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Challenge theme 2: assuring water availability and quality in the 21st century: Chapter 4 in United States-Mexican Borderlands: Facing tomorrow's challenges through USGS science

Along the United States–Mexican border, the health of communities, economies, and ecosystems is inextricably intertwined with the availability and quality of water, but effective water management in the Borderlands is complicated. Water users compete for resources, and their needs are increasing. Managers are faced with issues such as finding a balance between agriculture and rapidly growing cities or maintaining public supplies while ensuring sufficient resources for aquatic ecosystems. In addition to human factors, the dry climate of the Borderlands, as compared to more temperate regions, also increases the challenge of balancing water supplies between humans and ecosystems. Warmer, drier, and more variable conditions across the southwestern United States—the projected results of climate change (Seager and others, 2007)—would further stress water supplies.

United States-Mexico Borderlands

Delaware River Basin

During the past 25 years, industry and government have made large financial investments in manufacturing, processing, and wastewater-treatment facilities to reduce the amount of contaminants being discharged. Although these investments have led to improved water quality across the Nation, concerns about the effects of nutrients, toxins, and pathogens on human health and that of ecological communities remain. To address the need for consistent and scientifically sound information for managing the Nation's water resources, the U.S. Geological Survey began the National Water-Quality Assessment (NAWQA) program in 1991. This program is unique in that it integrates surface- and ground-water-quality monitoring with the study of aquatic ecosystems. The goals of the NAWQA program are to (1) describe current water-quality conditions for a large part of the Nation's freshwater streams and aquifers (water-bearing sediments and rocks), (2) describe how water quality is changing over time, and (3) increase our understanding of the natural and human factors that affect water quality (Leahy and others, 1990, Gilliom and others, 1995). Assessing the quality of water in every location of the Nation would not be practical. Therefore, NAWQA investigations are conducted within 59 selected areas called study units (fig. 1). These study units encompass important river and aquifer systems in the United States and represent the diverse geographic, waterresource, land-use, and water-use characteristics of the Nation. The Delaware River Basin is one of 15 study units in which work began in 1996. Water-quality sampling in the study unit will begin in 1999. This fact sheet provides a brief overview of the NAWQA program, describes the Delaware River Basin study unit, identifies the major water-quality issues in the basin, and documents the plan of study that will be followed during the study-unit investigation.

Delaware, Maryland, New Jersey, New York, Pennsylv

Small creatures, big challenge: A review of current knowledge and assessment of research needs to inform water withdrawal management for the Duck River's freshwater mussel fauna

The Duck River is a remarkable national resource, boasting outstanding biodiversity (Ahlstedt et al. 2017). It contains 151 fish species, over 60 mussel species, and 22 snail species, many of which are federally listed (Etnier and Starnes 1993; Johnson et al. 2013; Ahlstedt et al. 2017; Womble and Rosenberger 2025a). The Duck River watershed is at a pivotal time in its management and ecological history due to significant growth in human population and economic activity. The consequent increase in surface water demand presents challenges for sustainable water resource management. The Tennessee Department of Environment and Conservation (TDEC) has permitted or proposed to permit eight water utilities to withdraw over 77 million gallons per day (mgd) from the Duck River, representing > 40% increase from previously permitted amounts (USFWS 2025). On November 20, 2024, Tennessee Governor Bill Lee signed Executive Order No 108 to ensure long-term stability of the Duck River watershed through balancing economic growth, water resource management, and environmental conservation. Some primary components of this plan are the creation of a Comprehensive Regional Drought Management Plan, the development of a Habitat Conservation Plan, and the establishment of the Duck River Watershed Planning Partnership (DRWPP). Although the planning partnership is not focused on a sole aspect of the Duck River, but the watershed as a whole, the mussel assemblages of the Duck River have been a particular focus due to their importance in providing ecosystem services, sensitivity to water quality, conservation status, and sensitivity to periodic drought conditions in this system. With multiple state and federal agencies involved in managing the Duck River’s unique water resources, a focused review on how future water management could affect the freshwater mussel communities in the Duck River will contribute to this process. Our objectives of this review are to: 1. Review the effects of changing flow regimes on mussels, with emphasis on the effect of droughts/low flows, highlighting key processes/factors affecting mussels. 2. Highlight critical data gaps that could allow future, evidence-based water management decisions in this system. 3. Propose research topics to address critical data gaps and enable evidence-based water management decisions that consider the needs of freshwater mussels. Freshwater mussels are a critical component of riverine ecosystems, providing ecosystem services including water filtration, nutrient cycling, and habitat provision (Vaughn et al. 2004; Haag 2012) that benefit human communities. Environmental flows, also referred to as ecological or e-flows, refer to the quantity, timing, and quality of water flows necessary to maintain the ecological health of rivers, wetlands, and other aquatic ecosystems (Acreman and Dunbar 2004; Acreman 2016). For freshwater mussels, environmental flows include maintaining a flow regime and associated water quality regimes that are favorable for both juveniles and adults while also seasonally supporting host fish and the survival of settling glochidia (i.e., larval mussels) in suitable environments (Gates et al. 2015). Freshwater mussels are adapted to the natural flow regime of their native streams, including seasonal variability in flows. As sedentary filter feeders, mussels require adequate water flow to provide oxygen and food (Allen and Vaughn 2009); however, they also require periods of low flow to increase access to fish hosts and to ensure juveniles are not displaced (Gates et al 2015). Mussels are sensitive to water quality conditions, including pollutants, sedimentation, and artificial alterations of temperature and pH (Strayer and Malcom 2012). Mussel community characteristics, including presence, abundance, and species richness, generally increase with stream size (e.g., stream order); however, responses to changes in flow conditions are often species-specific, and the magnitude and timing of extreme flow conditions have more predictive power for mussel community response than general changes in flow (Lopez and Vaughn 2021). Complex hydraulic variables, such as relative shear stress and Reynolds number, can be strong predictors of mussel community responses because they combine simple hydraulic variables (e.g., velocity, depth) with stream channel characteristics, such as substrate composition and dynamics. Droughts directly and indirectly affect mussels by influencing their physiology, behavior, reproduction, and ecosystem roles. Mass mussel die-offs during droughts and low water conditions are widely documented (Vaughn et al. 2015; Sousa et al. 2018; Dubose et al. 2019). Droughts can also lead to a shift in mussel community composition, with drought-tolerant species becoming more dominant while more sensitive species experience declines (Galbraith et al, 2010; Lopez et al. 2022; Vaughn and Atkinson 2025). Droughts affect mussels through direct mortality from stranding as well as physiological stress from altered water temperature and quality, reduced habitat and food availability and quality, increased predation and competition, disruption of reproductive cycles, and increased susceptibility to disease and pathogens. Although the effects of droughts, water withdrawals, and low flow conditions on mussels are an increasing area of study, there is a general paucity of data-driven consensus regarding optimal mitigation approaches and strategies (Cushway et al. 2024). Long-term management decisions regarding water withdrawals, particularly during extended or multi-year drought conditions, may consider factors beyond direct mortality such as the sublethal effects of drought and low flow conditions on freshwater mussels for a comprehensive understanding of the effects of prolonged low flows on freshwater mussels and aquatic communities.

Tennessee

A flexible conservation and connectivity tool to inform stream conservation prioritization

Healthy stream networks rely on diverse fish assemblages and the mobility of fish between habitats to maintain ecosystem structure and function. Anthropogenic structures that impede fish movement (e.g., roads, dams) disrupt life cycles of migratory fishes and isolate fish populations making them more sensitive to environmental stressors. Growing interest in barrier removal is driven by the recognition that restoring fish passage improves ecosystem health and resilience at multiple trophic levels, but identifying which streams should be reconnected and which barriers to remove remains an unresolved issue. Using the state of Missouri (USA) stream network, we developed an interactive decision support tool designed to help natural resource managers identify a shortlist of stream reaches to prioritize for reconnection, barrier removal, and habitat restoration. Our aquatic connectivity decision support tool, which we call AquaConn, is aimed at managers seeking to improve connectivity within and between existing conservation areas, particularly in wadeable streams. AquaConn provides a flexible platform that allows managers to consider entire assemblages of fish or individual species across local or more regional spatial scales. While AquaConn ( https://bit.ly/4kQgXK8 ) was built for the state of Missouri, our approach and framework can be replicated in any geographical region that has adequate fish assemblage data.

Missouri

Tracking and forecasting the Nation’s water quality - Priorities and strategies for 2013-2023

Water-quality issues facing the Nation are growing in number and complexity, and solutions are becoming more challenging and costly. Key factors that affect the quality of our drinking water supplies and ecosystem health include contaminants of human and natural origin in streams and groundwater; excess nutrients and sediment; alteration of natural streamflow; eutrophication of lakes, reservoirs, and coastal estuaries; and changes in surface and groundwater quality associated with changes in climate, land and water use, and management practices. Tracking and forecasting the Nation's water quality in the face of these and other pressing water-quality issues are important goals for 2013-2023, the third decade of the U.S. Geological Survey's National Water-Quality Assessment (NAWQA) program. In consultation with stakeholders and the National Research Council, a new strategic Science Plan has been developed that describes a strategy for building upon and enhancing assessment of the Nation's freshwater quality and aquatic ecosystems. The plan continues strategies that have been central to the NAWQA program's long-term success, but it also makes adjustments to the monitoring and modeling approaches NAWQA will use to address critical data and science information needs identified by stakeholders. This fact sheet describes surface-water and groundwater monitoring and modeling activities that will start in fiscal year 2013. It also provides examples of the types of data and information products planned for the next decade, including (1) restored monitoring for reliable and timely status and trend assessments, (2) maps and models that show the distribution of selected contaminants (such as atrazine, nitrate, and arsenic) in streams and aquifers, and (3) Web-based modeling tools that allow managers to evaluate how water quality may change in response to different scenarios of population growth, climate change, or land-use management.

Fact Sheet

Mercury and methylmercury in water and bottom sediments of wetlands at Lostwood National Wildlife Refuge, North Dakota, 2003-04

Certain ecosystem types, particularly wetlands, have environmental characteristics that can make them particularly sensitive to mercury inputs and that can result in large mercury concentrations in fish or other aquatic biota. To provide information needed to make effective management decisions to decrease human and wildlife exposure to methylmercury in northern prairie pothole wetlands, the U.S. Geological Survey, in cooperation with the North Dakota Department of Health, conducted a study to assess mercury and methylmercury concentrations in wetlands at the Lostwood National Wildlife Refuge (the Refuge) in northwest North Dakota. In April 2003 and 2004, water and bottom-sediment samples were collected from 44 individual wetlands that were classified as one of four wetland types. Many factors that may affect methylmercury production were considered in the study. The prairie pothole wetlands at the Refuge had large ranges in major environmental characteristics. Hydrologic differences, most notably semiannual wetting and drying cycles, that are intrinsic to prairie pothole wetlands affected methylmercury concentrations. This likely resulted from the stimulation of anaerobic microbial activity following reflooding of soils, particularly soils containing substantial organic carbon. Among the four wetland types considered for this study, seasonal and semipermanent wetlands generally had the largest methylmercury concentrations. Regardless of wetland type, however, methylmercury concentrations at the Refuge are large in relation to reported concentrations for natural aquatic systems.

North Dakota

Urban development and stream ecosystem health—Science capabilities of the U.S. Geological Survey

Urban development creates multiple stressors that can degrade stream ecosystems by changing stream hydrology, water quality, and physical habitat. Contaminants, habitat destruction, and increasing streamflow variability resulting from urban development have been associated with the disruption of biological communities, particularly the loss of sensitive aquatic biota. Understanding how algal, invertebrate, and fish communities respond to these physical and chemical stressors can provide important clues as to how streams should be managed to protect stream ecosystems as a watershed becomes increasingly urbanized. The U.S. Geological Survey continues to lead monitoring efforts and scientific studies on the effects of urban development on stream ecosystems in metropolitan areas across the United States.

Fact Sheet

Fort Collins Science Center-Fiscal year 2009 science accomplishments

Public land and natural resource managers in the United States are confronted with increasingly complex decisions that have important ramifications for both ecological and human systems. The scientists and technical professionals at the U.S. Geological Survey Fort Collins Science Center?many of whom are at the forefront of their fields?possess a unique blend of ecological, socioeconomic, and technological expertise. Because of this diverse talent, Fort Collins Science Center staff are able to apply a systems approach to investigating complicated ecological problems in a way that helps answer critical management questions. In addition, the Fort Collins Science Center has a long record of working closely with the academic community through cooperative agreements and other collaborations. The Fort Collins Science Center is deeply engaged with other U.S. Geological Survey science centers and partners throughout the Department of the Interior. As a regular practice, we incorporate the expertise of these partners in providing a full complement of ?the right people? to effectively tackle the multifaceted research problems of today's resource-management world. In Fiscal Year 2009, the Fort Collins Science Center's scientific and technical professionals continued research vital to Department of the Interior's science and management needs. Fort Collins Science Center work also supported the science needs of other Federal and State agencies as well as non-government organizations. Specifically, Fort Collins Science Center research and technical assistance focused on client and partner needs and goals in the areas of biological information management and delivery, enterprise information, fisheries and aquatic systems, invasive species, status and trends of biological resources (including human dimensions), terrestrial ecosystems, and wildlife resources. In the process, Fort Collins Science Center science addressed natural-science information needs identified in the U.S. Geological Survey Science Strategy (http://www.usgs.gov/science_strategy), including understanding and predicting change in ecosystems, climate variability and change, energy development and land management, the role of the environment and wildlife in human health, freshwater ecosystems, data integration, and evolving technologies. Several science projects were expanded in Fiscal Year 2009 to meet these evolving needs.

Open-File Report

Integrated investigations of environmental effects of historical mining in the Basin and Boulder Mining Districts, Boulder River watershed, Jefferson County, Montana

The Boulder River watershed is one of many watersheds in the western United States where historical mining has left a legacy of acid mine drainage and elevated concentrations of potentially toxic trace elements. Abandoned mine lands commonly are located on or affect Federal land. Cleaning up these Federal lands will require substantial investment of resources. As part of a cooperative effort with Federal land-management agencies, the U.S. Geological Survey implemented an Abandoned Mine Lands Initiative in 1997. The goal of the initiative was to use the watershed approach to develop a strategy for gathering and communicating the scientific information needed to formulate effective and cost-efficient remediation of affected lands in a watershed. The watershed approach is based on the premise that contaminated sites that have the most profound effect on water and ecosystem quality within an entire watershed should be identified, characterized, and ranked for remediation. The watershed approach provides an effective means to evaluate the overall status of affected resources and helps to focus remediation at sites where the most benefit will be gained in the watershed. Such a large-scale approach can result in the collection of extensive information on the geology and geochemistry of rocks and sediment, the hydrology and water chemistry of streams and ground water, and the diversity and health of aquatic and terrestrial organisms. During the assessment of the Boulder River watershed, we inventoried historical mines, defined geological conditions, assessed fish habitat, collected and chemically analyzed hundreds of water and sediment samples, conducted toxicity tests, analyzed fish tissue and indicators of physiological malfunction, examined invertebrates and biofilm, and defined hydrological regimes. Land- and resource-management agencies are faced with evaluating risks associated with thousands of potentially harmful mine sites, and this level of effort is not always feasible for every affected watershed. The detailed work described in this report can help Federal land-management agencies decide which characterization efforts would be most useful in characterization of other affected watersheds.

Montana

Environmental and anthropogenic drivers of contaminants in agricultural watersheds with implications for land management

If not managed properly, modern agricultural practices can alter surface and groundwater quality and drinking water resources resulting in potential negative effects on aquatic and terrestrial ecosystems. Exposure to agriculturally derived contaminant mixtures has the potential to alter habitat quality and negatively affect fish and other aquatic organisms. Implementation of conservation practices focused on improving water quality continues to increase particularly in agricultural landscapes throughout the United States. The goal of this study was to determine the consequences of land management actions on the primary drivers of contaminant mixtures in five agricultural watersheds in the Chesapeake Bay, the largest watershed of the Atlantic Seaboard in North America where fish health issues have been documented for two decades. Surface water was collected and analyzed for 301 organic contaminants to determine the benefits of implemented best management practices (BMPs) designed to reduce nutrients and sediment to streams in also reducing contaminants in surface waters. Of the contaminants measured, herbicides (atrazine, metolachlor), phytoestrogens (formononetin, genistein, equol), cholesterol and total estrogenicity (indicator of estrogenic response) were detected frequently enough to statistically compare to seasonal flow effects, landscape variables and BMP intensity. Contaminant concentrations were often positively correlated with seasonal stream flow, although the magnitude of this effect varied by contaminant across seasons and sites. Land-use and other less utilized landscape variables including biosolids, manure and pesticide application and percent phytoestrogen producing crops were inversely related with site-average contaminant concentrations. Increased BMP intensity was negatively related to contaminant concentrations indicating potential co-benefits of BMPs for contaminant reduction in the studied watersheds. The information gained from this study will help prioritize ecologically relevant contaminant mixtures for monitoring and contributes to understanding the benefits of BMPs on improving surface water quality to better manage living resources in agricultural landscapes inside and outside the Chesapeake Bay watershed.

Delaware, Maryland, New Jersey, New York, Pennsylv

USGS Environmental health science strategy: providing environmental health science for a changing world: Public review release

America has an abundance of natural resources. We have bountiful clean water, fertile soil, and unrivaled national parks, wildlife refuges, and public lands. These resources enrich our lives and preserve our health and wellbeing. These resources have been maintained because of our history of respect for their value and an enduring commitment to their vigilant protection. Awareness of the social, economic, and personal value of the health of our environment is increasing. The emergence of environmentally driven diseases caused by environmental exposure to contaminants and pathogens is a growing concern worldwide. New health threats and patterns of established threats are affected by both natural and anthropogenic changes to the environment. Human activities are key drivers of emerging (new and re-emerging) health threats. Societal demands for land and natural resources, a better quality of life, improved economic prosperity, and the environmental impacts associated with these demands will continue to increase. Natural earth processes, climate trends, and related climatic events will add to the environmental impact of human activities. These environmental drivers will influence exposure to disease agents, including viral, bacterial, prion, and fungal pathogens, parasites, natural earth materials, toxins and other biogenic compounds, and synthetic chemicals and substances. The U.S. Geological Survey (USGS) defines environmental health science broadly as the interdisciplinary study of relations among the quality of the physical environment, the health of the living environment, and human health. The interactions among these three spheres are driven by human activities, ecological processes, and natural earth processes; the interactions affect exposure to contaminants and pathogens and the severity of environmentally driven diseases in animals and people. This definition provides USGS with a framework for synthesizing natural science information from across the Bureau and providing it to environmental, natural resource, agricultural, and public-health managers. The USGS is a Federal science agency with a broad range of natural science expertise relevant to environmental health. USGS provides scientific information and tools as a scientific basis for management and policy decision making. USGS specializes in science at the environment-health interface, by characterizing the processes that affect the interaction among the physical environment, the living environment, and people, and the resulting factors that affect ecological and human exposure to disease agents. This report describes a 10-year strategy that encompasses the portfolio of USGS environmental health science. It summarizes national environmental health priorities that USGS is best suited to address, and will serve as a strategic framework for USGS environmental health science goals, actions, and outcomes for the next decade. Implementation of this strategy is intended to aid coordination of USGS environmental health activities and to provide a focal point for disseminating information to stakeholders. The "One Health" paradigm advocated by the World Health Organization (WHO, 2011), and the American Veterinary Medicine Association (AVMA, 2008), among others, is based on a general recognition that the health of humans, animals, and the environment are inextricably linked. Thus, successful efforts to protect that health will require increased interdisciplinary research and increased communication and collaboration among the broader scientific and health community. This strategy is built upon that paradigm. The vision, mission, and five cornerstone goals of the USGS Environmental Health Science Strategy were developed with significant input from a wide range of stakeholders. Vision - The USGS is a premier source of the environmental health science needed to safeguard the health of the environment, fish, wildlife, and people. Mission - The mission of USGS in environmental health science is to contribute scientific information to environmental, natural resource, agricultural, and public-health managers, who use that science to support sound decision making. USGS provides the science to: - Goal 1: Identify, prioritize, and detect contaminants and pathogens of emerging environmental concern. - Goal 2: Reduce the impact of contaminants on the environment, fish, wildlife, and people. - Goal 3: Reduce the impact of pathogens on the environment, fish, wildlife, and people. - Goal 4: Discover the complex interactions and combined effects of exposure to contaminants and pathogens. - Goal 5: Prepare for and respond to environmental impacts and related health threats of natural and anthropogenic disasters. Goals 1 through 4 are intended to provide science to address environmental health threats in a logical order, from informing prevention and preparedness, to supporting systematic management response to environmental health issues. Goal 4 addresses the interaction among contaminants and pathogens, an issue of emerging concern in environmental health science. Goal 5 acknowledges the fact that natural and anthropogenic disasters can cause immediate and prolonged adverse environmental health threats. This strategy proposes that USGS take the following strategic science actions to achieve each of the five goals of this strategy: Goal 1: Identify, prioritize, and detect contaminants and pathogens of emerging environmental concern. - Strategic Science Action 1. - Prioritize contaminants and pathogens of emerging concern to guide research, detection, and management activities. - Strategic Science Action 2. - Conduct surveillance and monitoring to provide early warning of emerging health threats. - Strategic Science Action 3. - Develop approaches and tools that identify vulnerable environmental settings, ecosystems, and species. Goal 2: Reduce the impact of contaminants on the environment, fish, wildlife, and people. - Strategic Science Action 1. - Systematically characterize the sources, occurrence, transport and fate of environmental contaminants to guide efforts to manage and mitigate contamination. - Strategic Science Action 2. - Evaluate the threats of contamination on the health of the environment, fish, wildlife, and people, and inform the associated management and protection efforts. - Strategic Science Action 3. - Characterize potential human exposure to support establishment of health-based standards or guidelines and contamination-reduction efforts. Goal 3: Reduce the impact of pathogens on the environment, fish, wildlife, and people. - Strategic Science Action 1. - Determine the biotic and abiotic factors that control the ecology of infectious diseases affecting natural populations of aquatic and terrestrial species and potential transmission to other animals and humans. - Strategic Science Action 2. - Establish how natural and anthropogenic environmental changes affect the distribution and severity of infectious diseases in natural populations of aquatic and terrestrial species and potential transmission to other animals and humans. - Strategic Science Action 3. - Develop surveillance systems to identify changing patterns of disease activity in priority geographic areas. Goal 4: Discover the complex interactions and combined effects of exposure to contaminants and pathogens. - Strategic Science Action 1. - Identify how exposure to one class of disease agents (contaminants or pathogens) can make an organism more susceptible to effects from exposure to the other class of disease agents. - Strategic Science Action 2. - Implement interdisciplinary studies that characterize the effects of combined exposure to pathogens and contaminants. Goal 5: Prepare for and respond to the environmental impacts and related health threats of natural and anthropogenic disasters. - Strategic Science Action 1. - Establish a formal interdisciplinary science capability to rapidly assess the environmental health risks associated with disasters. - Strategic Science Action 2. - Enhance methods to anticipate, prepare for, and identify environmental, ecological, and related health impacts of future disasters. This strategy is one of seven USGS science strategies developed concurrently: - Climate and Land Use Change - Core Science Systems - Ecosystems - Energy and Mineral Resources - Environmental Health - Natural Hazards - Water. This strategy describes how USGS will address the highest priority environmental health issues facing the Nation. The ultimate intended outcome of this science strategy is prevention and reduction of adverse impacts to the quality of the environment, the health of our living resources, and human health. Communication with, and receiving input from, partners and stakeholders regarding their science needs is essential for successful implementation of this strategy. It is incumbent on USGS to reach out to all stakeholders to ensure that USGS efforts are focused on the highest priority environmental health issues and that products are provided in the most timely and usable form to all those who can use them. USGS must reach out to the scientific community, internally and externally, to ensure that our efforts are integrated with and take full advantage of the activities of others.

Open-File Report

Assessment and management of ecological integrity: Chapter 12

Assessing and understanding the impacts of human activities on aquatic ecosystems has long been a focus of ecologists, water resources managers, and fisheries scientists. While traditional fisheries management focused on single-species approaches to enhance fish stocks, there is a growing emphasis on management approaches at community and ecosystem levels. Of course, as fisheries managers shift their attention from narrow (e.g., populations) to broad organizational scales (e.g., communities or ecosystems), ecological processes and management objectives become more complex. At the community level, fisheries managers may strive for a fish assemblage that is complex, persistent, and resilient to disturbance. Aquatic ecosystem level objectives may focus on management for habitat quality and ecological processes, such as nutrient dynamics, productivity, or trophic interactions, but a long-term goal of ecosystem management may be to maintain ecological integrity. However, human users and social, economic, and political demands of fisheries management often result in a reduction of ecological integrity in managed systems, and this conflict presents a principal challenge for the modern fisheries manager. The concepts of biotic integrity and ecological integrity are being applied in fisheries science, natural resource management, and environmental legislation, but explicit definitions of these terms are elusive. Biotic integrity of an ecosystem may be defined as the capability of supporting and maintaining an integrated, adaptive community of organisms having a species composition, diversity, and functional organization comparable to that of a natural habitat of the region (Karr and Dudley 1981). Following that, ecological integrity is the summation of chemical, physical, and biological integrity. Thus, the concept of ecological integrity extends beyond fish and represents a holistic approach for ecosystem management that is especially applicable to aquatic systems. The more general term, ecological condition, refers to the state of the physical, chemical, and biological characteristics of the environment and the processes and interactions that connect them. While the concept of ecological integrity may appear unambiguous, its assessment and practice are much less clear. Ecological integrity made its debut in the USA with the Clean Water Act (CWA) of 1972 (Federal Water Pollution Control Act, as amended through Public Law 107–303, November 27, 2002), which states only one objective, “to restore and maintain the chemical, physical, and biological integrity of the Nation’s waters.” This legislation compelled resource managers to focus on chemical pollution from point effluent sources, such as industrial and municipal outflows, as well as give attention to diffuse, chronic, and watershed effects on ecological integrity. Further, the CWA allowed pursuit of restoration programs in degraded water bodies and catalyzed the science and practice of restoration ecology. The term ecosystem health is often raised in discussions of ecological integrity. Perhaps it is natural to anthropomorphize our concern for personal health to ecosystems, so it becomes a useful metaphor for understanding the concept of ecological integrity. However, whether or not an ecosystem should be considered an entity, such as a superorganism, is a debate without end that began with early ecologists and continues today (Clements 1916; Suter 1993; Simon 1999a). Regardless, the ecosystem is indeed a natural unit with a level of organization and properties beyond the collection of those species that occupy it and presents the most appropriate spatial and organizational scale in which to assess and study ecological integrity. Streams and rivers serve as integrators of chemical, physical, and biological conditions across the landscape, and while the theory and practice associated with ecological integrity of aquatic systems is easily applied to flowing waters and is emphasized in this chapter, they are broadly applicable among all aquatic systems.

Book chapter

Appendix D: Synthesis element 1 (revised): Water temperature effects on fisheries and stream health in nontidal waters

A limited review of relevant scientific literature related to temperature sensitivities of fish species, stream health indicators, and any related geospatial information was conducted. Based on this review, we provide a syntheses of information related to nontidal waters in the Chesapeake Bay Rising stream temperatures will have a range of impacts on nontidal aquatic ecosystems. Cold headwaters and associated species like brook trout and sculpin are especially vulnerable to higher stream temperatures. Efforts could be taken to identify and protect high quality resilient cold headwater brook trout (Salvelinus fontinalis) habitat. More information on groundwater impacts on stream temperatures and ecologically relevant temperature thresholds for species of concern could help resource managers identify temperature resilient habitats and populations. A vulnerability assessment could be valuable to better understand the drivers and stressors of rising stream temperatures, their effects on aquatic resources, and the risk to fish and other aquatic species. Further research could help in developing and fully vetting a complete list of cold/cool water benthic macroinvertebrate taxa and freshwater mussel taxa that are vulnerable to temperature change in the Chesapeake watershed.

Report

Lake water quality: Chapter 4 in A synthesis of aquatic science for management of Lakes Mead and Mohave

Given the importance of the availability and quality of water in Lake Mead, it has become one of the most intensely sampled and studied bodies of water in the United States. As a result, data are available from sampling stations across the lake (fig. 4-1 and see U.S. Geological Survey Automated Water-Quality Platforms) to provide information on past and current (2012) water-quality conditions and on invasive species that influence—and are affected by—water quality. Water quality in Lakes Mead and Mohave generally exceeds standards set by the State of Nevada to protect water supplies for public uses: drinking water, aquatic ecosystem health, recreation, or agricultural irrigation. In comparison to other reservoirs studied by the U.S. Environmental Protection Agency (USEPA) for a national lake assessment (U.S. Environmental Protection Agency, 2010), Lake Mead is well within the highest or ‘good’ category for recreation and aquatic health (see U.S. Environmental Protection Agency National Lakes Assessment and Lake Mead for more details). While a small part of the lake, particularly Las Vegas Bay, is locally influenced by runoff from urbanized tributaries such as Las Vegas Wash, contaminant loading in the lake as a whole is low compared to other reservoirs in the nation, which are influenced by runoff from more heavily urbanized watersheds (Rosen and Van Metre, 2010).

Circular

The USGS Abandoned Mine Lands Initiative: Protecting and restoring the environment near abandoned mine lands

The Abandoned Mine Lands (AML) Initiative is part of a larger strategy of the U.S. Department of the Interior and the U.S. Department of Agriculture to clean up Federal lands contaminated by abandoned mines. Thousands of abandond hard-rock metal mines (such as gold, copper, lead, and zinc) have left a dual legacy across the Western United States. They reflect the historic development of the west, yet at the same time represent a possible threat to human health and local ecosystems. Abandoned Mine Lands (AML) are areas adjacent to or affected by abandoned mines. AML's often contain unmined mineral deposits, mine dumps (the ore and rock removed to get to the ore deposits), and tailings (the material left over from the ore processing) that contaminate the surrounding watershed and ecosystem. For example, streams near AML's can contain metals and (or) be so acidic that fish and aquatic insects cannot live in them. Many of these abandoned hard-rock mines are located on or adjacent to public lands administered by the Bureau of Land Management, National Park Service, and U.S. Forest Service. These federal land management agencies and the USGS are committed to mitigating the adverse effects that AML's can have on water quality and stream habitats. The USGS AML Initiative began in 1997 and will continue through 2001 in two pilot watersheds - the Boulder River basin in southwestern Montana and the upper Animas River basin in southwestern Colorado. The USGS is providing a wide range of scientific expertise to help land managers minimize and, where possible, eliminate the adverse environmental effects of AML's. USGS ecologists, geologists, water quality experts, hydrologists, geochemists, and mapping and digital data collection experts are collaborating to provide the scientific knowledge needed for an effective cleanup of AML's.

Arizona, California, Colorado, Idaho, Montana, New

Water quality and ecological risk assessment of intermittent streamflow through mining and urban areas of San Marcos River sub-basin, Mexico

Intermittent rivers are becoming more ecologically stressed worldwide. Flow cessation occurs naturally and spatiotemporally in these systems and anthropogenic activities such as wastewater discharges can have considerable impacts. Public entities mostly monitor water quality in permanent streams, leading to insufficient monitoring of intermittent streams and consequently to their potentially inadequate management.. This study analyzed spatiotemporal patterns of water quality and associated ecological risk through the quantification of physicochemical and microbiological pollutants in the intermittent river system of El Novillo and San Marcos in Northeast Mexico. Results showed that water quality varied geographically and seasonally. Based on national and international criteria, annual averages of water quality parameters analyzed suggested that streamflow in these river systems is of poor quality and poses high ecological risk to aquatic life. In the urban area, annual mean concentrations of Cd and Pb (0.14 and 0.4 mg/L) were 77- and 10-fold higher than their respective water quality criteria (<0.0018 and 0.04 mg/L). Statistically significant (q < 0.05) correlations were identified in concentrations of cyanide, Cd, Cu and Pb between wastewater seeping into the river and streamflow within the urban area. These observations highlight the unique sensitivity of intermittent urban streams to anthropogenic activities and may provide useful information to enhance current water management plans for the El Novillo-San Marcos River system for the protection of ecosystem integrity and human health.

El Novillo Canyon

Mercury in western North America: A synthesis of environmental contamination, fluxes, bioaccumulation, and risk to fish and wildlife

Western North America is a region defined by extreme gradients in geomorphology and climate, which support a diverse array of ecological communities and natural resources. The region also has extreme gradients in mercury (Hg) contamination due to a broad distribution of inorganic Hg sources. These diverse Hg sources and a varied landscape create a unique and complex mosaic of ecological risk from Hg impairment associated with differential methylmercury (MeHg) production and bioaccumulation. Understanding the landscape-scale variation in the magnitude and relative importance of processes associated with Hg transport, methylation, and MeHg bioaccumulation requires a multidisciplinary synthesis that transcends small-scale variability. The Western North America Mercury Synthesis compiled, analyzed, and interpreted spatial and temporal patterns and drivers of Hg and MeHg in air, soil, vegetation, sediments, fish, and wildlife across western North America. This collaboration evaluated the potential risk from Hg to fish, and wildlife health, human exposure, and examined resource management activities that influenced the risk of Hg contamination. This paper integrates the key information presented across the individual papers that comprise the synthesis. The compiled information indicates that Hg contamination is widespread, but heterogeneous, across western North America. The storage and transport of inorganic Hg across landscape gradients are largely regulated by climate and land-cover factors such as plant productivity and precipitation. Importantly, there was a striking lack of concordance between pools and sources of inorganic Hg, and MeHg in aquatic food webs. Additionally, water management had a widespread influence on MeHg bioaccumulation in aquatic ecosystems, whereas mining impacts where relatively localized. These results highlight the decoupling of inorganic Hg sources with MeHg production and bioaccumulation. Together the findings indicate that developing efforts to control MeHg production in the West may be particularly beneficial for reducing food web exposure instead of efforts to simply control inorganic Hg sources.

Science of the Total Environment

Lessons learned from 20 y of monitoring suburban development with distributed stormwater management in Clarksburg, Maryland, USA

Urban development is a well-known stressor for stream ecosystems, presenting a challenge to managers tasked with mitigating its effects. For the past 20 y, streamflow, water quality, geomorphology, and benthic communities were monitored in 5 watersheds in Montgomery County, Maryland, USA. This study presents a synthesis of multiple studies of monitoring efforts in the study area and new analysis of more recent monitoring data to document the primary lessons learned from monitoring. The monitored watersheds include a forested control, an urban control with centralized stormwater management, and 3 suburban treatment watersheds featuring low-impact development and a high density of infiltration-focused stormwater facilities distributed across the watershed. Treatment watersheds were monitored before development, during construction, and after development. Monitoring was initiated to inform adaptive management of stormwater and impervious cover limits within the study area, with a focus on the impacts of distributed stormwater management. Results from our synthesis indicate that distributed stormwater management is advantageous compared with centralized stormwater management in numerous ways. Hydrologic benefits were greater with distributed stormwater infrastructure, demonstrating the ability to mitigate runoff volumes and peak flows and, for small storms, replicate predevelopment conditions. Baseflow temporarily increased during the construction phase in the treatment watersheds. Water-quality benefits were mixed, with declines in baseflow nitrate concentrations but limited changes to nitrate export and increases in specific conductance after development. Substantial topographic changes occurred during construction in the treatment watersheds, including changes within the riparian zone, despite riparian buffer protections. Ecological monitoring indicated that even though index of biotic integrity scores rebounded in some cases, sensitive benthic macroinvertebrate families did not fully recover in the treatment watersheds. Lessons learned from this synthesis highlight the importance of tracking multiple indicators of stream health and considering past land use and that more stormwater facilities distributed across the watershed is beneficial but cannot mitigate the effects of all urban stressors on aquatic ecosystems.

Maryland