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USGS2025

White‐tailed deer habitat use and implications for chronic wasting disease transmission

Animal space use, activity patterns, and habitat selection—and heterogeneity in these patterns—have important implications for where and when infectious diseases are transmitted. White-tailed deer ( Odocoileus virginianus ) are habitat generalists, with a high degree of heterogeneity in their movement ecology based on sex, age, season, and region. These heterogeneities have important implications for the transmission and management of chronic wasting disease (CWD), which is a deadly prion disease transmitted both directly and indirectly through the environment. As such, favored deer habitats may promote direct interactions between conspecifics or indirect spatial overlap and subsequent environmental transmission. However, little is known about how individual animal space use translates to actual spatial overlap between individuals, leaving uncertainty in how habitat shapes the risk of direct or environmental CWD transmission. In this study, we evaluated seasonal activity patterns, home ranges, and habitat selection for 596 white-tailed deer in southwest Wisconsin, USA, from 2017-2022. We also estimated seasonal encounter distributions—regions where a pair of deer were most likely to encounter each other—for all pairs of deer putatively in different social groups (between-group) in our study, and quantified seasonal variation in the habitat composition of these areas. We found that deer selection for crops, pasture, or grasslands was generally low, relative to forest, but was highest in the post-fawning (summer) and non-breeding (winter) seasons. We observed similar patterns for the habitat composition of encounter distributions, suggesting that crops, pasture, and grasslands may be attractive resources that facilitate between-group transmission. Site fidelity between years was generally high; combined with small female home ranges in the fawning season, this implies that females likely re-use the same small, high-quality fawning habitats from year to year. We found that attraction toward between-group individuals was low during the post-fawning season but high during the breeding (fall) and non-breeding seasons. These results suggest that space use and habitat selection could shape the risk of environmental transmission in the fawning and post-fawning seasons, social selection could favor direct transmission risk in the breeding season, and combined social and habitat selection may shape risk of both direct and environmental transmission during the non-breeding season. We provide a detailed picture of the physiological and social drivers of deer movement through the year, with implications for CWD transmission and management.

Iowa, Wisconsin↗

USGS2012

Population ecology of breeding Pacific common eiders on the Yukon-Kuskokwim Delta, Alaska

Populations of Pacific common eiders (Somateria mollissima v-nigrum) on the Yukon-Kuskokwim Delta (YKD) in western Alaska declined by 50–90% from 1957 to 1992 and then stabilized at reduced numbers from the early 1990s to the present. We investigated the underlying processes affecting their population dynamics by collection and analysis of demographic data from Pacific common eiders at 3 sites on the YKD (1991–2004) for 29 site-years. We examined variation in components of reproduction, tested hypotheses about the influence of specific ecological factors on life-history variables, and investigated their relative contributions to local population dynamics. Reproductive output was low and variable, both within and among individuals, whereas apparent survival of adult females was high and relatively invariant (0.89 ± 0.005). All reproductive parameters varied across study sites and years. Clutch initiation dates ranged from 4 May to 28 June, with peak (modal) initiation occurring on 26 May. Females at an island study site consistently initiated clutches 3–5 days earlier in each year than those on 2 mainland sites. Population variance in nest initiation date was negatively related to the peak, suggesting increased synchrony in years of delayed initiation. On average, total clutch size (laid) ranged from 4.8 to 6.6 eggs, and declined with date of nest initiation. After accounting for partial predation and non-viability of eggs, average clutch size at hatch ranged from 2.0 to 5.8 eggs. Within seasons, daily survival probability (DSP) of nests was lowest during egg-laying and late-initiation dates. Estimated nest survival varied considerably across sites and years (mean = 0.55, range: 0.06–0.92), but process variance in nest survival was relatively low (0.02, CI: 0.01–0.05), indicating that most variance was likely attributed to sampling error. We found evidence that observer effects may have reduced overall nest survival by 0.0–0.36 across site-years. Study sites with lower sample sizes and more frequent visitations appeared to experience greater observer effects. In general, Pacific common eiders exhibited high spatio-temporal variance in reproductive components. Larger clutch sizes and high nest survival at early initiation dates suggested directional selection favoring early nesting. However, stochastic environmental effects may have precluded response to this apparent selection pressure. Our results suggest that females breeding early in the season have the greatest reproductive value, as these birds lay the largest clutches and have the highest probability of successfully hatching. We developed stochastic, stage-based, matrix population models that incorporated observed spatio-temporal (process) variance and co-variation in vital rates, and projected the stable stage distribution () and population growth rate (λ). We used perturbation analyses to examine the relative influence of changes in vital rates on λ and variance decomposition to assess the proportion of variation in λ explained by process variation in each vital rate. In addition to matrix-based λ, we estimated λ using capture–recapture approaches, and log-linear regression. We found the stable age distribution for Pacific common eiders was weighted heavily towards experienced adult females (≥4 yr of age), and all calculations of λ indicated that the YKD population was stable to slightly increasing (λmatrix = 1.02, CI: 1.00–1.04); λreverse-capture–recapture = 1.05, CI: 0.99–1.11; λlog-linear = 1.04, CI: 0.98–1.10). Perturbation analyses suggested the population would respond most dramatically to changes in adult female survival (relative influence of adult survival was 1.5 times that of fecundity), whereas retrospective variation in λ was primarily explained by fecundity parameters (60%), particularly duckling survival (42%). Among components of fecundity, sensitivities were highest for duckling survival, suggesti

Alaska↗

USGS2014

Habitat prioritization across large landscapes, multiple seasons, and novel areas: an example using greater sage-grouse in Wyoming

Animal habitat selection is an important and expansive area of research in ecology. In particular, the study of habitat selection is critical in habitat prioritization efforts for species of conservation concern. Landscape planning for species is happening at ever-increasing extents because of the appreciation for the role of landscape-scale patterns in species persistence coupled to improved datasets for species and habitats, and the expanding and intensifying footprint of human land uses on the landscape. We present a large-scale collaborative effort to develop habitat selection models across large landscapes and multiple seasons for prioritizing habitat for a species of conservation concern. Greater sage-grouse ( Centrocercus urophasianus , hereafter sage-grouse) occur in western semi-arid landscapes in North America. Range-wide population declines of this species have been documented, and it is currently considered as “warranted but precluded” from listing under the United States Endangered Species Act. Wyoming is predicted to remain a stronghold for sage-grouse populations and contains approximately 37% of remaining birds. We compiled location data from 14 unique radiotelemetry studies (data collected 1994–2010) and habitat data from high-quality, biologically relevant, geographic information system (GIS) layers across Wyoming. We developed habitat selection models for greater sage-grouse across Wyoming for 3 distinct life stages: 1) nesting, 2) summer, and 3) winter. We developed patch and landscape models across 4 extents, producing statewide and regional (southwest, central, northeast) models for Wyoming. Habitat selection varied among regions and seasons, yet preferred habitat attributes generally matched the extensive literature on sage-grouse seasonal habitat requirements. Across seasons and regions, birds preferred areas with greater percentage sagebrush cover and avoided paved roads, agriculture, and forested areas. Birds consistently preferred areas with higher precipitation in the summer and avoided rugged terrain in the winter. Selection for sagebrush cover varied regionally with stronger selection in the Northeast region, likely because of limited availability, whereas avoidance of paved roads was fairly consistent across regions. We chose resource selection function (RSF) thresholds for each model set (seasonal × regional combination) that delineated important seasonal habitats for sage-grouse. Each model set showed good validation and discriminatory capabilities within study-site boundaries. We applied the nesting-season models to a novel area not included in model development. The percentage of independent nest locations that fell directly within identified important habitat was not overly impressive in the novel area (49%); however, including a 500-m buffer around important habitat captured 98% of independent nest locations within the novel area. We also used leks and associated peak male counts as a proxy for nesting habitat outside of the study sites used to develop the models. A 1.5-km buffer around the important nesting habitat boundaries included 77% of males counted at leks in Wyoming outside of the study sites. Data were not available to quantitatively test the performance of the summer and winter models outside our study sites. The collection of models presented here represents large-scale resource-management planning tools that are a significant advancement to previous tools in terms of spatial and temporal resolution.

Wyoming↗

USGS2012

Short-term impacts of a 4-lane highway on black bears in eastern North Carolina

Among numerous anthropogenic impacts on terrestrial landscapes, expanding transportation networks represent one of the primary challenges to wildlife conservation worldwide. Larger mammals may be particularly vulnerable because of typically low densities, low reproductive rates, and extensive movements. Although numerous studies have been conducted to document impacts of road networks on wildlife, inference has been limited because of experimental design limitations. During the last decade, the North Carolina Department of Transportation (NCDOT) rerouted and upgraded sections of United States Highway 64 between Raleigh and the Outer Banks to a 4-lane, divided highway. A new route was selected for a 24.1-km section in Washington County. The new section of highway included 3 wildlife underpasses with adjacent wildlife fencing to mitigate the effects of the highway on wildlife, particularly American black bears (Ursus americanus). We assessed the short-term impacts of the new highway on spatial ecology, population size, survival, occupancy, and gene flow of black bears. We tested our research hypotheses using a before-after control-impact (BACI) study design. We collected data during 2000–2001 (preconstruction phase) and 2006–2007 (postconstruction phase) in the highway project area and a nearby control area (each approx. 11,000 ha), resulting in 4 groups of data (i.e., pre- or postconstruction study phase, treatment or control area). We captured and radiocollared 57 bears and collected 5,775 hourly locations and 4,998 daily locations. Using mixed-model analysis of variance and logistic regression, we detected no differences in home ranges, movement characteristics, proximity to the highway alignment, or habitat use between the 2 study phases, although minimum detectable effect sizes were large for several tests. However, after completion of the new highway, bears on the treatment area became less inactive in morning, when highway traffic was low, compared with bears on the control area (F 1, 43 = 6.05, P = 0.018). We used DNA from hair samples to determine if population size and site occupancy decreased following highway construction. For each study phase, we collected black bear hair from 70 hair snares on each study area during 7 weekly sampling periods and generated genotypes using 10 microsatellite loci. We used the multilocus genotypes to obtain capture histories for 226 different bears and used capture-mark-recapture models to estimate population size. Model-averaged estimates of population size decreased on the treatment area from 87.7 bears before construction to 31.6 bears after construction (64% reduction) and on the control area from 163.6 bears to 108.2 bears (34% reduction). Permutation procedures indicated this reduction was proportionally greater for the treatment area (P = 0.086). We also applied a spatially explicit capture-recapture technique to test our research hypothesis. The model with the most support indicated a greater change in density on the treatment area (69% reduction) compared with the control area (24% reduction). We did not observe a treatment effect based on survival of radiocollared bears. We used bear visits to hair snares as detections in multi-season occupancy models and found that occupancy decreased more on the treatment area (preconstruction: Ψ = 0.84; postconstruction: Ψ = 0.44; 48% decline) than the control area (preconstruction: Ψ = 0.91; postconstruction: Ψ = 0.81; 11% decline), primarily as a function of a greater probability of site extinctions (ε) on the treatment area (ε = 0.57) than the control area (ε = 0.17). Finally, individual- and population-based analyses of contemporary gene flow did not indicate the highway was a barrier to movements. Black bear use of the 3 wildlife underpasses was infrequent (17 verified crossings based on remote cameras, track surveys, and telemetry). Only 4 of 8 bears with home ranges near the highway were documented crossing the highway (n = 36 crossings), of which 2 were killed in vehicle collisions. Six additional bears were killed in vehicle collisions from May 2007 to November 2008, after we completed field work. Harvest data indicated that hunting mortality alone could explain the population decline on the control area. On the treatment area, however, hunting mortality only accounted for an approximately 40% population decline; the additional 30% decline we observed likely was caused by other mortality. We speculate vehicle collisions were primarily responsible. We conclude that impacts of the new highway on resident black bears occurred at the population level, rather than the individual or genetic level, but that the impact was smaller than harvest mortality. Increased activity by remaining bears when traffic volumes were low indicated behavioral plasticity. Bear use of the underpasses seemed sufficient to maintain gene flow between areas north and south of the new highway. Effectiveness of wildlife underpasses to reduce mortality of black bears may be enhanced if mitigation includes continuous fencing between crossing structures. For small, isolated populations of threatened or endangered large mammals, the potential demographic impacts of highways are an essential consideration in the transportation planning process. Control of mortality factors and maintaining demographic connectivity are particularly important.

California↗

USGS2014

Spring migration ecology of the mid-continent sandhill crane population with an emphasis on use of the Central Platte River Valley, Nebraska

We conducted a 10-year study (1998–2007) of the Mid-Continent Population (MCP) of sandhill cranes (Grus canadensis) to identify spring-migration corridors, locations of major stopovers, and migration chronology by crane breeding affiliation (western Alaska–Siberia [WA–S], northern Canada–Nunavut [NC–N], west-central Canada–Alaska [WC–A], and east-central Canada–Minnesota [EC–M]). In the Central Platte River Valley (CPRV) of Nebraska, we evaluated factors influencing staging chronology, food habits, fat storage, and habitat use of sandhill cranes. We compared our findings to results from the Platte River Ecology Study conducted during 1978–1980. We determined spring migration corridors used by the breeding affiliations (designated subpopulations for management purposes) by monitoring 169 cranes marked with platform transmitter terminals (PTTs). We also marked and monitored 456 cranes in the CPRV with very high frequency (VHF) transmitters to evaluate length and pattern of stay, habitat use, and movements. An estimated 42% and 58% of cranes staging in the CPRV were greater sandhill cranes (G. c. tabida) and lesser sandhill cranes (G. c. canadensis), and they stayed for an average of 20 and 25 days (2000–2007), respectively. Cranes from the WA–S, NC–N, WC–A, and EC–M affiliations spent an average of 72, 77, 52, and 53 days, respectively, in spring migration of which 28, 23, 24, and 18 days occurred in the CPRV. The majority of the WA–S subpopulation settled in the CPRV apparently because of inadequate habitat to support more birds upstream, although WA–S cranes accounted for >90% of birds staging in the North Platte River Valley. Crane staging duration in the CPRV was negatively correlated with arrival dates; 92% of cranes stayed >7 days. A program of annual mechanical removal of mature stands of woody growth and seedlings that began in the early 1980s primarily in the main channel of the Platte River has allowed distribution of crane roosts to remain relatively stable over the past 2 decades. Most cranes returned to nocturnal roost sites used in previous years. Corn residues dominated the diet of sandhill cranes in the CPRV, as in the 1970s, despite a marked decline in standing crop of corn residues. Only 14% (10 of 74) of PTT-marked migrant cranes stayed at stopovers for ≥5 days before arriving in the CPRV, which limited the contribution of sites south of the CPRV for fat accumulation needed for migration and reproduction. Body masses of cranes (after adjusting for body size [an index of fat]) at arrival in the CPRV varied widely among years (1998–2006), indicating the importance of maintaining productive habitats on the wintering grounds to condition cranes for migration and reproduction. Average rates of fat gain by adult females while in the CPRV remained similar from 1978–1979 to 1998–1999 but declined among males. Distances cranes flew to feeding grounds in the CPRV increased as the percentage of cropland planted to soybeans increased and as density of cranes on nocturnal roosts increased. These results suggest that as habitats of limited or no value to cranes increase on the landscape, more flight time and higher maintenance costs may reduce fat storage. An estimated 40% of diurnal use occurred north of Interstate 80 (I-80) where ≤5% of lands dedicated to crane conservation are located. Seventy-four and 40% of PTT-marked EC–M and WC–A cranes had spring migrations that included staging in eastern South Dakota for an average of 11 and 10 days, respectively. Cranes of the NC–N, WA–S, and WC–A subpopulations staged an average of 25, 17, and 12 days in central and western Saskatchewan/eastern Alberta. Females in these affiliations increased their fat reserves after leaving Nebraska by an estimated 450, 451, and 452 g, respectively, underscoring the key role of these staging areas in preparing the 3 subpopulations for reproduction. After departing Nebraska, MCP cranes roosted primarily in basin wetlands. Most of these wetlands are in private ownership and lack adequate protection, emphasizing the need for effective laws and policies to ensure their long-term protection. The continued success of the current management goal of maintaining the MCP at approximately its current size and providing diverse recreational opportunities over a wide area of midcontinent and western North America is predicated on the ability of MCP cranes to continue to store large fat reserves in the CPRV in advance of breeding. For the CPRV to remain a key fat storage site, active channel maintenance (e.g., clearing of woody vegetation) likely will need to continue, along with establishing minimum stream flows. These actions would help ensure nocturnal roosting habitat remains sufficiently dispersed to provide cranes with daily intake of high-energy food adequate for major fat storage and limit risk of high mortality from storms and disease. Published 2014. This article is a U.S. Government work and is in the public domain in the USA.

Nebraska↗

USGS2005

Ecology of Florida black bears in the Okefenokee-Osceola ecosystem

The population status of the Florida black bear ( Ursus americanus floridanus ) is problematic within many portions of its range and its potential listing as a federally threatened species has been the subject of legal debate. We studied Florida black bears in 2 areas in the Okefenokee-Osceola ecosystem in southeast Georgia (i.e.,Okefenokee) and north Florida (i.e., Osceola) from 1995 to 1999 to evaluate relationships between population characteristics, habitat conditions, and human activities. Bears in Okefenokee were hunted and those in Osceola were not. We captured 205 different black bears (124M:81F) 345 times from June 1995 to September 1998. We obtained 13,573 radiolocations from 87 (16M:71F) individual bears during the study. In Okefenokee, black gum ( Nyssa sylvatica ) and saw palmetto ( Serenoa repens ) fruits were the most important foods for bears based on scat analysis. In Osceola, corn from white-tailed deer ( Odocoileus virginianus ) feeders was the most stable food source but saw palmetto was heavily used when available. Corn from deer feeders was not available in Okefenokee. Adult bears in Osceola were 29% heavier than those in Okefenokee ( t 82 = 3.55, P <0.001). The mean annual home-range size for Osceola females ( x̄ =30.3 km 2 ± 4.0 [SE], n =53) varied little seasonally or annually and was almost half that of Okefenokee females (55.9 km 2 ± 6.9, n = 69; Z = –2.47, P = 0.014). In contrast, radiocollared females in Okefenokee expanded their home ranges during years of poor black gum production. That expansion was most apparent between autumn 1998 and 1999, when mean home-range size for Okefenokee females increased from 14.5 km 2 to 78.4 km 2 , respectively, and included a larger proportion of upland areas open to sport hunting. As a result, 5 females were harvested in the Okefenokee study area during the 1999 bear hunting season compared with only 7 harvested from 1996 to 1998. Home ranges of adult female bears were located in areas with disproportionately high loblolly bay ( Gordonia lasianthus ) and gum-bay-cypress ( Taxodium spp.) vegetation associations in Okefenokee and gum-bay-cypress associations in Osceola. The pine vegetation association ranked lower than most other associations within the home ranges of bears in both study areas even though much of the summer and autumn diets of bears included food items found almost exclusively in pine. Sixteen mortalities of radiocollared bears were documented in Okefenokee; hunting accounted for 11 (68.8%) of these deaths. The annual survival rate of radiocollared males in Okefenokee was 0.71 (95% CI = 0.53–0.88) whereas survival of females in Okefenokee was higher ( Z =18.87, P <0.001) at 0.89 (95% CI = 0.83–0.95). The survival rate for females in Osceola was 0.97 (95% CI = 0.92–1.00). Overall, 67 bears (51M:16F) were killed by hunters in the Okefenokee study area from 1995 to 1999. Based on all radiocollared bears in Okefenokee, many of which resided within areas closed to hunting, we estimated an annual harvest rate of 0.22 (95% CI = 0.03–0.37) for males and 0.07 (95% CI = 0.01–0.12) for females. When we excluded those bears that were not in areas open to hunting, however, the annual harvest rate rose to 0.37 (95% CI = 0.07–0.58) for males and 0.39 (95% CI = 0.09–0.58) for females. Following a black gum shortage in autumn 1995, only 1 of 15 radiocollared females in Okefenokee produced cubs in winter 1996. That low reproductive rate was in contrast to winter 1997, which followed heavy black gum production, when 21 of 22 radiocollared females produced cubs. Reproductive output was more consistent in the Osceola study area, with 46 cubs being produced from 8, 5, and 9 litters in 1997, 1998, and 1999, respectively. To estimate population size, we maintained 88 and 94 barbed-wire hair traps during 1999 in the Okefenokee and Osceola study areas, respectively. Using DNA collected at the hair traps, mark–recapture models produced estimates of 71 bears (95% CI = 59–91) in Okefenokee and 44 bears (95% CI = 40–57) in the Osceola study area during 1999. The estimated densities in the Okefenokee and Osceola study areas were 0.12 and 0.14 bears/km 2 , respectively. Alternative density estimates based on the amount of time bears spent within study area boundaries were similar (0.11 and 0.14 bears/km 2 on Okefenokee and Osceola, respectively). We used a population model to estimate the effect of harvest in the Okefenokee bear population. Excluding harvest, bears at Osceola experienced higher average annual population growth (λ = 1.184 ± 0.002) than those at Okefenokee (1.064 ± 0.002; t 18 = 3.93, P = 0.001), most likely due to protection from hunting and higher recruitment. Including the effects of emigration and immigration, we estimated an average annual sustainable harvest at Okefenokee of approximately 9 bears (12.6%), which was slightly less than the average 1995–1999 annual harvest of 9.4. That level of hunting in Okefenokee is sustainable but likely represents the highest exploitation rate in the region. Our mark–recapture data from Osceola suggest a high dispersal rate by subadult bears, and our population modeling data support this hypothesis; we documented bears in Okefenokee that originated from Osceola but not the reverse. We speculate that bears from the interior of the Okefenokee National Wildlife Refuge (ONWR), and to some extent northern Florida, served as a source to the population sink caused by hunting mortality in Okefenokee and in the surrounding Georgia counties. Corn from deer feeders was the most probable reason for smaller home-range sizes and greater body masses and reproductive output at Osceola. Changes in management to eliminate or reduce baiting for deer with corn would negatively affect the Osceola bear population. On Okefenokee, sporadic black gum and palmetto production influenced harvest rates and cub production and, thus, governed bear population dynamics. The U.S. Fish and Wildlife Service (USFWS) concluded in 1998 that listing the Florida black bear as threatened under the Endangered Species Act of 1973 was not warranted. That decision was largely based on the stability and protection afforded to a few subpopulations within the range of the subspecies, which includes the Okefenokee-Osceola subpopulation; our results support that conclusion. However, we suggest that metapopulation processes among the various subpopulations be given greater consideration, with the ultimate goal of managing the sub-species as a unit rather than as an assemblage of independent components. Our study illustrates the importance of travel corridors for maintaining metapopulation processes.

Florida, Georgia↗