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At least 865 records · Page 48Linked to original sources

USGS2013

A multilocus evaluation of ermine ( Mustela erminea ) across the Holarctic, testing hypotheses of Pleistocene diversification in response to climate change

Aim: We examined data for ermine (Mustela erminea) to test two sets of diversification hypotheses concerning the number and location of late Pleistocene refugia, the timing and mode of diversification, and the evolutionary influence of insularization. Location: Temperate and sub-Arctic Northern Hemisphere. Methods: We used up to two mitochondrial and four nuclear loci from 237 specimens for statistical phylogeographical and demographic analyses. Coalescent species-tree estimation used a Bayesian approach for clade divergence based on external mutation rate calibrations. Approximate Bayesian methods were used to assess population size, timing of divergence and gene flow. Results: Limited structure coupled with evidence of population growth across broad regions, including previously ice-covered areas, indicated expansion from multiple centres of differentiation, but high endemism along the North Pacific coast (NPC). A bifurcating model of diversification with recent growth spanning three glacial cycles best explained the empirical data. Main conclusions: A newly identified clade in North America indicated a fourth refugial area for ermine. The shallow coalescence of all extant ermine reflects a recent history of diversification overlying a deeper fossil record. Post-glacial colonization has led to potential contact zones for multiple lineages in north-western North America. A model of diversification of ermine accompanied by recent gene flow was marginally less well supported than a model of divergence of major clades in response to the most recent glacial cycles.

Journal of Biogeography↗

USGS2014

Testing metapopulation concepts: effects of patch characteristics and neighborhood occupancy on the dynamics of an endangered lagomorph

Metapopulation ecology is a field that is richer in theory than in empirical results. Many existing empirical studies use an incidence function approach based on spatial patterns and key assumptions about extinction and colonization rates. Here we recast these assumptions as hypotheses to be tested using 18 years of historic detection survey data combined with four years of data from a new monitoring program for the Lower Keys marsh rabbit. We developed a new model to estimate probabilities of local extinction and colonization in the presence of nondetection, while accounting for estimated occupancy levels of neighboring patches. We used model selection to identify important drivers of population turnover and estimate the effective neighborhood size for this system. Several key relationships related to patch size and isolation that are often assumed in metapopulation models were supported: patch size was negatively related to the probability of extinction and positively related to colonization, and estimated occupancy of neighboring patches was positively related to colonization and negatively related to extinction probabilities. This latter relationship suggested the existence of rescue effects. In our study system, we inferred that coastal patches experienced higher probabilities of extinction and colonization than interior patches. Interior patches exhibited higher occupancy probabilities and may serve as refugia, permitting colonization of coastal patches following disturbances such as hurricanes and storm surges. Our modeling approach should be useful for incorporating neighbor occupancy into future metapopulation analyses and in dealing with other historic occupancy surveys that may not include the recommended levels of sampling replication.

Florida↗

USGS2010

Using the Sonoran and Libyan Desert test sites to monitor the temporal stability of reflective solar bands for Landsat 7 enhanced thematic mapper plus and Terra moderate resolution imaging spectroradiometer sensors

Remote sensing imagery is effective for monitoring environmental and climatic changes because of the extent of the global coverage and long time scale of the observations. Radiometric calibration of remote sensing sensors is essential for quantitative & qualitative science and applications. Pseudo-invariant ground targets have been extensively used to monitor the long-term radiometric calibration stability of remote sensing sensors. This paper focuses on the use of the Sonoran Desert site to monitor the radiometric stability of the Landsat 7 (L7) Enhanced Thematic Mapper Plus (ETM+) and Terra Moderate Resolution Imaging Spectroradiometer (MODIS) sensors. The results are compared with the widely used Libya 4 Desert site in an attempt to evaluate the suitability of the Sonoran Desert site for sensor inter-comparison and calibration stability monitoring. Since the overpass times of ETM+ and MODIS differ by about 30 minutes, the impacts due to different view geometries or test site Bi-directional Reflectance Distribution Function (BRDF) are also presented. In general, the long-term drifts in the visible bands are relatively large compared to the drift in the near-infrared bands of both sensors. The lifetime Top-of-Atmosphere (TOA) reflectance trends from both sensors over 10 years are extremely stable, changing by no more than 0.1% per year (except ETM+ Band 1 and MODIS Band 3) over the two sites used for the study. The use of a semi-empirical BRDF model can reduce the impacts due to view geometries, thus enabling a better estimate of sensor temporal drifts.

Journal of Applied Remote Sensing↗

USGS2007

Cross-calibration of the Terra MODIS, Landsat 7 ETM+ and EO-1 ALI sensors using near-simultaneous surface observation over the Railroad Valley Playa, Nevada, test site

A cross-calibration methodology has been developed using coincident image pairs from the Terra Moderate Resolution Imaging Spectroradiometer (MODIS), the Landsat 7 (L7) Enhanced Thematic Mapper Plus (ETM+) and the Earth Observing EO-1 Advanced Land Imager (ALI) to verify the absolute radiometric calibration accuracy of these sensors with respect to each other. To quantify the effects due to different spectral responses, the Relative Spectral Responses (RSR) of these sensors were studied and compared by developing a set of "figures-of-merit." Seven cloud-free scenes collected over the Railroad Valley Playa, Nevada (RVPN), test site were used to conduct the cross-calibration study. This cross-calibration approach was based on image statistics from near-simultaneous observations made by different satellite sensors. Homogeneous regions of interest (ROI) were selected in the image pairs, and the mean target statistics were converted to absolute units of at-sensor reflectance. Using these reflectances, a set of cross-calibration equations were developed giving a relative gain and bias between the sensor pair.

Conference Paper↗

USGS2009

Using the Sonoran Desert test site to monitor the long-term radiometric stability of the Landsat TM/ETM+ and Terra MODIS sensors

Pseudo-invariant ground targets have been extensively used to monitor the long-term radiometric calibration stability of remote sensing instruments. The NASA MODIS Characterization Support Team (MCST), in collaboration with members from the U.S. Geological Survey (USGS) Earth Resources Observation and Science (EROS) Center, has previously demonstrated the use of pseudo-invariant ground sites for the long-term stability monitoring of Terra MODIS and Landsat 7 ETM+ sensors. This paper focuses on the results derived from observations made over the Sonoran Desert. Additionally, Landsat 5 TM data over the Sonoran Desert site were used to evaluate the temporal stability of this site. Top-ofatmosphere (TOA) reflectances were computed for the closely matched TM, ETM+, and MODIS spectral bands over selected regions of interest. The impacts due to different viewing geometries, or the effect of test site Bi-directional Reflectance Distribution Function (BRDF), are also presented. ?? 2009 SPIE.

Conference Paper↗

USGS2012

SYBR green-based real-time reverse transcription-PCR for typing and subtyping of all hemagglutinin and neuraminidase genes of avian influenza viruses and comparison to standard serological subtyping tests

Continuing outbreaks of H5N1 highly pathogenic (HP) avian influenza virus (AIV) infections of wild birds and poultry worldwide emphasize the need for global surveillance of wild birds. To support the future surveillance activities, we developed a SYBR green-based, real-time reverse transcriptase PCR (rRT-PCR) for detecting nucleoprotein (NP) genes and subtyping 16 hemagglutinin (HA) and 9 neuraminidase (NA) genes simultaneously. Primers were improved by focusing on Eurasian or North American lineage genes; the number of mixed-base positions per primer was set to five or fewer, and the concentration of each primer set was optimized empirically. Also, 30 cycles of amplification of 1:10 dilutions of cDNAs from cultured viruses effectively reduced minor cross- or nonspecific reactions. Under these conditions, 346 HA and 345 NA genes of 349 AIVs were detected, with average sensitivities of NP, HA, and NA genes of 10 1.5 , 10 2.3 , and 10 3.1 50% egg infective doses, respectively. Utility of rRT-PCR for subtyping AIVs was compared with that of current standard serological tests by using 104 recent migratory duck virus isolates. As a result, all HA genes and 99% of the NA genes were genetically subtyped, while only 45% of HA genes and 74% of NA genes were serologically subtyped. Additionally, direct subtyping of AIVs in fecal samples was possible by 40 cycles of amplification: approximately 70% of HA and NA genes of NP gene-positive samples were successfully subtyped. This validation study indicates that rRT-PCR with optimized primers and reaction conditions is a powerful tool for subtyping varied AIVs in clinical and cultured samples.

Journal of Clinical Microbiology↗

USGS2000

Superposed fold-thrust events at the Nevada Test Site

The Nevada Test Site (NTS), in southern Nye County, Nevada, straddles significant pre-Tertiary structural and stratigraphic boundaries. Detailed stratigraphy and biostratigraphy of the Upper Paleozoic section delineates the regional trust sheets and constrains their burial histories. The Paleozoic rocks record three phases of contractional deformation, overprinted by strike-slip faulting. These occurred in the folloing order: (1) foreland-vergant folding and imbricate thrusting in the footwall of the Belted Range thrust; (2) hinterland-vergent folding and thrusting; and (3) north-vergant folding that we interpret as footwall deformation below a third major thrust system. Sinistral slip, typically accompanied by minor east-west shortening, has occurred along a series of north-northeast--north-northwest--striking faults around Yucca Flat. This strike-slip faulting postdates both foreland-vergent and hinterland-vergent deformation, and predates the Cretaceous Climax stock; its age relative to the north-vergent folding and thrusting is unknown. Our new understanding of the geometry of these structures provides new insights into the correlation and interpretation of regional structural features. Field trip stops will examine: (1) the stratigraphic differences that allow us to distinguish the regional thrust sheets and constrain their burial histories; and (2) the field relationships that document the kinematics and relative ages of the penetrative deformational events.

Nevada↗

USGS2013

Testing the use of microfossils to reconstruct great earthquakes at Cascadia

Coastal stratigraphy from the Pacific Northwest of the United States contains evidence of sudden subsidence during ruptures of the Cascadia subduction zone. Transfer functions (empirical relationships between assemblages and elevation) can convert microfossil data into coastal subsidence estimates. Coseismic deformation models use the subsidence values to constrain earthquake magnitudes. To test the response of foraminifera, the accuracy of the transfer function method, and the presence of a pre-seismic signal, we simulated a great earthquake near Coos Bay, Oregon, by transplanting a bed of modern high salt-marsh sediment into the tidal flat, an elevation change that mimics a coseismic subsidence of 0.64 m. The transplanted bed was quickly buried by mud; after 12 mo and 5 yr, we sampled it for foraminifera. Reconstruction of the simulated coseismic subsidence using our transfer function was 0.61 m, nearly identical to the actual elevation change. Our transplant experiment, and additional analyses spanning the A.D. 1700 earthquake contact at the nearby Coquille River 15 km to the south, show that sediment mixing may explain assemblage changes previously interpreted as evidence of pre-seismic land-level change in Cascadia and elsewhere.

Geology↗

USGS2021

Testing models of Laramide orogenic initiation by investigation of Late Cretaceous magmatic-tectonic evolution of the central Mojave sector of the California arc

The Mojave Desert region is in a critical position for assessing models of Laramide orogenesis, which is hypothesized to have initiated as one or more seamounts subducted beneath the Cretaceous continental margin. Geochronological and geochemical characteristics of Late Cretaceous magmatic products provide the opportunity to test the validity of Laramide orogenic models. Laramide-aged plutons are exposed along a transect across the Cordilleran Mesozoic magmatic system from Joshua Tree National Park in the Eastern Transverse Ranges eastward into the central Mojave Desert. A transect at latitude ∼33.5°N to 34.5°N includes: (1) the large upper-crustal Late Cretaceous Cadiz Valley batholith, (2) a thick section of Proterozoic to Jurassic host rocks, (3) Late Cretaceous stock to pluton-sized bodies at mesozonal depths, and (4) a Jurassic to Late Cretaceous midcrustal sheeted complex emplaced at ∼20 km depth that transitions into a migmatite complex truncated along the San Andreas fault. This magmatic section is structurally correlative with the Big Bear Lake intrusive suite in the San Bernardino Mountains and similar sheeted rocks recovered in the Cajon Pass Deep Scientific Drillhole. Zircon U-Pb geochronology of 12 samples via secondary ionization mass spectrometry (SIMS) (six from the Cadiz Valley batholith and six from the Cajon Pass Deep Scientific Drillhole) indicates that all Cretaceous igneous units investigated were intruded between 83 and 74 Ma, and Cajon Pass samples include a Jurassic age component. A compilation of new and published SIMS geochronological data demonstrates that voluminous magmatism in the Eastern Transverse Ranges and central Mojave Desert was continuous throughout the period suggested for the intersection and flat-slab subduction of the Shatsky Rise conjugate deep into the interior of western North America. Whole-rock major-element, trace-element, and isotope geochemistry data from samples from a suite of 106 igneous rocks represent the breadth of Late Cretaceous units in the transect. Geochemistry indicates an origin in a subduction environment and intrusion into a crust thick enough to generate residual garnet. The lack of significant deflections of compositional characteristics and isotopic ratios in igneous products through space and time argues against a delamination event prior to 74 Ma. We argue that Late Cretaceous plutonism from the Eastern Transverse Ranges to the central Mojave Desert represents subduction zone arc magmatism that persisted until ca. 74 Ma. This interpretation is inconsistent with the proposed timing of the docking of the Shatsky Rise conjugate with the margin of western North America, particularly models in which the leading edge of the Shatsky Rise was beneath Wyoming at 74 Ma. Alternatively, the timing of cessation of plutonism precedes the timing of the passage of the Hess Rise conjugate beneath western North America at ca. 70–65 Ma. The presence, geochemical composition, and age of arc products in the Eastern Transverse Ranges and central Mojave Desert region must be accounted for in any tectonic model of the transition from Sevier to Laramide orogenesis.

California↗

USGS2020

Latitudinal variation in snowshoe hare (Lepus americanus) body mass: A test of Bergmann’s Rule

The relationship between body size and latitude have been the focus of dozens of studies across many species. However, results of testing Bergmann’s Rule – that organisms in colder climates or at higher latitudes possess larger body sizes – have been inconsistent across studies. We investigated whether snowshoe hares (Lepus americanus) follow the Rule by investigating differences in body mass using data from six published studies and from data of 755 individual hares captured from ten populations across North America covering 26° of latitude. We also explored alternative hypotheses related to variation in hare body mass, including winter severity, length of growing season, elevation, and snow depth. We found body mass of hares varied throughout their range, but the drivers of body mass differed based on geographic location. Females in northern populations followed Bergmann’s rule, whereas males did not. In northern populations male mass was related to average snow depth. In contrast, in southern populations body mass of both sexes was related to length of the growing season. These differences likely represent variation in the drivers of selection. Specifically, in the north, a large body size is beneficial to conserve heat because of low winter temperatures, whereas in the south, it is likely due to increased food supply associated with longer growing seasons.

Canadian Journal of Zoology↗

USGS2011

Testing a bioenergetics-based habitat choice model: bluegill ( Lepomis macrochirus ) responses to food availability and temperature

Using an automated shuttlebox system, we conducted patch choice experiments with 32, 8–12&ensp;g bluegill sunfish ( Lepomis macrochirus ) to test a behavioral energetics hypothesis of habitat choice. When patch temperature and food levels were held constant within patches but different between patches, we expected bluegill to choose patches that maximized growth based on the bioenergetic integration of food and temperature as predicted by a bioenergetics model. Alternative hypotheses were that bluegill may choose patches based only on food (optimal foraging) or temperature (behavioral thermoregulation). The behavioral energetics hypothesis was not a good predictor of short-term (from minutes to weeks) patch choice by bluegill; the behavioral thermoregulation hypothesis was the best predictor. In the short-term, food and temperature appeared to affect patch choice hierarchically; temperature was more important, although food can alter temperature preference during feeding periods. Over a 19-d experiment, mean temperatures occupied by fish offered low rations did decline as predicted by the behavioral energetics hypothesis, but the decline was less than 1.0 °C as opposed to a possible 5 °C decline. A short-term, bioenergetic response to food and temperature may be precluded by physiological costs of acclimation not considered explicitly in the behavioral energetics hypothesis.

Canadian Journal of Fisheries and Aquatic Sciences↗

USGS2011

A bayesian approach for determining velocity and uncertainty estimates from seismic cone penetrometer testing or vertical seismic profiling data

Conventional processing methods for seismic cone penetrometer data present several shortcomings, most notably the absence of a robust velocity model uncertainty estimate. We propose a new seismic cone penetrometer testing (SCPT) data-processing approach that employs Bayesian methods to map measured data errors into quantitative estimates of model uncertainty. We first calculate travel-time differences for all permutations of seismic trace pairs. That is, we cross-correlate each trace at each measurement location with every trace at every other measurement location to determine travel-time differences that are not biased by the choice of any particular reference trace and to thoroughly characterize data error. We calculate a forward operator that accounts for the different ray paths for each measurement location, including refraction at layer boundaries. We then use a Bayesian inversion scheme to obtain the most likely slowness (the reciprocal of velocity) and a distribution of probable slowness values for each model layer. The result is a velocity model that is based on correct ray paths, with uncertainty bounds that are based on the data error.

Canadian Geotechnical Journal↗

USGS1986

In situ and laboratory geotechnical tests of the Pierre Shale near Hayes, South Dakota — A characterization of engineering behavior

A geotechnical investigation of the Pierre Shale near Hayes, South Dakota, was conducted by the U.S. Geological Survey as a basis for evaluating problems in deep excavations into that formation. The physical and mechanical properties of the shale were determined through use of core holes drilled to a maximum depth of 184 m. In situ borehole determinations included a gravimeter survey, pressuremeter testing, thermal profile measurements, and borehole velocity measurements. Onsite and offsite laboratory measurements included rebound measurements, sonic velocity measurements of shear and primary waves, X-ray mineralogy and major element determinations, size analyses, fracture analyses, fabric analyses, and determination of thermal properties.Below 15–22 m, the shale is an unweathered, saturated, overconsolidated, underpressured clay shale with a clay-mineral content ranging between 50 and 100%, dominantly composed of mixed-layer illitic smectites. The physical and mechanical properties vary widely. The variation is related to the clay mineral content (especially in bentonite zones), a large transverse mechanical anisotropy, and zones of fractures and microfractures, which may result from rebound caused by erosion. These may contribute to slope instability over large areas. The thermal and mechanical properties change markedly if the shale is permitted to dry out. The state of stress and overconsolidation appear to be functions of the depositional and erosional history of the deposit. Both are markedly affected by the large fracture zones. The properties of the clay shale indicate problems that may be encountered in excavation and use of deep underground facilities. Key words : anisotropy, characterization, clay shale, consolidation state, physical properties, rebound, relaxation, stress state, thermal properties.

South Dakota↗

USGS1991

Testing the Wildlink activity-detection system on wolves and white-tailed deer

We tested the reliability and predictive capabilities of the activity meter in the new Wildlink Data Acquisition and Recapture System by comparing activity counts with concurrent observations of captive wolf (Canis lupus) and free-ranging white-tailed deer (Odocoileus virginianus) activity. The Wildlink system stores activity data in a computer within a radio collar with which a biologist can communicate. Three levels of activity could be detected. The Wildlink system provided greater activity discrimination and was more reliable, adaptable, and efficient and was easier to use than conventional telemetry activity systems. The Wildlink system could be highly useful for determining wildlife energy budgets.

Canadian Journal of Zoology↗

USGS2021

DAS 3DVSP survey at Stratigraphic Test Well (Hydrate-01)

This proceeding outlines the acquisition, processing, and fault interpretation of the largest known onshore distributed acoustic sensing (DAS) 3D vertical seismic profile (VSP) survey. This survey was carried out to detect the distribution of faults near the gas hydrate research well (Stratigraphic Test Well: Hydrate-01) on the North Slope of Alaska within the Prudhoe Bay Unit (PBU). The data were recorded with a single-mode DAS cable which is permanently installed and cemented behind the casing of the Hydrate-01 well. A total of 1701 shot records were successfully acquired in 12 days using a DAS interrogator with two vibroseis sources. The data were converted from strain rate to a geophone equivalent for further data processing. Traveltime tomography was carried out using the first break of each shot and was used to build a 3D tilted transverse isotropy (TTI) velocity model. The data were processed with a sequence designed to produce a precise and high resolution P wave image, that included editing, redatum, band pass filtering, denoise, upgoing / downgoing wavefield separation, deconvolution and migration. Faults around the Hydrate-01 were interpreted using the 3DVSP volume and its attributes. These faults were clearly observed in the 3DVSP volume but they cannot be recognized by an existing 3D surface seismic volume.

Conference Paper↗

USGS2019

Variability in results from mineralogical and organic geochemical interlaboratory testing of U. S. Geological Survey shale reference materials

The expansion of unconventional petroleum resource exploration and production in the United States has led to an increase in source rock characterization efforts, particularly related to bulk organic and mineralogical properties. To support the analytical and research needs of industry and academia, as well as internal work, the U.S. Geological Survey (USGS) has collected and prepared shale geochemical reference materials (GRMs) from several major shale petroleum systems in the U.S. The sources of these materials are the Late Cretaceous Boquillas (lower Eagle Ford-equivalent) Formation (roadcut near Del Rio, TX), Late Cretaceous Mancos Shale (outcrop near Delta, CO), Devonian–Mississippian Woodford Shale (outcrop near Ardmore, OK), Late Cretaceous Niobrara Formation (quarry near Lyons, CO), Middle Devonian Marcellus Shale (creek bed in LeRoy, NY), and Eocene Mahogany zone oil shale of the Green River Formation (oil shale mine near Rifle, CO). Of particular interest in the development of these GRMs has been the examination of variability between laboratories and specific methods or instruments in commonly made measurements, including major- and trace-element concentrations, X-ray diffraction (XRD) mineralogy, total organic carbon (TOC) content, and programmed pyrolysis (PP) parameters. For the component concentrations and parameters we measured, the techniques and instrument types included: (1) elemental analysis by X-ray fluorescence, inductively coupled plasma mass spectrometry, and instrumental neutron activation analysis; (2) XRD mineralogy with various preparatory methods (spray drying or micronizing with or without internal standard); (3) TOC by combustion with infrared detection after carbonate removal or the PP approach; (4) PP by Rock-Eval 2 or more recently developed instruments (Rock-Eval 6, Source Rock Analyzer or SRA, and Hydrocarbon Analyzer With Kinetics or HAWK). Overall, the results showed that the selected shales cover a wide range of source rock organic and mineralogical properties. Major- and trace-element chemistry results showed low heterogeneity consistent with other USGS GRMs. Comparison of TOC results showed coefficients of variation (COV) of around 5% and the most consistent organic geochemical results between different laboratories and methods. Arguably the most relevant PP measurement, S2 or kerogen hydrocarbon-generating potential (mg-HC/g-rock), showed a somewhat wider range of variability than TOC (COV ~10%), but was consistent between the three modern instruments and the industry-standard Rock-Eval 2. Major phase mineralogy (mineral concentrations ≥10 wt. %, organic-free basis) were comparable between laboratories, but variability in minor phase identification and quantification was observed. Utilization of these shale GRMs as quality control samples and testing materials is expected to help support analytical and experimental efforts in the continued development of unconventional petroleum resources.

Colorado, Texas, Oklahoma↗

USGS1940

Formalin treatments pass new tests. Additional notes on the control of ecto-parasitic protozoa

After the completion of the eхреriments reported recently, in which the efficacy of formalin in controlling infections of Gostia mecatr ix was demonstrated, the author was afforded an opportunity to test the value of formalin solutions in combatting established mixed infections of ( Gyrodactylus, Tricbodina, Cyclochaeta ) and a stalked protozoan on rainbow trout fingerlings. This opportunity was provided through the courtesy and cooperation of Clarence F. Pautzke, Chief Biologist for the Washington State Game Department, and Lee Walters, Superintendent of the Washington State Hatchery at Seward Park, Seattle.

Progressive Fish-Culturist↗

USGS1959

Test of 34 therapeutic agents for control of kidney disease in trout

Sixteen strains of fish kidney disease bacterium were tested in vitro to determine their reaction to 34 therapeutic agents. On the basis of the results obtained ten of the drugs were employed in experimental therapy of kidney disease in eastern brook trout (Salvelinus fontinalis). Erythromycin at the rate of 100 milligrams per kilogram of fish per day (4.5 grams per 100 pounds of fish) for 21 days gave the best results. Other drugs gave only temporary benefit if any.

Transactions of the American Fisheries Society↗