted to feet of water above the sensor. Elevation surveys using optical levels were conducted to reference storm tide water-level data and high-water marks to the North American Vertical Datum of 1988 (NAVD 88). Storm tide water levels more than 5 feet above NAVD 88 were recorded by sensors at several locations along the southwestern Florida coast. Temporary storm tide monitoring stations used for this effort have demonstrated their value in: (1) furthering the understanding of storm tide by allowing the U.S. Geological Survey to extend the scope of data collection beyond that of existing networks, and (2) serving as backup data collection at existing monitoring stations by utilizing nearby structures that are more likely to survive a major hurricane.

Florida↗