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At least 91 records · Page 5Linked to original sources
USGS2011

Construction of shipping channels in the Detroit River: History and environmental consequences

The Detroit River is one of the most biologically diverse areas in the Great Lakes basin. It has been an important international shipping route since the 1820s and is one of the busiest navigation centers in the United States. Historically, it supported one of the most profitable Lake Whitefish (Coregonus clupeaformis) commercial fisheries in the Great Lakes. Since 1874, the lower Detroit River has been systematically and extensively modified, by construction of deepwater channels, to facilitate commercial shipping. Large-scale dredging, disposal of dredge spoils, and construction of water-level compensating works has greatly altered channel morphology and flow dynamics of the river, disrupting ecological function and fishery productivity of the river and influencing Great Lakes water levels. From 1874 to 1968, major construction projects created 96.5 kilometers (60 miles) of shipping channels, removed over 46,200,000 m 3 of material, covered 4,050 hectares (40.5 square kilometers) of river bottom with dredge spoils, and built 85 hectares of above-waterline compensating works at a total cost of US$283 million. Interest by industries and government agencies to develop the river further for shipping is high and increasing. Historically, as environmental protection agencies were created, construction impacts on natural resources were increasingly addressed during the planning process and, in some cases, assessments of these impacts greatly altered or halted proposed construction projects. Careful planning of future shipping-channel construction and maintenance projects, including a thorough analysis of the expected environmental impacts, could greatly reduce financial costs and ecological damages as compared to past shipping-channel construction projects.

Michigan↗
USGS1999

Assessing biological effects from highway-runoff constituents

Increased emphasis on evaluation of nonpoint-source pollution has intensified the need for techniques that can be used to discern the toxicological effects of complex chemical mixtures. In response, the use of biological assessment techniques is receiving increased regulatory emphasis. When applied with documented habitat assessment and chemical analysis, these techniques can increase our understanding of the influence of environmental contaminants on the biological integrity and ecological function of aquatic communities. The contaminants of greatest potential concern in highway runoff are those that arise from highway construction, maintenance, and use. The major contaminants of interest are deicers; nutrients; metals; petroleum-related organic compounds, such as polycyclic aromatic hydrocarbons (PAHs), benzene, toluene, ethylbenzene, and xylene (BTEX), and methyl tert -butyl ether (MTBE); sediment washed off the road surface; and agricultural chemicals used in highway maintenance. Hundreds, if not thousands, of biological endpoints (measurable responses of living organisms) may be either directly or associatively affected by contaminant exposure. Measurable effects can occur throughout ecosystem processes across the wide range of biological complexity, ranging from responses at the biochemical level to the community level. The challenge to the environmental scientist is to develop an understanding of the relationship of effects at various levels of biological organization in order to determine whether a causal relationship exists between chemical exposure and substantial ecological impairment. This report provides a brief history of the evolution of biological assessment techniques, a description of the major classes of contaminants that are of particular interest in highway runoff, an overview of representative biological assessment techniques, and a discussion of data-quality considerations. Published reports with a focus on the effects of highway runoff on the local ecosystem were reviewed to provide information on (1) the suitability of the existing data for a quantitative national synthesis, (2) the methods available to study the effects of highway runoff on local ecosystems, and (3) the potential for adverse effects on the roadside environment and receiving waters. Although many biological studies have been done, the use of different methods and a general lack of sufficient documentation precludes a quantitative national synthesis on the basis of the existing data. The Federal Highway Administration, the U.S. Environmental Protection Agency, the U.S. Geological Survey, the Intergovernmental Task Force on Monitoring Water Quality, and the National Resources Conservation Service all have developed and documented methods for assessing the effects of contaminants on ecosystems in receiving waters. These published methods can be used to formulate a set of protocols to provide consistent information from highway-runoff studies. Review of the literature indicates (qualitatively) that highway runoff (even from highways with high traffic volume) may not usually be acutely toxic. Tissue analysis and community assessments, however, indicate effects from highway- runoff sediments near discharge points (even from sites near highways with relatively low traffic volumes). At many sites, elevated concentrations of highway-runoff constituents were measured in tissues of species associated with aquatic sediments. Community assessments also indicate decreases in the diversity and productivity of aquatic ecosystems at some sites receiving highway runoff. These results are not definitive, however, and depend on many site-specific criteria that were not sufficiently documented in most of the studies reviewed.

Open-File Report↗
USGS2022

Floodplains and climate change

Floodplains are landscape features that are periodically inundated by water from adjacent rivers (Opperman et al. 2010). Ecologically, functional floodplains are characterized by three primary elements: connectivity, flow regime, and spatial scale. Water quantity flowing over floodplains can vary greatly. Based on a flood’s effects on the floodplain, three flood categories have been defined: floodplain-activation floods, floodplain-maintenance floods, and floodplainresetting floods (Box 1). Several physical parameters determine the types of ecosystems on floodplains and the species they will support; these include temperature, water depth, water velocity, and hydrologic connectivity (Opperman et al. 2010). Natural ecosystems commonly found on floodplains include annual vegetation, forests, seasonal wetlands, and permanent ponds or wetlands (Whipple et al. 2012). Floodplains provide many valuable ecosystem services: attenuation of flood flows which reduces flood risk, filtration of surface water, recreation, fisheries, agriculture, biodiversity, food availability, and groundwater recharge, which contributes to more-sustained and cooler dry-season flows (Opperman et al. 2010). -------------------------------------------------------------------------------------------------------------- Box 1 Floodplain-activation flood A small magnitude flood that occurs relatively frequently and produces characteristic ecological benefits such as food-web productivity and habitat creation for native fish spawning and rearing. Floodplain-maintenance flood A higher magnitude flood that, in addition to providing ecological benefits, results in geomorphic changes including bank erosion and deposition on the floodplain. Floodplain-resetting flood A very high-magnitude flood that occurs rarely and results in extensive geomorphic changes, such as the scouring of floodplain surfaces and changes in channel location due to avulsion. ----------------------------------------------------------------------------

California↗
USGS2016

Sediment budgets, transport, and depositional trends in a large tidal delta

The Sacramento-San Joaquin Delta is the largest delta on the west coast of the United States. It is formed where the confluence of California’s two largest rivers (the Sacramento and San Joaquin) meet the ocean tides and has a significant physical gradient from fluvial to tidal. It is a semidiurnal system (two high and two low tides per day). Today, the Delta is one of the most manipulated in the United States. Once composed of many shallow, meandering and braided dendritic channels and dead-end sloughs and wetlands, it is now a network of leveed canals moving clear water around subsided islands. It historically has supported a biologically diverse tidal wetland complex, of which only 3% remains today (Whipple et al., 2012). It has also witnessed a collapse in the native fish populations. The Delta provides critical habitat for native species, however the hydrology and water quality are complicated by manipulations and diversions to satisfy multiple statewide objectives. Today water managers face co-equal goals of water supply to Californians and maintenance of ecosystem health and function. The Delta is a hub for both a multi-hundred-million dollar agricultural industry and a massive north-to-south water delivery system, supplying the primary source of freshwater to Central Valley farmers and drinking water for two-thirds of California’s population. Large pump facilities support the water demand and draw water from the Delta, further altering circulation patterns and redirecting the net flow toward the export facilities (Monsen et al., 2007). Fluvial sedimentation, along with organic accumulation, creates and sustains the Delta landscape. Hydraulic mining for gold in the watershed during the late 1800s delivered an especially large sediment pulse to the Delta. More recently, from 1955 to the present, a significant sediment decline has been observed that is thought to have been caused mostly by the construction of water storage reservoirs that trap the upstream sediment supply (Wright and Schoellhamer, 2004). Today, one concern is whether the volume of sediment supplied from the upper watershed is sufficient to support ecological function and sustain the Delta landscape and ecosystem in the face of climate change, sea level rise, and proposed restoration associated with the Bay Delta Conservation Plan (http://baydeltaconservationplan.com). Ecosystem health is a management focus and 150,000 acres of restoration is currently proposed, therefore it is of increasingly important to understand the quantity of sediment available for marsh and wetland restoration throughout the Bay Delta Estuary. It is also important to understand the pathways for sediment transport and the sediment budget into each of three Delta regions (figure 1) to guide restoration planning, modeling, and management.

California↗
USGS2016

Will it rise or will it fall? Managing the complex effects of urbanization on base flow

Sustaining natural levels of base flow is critical to maintaining ecological function as stream catchments are urbanized. Research shows a variable response of stream base flow to urbanization, with base flow or water tables rising in some locations, falling in others, or elsewhere remaining constant. The variable baseflow response is due to the array of natural (e.g., physiographic setting and climate) and anthropogenic (e.g., urban development and infrastructure) factors that influence hydrology. Perhaps as a consequence of this complexity, few simple tools exist to assist managers to predict baseflow change in their local urban area. This paper addresses this management need by presenting a decision support tool. The tool considers the natural vulnerability of the landscape, together with aspects of urban development in predicting the likelihood and direction of baseflow change. Where the tool identifies a likely increase or decrease it guides managers toward strategies that can reduce or increase groundwater recharge, respectively. Where the tool finds an equivocal result, it suggests a detailed water balance be performed. The decision support tool is embedded within an adaptive-management framework that encourages managers to define their ecological objectives, assess the vulnerability of their ecological objectives to changes in water table height, and monitor baseflow responses to urbanization. We trial our framework using two very different case studies: Perth, Western Australia, and Baltimore, Maryland, USA. Together, these studies show how pre-development water table height, climate and geology together with aspects of urban infrastructure (e.g., stormwater practices, leaky pipes) interact such that urbanization has overall led to rising base flow (Perth) and falling base flow (Baltimore). Greater consideration of subsurface components of the water cycle will help to protect and restore the ecology of urban freshwaters.

Maryland, Western Australia↗
USGS2009

The Ecology of Parasite-Host Interactions at Montezuma Well National Monument, Arizona - Appreciating the Importance of Parasites

Although parasites play important ecological roles through the direct interactions they have with their hosts, historically that fact has been underappreciated. Today, scientists have a growing appreciation of the scope of such impacts. Parasites have been reported to dominate food webs, alter predator-prey relationships, act as ecosystem engineers, and alter community structure. In spite of this growing awareness in the scientific community, parasites are still often neglected in the consideration of the management and conservation of resources and ecosystems. Given that at least half of the organisms on earth are probably parasitic, it should be evident that the ecological functions of parasites warrant greater attention. In this report, we explore different aspects of parasite-host relationships found at a desert spring pond within Montezuma Well National Monument, Arizona. In three separate but related chapters, we explore interactions between a novel amphipod host and two parasites. First, we identify how host behavior responds to this association and how this association affects interactions with both invertebrate non-host predators and a vertebrate host predator. Second, we look at the human dimension, investigating how human recreation can indirectly affect patterns of disease by altering patterns of vertebrate host space use. Finally - because parasites and diseases are of increasing importance in the management of wildlife species, especially those that are imperiled or of management concern - the third chapter argues that research would benefit from increased attention to the statistical analysis of wildlife disease studies. This report also explores issues of statistical parasitology, providing information that may better inform those designing research projects and analyzing data from studies of wildlife disease. In investigating the nature of parasite-host interactions, the role that relationships play in ecological communities, and how human activities alter these associations, scientists usually make inferences by methods of statistical hypotheses testing. This type of hypothesis testing places additional importance on the analysis and interpretation of parasite-host interactions. We address these ideas in this report, focusing on the following questions: (1) How do two parasites with complex life cycles alter the behavior of a novel amphipod host, and how do host and non-host predators respond to infected amphipod prey? (2) Does human recreation affect spatial patterns of infection in an otherwise natural ecosystem? (3) How is hypothesis-testing applied in studies of wildlife disease? (4) What conclusions can we make about the relative usefulness of these methodologies? and (5) How can the analysis and interpretation of wildlife disease studies be improved? Each chapter of this report contains its own literature-cited section, with tables included in appendixes at the end of the full report.

Open-File Report↗
USGS2020

Generalizing indirect defense and resistance of plants

Indirect defence, the adaptive top‐down control of herbivores by plant traits that enhance predation, is a central component of plant–herbivore interactions. However, the scope of interactions that comprise indirect defence and associated ecological and evolutionary processes has not been clearly defined. We argue that the range of plant traits that mediate indirect defence is much greater than previously thought, and we further organise major concepts surrounding their ecological functioning. Despite the wide range of plant traits and interacting organisms involved, indirect defences show commonalities when grouped. These categories are based on whether indirect defences boost natural enemy abundance via food or shelter resources, or, alternatively, increase natural enemy foraging efficiency via information or alteration of habitat complexity. The benefits of indirect defences to natural enemies should be further explored to establish the conditions in which indirect defence generates a plant–natural enemy mutualism. By considering the broader scope of plant–herbivore–natural enemy interactions that comprise indirect defence, we can better understand plant‐based food webs, as well as the evolutionary processes that have shaped them.

Ecology Letters↗
USGS2006

Use of cotton gin trash to enhance denitrification in restored forested wetlands

Lower Mississippi Valley (LMV) has lost about 80% bottomland hardwood forests, mainly to agriculture. This landscape scale alteration of the LMV resulted in the loss of nitrate (NO3) removal capacity of the valley, contributing to nitrogen (N)-enhanced eutrophication and potentially hypoxia in the northern Gulf of Mexico. Restoration of hardwood forests in the LMV is a highly recommended practice to reduce NO3 load of the Mississippi River. However, restored bottomland forests take decades to develop characteristic ecological functions including denitrifier activity. One way to enhance denitrifier activity in restored wetland forests is to amend the soils with an available carbon (C) source. This research investigated the effects of cotton gin trash (CGT) amendment on denitrification rate and N2O:N2 emission ratio from a restored bottomland forest soils and compared it to those from an adjacent unamended natural forest soils. CGT amendment increased denitrification rates in the restored forest soils to the level of the natural forest soils. N2O:N2 emission ratios from the restored and natural forest soils were highly variable and were not significantly different from each other. These findings suggest that restoration of bottomland hardwood forests in the LMV will require organic carbon amendment to achieve enhanced denitrifier activity for NO3 removal while the restored forest is developing into a mature state over time. ?? 2006 Elsevier B.V. All rights reserved.

Mississippi↗
USGS2020

The role of warm, dry summers and variation in snowpack on phytoplankton dynamics in high-elevation lakes

Abstract Climate change is altering biogeochemical, metabolic, and ecological functions in lakes across the globe. Historically, mountain lakes in temperate regions have been unproductive due to brief ice-free seasons, a snowmelt-driven hydrograph, cold temperatures, and steep topography with low vegetation and soil cover. We tested the relative importance of winter and summer weather, watershed characteristics, and water chemistry as drivers of phytoplankton dynamics. Using boosted regression tree models for 28 mountain lakes in Colorado we examined regional, intra-seasonal, and inter-annual drivers of variability in chlorophyll a as a proxy for lake phytoplankton. Phytoplankton biomass was inversely related to the maximum snow water equivalent (SWE) of the previous winter, as others have found. However, even in years with average SWE, summer precipitation extremes and warming enhanced phytoplankton biomass. Peak seasonal phytoplankton biomass coincided with the warmest water temperatures and lowest nitrogen-to-phosphorus ratios. While links between snowpack, lake temperature, nutrients, and organic matter dynamics are increasingly recognized as critical drivers of change in high elevation lakes, our results highlight the additional influence of summer conditions on lake productivity in response to ongoing changes in climate. Continued changes in the timing, type, and magnitude of precipitation in combination with other global change drivers (e.g., nutrient deposition) will affect production in mountain lakes, potentially shifting these historically oligotrophic lakes toward new ecosystem states. Ultimately, a deeper understanding of these drivers and pattern at multiple scales will allow us to better anticipate ecological consequences of global change.

Colorado↗
USGS2009

The relative importance of disturbance and exotic-plant abundance in California coastal sage scrub

Many ecosystems of conservation concern require some level of disturbance to sustain their species composition and ecological function. However, inappropriate disturbance regimes could favor invasion or expansion of exotic species. In southern California coastal sage scrub (CSS) fire is a natural disturbance, but because of human influence, frequencies may now be unnaturally high. Other anthropogenic disturbances such as grazing also occur in reserve areas. Managers charged with imposing or tolerating fire or other disturbance within their reserves are concerned that habitat quality may be degraded by an increasing abundance of exotic plants. We used vegetation monitoring data from Camp Pendleton, California, USA, to assess the correlation between past disturbances (frequent fire, agriculture, or grazing and mechanical disturbances) and current exotic species abundance in CSS. We found that disturbance history was only modestly related to exotic abundance overall, but fire frequency showed the strongest association. We also examined whether cover and richness of various native plant life forms (woody species, perennial herbs, and annual herbs) were more strongly influenced by disturbance history or by exotic-plant abundance. Native plant responses varied among life forms, but woody species and annual herbs were generally more strongly and negatively associated with exotic abundance than with disturbance. Effective CSS conservation will require developing means to curb the negative impacts of exotic plants, which may abound with or without severe or recent disturbance. Additionally, more focus should be given to understory herbs showing sensitivity to invasion. Though understudied, native herbs comprise the greatest portion of plant diversity in CSS and are critical to preservation of the community as a whole. ?? 2009 by the Ecological Society of America.

Ecological Applications↗
USGS2018

A 3,000‐year lag between the geological and ecological shutdown of Florida's coral reefs

The global‐scale degradation of coral reefs has reached a critical threshold wherein further declines threaten both ecological functionality and the persistence of reef structure. Geological records can provide valuable insights into the long‐term controls on reef development that may be key to solving the modern coral‐reef crisis. Our analyses of new and existing coral‐reef cores from throughout the Florida Keys reef tract (FKRT) revealed significant spatial and temporal variability in reef development during the Holocene. Whereas maximum Holocene reef thickness in the Dry Tortugas was comparable to elsewhere in the western Atlantic, most of Florida's reefs had relatively thin accumulations of Holocene reef framework. During periods of active reef development, average reef accretion rates were similar throughout the FKRT at ~3 m/ky. The spatial variability in reef thickness was instead driven by differences in the duration of reef development. Reef accretion declined significantly from ~6,000 years ago to present, and by ~3,000 years ago, the majority of the FKRT was geologically senescent. Although sea level influenced the development of Florida's reefs, it was not the ultimate driver of reef demise. Instead, we demonstrate that the timing of reef senescence was modulated by subregional hydrographic variability, and hypothesize that climatic cooling was the ultimate cause of reef shutdown. The senescence of the FKRT left the ecosystem balanced at a delicate tipping point at which a veneer of living coral was the only barrier to reef erosion. Modern climate change and other anthropogenic disturbances have now pushed many reefs past that critical threshold and into a novel ecosystem state, in which reef structures built over millennia could soon be lost. The dominant role of climate in the development of the FKRT over timescales of decades to millennia highlights the potential vulnerability of both geological and ecological reef processes to anthropogenic climate change.

Global Change Biology↗
USGS2010

Development of a macrophyte-based index of biotic integrity for Minnesota lakes

Traditional approaches for managing aquatic resources have often failed to account for effects of anthropogenic disturbances on biota that are not directly reflected by chemical and physical proxies of environmental condition. The index of biotic integrity (IBI) is a potentially effective assessment method to integrate ecological, functional, and structural aspects of aquatic systems. A macrophyte-based IBI was developed for Minnesota lakes to assess the ability of aquatic plant communities to indicate environmental condition. The index was developed using quantitative point intercept vegetation surveys for 97 lakes that represent a range of limnological and watershed characteristics. We followed an approach similar to that used in Wisconsin to develop the aquatic macrophyte community index (AMCI). Regional adaptation of the AMCI required the identification of species representative of macrophyte communities in Minnesota. Metrics and scaling methods were also substantially modified to produce a more empirically robust index. Regression analyses indicated that IBI scores reflected statewide differences in lake trophic state (R2 = 0.57, F = 130.3, df = 1, 95, p < 0.005), agricultural (R2 = 0.51, F = 83.0, df = 1, 79, p < 0.005), urban (R2 = 0.22, F = 23.0, df = 1, 79, p < 0.005), and forested land uses (R2 = 0.51, F = 84.7, df = 1, 79, p < 0.005), and county population density (R2 = 0.14, F = 16.6, df = 1, 95, p < 0.005). Variance partitioning analyses using multiple regression models indicated a unique response of the IBI to human-induced stress separate from a response to natural lake characteristics. The IBI was minimally affected by differences in sample point density as indicated by Monte Carlo analyses of reduced sampling effort. Our analysis indicates that a macrophyte IBI calibrated for Minnesota lakes could be useful for identifying differences in environmental condition attributed to human-induced stress gradients. ?? 2010 Elsevier Ltd.

Ecological Indicators↗
USGS2022

Projected impact of sea-level rise and urbanization on mottled duck (Anas fulvigula) habitat along the Gulf Coast of Louisiana and Texas through 2100

Coastal wetlands along the Gulf of Mexico support a wide diversity of wildlife, are important nurseries for sport and commercial fisheries, provide erosion and flood control, and serve many other ecological functions and services. These marshes have been declining in area and degrading at alarming rates since the 1930s. Effective conservation planning is vital to protect these ecosystems, but decision makers often lack knowledge of expected future conditions to strategically target conservation actions. To address this issue, we focus on a species of conservation concern, the mottled duck (<i>Anas fulvigula</i>), that resides year-round in the coastal marshes of the Gulf of Mexico. We used location data collected from radiomarked hen mottled ducks from 2006 to 2011 to create an ensemble model of habitat selection for 2010. We then projected future habitat states using models of sea-level rise and human development. By combining future predictions with our ensemble model, we predict future habitat for mottled ducks through 2100, in 20-year time steps beginning with 2020. Sea-level rise models predicted reductions in coastal marsh habitats and our ensemble model predict corresponding declines in overall habitat quantity and quality for mottled ducks, with the largest rate of habitat loss predicted within the Chenier Plain of Louisiana, USA at 71%. In some areas, particularly the Texas Mid-Coast, USA, future urbanization and human development is expected to reduce the ability of wetland habitat to migrate inland with rising sea-levels. Our results also highlight areas of coastal marsh particularly vulnerable to sea-level rise; and conversely, identify areas most likely to persist into the future that could be targeted for habitat conservation to help mottled ducks persist on the landscape.

Louisiana, Texas↗
USGS2005

Spartina alterniflora genotype influences facilitation and suppression of high marsh species colonizing an early successional salt marsh

Genetically based phenotypic and ecotypic variation in a dominant plant species can influence ecological functions and patterns of recruitment by other species in plant communities. However, the nature and degree of importance of genotypic differences is poorly understood in most systems. The dominant salt marsh species, Spartina alterniflora , is known to induce facilitative and competitive effects in different plant species, and the outcomes of interactions can be affected by nutrients and flooding stress. Clonal genotypes, which maintained their different plant architecture phenotypes throughout 31 months of a field experiment, underwent considerable genet‐specific senescence in their centres over the last 12 months. Different clonal genotypes and different locations (robust edges vs. senescent centres) permitted significantly different levels of light penetration of the canopy (14.8–77.6%), thus establishing spatial heterogeneity for this important environmental factor. S. alterniflora clonal genotype influenced the degree of suppression of the previously dominant Salicornia bigelovii as well as facilitation of recruitment and growth by other plant species. Aster subulatus and Atriplex patula performed better in Spartina clone centres, and experienced reduced growth in Salicornia ‐dominated areas. Four other high marsh species ( Borrichia frutescens , Aster tenuifolius , Iva frutescens and Limonium carolinianum ) colonized only into Spartina clones but not into the Salicornia ‐dominated area. These results suggest that differences in clone size, centre senescence, stem density, height, total stem length and biomass in different genotypes of a dominant marsh plant species can influence recruitment and growth of other plant species. The spatial pattern of habitat heterogeneity is, at least in part, dependent on the genotypic diversity, and possibly the genetic diversity, of such foundation species. We hypothesize that as genotypic diversity increases in populations of a dominant plant species like S. alterniflora , the number and diversity of interactions with other species will increase as well.

Journal of Ecology↗
USGS2025

Evaluating slash piles as habitat for a threatened salamander

Background Amplified wildfire activity in forests of the western United States threatens biodiversity. Fuel treatments can reduce fire severity, modify fire behavior, and restore forest structure and composition, yet impacts of some treatments, including slash piling and burning, on wildlife have received little attention. Piling of residual woody material may create habitable microenvironments for species that require cool, moist microclimates for all biological and ecological functions. One such species, the Sacramento Mountain salamander ( Aneides hardii Taylor), a relictual, endemic salamander narrowly distributed in the mountains of south-central New Mexico, USA, has been found below constructed slash piles within its range, but the characteristics of occupied slash piles and the extent of their occupancy has not yet been quantified. We surveyed for Sacramento Mountain salamanders in slash piles and under logs (cover objects) adjacent to piles and within a surrounding survey plot, and related salamander occupancy to slash pile and cover object characteristics, soil moisture and temperature, and environmental setting. Results We found Sacramento Mountain salamanders in 50% of surveyed slash piles. About 90% of salamanders were found in piles that contained black plastic sheeting, which held accumulations of moist leaf litter and other forest debris. We found no differences in pile characteristics, soil variables, or environmental setting between piles occupied by salamanders and piles in which no salamanders were detected. Salamander density was highest in slash piles, ~ 10% lower under cover objects in the survey area, and ~ 23% lower under cover objects adjacent to slash piles. Conclusions Slash piles serve as habitat for Sacramento Mountain salamanders. Our results suggest that within our study area or similar environments within the species range, any comparable slash pile has the potential to be occupied by salamanders. Species and habitat conservation measures indicated by this study and the timing of historical detections into mid-October include constructing smaller, pyramidal piles that minimize log-on-log or log-ground contact, avoiding the inclusion of black plastic in piles, limiting residence time of piles on the landscape, and initiating pile burning in late October or early November, when most salamanders are likely to have retreated below the ground surface.

New Mexico↗
USGS2017

Direct and indirect controls on organic matter decomposition in four coastal wetland communities along a landscape salinity gradient

Coastal wetlands store more carbon than most ecosystems globally. As sea level rises, changes in flooding and salinity will potentially impact ecological functions, such as organic matter decomposition, that influence carbon storage. However, little is known about the mechanisms that control organic matter loss in coastal wetlands at the landscape scale. As sea level rises, how will the shift from fresh to salt-tolerant plant communities impact organic matter decomposition? Do long-term, plant-mediated, effects of sea-level rise differ from direct effects of elevated salinity and flooding? We identified internal and external factors that regulated indirect and direct pathways of sea-level rise impacts, respectively, along a landscape-scale salinity gradient that incorporated changes in wetland type (fresh, oligohaline, mesohaline and polyhaline marshes). We found that indirect and direct impacts of sea-level rise had opposing effects on organic matter decomposition. Salinity had an indirect effect on litter decomposition that was mediated through litter quality. Despite significant variation in environmental conditions along the landscape gradient, the best predictors of above- and below-ground litter decomposition were internal drivers, initial litter nitrogen content and initial litter lignin content respectively. Litter decay constants were greatest in the oligohaline marsh and declined with increasing salinity, and the fraction of litter remaining (asymptote) was greatest in the mesohaline marsh. In contrast, direct effects of salinity and flooding were positive. External drivers, salinity and flooding, stimulated cellulytic activity, which was highest in the polyhaline marsh. Synthesis . Our results indicate that as sea level rises, initial direct effects of salinity will stimulate decay of labile carbon, but over time as plant communities shift from fresh to polyhaline marsh, litter decay will decline, yielding greater potential for long-term carbon storage. These findings highlight the importance of quantifying carbon loss at multiple temporal scales, not only in coastal wetlands but also in other ecosystems where plant-mediated responses to climate change will have significant impacts on carbon cycling.

Journal of Ecology↗
USGS2017

Fine particle retention within stream storage areas at base flow and in response to a storm event

Fine particles (1–100 µm), including particulate organic carbon (POC) and fine sediment, influence stream ecological functioning because they may contain or have a high affinity to sorb nitrogen and phosphorus. These particles are immobilized within stream storage areas, especially hyporheic sediments and benthic biofilms. However, fine particles are also known to remobilize under all flow conditions. This combination of downstream transport and transient retention, influenced by stream geomorphology, controls the distribution of residence times over which fine particles influence stream ecosystems. The main objective of this study was to quantify immobilization and remobilization rates of fine particles in a third-order sand-and-gravel bed stream (Difficult Run, Virginia, USA) within different geomorphic units of the stream (i.e., pool, lateral cavity, and thalweg). During our field injection experiment, a thunderstorm-driven spate allowed us to observe fine particle dynamics during both base flow and in response to increased flow. Solute and fine particles were measured within stream surface waters, pore waters, sediment cores, and biofilms on cobbles. Measurements were taken at four different subsurface locations with varying geomorphology and at multiple depths. Approximately 68% of injected fine particles were retained during base flow until the onset of the spate. Retention was evident even after the spate, with 15.4% of the fine particles deposited during base flow still retained within benthic biofilms on cobbles and 14.9% within hyporheic sediment after the spate. Thus, through the combination of short-term remobilization and long-term retention, fine particles can serve as sources of carbon and nutrients to downstream ecosystems over a range of time scales.

Virginia↗
USGS2025

Blueprints for riverine cod nest boxes draw from multiple design considerations

Designing aquatic nest boxes is rarely afforded detailed scientific account. Here we provide some historical context for nest boxes used in production of large-bodied fishes of the Australian freshwater cod genus Maccullochella . Our experience with eastern freshwater cod is used as a case study to: (a) convey aspects of the complexity of the nest box design process and to (b) demonstrate the importance of visual literacy in project communication across the variety of contributors to the eco-design process. Specifically, we describe a new, two-variant, triangular nest box design for application in rivers and modifications to a standard stainless steel nest box for hatchery-pond-based spawning of eastern freshwater cod M. ikei . We designed the boxes to test adult preference for single versus double entrance/exits to cavities in hatchery and field environments. An important consideration specific to hatchery production is harvesting demersal, adhesive eggs prior to hatching to minimise fungal infection of eggs and physical loss of larvae, in addition to providing critical first feeding of larvae. In contrast, field nest box design incorporated multiple factors and associated trade-offs related to both internal and external design, ranging from manufacturer capability, material types, cost, transportability, hydrological performance, biodegradability, retrievability, as well as biological and ecological function. Only preliminary findings from field nest box deployments are provided here, and we focus primarily on elements of visual language in the form of conceptual drawings, sketches and final schematics which have been central to our process. We emphasise the benefit of harnessing input from multiple fields of expertise and documenting and testing designs of nest boxes for cavity nesting fishes, under both controlled hatchery and more complex field conditions.

Aquaculture, Fish and Fisheries↗