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Biomonitoring of Environmental Status and Trends (BEST) Program: Selected methods for monitoring chemical contaminants and their effects in aquatic ecosystems

This document describes the suite of biological methods of the U.S. Geological Survey- Biomonitoring of Environmental Status and Trends program for monitoring chemical contaminants and their effects on fish. The methods, which were selected by panels of experts, are being field-tested in rivers of the Mississippi River, Columbia River, and Rio Grande basins. General health biomarkers include a health assessment index based on gross observation; histopathological examination of selected organs and tissues; condition factor; and the heptosomatic and splenosomatic indices. Immune system indicators are plasma lysozyme activity and measures of splenic macrophage aggregates. Reproductive biomarkers include plasma concentrations of sex steroid hormones (17β-estradiol and 11-ketotestosterone) and vitellogenin, gonadal histopathology (including reproductive stage and, in females, gonadal atresia), and the gonadosomatic index. Indicators of exposure to polycyclic aromatic and polyhalogenated hydrocarbons are the H4IIE rat hepatoma cell bioassay (performed on solvent extracts of composite fish samples) and hepatic ethoxyresorufin- O -deethylase activity. Stable nitrogen isotope ratios are used to assess the trophic position of the fish and their exposure to sewage and other animal wastes. For each indicator we describe endpoint(s) and methods, and discuss the indicator?s value and limitations for contaminant monitoring and assessment.

Information and Technology Report

Native plant revegetation manual for Denali National Park and Preserve

This manual describes methods to revegetate subarctic sites with native plants. The information is based on 20 years of research and revegetation projects in Denali National Park and Preserve and other Alaskan sites. The manual summarizes information about subarctic ecosystems and discusses using this information to evaluate disturbed sites and plan revegetation projects. Revegetation techniques addressed include promoting natural revegetation, legume and wheatgrass seeding, plant salvage and transplant, bioengineering, containergrown plants, alder seedlings, and willow cuttings. Long-term data for two specific vegetation projects and for each of the 46 native plant species that have been tested or used for revegetation are presented.

Alaska

Strategic plan for the Coordinated Intermountain Restoration Project

In 1982, the Bureau of Land Management’s (BLM) Idaho State Office began the Intermountain Greenstripping and Rehabilitation Research Project (IGRRP), or the “Greenstripping Program,” to investigate plant materials and technologies that can reduce wildfire incidence and improve rehabilitation practices. Rehabilitation is normally applied as a reactive process to wildfires, yet land managers in the Great Basin wish to become proactive by replacing fire-prone invasive annual grasses with native plants. The Coordinated Intermountain Restoration Project (CIRP) evolved from the Greenstripping Program to conduct research studies and provide technical assistance on restoration of native ecosystems on rangelands that are infested with invasive annual grasses or other invasive or noxious weeds. To accomplish this objective, the CIRP will promote the understanding of ecosystem disturbance dynamics as well as evaluate plant materials, site preparation techniques, weed control methods, seeding equipment, management methods, and monitoring techniques for restoration projects. The CIRP will not address the restoration of forested or woodland (juniper [Juniperus]) ecosystems. It will include a component on fuel management to reduce the impacts of wildfires on semiarid rangeland ecosystems where exotic annual grasses provide the fuel. The people who will benefit directly from this research include land managers and users of public and private lands in the northern Great Basin, the Columbia Plateau, and the Snake River Plain. The CIRP will provide an integration framework for a multidisciplinary approach to research with numerous opportunities for input and collaboration. The U.S. Geological Survey will initially dedicate approximately \$1 million over 5 years (about \$200,000 per year) to jump-start this effort. U.S. Geological Survey funds will establish a science advisory board to oversee the project. This board will contain members of Federal research and management agencies within the region. U.S. Geological Survey funds will support (1) continued development of VegSpec, a computer program that is a restoration expert system, (2) research to examine changes in ecosystem processes when native plant-dominated communities shift to communities dominated by exotic annual grasses, and (3) research to address mechanisms for establishing native plants in locations dominated by exotic annual grasses. Through these initial funds, USGS hopes to leverage additional research with other agencies (e.g., BLM’s Great Basin Restoration Initiative or the Native Plant Materials Development Project, which is an interagency program to supply and manage native plant materials for restoration and rehabilitation on Federal lands) or funding organizations (e.g., the U.S. Department of Agriculture’s [USDA] National Research Initiative Competitive Grants Program, or the USDA’s and U.S. Department of the Interior’s [USDOI] Joint Fire Science Program), and to obtain additional research partners (e.g., university or Federal scientists) willing to expand this effort to address all aspects of this strategic plan.

Information and Technology Report

Aquatic synthesis for Voyageurs National Park

Voyageurs National Park (VOYA), which was established in 1975, contains significant aquatic resources with about 50% of its total area of 883 km 2 (341 mi 2 ) consisting of aquatic habitats. In addition to the Park's 30 named lakes, there are numerous wetlands including hundreds of beaver ponds. Due to the Park's size and location in the drainage basin, aquatic resources within the Park are particularly susceptible to activities and developments that occur outside its' boundary. This is particularly true in regard to the water quality and aquatic communities in the four large lakes that comprise 96% of the Park's total lake area of 34,400 ha (133 mi 2 ). Because most Park activities center on the lakes, particularly the large lakes, resource managers need to have knowledge and understanding of VOYA's aquatic resources to effectively preserve, in an unimpaired condition, the ecological processed, biological and cultural diversity, and history of the northwoods, lakecountry border shared with Canada.

Minnesota, Ontario

Geographic Information System Tools for Conservation Planning: User's Manual

Public and private land managers desire better ways to incorporate landscape, species, and habitat relations into their conservation planning processes. We present three tools, developed for the Environmental Systems Research Institute?s ArcView 3.x platform, applicable to many types of wildlife conservation management and planning efforts. These tools provide managers and planners with the ability to rapidly assess landscape attributes and link these attributes with species-habitat information. To use the tools, the user provides a detailed land cover spatial database and develops a matrix to identify species-habitat relations for the landscape of interest. The tools are applicable to any taxa or suite of taxa for which the required data are available. The user also has the ability to interactively make polygon-specific changes to the landscape and re-examine species-habitat relations. The development of these tools has given resource managers the means to evaluate the merits of proposed landscape management scenarios and to choose the scenario that best fits the goals of the managed area.

Information and Technology Report

Population biology of the Florida manatee

The Florida manatee ( Trichechus manatus latirostris ) is a unique element of the U.S. fauna. It is a distinct subspecies of the West Indian manatee (Domning and Hayek 1986) and one of the largest inshore mammals of the continent, reaching weights to 1,650 kg (Rathbun et al. 1990). Annual migratory circuits of some individuals through the intracoastal waterways of the Atlantic Coast are 1,700 km round trips at seasonal travel rates as high as 50km/day (*3 Reid and O'Shea 1989; Reid et al. 1991), resulting in one of the longest remaining intact mammalian migrations in the eastern United States.

Information and Technology Report

Biology of the Rio Grande border region : A bibliography

This bibliography includes 1,913 references to the literature of the Rio Grande (Rio Bravo del Norte). The specific geographic area covered extends 100 km on either side of the river from Elephant Butte Dam in New Mexico to the Gulf of Mexico. The bibliography focuses on the biological literature, divided into major subject areas, and also includes supporting literature from the physical and environmental sciences.

Rio Grande (Rio Bravo del Norte)

Geospatial Technology Strategic Plan 1997-2000

Executive Summary -- Geospatial technology applications have been identified in many U.S. Geological Survey Biological Resources Division (BRD) proposals for grants awarded through internal and partnership programs. Because geospatial data and tools have become more sophisticated, accessible, and easy to use, BRD scientists frequently are using these tools and capabilities to enhance a broad spectrum of research activities. Bruce Babbitt, Secretary of the Interior, has acknowledged--and lauded--the important role of geospatial technology in natural resources management. In his keynote address to more than 5,500 people representing 87 countries at the Environmental Systems Research Institute Annual Conference (May 21, 1996), Secretary Babbitt stated, '. . .GIS [geographic information systems], if properly used, can provide a lot more than sets of data. Used effectively, it can help stakeholders to bring consensus out of conflict. And it can, by providing information, empower the participants to find new solutions to their problems.' This Geospatial Technology Strategic Plan addresses the use and application of geographic information systems, remote sensing, satellite positioning systems, image processing, and telemetry; describes methods of meeting national plans relating to geospatial data development, management, and serving; and provides guidance for sharing expertise and information. Goals are identified along with guidelines that focus on data sharing, training, and technology transfer. To measure success, critical performance indicators are included. The ability of the BRD to use and apply geospatial technology across all disciplines will greatly depend upon its success in transferring the technology to field biologists and researchers. The Geospatial Technology Strategic Planning Development Team coordinated and produced this document in the spirit of this premise. Individual Center and Program managers have the responsibility to implement the Strategic Plan by working within the policy and guidelines stated herein.

Information and Technology Report

Biomonitoring of Environmental Status and Trends (BEST) Program: Field Procedures for Assessing the Exposure of Fish to Environmental Contaminants

This document describes procedures used to collect information, tissues, and fluids for documenting the exposure of fish to environmental contaminants. For the procedures described here, fish are captured (preferably by electrofishing) and held alive until processing (generally <1 h). Fish are weighed, measured, and examined for grossly visible external lesions and pathologies. A blood sample is collected by caudal veinipuncture using a needle and syringe. The fish is subdued and it's abdominal cavity opened. The internal organs are dissected from the fish for examination. The sex of the fish is determined by direct observation of its gonads. The liver is weighed (most species) and cut into small cubes and flash-frozen in cryogenic vials, which are stored and shipped in dry ice or liquid nitrogen. Additional liver cubes plus all grossly visible anomalies are preserved for histopathology. The gonads and spleen are weighed, and samples are preserved for histopathology. The kidneys are examined, and histopathology samples collected. A gill sample is also collected and preserved. All remaining tissues are returned to the carcass, which is wrapped in foil, labeled for chemical analysis, and chilled. Individual fish carcasses are composited by station, species, and gender; frozen; and shipped to the analytical laboratory. Procedures are also described for record keeping; processing blood to obtain serum and plasma; flash-freezing samples; cleaning equipment; and preventing the transport of living organisms among waterways. A list of necessary equipment and supplies is also provided.

Information and Technology Report

Biology and conservation of the common murre in California, Oregon, Washington, and British Columbia: Vol. 1, Natural history and population trends

Over the past 30 years, the common murre ( Uria aalge californica ) has been recognized as a prominent indicator of marine conservation issues in California, Oregon, Washington, and British Columbia, especially regarding oil pollution, certain fisheries, and human disturbance. To assist the effective management of the common murre and the marine environments in which they live, this summary of available information on the biology and regional status of the common murre has been sponsored by the U.S. Fish and Wildlife Service (Division of Migratory Bird Management). In Volume 1 (Chapter 1), the natural history of the common murre is summarized, drawing heavily on breeding studies from the South Farallon Islands, California, plus a host of detailed breeding studies from the North Atlantic Ocean. Population trends of the common murre are summarized in Volume 1 (Chapter 2), focusing on changes in whole-colony counts determined from aerial photographs between the late 1970s and 1995 in California, Oregon and Washington. Historical data and human impacts to murre colonies since the early nineteenth century are also summarized. Volume 2 will summarize population threats, conservation, and management. Information presented in Volume 1 has been obtained and recorded by a large number of researchers and natural historians over two centuries. From the 1960s to 1995, most work in California, Oregon, and Washington was sponsored by the U.S. Fish and Wildlife Service, Minerals Management Service, and California Department of Fish and Game. Important breeding biology studies were conducted at the South Farallon Islands (Farallon National Wildlife Refuge) by the Point Reyes Bird Observatory, in coordination with the U.S. Fish and Wildlife Service (San Francisco Bay National Wildlife Refuge). Colony surveys in California were conducted mainly by the U.S. Fish and Wildlife Service (San Francisco Bay National Wildlife Refuge), U.S. Geological Survey (Western Ecological Research Center, Dixon Field Station), Humboldt State University, and University of California (Santa Cruz). Colony surveys in Oregon and Washington were conducted mainly by the U.S. Fish and Wildlife Service (Oregon Coast National Wildlife Refuge and Washington Maritime National Wildlife Refuges). In British Columbia, most work from the 1960s to 1995 was sponsored and conducted by the Canadian Wildlife Service and Royal British Columbia Museum.

British Columbia, California, Oregon, Washington

Coefficients of conservatism for the vascular flora of the Dakotas and adjacent grasslands

Floristic quality assessment can be used to identity natural areas, to facilitate comparisons among different sites, to provide long-term monitoring of natural area quality, and to evaluate habitat management and restoration efforts. To facilitate the use of floristic quality assessment in North Dakota, South Dakota (excluding the Black Hills), and adjacent grasslands, we developed a species list and assigned coefficients of conservatism (C values; range 0 to 10) to each plant species in the region's flora. The C values we assigned represented our collective knowledge of the patterns of occurrence of each plant species in the Dakotas and our confidence that a particular taxon is natural-area dependent. Because state boundaries usually do not follow ecological boundaries, the C values we assigned should be equally valid in nearby areas with the same vegetation types. Of the 1,584 taxa we recognized in this effort, 275 (17%) were determined to be nonnative to the region. We assigned C values of 4 or higher to 77% of our taxa, and the entire native flora had a mean C value (C) of 6.l. A floristic quality index (FQI) can be calculated to rank sites in order of their floristic quality. By applying the coefficients of conservatism supplied here and calculating C and FQI, an effective means of evaluating the quality of plant communities can be obtained. Additionally, by repeating plant surveys and calculations of C and FQI over time, temporal changes in floristic quality can be identified.

North Dakota, South Dakota

Abstracts from "Coastal Marsh Dieback in the Northern Gulf of Mexico: Extent, Causes, Consequences, and Remedies

In the spring of 2000, scientists discovered a new and unprecedented loss of salt marsh vegetation in coastal Louisiana and other areas along the northern coast of the Gulf of Mexico. This dieback of salt marsh vegetation, sometimes called the brown marsh phenomenon', primarily involved the rapid browning and dieback of smooth cordgrass (Spanina alterniflora). Coastal Louisiana has already undergone huge, historical losses of coastal marsh due to both human-induced and natural factors, and the current overall rate of wetland loss (25-35 sq mi 65-91 SQ KM each year) stands to threaten Louisiana's coastal ecosystem, infrastructure, and economy. On January 11-12, 2001, individuals from Federal and State agencies, universities, and the private sector met at the conference 'Coastal Marsh Dieback in the Northern Gulf of Mexico: Extent, Causes, Consequences, and Remedies' to discuss and share information shout the marsh dieback. Presentations discussed trends in the progress of dieback during the summer of 2000 and in environmental conditions occurring at field study sites, possible causes including drought and Mississippi low flow' conditions, changes in soil conditions (salinity, the bioavailability of metals, pathogens, etc.), the potential for wetland loss that could occur if above and below normality occurs and is sustained over an extended period, advanced techniques for tracking the dieback via aerial photography and remote sensing, linkages of marsh hydrology to the dieback, and mechanisms of modeling dieback and recovery. In addition, presentations were made regarding development of a web site to facilitate information sharing and progress in preparation for requests for proposals based on an emergency appropriation by the U.S. Congress. All findings tended to support the idea that the dieback constituted a continuing environmental emergency and research and natural resource management efforts should be expended accordingly.

Information and Technology Report

Landscape ecology of plague in the American southwest, September 19-20, 2000, Fort Collins, Colorado

During September 19-20, 2000, a workshop titled "Landscape Ecology of Plague in the American Southwest" was held in Fort Collins, Colorado. The workshop was funded by the U.S. Geological Survey (USGS)-Earth Surface Processes Team and sponsored by the USGS National Wildlife Health Center. Forty scientists and natural resource managers and administrators representing 8 federal agencies, 4 state agencies, 6 universities, and other local agencies and nongovernment organizations met to discuss historical and current status of plague in the United States, current activities in plague surveillance, research, and management in wildlife, and research and information needs relative to plague control and management. Eleven individual presentations on plague history, status, and trends; diagnostic technologies; epizootiological studies and observations; and control and management strategies and studies, followed by a panel discussion on the impact of plague on wildlife and ecosystems, led the way to extensive group discussions on important plague-related questions, issues and problems. Workshop attendees participated in identifying important research and information needs relevant to control and management of plague in wildlife, and in the process, established new cooperative and collaborative partnerships and enhanced existing relationships upon which future research and information needs can be met. The proceedings from this workshop are intended to be used by the natural resource managers and researchers from the various participating agencies, research facilities, as well as other stakeholders to aid in the development of future research and information programs and funding initiatives related to both zoonotic and sylvatic plague.

American Southwest