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At least 883 records · Page 49Linked to original sources
USGS2025

Optimizing sampling across transect-based methods improves the power of agroecological monitoring data

Transect-based monitoring has long been a valuable tool in ecosystem monitoring to measure multiple ecosystem attributes. The line-point intercept (LPI), vegetation height, and canopy gap intercept methods comprise a set of core methods, which provide indicators of ecosystem condition. However, users often struggle to design a sampling strategy that optimizes the ability to detect ecological change using transect-based methods. We assessed the sensitivity of each of these core methods to transect length, number, and sampling interval in 1-ha plots to determine: (1) minimum sampling required to describe ecosystem characteristics and detect change; and (2) optimal transect length and number to make recommendations for future analyses and monitoring efforts. We used data from 13 National Wind Erosion Research Network locations, including five LTAR sites, spanning the western United States, which included 151 plot sampling events over time across five biomes. We found that longer and increased replicates of transects were more important for reducing sampling error than increased sample intensity along fewer transects per plot. For all methods and indicators across biomes plots, three 100-m transects reduced sampling error such that indicator estimates fell within a 95% confidence interval of ±5% for canopy gap intercept and LPI-total foliar cover, ±5 cm for height, and ±2 species for LPI-species counts. For the same criteria at 80% confidence intervals, two 100-m transects are needed. Site-scale inference was strongly affected by sample design, consequently our understanding of ecological dynamics may be influenced by sampling decisions.

western United States↗
USGS2012

A study of the spawning ecology and early life history survival of Bonneville Cutthroat Trout

We completed a large‐scale field experiment in four tributaries of the Logan River, Utah, where the largest metapopulation of imperiled Bonneville cutthroat trout Oncorhynchus clarkii utah persists. We documented the spatial and temporal distributions of spawners, quantified substrate use versus substrate availability, and evaluated differences in hatch and emergence fry success between and among sites in relation to habitat characteristics. We observed considerable variability in the timing, magnitude, and duration of spawning among study areas (streams), in part as a function of a variable, multipeaked hydrograph. Nevertheless, across study areas, >70% of redds were constructed on the final descending limb of the hydrograph. Despite large differences in the amount of spawning substrate available, Bonneville cutthroat trout utilized a narrow range of substrate and sizes (3–80 mm) similar to that utilized by other subspecies of cutthroat trout, albeit biased towards larger sizes. Water temperatures generally remained below the recommended range (6–17°C) for spawning; however, the viability of this metapopulation of cutthroat trout suggests that the recommended temperature range for spawning is overestimated for this subspecies and (or) does not account for local thermal adaptation. Hatch varied from 43% to 77% and emergence survival from 39% to 65% among streams, and within‐stream variability was substantial; both survival rates declined significantly as a function of increased fine sediment concentrations. Egg development rates were nearly 50% greater in a high‐elevation tributary where redd counts were also lowest. In high, mountain systems with short growing seasons, this incubation delay likely presents a significant growth disadvantage for age‐0 trout. Our research enhances our understanding of Bonneville cutthroat trout spawning ecology and early survival and provides critical information for aiding in the development of benchmarks for their recovery. Effective conservation efforts should be directed towards minimizing anthropogenic activities that result in excess sedimentation in their critical spawning tributaries.

Utah↗
USGS2025

Manipulation of the Symbiodiniaceae microbiome confers multigenerational impacts on symbioses and reproductive ecology of its Exaiptasia diaphana host

Symbiodiniaceae-associated microbiota strongly influence cnidarian symbioses. We systematically reduced the bacterial and fungal communities associated with Symbiodiniaceae to study potential effects on the cnidarian holobiont Exaiptasia diaphana (Aiptasia). Clonal anemones were inoculated with xenic Breviolum minutum (SSB01) and microbiome-manipulated cultures after antibacterial or antifungal treatment. The asexual reproduction of pedal laceration allowed for three generations of clonal aposymbiotic Aiptasia to be utilised in this study, from the initial adult generation (G0), to the first (G1), and second (G2) generation. We inoculated small and large G1 Aiptasia with SSB01 algae and monitored onset of symbiosis, rate of algal proliferation, and holobiont characteristics. Sequencing the 16S and 18S rRNA gene regions identified significant differences in the bacterial and fungal communities of the G0 and G1 generations, alongside differences between the size classes of small and large G1 anemones. The microbiome of larger G1 individuals was distinct to the smaller G1 anemones, suggesting a microbiome maturation process. Control Breviolum minutum cultures exhibited a significantly greater proliferation rate in large G1 anemones when compared to antibacterial or antifungal treated cultures, whereas the opposite trend was documented in the small G1 anemones. Although no differences were observed between algal photochemical parameters, or the growth and polyp activity of G1 juveniles, we observed a significant influence in the production of G2 clones between treatments. Overall, we provide strong ecological implications of manipulating Symbiodiniaceae microbiome, not for the algae themselves, but for the maturation of the host Aiptasia, as well as for the cnidarian holobiont over multiple generations.

The ISME Journal↗
USGS2026

Putting weight to work: A review and examples of weight-based indicators in freshwater fish stock assessment

Despite being a direct measure of biomass and central to fisheries management, weight-based metrics remain underutilized in freshwater fish stock assessment. Here, we present a concise review of the application of weight in evaluating freshwater fish populations. We examine the historical use of weighing, assess how weight is applied across subdisciplines of freshwater fish science, contrast weight- and length-based approaches, and identify biases in their application. We then synthesize weight-based metrics, indices, and models within four broad categories—population and community weight structure; condition, growth, and efficiency; reproductive potential and production; and yield and exploitation dynamics—highlighting approaches that inform fish ecology, population and community dynamics, and vital rates. We conclude by identifying key opportunities and methodological innovations needed to expand the effective use of weight-based metrics in freshwater fish conservation and management.

North American Journal of Fisheries Management↗
USGS2016

To manage inland fisheries is to manage at the social-ecological watershed scale

Approaches to managing inland fisheries vary between systems and regions but are often based on large-scale marine fisheries principles and thus limited and outdated. Rarely do they adopt holistic approaches that consider the complex interplay among humans, fish, and the environment. We argue that there is an urgent need for a shift in inland fisheries management towards holistic and transdisciplinary approaches that embrace the principles of social-ecological systems at the watershed scale. The interconnectedness of inland fisheries with their associated watershed (biotic, abiotic, and humans) make them extremely complex and challenging to manage and protect. For this reason, the watershed is a logical management unit. To assist management at this scale, we propose a framework that integrates disparate concepts and management paradigms to facilitate inland fisheries management and sustainability. We contend that inland fisheries need to be managed as social-ecological watershed system (SEWS). The framework supports watershed-scale and transboundary governance to manage inland fisheries, and transdisciplinary projects and teams to ensure relevant and applicable monitoring and research. We discuss concepts of social-ecological feedback and interactions of multiple stressors and factors within/between the social-ecological systems. Moreover, we emphasize that management, monitoring, and research on inland fisheries at the watershed scale are needed to ensure long-term sustainable and resilient fisheries.

Journal of Environmental Management↗
USGS2018

Enhancement of a parsimonious water balance model to simulate surface hydrology in a glacierized watershed

The U.S. Geological Survey monthly water balance model (MWBM) was enhanced with the capability to simulate glaciers in order to make it more suitable for simulating cold region hydrology. The new model, MWBMglacier, is demonstrated in the heavily glacierized and ecologically important Copper River watershed in Southcentral Alaska. Simulated water budget components compared well to satellite‐based observations and ground measurements of streamflow, evapotranspiration, snow extent, and total water storage, with differences ranging from 0.2% to 7% of the precipitation flux. Nash Sutcliffe efficiency for simulated and observed streamflow was greater than 0.8 for six of eight stream gages. Snow extent matched satellite‐based observations with Nash Sutcliffe efficiency values of greater than 0.89 in the four Copper River ecoregions represented. During the simulation period 1949 to 2009, glacier ice melt contributed 25% of total runoff, ranging from 12% to 45% in different tributaries, and glacierized area was reduced by 6%. Statistically significant ( p < 0.05) decreasing and increasing trends in annual glacier mass balance occurred during the multidecade cool and warm phases of the Pacific Decadal Oscillation, respectively, reinforcing the link between climate perturbations and glacier mass balance change. The simulations of glaciers and total runoff for a large, remote region of Alaska provide useful data to evaluate hydrologic, cryospheric, ecologic, and climatic trends. MWBM glacier is a valuable tool to understand when, and to what extent, streamflow may increase or decrease as glaciers respond to a changing climate.

Journal of Geophysical Research F: Earth Surface↗
USGS2019

Assemblage structure, vertical distributions and stable‐isotope compositions of anguilliform leptocephali in the Gulf of Mexico

In August 2007, October 2008 and September–October 2010, 241 Tucker trawl and plankton net tows were conducted at the surface to depths of 1377 m at six locations in the northern and eastern Gulf of Mexico (GOM) to document leptocephalus diversity and determine how assemblage structure, larval size, abundance and isotopic signatures differ across the region and with depth. Overall, 2696 leptocephali representing 59 distinct taxa from 10 families were collected. Five families accounted for 96% of the total catch with Congridae and Ophichthidae being the most abundant. The top four most abundant species composed 59% of the total catch and included: Ariosoma balearicum , Paraconger caudilimbatus , Rhynchoconger flavus and Ophichthus gomesii . Four anguilliform species not previously documented in the GOM as adults or leptocephali were collected in this study, including Monopenchelys acuta , Quassiremus ascensionis , Saurenchelys stylura and one leptocephalus only known from its larval stage, Leptocephalus proboscideus . Leptocephalus catches were significantly greater at night than during the day. Catches at night were concentrated in the upper 200 m of the water column and significantly declined with increasing depth. Leptocephali abundances and assemblages were significantly different between sites on the upper continental slope ( c . 500 m depth) and sites on the middle to lower continental slope ( c . 1500–2300 m). Sites on the lower continental slope had a mixture of deep‐sea demersal, bathypelagic and coastal species, whereas upper‐slope sites contained several numerically dominant species ( e.g ., A. balearicum , P. caudilimbatus ) that probably spawn over the continental shelf and upper slope of the GOM. Standard lengths of the four dominant species differed between sites and years, indicating heterochronic reproduction and potential larval source pools within and outside of the GOM. Stable‐isotope analyses (δ 13 C and δ 15 N) conducted on 185 specimens from six families revealed that leptocephali had a wide range of isotopic values at the family and size‐class levels. Species in the families Muraenidae, Congridae and Ophichthidae had similar δ 15 N values compared with the broad range of δ 15 N values seen in the deep‐sea families Nemichthyidae, Nettastomatidae and Synaphobranchidae. Stable‐isotope values were variably related to length, with δ 15 N values being positively size correlated in ophichthids and δ 13 C values being negatively size correlated in A. balearicum and P. caudilimbatus . Results suggest that leptocephali feed in various water depths and masses, and on different components of POM, which could lead to niche partitioning. Ecological aspects of these important members of the plankton community provide insight into larval connectivity in the GOM as well as the early life history of Anguilliformes.

Gulf of Mexico↗
USGS1998

Vulnerability to predation and physiological stress responses in juvenile chinook salmon ( Oncorhynchus tshawytscha ) experimentally infected with Renibacterium salmoninarum

We experimentally infected juvenile chinook salmon ( Oncorhynchus tshawytscha ) with Renibacterium salmoninarum (Rs), the causative agent of bacterial kidney disease (BKD), to examine the vulnerability to predation of fish with differing levels of Rs infection and assess physiological change during progression of the disease. Immersion challenges conducted during 1992 and 1994 produced fish with either a low to moderate (1992) or high (1994) infection level of Rs during the 14-week postchallenge rearing period. When equal numbers of treatment and unchallenged control fish were subjected to predation by either northern squaw fish ( Ptychocheilus oregonensis ) or smallmouth bass ( Micropterus dolomieui) , Rs-challenged fish were eaten in significantly greater numbers than controls by nearly two to one. In 1994, we also sampled fish every 2 weeks after the challenge to determine some stressful effects of Rs infection. During disease progression in fish, plasma cortisol and lactate increased significantly whereas glucose decreased significantly. Our results indicate the role that BKD may play in predator-prey interactions, thus ascribing some ecological significance to this disease beyond that of direct pathogen-related mortality. In addition, the physiological changes observed in our fish during the chronic progression of BKD indicate that this disease is stressful, particularly during the later stages.

Canadian Journal of Fisheries and Aquatic Sciences↗
USGS2022

To catch a (marsh) predator: Modified trapping methods for breeding and wintering Northern Harriers (Circus hudsonius)

Although there are a variety of methods available for trapping raptors, some species, such as Northern Harriers ( Circus hudsonius ), are not easily captured with standard methods. We tested several existing trapping methods and modified two of them based on Northern Harrier ecology and behavior across seasons in a study population in California. No previously successful methods described in the literature were effective for our study population. Two modified methods were most effective for trapping Northern Harriers: (1) placing two dho-gazas around the nest in a V-shape and flushing the adult female into the nets during the breeding season, and (2) using remote-triggered bow nets baited with waterbird carcasses in winter. Dho-gazas at the nest worked well during the early nestling-rearing stage, when nestlings were younger than 2 wk old and adult females were most attentive. This method was not suitable during the incubation stage because Northern Harriers are prone to nest abandonment. In the winter, Northern Harriers are known to scavenge, yet this aspect of their behavioral ecology has previously been rarely exploited for trapping purposes. These two methods allow for selective Northern Harrier trapping across seasons and provide modified options for research on this understudied and declining species in North America.

California↗
USGS2017

A serosurvey of diseases of free-ranging gray wolves (Canis lupus) in Minnesota

We tested serum samples from 387 free-ranging wolves ( Canis lupus ) from 2007 to 2013 for exposure to eight canid pathogens to establish baseline data on disease prevalence and spatial distribution in Minnesota's wolf population. We found high exposure to canine adenoviruses 1 and 2 (88% adults, 45% pups), canine parvovirus (82% adults, 24% pups), and Lyme disease (76% adults, 39% pups). Sixty-six percent of adults and 36% of pups exhibited exposure to the protozoan parasite Neospora caninum . Exposure to arboviruses was confirmed, including West Nile virus (37% adults, 18% pups) and eastern equine encephalitis (3% adults). Exposure rates were lower for canine distemper (19% adults, 5% pups) and heartworm (7% adults, 3% pups). Significant spatial trends were observed in wolves exposed to canine parvovirus and Lyme disease. Serologic data do not confirm clinical disease, but better understanding of disease ecology of wolves can provide valuable insight into wildlife population dynamics and improve management of these species.

Minnesota↗
USGS1995

What is Falco Altaicus Menzbier?

The systematics of the Altay falcon (Falco altaicus/lorenzi) remains enigmatic. First reported in 1811, it has been treated as a gyrfalcon (F. rusticolus), a saker (F. cherrug), and two separate species (F. lorenzi and F. altaicus). Of 53 'altaicus' specimens examined, at least two are misidentified gyrfalcons, many are typical sakers, but 34 (the core group) are considered to be the true Altay falcon type. Adults have red, brown, and gray color morphs. The red (backed) morph closely resembles some eastern sakers; the chocolate and gray morphs resemble respective gyrfalcon morphs. While the true affinities of the Altay falcon will be resolved by molecular genetics, the ecological, geographical, and morphological information suggest that the core group represents a gyrfalcon-saker cross that is being swamped through back crosses with the saker. The breeding range of the core group (i.e., the Altay and Sayan Mountains) is much smaller than previously reported.

Journal of Raptor Research↗
USGS2016

INVASIVESNET towards an International Association for Open Knowledge on Invasive Alien Species

In a world where invasive alien species (IAS) are recognised as one of the major threats to biodiversity, leading scientists from five continents have come together to propose the concept of developing an international association for open knowledge and open data on IAS&mdash;termed &ldquo;INVASIVESNET&rdquo;. This new association will facilitate greater understanding and improved management of invasive alien species (IAS) and biological invasions globally, by developing a sustainable network of networks for effective knowledge exchange. In addition to their inclusion in the CBD Strategic Plan for Biodiversity, the increasing ecological, social, cultural and economic impacts associated with IAS have driven the development of multiple legal instruments and policies. This increases the need for greater co-ordination, co-operation, and information exchange among scientists, management, the community of practice and the public. INVASIVESNET will be formed by linking new and existing networks of interested stakeholders including international and national expert working groups and initiatives, individual scientists, database managers, thematic open access journals, environmental agencies, practitioners, managers, industry, non-government organisations, citizens and educational bodies. The association will develop technical tools and cyberinfrastructure for the collection, management and dissemination of data and information on IAS; create an effective communication platform for global stakeholders; and promote coordination and collaboration through international meetings, workshops, education, training and outreach. To date, the sustainability of many strategic national and international initiatives on IAS have unfortunately been hampered by time-limited grants or funding cycles. Recognising that IAS initiatives need to be globally coordinated and ongoing, we aim to develop a sustainable knowledge sharing association to connect the outputs of IAS research and to inform the consequential management and societal challenges arising from IAS introductions. INVASIVESNET will provide a dynamic and enduring network of networks to ensure the continuity of connections among the IAS community of practice, science and management.

Management of Biological Invasions↗
USGS2022

Visualizing social-ecological intensities for management of recreation visitors in a multiuse system

Accounting for the variation of visitor conflicts and ecological disturbance of outdoor recreation activities across space and time can cause difficulty for managers seeking to make decisions in social-ecological systems (SESs). We develop a method to quantify and visualize social and ecological intensities resulting from outdoor recreation. We demonstrate the utility of our method at Valentine National Wildlife Refuge, where we conducted onsite surveys for an entire year of recreationists participating in consumptive (i.e., hunting), intermediate-consumptive (i.e., fishing) and nonconsumptive (e.g., hiking) activities. We use survey results and combine them with expert consensus by engaging refuge managers and scientists (i.e., Delphi method) to chart patterns in social (e.g., visitor conflicts) and ecological (e.g., damages to natural resources) intensities across multiple spatial and temporal scales. We highlight unexpected patterns that are revealed by collectively considering multi-activity groups through space and time and combining different survey methods (onsite, Delphi method). Based on the consensus reached using the Delphi method , the consumptive group had the greatest potential for social conflicts and ecological disturbances. Social and ecological intensities (i.e., hotspots) of recreation varied across lake types and seasons, highlighting high-intensity areas and periods on the refuge. Accounting for diverse outdoor recreation activities and coinciding social and ecological intensities will allow managers of SESs the ability to concomitantly preserve ecological resources, prioritize conservation efforts, and minimize visitor conflicts. We demonstrate the utility and ease of use of this technique, which can be implemented by managers and scientists within their respective SES of interest.

Nebraska↗
USGS2023

Initial insights on the thermal ecology of lake whitefish in northwestern Lake Michigan

Lake whitefish Coregonus clupeaformis are a native coldwater species supporting important recreational and commercial fisheries in the Laurentian Great Lakes. Climate-related changes in water temperature may have important implications for the future sustainability of these fisheries. However, projecting future habitat availability is difficult because limited information is available on lake whitefish thermal ecology in the region. In this study, archival temperature loggers were implanted into 400 lake whitefish from northwestern Lake Michigan, including Green Bay, during October–November 2017. Loggers recorded temperature for 11 months at 4-hr intervals. Thirteen recovered temperature loggers were used in analyses. In winter (1 December–31 March), temperatures occupied by lake whitefish ranged from 0 to 8.0 °C, while in spring (1 April–31 May) temperatures ranged from 0 to 20.0 °C. In summer (1 June–15 September) and fall (16 September–7 November), lake whitefish occupied temperatures of 4–21.5 and 4–21.0 °C, respectively. Average temperatures in summer (10.8 °C) were within the previously proposed optimal temperature range (10–14 °C) and broad thermal niche (7–17 °C); however, 58% of observations were outside the optimal temperature range and 11% of observations were outside the broad thermal niche. Our results suggest that lake whitefish from northwestern Lake Michigan inhabit temperatures both above and below previously reported expected temperature ranges. This study provides initial insights on lake whitefish thermal ecology in Lake Michigan and can be used as a baseline for future work aimed at determining how lake whitefish habitat availability may change in the future.

Wisconsin↗
USGS2013

Circuit theory and model-based inference for landscape connectivity

Circuit theory has seen extensive recent use in the field of ecology, where it is often applied to study functional connectivity. The landscape is typically represented by a network of nodes and resistors, with the resistance between nodes a function of landscape characteristics. The effective distance between two locations on a landscape is represented by the resistance distance between the nodes in the network. Circuit theory has been applied to many other scientific fields for exploratory analyses, but parametric models for circuits are not common in the scientific literature. To model circuits explicitly, we demonstrate a link between Gaussian Markov random fields and contemporary circuit theory using a covariance structure that induces the necessary resistance distance. This provides a parametric model for second-order observations from such a system. In the landscape ecology setting, the proposed model provides a simple framework where inference can be obtained for effects that landscape features have on functional connectivity. We illustrate the approach through a landscape genetics study linking gene flow in alpine chamois (Rupicapra rupicapra) to the underlying landscape.

Journal of the American Statistical Association↗
USGS2015

Current land bird distribution and trends in population abundance between 1982 and 2012 on Rota, Mariana Islands

The western Pacific island of Rota is the fourth largest human-inhabited island in the Mariana archipelago and designated an Endemic Bird Area. Between 1982 and 2012, 12 point-transect distance-sampling surveys were conducted to assess bird population status. Surveys did not consistently sample the entire island; thus, we used a ratio estimator to estimate bird abundances in strata not sampled during every survey. Trends in population size were reliably estimated for 11 of 13 bird species, and 7 species declined over the 30-y time series, including the island collared-dove Streptopelia bitorquata , white-throated ground-dove Gallicolumba xanthonura , Mariana fruit-dove Ptilinopus roseicapilla , collared kingfisher Todiramphus chloris orii , Micronesian myzomela Myzomela rubratra , black drongo Dicrurus macrocercus , and Mariana crow Corvus kubaryi . The endangered Mariana crow (x̄ = 81 birds, 95% CI 30&ndash;202) declined sharply to fewer than 200 individuals in 2012, down from 1,491 birds in 1982 (95% CI = 815&ndash;3,115). Trends increased for white tern Gygis alba , rufous fantail Rhipidura rufifrons mariae , and Micronesian starling Aplonis opaca . Numbers of the endangered Rota white-eye Zosterops rotensis declined from 1982 to the late 1990s but returned to 1980s levels by 2012, resulting in an overall stable trend. Trends for the yellow bittern Ixobrychus sinensis were inconclusive. Eurasian tree sparrow Passer montanus trends were not assessed; however, their numbers in 1982 and 2012 were similar. Occupancy models of the 2012 survey data revealed general patterns of land cover use and detectability among 12 species that could be reliably modeled. Occupancy was not assessed for the Eurasian tree sparrow because of insufficient detections. Based on the 2012 survey, bird distribution and abundance across Rota revealed three general patterns: 1) range restriction, including Mariana crow, Rota white-eye, and Eurasian tree sparrow; 2) widespread distribution, low abundance, including collared kingfisher, island collared-dove, white-throated ground-dove, Mariana fruit-dove, white tern, yellow bittern, black drongo, and Micronesian myzomela; and 3) widespread distribution, high abundance, including rufous fantail and Micronesian starling. The Mariana crow was dispersed around the periphery of the island in steep forested land-cover types. In contrast, the Rota white-eye was restricted to the high-elevation mesa. Only for the white-throated ground-dove was there a significant difference among cover types, with lower occupancy in open field than in forested areas. Vegetation was included in the best-fit occupancy models for yellow bittern, black drongo, Micronesian myzomela, and Micronesian starling, but vegetation type was not a significant variable nor included in the top models for the remaining five species: white tern, island collared-dove, Mariana fruit-dove, collared kingfisher, and rufous fantail. Given declining population trends, the Rota bird-monitoring program could benefit from establishing threshold and alert limits and identifying alternative research and management actions. Continued monitoring and demographic sampling, in conjunction with ecological studies, are needed to understand why most bird species on Rota are declining, identify the causative agents, and assess effectiveness of conservation actions, especially for the Mariana crow.

Rota↗
USGS2000

Correspondence of stream benthic invertebrate assemblages to regional classification schemes in Missouri

Benthic invertebrates from 44 reference streams throughout the state of Missouri were examined for their concordance with established regionalization systems, both aquatic and terrestrial. Invertebrate assemblages coincided nicely with Pflieger's established aquatic faunal regions system, expanding its generality to more than fish assemblages. Our benthic invertebrate and Pflieger's fish assemblages coincided well with both Bailey's ecological sections and Omernik's ecoregions. Subregionalization using Pflieger's subregions and Bailey's subsections further reduced unexplained variation and is recommended for use wherever possible. The concordance of the aquatic fauna and terrestrial features implies the possibility of coordinated regional management among different natural resource disciplines.

Missouri↗