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USGS2016

Feline immunodeficiency virus cross-species transmission: Implications for emergence of new lentiviral infections

Owing to a complex history of host-parasite coevolution, lentiviruses exhibit a high degree of species specificity. Given the well-documented viral archeology of HIV emergence following human exposures to SIV, understanding processes that promote successful cross-species lentiviral transmissions is highly relevant. We have previously reported natural cross-species transmission of a subtype of feline immunodeficiency virus, puma lentivirus A (PLVA), between bobcats ( Lynx rufus ) and mountain lions ( Puma concolor ) in a small number of animals in California and Florida. In this study we investigate host-specific selection pressures, within-host viral fitness, and inter- vs. intra-species transmission patterns among a larger collection of PLV isolates from free-ranging bobcats and mountain lions. Analysis of proviral and viral RNA levels demonstrates that PLVA fitness is severely restricted in mountain lions compared to bobcats. We document evidence of diversifying selection in three of six PLVA genomes from mountain lions, but did not detect selection among twenty PLVA isolates from bobcats. These findings support that PLVA is a bobcat-adapted virus, which is less fit in mountain lions and under intense selection pressure in the novel host. Ancestral reconstruction of transmission events reveals intraspecific PLVA transmission has occurred among panthers ( Puma concolor coryi ) in Florida following initial cross-species infection from bobcats. In contrast, interspecific transmission from bobcats to mountain lions predominates in California. These findings document outcomes of cross-species lentiviral transmission events among felids that compare to emergence of HIV from nonhuman primates. IMPORTANCE Cross-species transmission episodes can be singular, dead-end events or can result in viral replication and spread in the new species. The factors that determine which outcome will occur are complex, and the risk of new virus emergence is therefore difficult to predict. Here we use molecular techniques to evaluate transmission, fitness, and adaptation of puma lentivirus A (PLVA) between bobcats and mountain lions in two geographic regions. Our findings illustrate that mountain lion exposure to PLVA is relatively common, but does not routinely result in infections communicable in the new host. This is attributed to efficient species barriers that largely prevent lentiviral adaptation. However, the evolutionary capacity for lentiviruses to adapt to novel environments may ultimately overcome host restriction mechanisms over time and under certain ecological circumstances. This phenomenon provides a unique opportunity to examine cross-species transmission events leading to new lentiviral emergence.

California, Florida↗

USGS2014

Volcanology: Lessons learned from Synthetic Aperture Radar imagery

Twenty years of continuous Earth observation by satellite SAR have resulted in numerous new insights into active volcanism, including a better understanding of subsurface magma storage and transport, deposition of volcanic materials on the surface, and the structure and development of volcanic edifices. This massive archive of data has resulted in fundamental leaps in our understanding of how volcanoes work – for example, identifying magma accumulation at supposedly quiescent volcanoes, even in remote areas or in the absence of ground-based data. In addition, global compilations of volcanic activity facilitate comparison of deformation behavior between different volcanic arcs and statistical evaluation of the strong link between deformation and eruption. SAR data are also increasingly used in timely hazard evaluation thanks to decreases in data latency and growth in processing and analysis techniques. The existing archive of SAR imagery is on the cusp of being enhanced by a new generation of satellite SAR missions, in addition to ground-based and airborne SAR systems, which will provide enhanced temporal and spatial resolution, broader geographic coverage, and improved availability of data to the scientific community. Now is therefore an opportune time to review the contributions of SAR imagery to volcano science, monitoring, and hazard mitigation, and to explore the future potential for SAR in volcanology. Provided that the ever-growing volume of SAR data can be managed effectively, we expect the future application of SAR data to expand from being a research tool for analyzing volcanic activity after the fact, to being a monitoring and research tool capable of imaging a wide variety of processes on different temporal and spatial scales as those processes are occurring. These data can then be used to develop new models of how volcanoes work and to improve quantitative forecasts of volcanic activity as a means of mitigating risk from future eruptions.

Journal of Volcanology and Geothermal Research↗

USGS2013

Probabilistic analysis showing that a combination of bacteroides and methanobrevibacter source tracking markers is effective for identifying waters contaminated by human fecal pollution

Microbial source tracking assays to identify sources of waterborne contamination typically target genetic markers of host-specific microorganisms. However, no bacterial marker has been shown to be 100% host-specific, and cross-reactivity has been noted in studies evaluating known source samples. Using 485 challenge samples from 20 different human and animal fecal sources, this study evaluated microbial source tracking markers including the Bacteroides HF183 16S rRNA, M. smithii nifH, and Enterococcus esp gene targets that have been proposed as potential indicators of human fecal contamination. Bayes' Theorem was used to calculate the conditional probability that these markers or a combination of markers can correctly identify human sources of fecal pollution. All three human-associated markers were detected in 100% of the sewage samples analyzed. Bacteroides HF183 was the most effective marker for determining whether contamination was specifically from a human source, and greater than 98% certainty that contamination was from a human source was shown when both Bacteroides HF183 and M. smithii nifH markers were present. A high degree of certainty was attained even in cases where the prior probability of human fecal contamination was as low as 8.5%. The combination of Bacteroides HF183 and M. smithii nifH source tracking markers can help identify surface waters impacted by human fecal contamination, information useful for prioritizing restoration activities or assessing health risks from exposure to contaminated waters.

Environmental Science & Technology↗

USGS2022

Identifying translocation sites for a climate relict population of Finescale Dace

Translocation is a management strategy that seeks to address threats to fish and wildlife populations by establishing new populations in ecologically suitable areas. Populations of Finescale Dace Chrosomus neogaeus in the Great Plains may benefit from translocation, as they exhibit a climate relict natural history that has led to a disjunct distribution and minimal dispersal opportunities. We assessed the translocation suitability of sites for Finescale Dace in the Belle Fourche River basin, Wyoming–South Dakota, using a ranking approach for output from multiple analyses. We used multivariate analysis to evaluate dissimilarity in fish occurrence and habitat between sites with and without Finescale Dace in contemporary surveys (2018–2019; n = 68). We further evaluated the capacity for sites to support Finescale Dace under base case and future climate change scenarios using the predicted probability of occurrence ( P ) from species distribution models (SDMs) fitted with basinwide fish occurrence data from surveys conducted in 2008–2019 ( n = 124) and spatially continuous environmental variables, including forecasted stream temperature scenarios. Sites with Finescale Dace tended to occur close to standing waterbodies, contained emergent vegetation cover, and did not exhibit large overlap in species-space with either native or nonnative species. Predicted P of Finescale Dace exhibited nonlinear relationships with mean August stream temperature, channel slope, and base flow index. The amount of suitable habitat (i.e., high predicted P ) declined with forecasted stream warming scenarios in the SDMs. This study highlights the utility of using field observations, historical data, and forecasted climate change scenarios to assess translocation site suitability and inform management of at-risk native fish populations, and the results may be transferable to other populations with limited data or restricted distributions.

South Dakota, Wyoming↗

USGS2025

Hysteretic response of suspended-sediment in wildfire affected watersheds of the Pacific Northwest and Southern Rocky Mountains

Wildfires can have a profound impact on hydrosedimentary interactions, or the relationship between sediment and runoff, in forested headwater streams. Quantification of sediment-runoff dynamics at the event scale is integral for understanding source areas and transport of suspended-sediment through a watershed following wildfire. Here we used high-frequency turbidity and stream discharge data, coupled with discrete suspended-sediment measurements, in burned and unburned watersheds in the Southern Rocky Mountains and the western Cascades Range to evaluate the response of fine-grained (clay- and silt-sized particles) suspended-sediment. Hysteresis analysis was conducted on estimated suspended-sediment concentrations (using turbidity as a proxy) and streamflow through measurement of the difference in sediment concentration on the rising and falling limbs of the event hydrograph. All burned watersheds exhibited elevated fine suspended-sediment concentrations relative to concentrations found in pre-fire conditions. Changes to hysteretic response vary and may depend on a watershed's sediment connectivity limitations. Results suggest a watershed's inherent hillslope-to-channel (or lateral) connectivity is the primary factor controlling the relative magnitude of event-driven fine sediment fluxes in watersheds affected by wildfire. While wildfire did promote lateral connectivity through activation of hillslope sources, snowmelt, precipitation characteristics and antecedent conditions were more important drivers of hysteretic response than wildfire. For watersheds influenced by annual snowpack, we identified a predominantly clockwise hysteretic response during snowmelt and counterclockwise events during the late spring and summer months. There were also proportionally more counterclockwise events after wildfire in watersheds with high sediment connectivity. Results suggest contrasting wildfire-related sediment risk potential. Rivers in burned watersheds with high sediment connectivity may pose a higher risk to receiving waterbodies, such as larger tributaries or reservoirs, while rivers with low sediment connectivity may experience long-term sediment-related risk within the watershed above the outlet.

Oregon↗

USGS2001

Crustal deformation rates in Central and Eastern U.S. inferred from GPS

Analysis of continuous GPS observations between 1996 and 2000 at 62 stations distributed throughout the central and eastern United States suggests that the area is generally stable. Seven of the 62 stations show anomalous velocities, but there is reason to suspect their monument stability. Assuming the remaining 55 stations are stable with respect to interior North America, we have found the North America-ITRF97 Euler vector (-1.88 o ± 1.04 o N, 77.67 o ± 0.39 o W, 0.201 o ± 0.004 o Myr -1 ) that minimizes the RMS station velocity. Referred to fixed North America, all of these velocities are less than 3.2 mm yr-1. Motion of several stations suggests the Mississippi embayment may be moving southward away from the rest of the continent at a rate of 1.7±0.9 mm yr -1 . The motion of the embayment produces a large gradient in velocity which, in turn, implies the highest seismic moment accumulation rate that we found. Although the highest rate is only marginally significant, the fact that it occurs near New Madrid, where earthquake risk is thought to be high, argues that the anomaly may be real. Nevertheless, the identification of the anomaly remains tentative.

Geophysical Research Letters↗

USGS2015

Chemical mixtures and environmental effects: a pilot study to assess ecological exposure and effects in streams

Assessment and management of the risks of exposure to complex chemical mixtures in streams are priorities for human and environmental health organizations around the world. The current lack of information on the composition and variability of environmental mixtures and a limited understanding of their combined effects are fundamental obstacles to timely identification and prevention of adverse human and ecological effects of exposure. This report describes the design of a field-based study of the composition and biological activity of chemical mixtures in U.S. stream waters affected by a wide range of human activities and contaminant sources. The study is a collaborative effort by the U.S. Geological Survey and the U.S. Environmental Protection Agency. Scientists sampled 38 streams spanning 24 States and Puerto Rico. Thirty-four of the sites were located in watersheds impacted by multiple contaminant sources, including industrial and municipal wastewater discharges, crop and animal agricultural runoff, urban runoff, and other point and nonpoint contaminant sources. The remaining four sites were minimally development reference watersheds. All samples underwent comprehensive chemical and biological characterization, including sensitive and specific direct analysis for over 700 dissolved organic and inorganic chemicals and field parameters, identification of unknown contaminants (environmental diagnostics), and a variety of bioassays to evaluate biological activity and toxicity.

Open-File Report↗

USGS2006

Wildlife and habitat damage assessment from Hurricane Charley: Recommendations for recovery of the J. N. "Ding" Darling National Wildlife Refuge Complex

• On 13 August 2004, the first of four hurricanes to strike Florida in <6 weeks came ashore near J. N. “Ding” Darling National Wildlife Refuge (JNDDNWR) Complex, Sanibel Island, Florida. The eye of Category 4 Hurricane Charley passed just north of Sanibel Island with maximum sustained winds of 145 mph (123 knots) and a storm surge of 0.3-2.7 m (1-9 ft). Three USGS-BRD scientists (coastal ecologist and research wildlife biologists) and a USFWS wildlife biologist surveyed the storm damage to JNDDNWR Complex on the ground from 20-24 September 2004. • At the request of United States Fish and Wildlife Service refuge staff, the USGS team concentrated on assessing damage to wetlands and habitat for selected bird populations (especially mangrove forests, Mangrove Cuckoos [Coccyzus minor], and Black-whiskered Vireo [Vireo altiloquus]), waterbird rookeries (mangrove islands), impoundments (waterbirds and waterfowl), sea grass beds (manatees), and upland hardwood hammocks and ridges (threatened eastern indigo snake [Drymarchon couperi]). • The refuge complex sustained moderate to catastrophic damage to vegetation, especially mangrove forests and waterbird nesting or roosting islands. Lumpkin Island, Hemp Island, and Bird Key waterbird nesting areas had >50% and sometimes 90% of their vegetation severely damaged (dead, broken tree stems, and tipped trees). The Shell Mound Trail area of JNDDNWR sustained catastrophic damage to its old growth mangrove forests. Direct storm mortality and injury to manatees in the area of the JNDDNWR Complex was probably slight as manatees may have several strategies to reduce storm mortality. Damage to seagrass beds, an important habitat for manatees, fishes and invertebrates, is believed to be limited to the breach at North Captiva Island. At this breach, refuge staff documented inundation of beds by sand and scarring by trees dragged by winds. • Because seagrass beads and manatee habitat extend beyond refuge boundaries (see p. 28), a regional approach with partner agencies to more thoroughly assess storm impacts and monitor recovery of seagrass and manatees is recommended. • Besides intensive monitoring of waterbirds and their nesting habitat (pre- and post-storm), the survey team recommends that the Mangrove Cuckoo be used as an indicator species for recovery of mangrove forests and also for monitoring songbirds at risk (this songbird is habitat-area sensitive). Black-whiskered Vireo may be another potential indicator species to monitor in mangrove forests. Monitoring for these species can be done by distance sampling on transects or by species presenceabsence from point counts. • Damaged vegetation should be monitored for recovery (permanent or long-term plots), especially where previous study plots have been established and with additional plots in mangrove forests of waterbird nesting islands and freshwater wetlands. • Potential loss of wetlands (and information for management) may be prevented by water level monitoring (3 permanent stations), locating the positions (GPS-GIS) and maintaining existing water control structures, creating a GIS map of the refuge with accurate vertical data, and monitoring and eradicating invasive plants. Invasive species, including Brazilian pepper (Schinus terebinthifolius) and air potato (Dioscorea bulbifora), were common in a very limited survey and may become more dominant in areas damaged by the storm. Special attention is needed to eradicate these exotic plants. • As an important monitoring goal, the survey team recommends that species presence-absence data analysis (with probability of detection) be used to determine changes in animal communities. This could be accomplished possibly with comparison to other storm-damaged and undamaged refuges in the Region. This information may be helpful to refuge managers when storms return in the future.

Florida↗

USGS2024

Watershed hydrology assessment for the Lower Colorado River Basin. Appendix D: RiverWare analyses

RiverWare is a river system modeling tool developed by CADSWES (Center of Advanced Decision Support for Water and Environmental Systems) that allows the user to simulate complex reservoir operations and perform period-of-record analyses for different scenarios. For the InFRM hydrology studies, RiverWare is used to generate a homogeneous regulated POR by simulating the basin as if the reservoirs and their current rule sets had been present in the basin for the entire time period. Statistical analyses can then be performed on the extended records at the gages. This report summarizes the RiverWare portion of the hydrologic analysis being completed for the InFRM Hydrology study of the Colorado River Basin. The RiverWare model described in this chapter presents development of the Colorado River Basin hydrology, which mimics current operational conditions. The use of the RiverWare program allows for data extension to periods prior to dam construction. The utilization of longer gage record improves discharge frequency results and increases the confidence of the analysis being performed. The modeling evaluation criteria are: (1) evaluate output based on validating policies and functions, and (2) prioritize operation based on surcharge and flood control. A detailed explanation of the Colorado River Basin POR hydrology will be in a later section. Calibration results will also be shown that illustrate the overall model performance for the POR. The time window simulation run is for January 01, 1930 – September 30, 2019. This time window captures all big events occurred over the Colorado River basin. Each simulated water year was inspected individually to better validate the results. Historical pool elevations along with observed inflows and outflows were compared against the model simulated results.

Texas↗

USGS2007

Understanding knowledge and perceptions of bats among residents of Fort Collins, Colorado

As regional urbanization increases in Colorado, so do interactions between humans and wildlife. Where previous habitat has been reduced due to urbanization and development, a few bat species that easily adapt to new environments now roost in homes and buildings (Kunz and Reynolds, 2003). Bats frequently serve as reservoirs of disease that have potential health consequences for humans and other mammals (Messenger and others, 2003). As bat use of buildings becomes more frequent, the incidences of bat/human contact and the risk of spreading disease also increase. In Colorado, rabies is most common in the big brown bat (Eptesicus fuscus) Pape and others, 1999), the most ubiquitous species of urban-dwelling bat in the United States (Barbour and Davis, 1969) and the most common species submitted for rabies testing in Colorado (Pape and others, 1999). An in-depth knowledge of the big brown bat - including its ecology, habitat and movements, and aspects of disease transmission - and of its interactions with humans is essential for making informed management decisions regarding this species. To balance the competing priorities of species preservation and public safety, natural resource managers and public health professionals must be able to accurately estimate citizens' knowledge, perceptions, and perceived risks regarding the bat species that use human dwellings and harbor diseases potentially dangerous to humans. A recently completed five-year ecological study (2001-2005) on bats inhabiting buildings in Fort Collins, Colo., has provided much information on the basic epidemiology of rabies and on the ecology of the local bat population (Davis, Rudd, and Bowen, 2007; Ellison and others, 2007; Neubaum, Douglas, and others, in press; Neubaum, O'Shea, and Wilson, 2006; Neubaum, Wilson, and O'Shea, 2007; O'Shea, Ellison, and Stanley, 2004; Pearce and O'Shea, 2007; Pearce and others, in press; Shankar and others, 2004; Shankar and others, 2005; Wimsatt and others 2005). Research investigating the human dimensions of bats and bat/rabies relationships, however, has been very limited (Gibbins and others, 2002; Liesener and others, 2006). Herein, we report the results of a study to evaluate perceptions and knowledge of bats and rabies among residents of Fort Collins, Colo. The study resulted from collaborations between U.S. Geological Survey (USGS) bat ecologists of the Trust Species and Habitats branch, and social scientists of the Policy Analysis and Science Assistance branch, both of the USGS Fort Collins Science Center (FORT).

Open-File Report↗

USGS1989

Animal population dynamics: Identification of critical components

There is a growing interest in the use of population dynamics models in environmental risk assessment and the promulgation of environmental regulatory policies. Unfortunately, because of species and areal differences in the physical and biotic influences on population dynamics, such models must almost inevitably be both complex and species- or site-specific. Given the emormous variety of species and sites of potential concern, this fact presents a problem; it simply is not possible to construct models for all species and circumstances. Therefore, it is useful, before building predictive population models, to discover what input parameters are of critical importance to the desired output. This information should enable the construction of simpler and more generalizable models. As a first step, it is useful to consider population models as composed to two, partly separable classes, one comprising the purely mechanical descriptors of dynamics from given demographic parameter values, and the other describing the modulation of the demographic parameters by environmental factors (changes in physical environment, species interactions, pathogens, xenobiotic chemicals). This division permits sensitivity analyses to be run on the first of these classes, providing guidance for subsequent model simplification. We here apply such a sensitivity analysis to network models of mammalian and avian population dynamics.

Ecological Modelling↗

USGS2025

A spatial analysis of the groundwater emergence flood hazard in Long Island, New York and near coastal areas surrounding Long Island Sound in New York, Connecticut, and Rhode Island

Long Island, New York and near coastal areas surrounding Long Island Sound are densely populated and, like other coastal areas, are susceptible to flooding from several potential sources, including stormwater from precipitation events, tidal flooding and storm surge, and groundwater inundation or groundwater emergence flooding. The latter refers to the intersection of a rising water table with land surface or critical infrastructure. Many studies of flood drivers either neglect or only briefly discuss how shallow groundwater conditions may contribute to or exacerbate flood conditions. As part of a comprehensive study of compound flood hazards in the near coastal areas surrounding Long Island and Long Island Sound, a spatial analysis was completed, in cooperation with the Environmental Protection Agency’s Long Island Sound Study, using available regional datasets to characterize the potential hazard for groundwater emergence flooding. The approximately 3,100 square mile study area was subdivided into 11,407 900-meter by 900-meter (approximately 3,000-feet by 3,000-feet) grid cells, for the purposes of integrating the spatial datasets to calculate and map the groundwater emergence flood hazard. The depth to the water table, hydrologic soil groups, and National Land Cover Database were harmonized to the common grid. A groundwater emergence flood hazard rank was calculated for each grid cell for current average conditions following a set of rules accounting for the depth to the water table and the percent of area within each cell with slow infiltrating soils. A higher sea level position scenario was also calculated for the Long Island part of the study area. The calculated groundwater emergence flood hazard rank was reviewed in concert with the National Land Cover Data Base to identify developed areas and associated infrastructure that may be at risk to groundwater emergence flooding. Study results indicate that the groundwater emergence flood hazard is highest in coastal areas and near surface water where the water table is close to ground surface. Inland areas away from surface water bodies are not likely to be exposed to groundwater emergence flooding. For Long Island, under a scenario with higher sea level position, a greater groundwater emergence flood hazard is calculated in some locations closer to the coast and where land is submerged. Away from the coast and surface-water drainage, the groundwater emergence flood hazard is similar between the current average sea level condition and a higher sea level position scenario.

EarthArXiv↗

USGS2018

Resilience and resistance in sagebrush ecosystems are associated with seasonal soil temperature and water availability

Invasion and dominance of exotic grasses and increased fire frequency threaten native ecosystems worldwide. In the Great Basin region of the western United States, woody and herbaceous fuel treatments are implemented to decrease the effects of wildfire and increase sagebrush ( Artemisia spp.) ecosystem resilience to disturbance and resistance to exotic annual grasses. High cover of the exotic annual cheatgrass ( Bromus tectorum ) after treatments increases fine fuels, which in turn increases the risk of passing over a biotic threshold to a state of increased wildfire frequency and conversion to cheatgrass dominance. Sagebrush ecosystem resilience to wildfire and resistance to cheatgrass depend on climatic conditions and abundance of perennial herbaceous species that compete with cheatgrass. In this study, we used longer‐term data to evaluate the relationships among soil climate conditions, perennial herbaceous cover, and cheatgrass cover following fuel management treatments across the environmental gradients that characterize sagebrush ecosystems in the Great Basin. We examined the effects of woody and herbaceous fuel treatments on soil temperature, soil water availability (13–30 and 50 cm depths), and native and exotic plant cover on six sagebrush sites lacking piñon ( Pinus spp.) or juniper ( Juniperus spp.) tree expansion and 11 sagebrush sites with tree expansion. Both prescribed fire and mechanical treatments increased soil water availability on woodland sites and perennial herbaceous cover on some woodland and sagebrush sites. Prescribed fire also slightly increased soil temperatures and especially increased cheatgrass cover compared to no treatment and mechanical treatments on most sites. Non‐metric dimensional scaling ordination and decision tree partition analysis indicated that sites with warmer late springs and warmer and wetter falls had higher cover of cheatgrass. Sites with wetter winters and early springs (March–April) had higher cover of perennial herbs. Our findings suggest that site resistance to cheatgrass after fire and fuel control treatments decreases with a warmer and drier climate. This emphasizes the need for management actions to maintain and enhance perennial herb cover, such as implementing appropriate grazing management, and revegetating sites that have low abundance of perennial herbs in conjunction with fuel control treatments.

Ecosphere↗

USGS2022

Hydrology and water quality in 15 watersheds in DeKalb County, Georgia, 2012–16

The U.S. Geological Survey, in cooperation with DeKalb County Department of Watershed Management, established a long-term water-quantity and water-quality monitoring program in 2012 to monitor and analyze the hydrologic and water-quality conditions of 15 watersheds in DeKalb County, Georgia—an urban and suburban area located in north-central Georgia that includes the easternmost part of the City of Atlanta. This report synthesizes the watershed characteristics and monitoring data collected for the first 5 years of the program, 2012 through 2016. The study area was predominantly medium-density residential (43.9 percent), commercial/industrial/institutional (21.4 percent), forest/park/agriculture (13.6 percent), and high-density residential (11.5 percent) land uses. Land-surface slope averaged 8.7 percent, imperviousness averaged 25.3 percent, and population density averaged 2,936 people per square mile. Watershed imperviousness ranged from 8.7 to 36.6 percent. In the study area for 2014 to 2016 (when streamflow data were available for all watersheds), runoff represented 40.9 percent of precipitation. Hydrograph separations indicated that 43 percent of runoff occurred as base flow, whereas the remainder occurred as stormflow. Higher watershed imperviousness was significantly related to higher amounts of runoff (Pearson product-moment correlation coefficient [ r ] = 0.517), higher runoff ratios ( r = 0.646), and lower amounts ( r = −0.637) and proportions ( r = −0.898) of base-flow runoff. Stormwater best management practices have been implemented in the study watersheds; however, these practices do not appear to fully mitigate the effects of urban development and land use on stream hydrology. Total copper, lead, and zinc concentrations in base-flow and stormflow samples exceeded the national recommended aquatic life criteria for chronic and acute conditions, respectively, to varying degrees. Escherichia coli density predictive regression models indicated that the U.S. Environmental Protection Agency’s Beach Action Value was exceeded at individual watersheds between 44.6 and 100 percent of the time. Exceedance of the Beach Action Value indicates possible unsafe conditions for primary contact recreation and could be used for timely notification of the potential health risks. Annual loads and yields were estimated for 15 constituents. Loads were typically higher for years with higher runoff while variations among watershed yields appear associated with watershed and land use characteristics. The lowest yields for almost all constituents occurred in the Stone Mountain Creek watershed—likely the result of the retention of sediment and reduction of nutrients in Stone Mountain Lake and two smaller downstream reservoirs within the watershed. The Little Stone Mountain Creek watershed also had some of the lowest yields for most constituents, likely due to the lack of many pollutant sources associated with its predominantly medium-density residential land use (95.5 percent), but had the highest total nitrate plus nitrite yields. The Intrenchment Creek watershed consistently had some of the highest yields across all constituents except for total nitrate plus nitrite. The high yields may be related to its high percentage of impervious area (36.0 percent) and high amount of heavily developed land use (high-density residential, 29.9 percent and commercial/industrial/institutional, 26.0 percent). Mean watershed constituent yields in this study were significantly higher than those from a similar analysis of 13 suburban to urban watersheds in adjacent Gwinnett County for 6 of the 10 constituents compared. This study provides a thorough assessment of watershed characteristics, hydrology, and water-quality conditions of the 15 study watersheds and can be used to identify possible factors that affect runoff and water quality. Watershed managers can use these data and analyses to inform management decisions regarding the designated uses of streams, minimization of flooding, protection of aquatic habitats, and optimization of the effectiveness of best management practices.

Georgia↗

USGS2024

Increasing seasonal variation in the extent of rivers and lakes from 1984 to 2022

Knowledge of the spatial and temporal distribution of surface water is important for water resource management, flood risk assessment, monitoring ecosystem health, constraining estimates of biogeochemical cycles and understanding our climate. While global-scale spatiotemporal change detection of surface water has significantly improved in recent years due to planetary-scale remote sensing and computing, it has remained challenging to distinguish the changing characteristics of rivers and lakes. Here we analyze the spatial extent of permanent and seasonal rivers and lakes globally over the past 38 years based on new data of river system extents and surface water trends. Results show that while the total permanent surface area of both rivers and lakes has remained relatively constant, the areas with intermittent seasonal coverage have increased by 12 % and 27 % for rivers and lakes, respectively. The increase is statistically significant in over 84 % of global water catchments based on Spearman's rank correlations (rho) above 0.05 and p values less than 0.05. The seasonal river extent is nearly 32 % larger than the previously observed annual mean river extent, suggesting large seasonal variations that impact not only ecosystem health but also estimations of terrestrial biogeochemical cycles of carbon. The outcomes of our analysis are shared as the Surface Area of Rivers and Lakes (SARL) database, serving as a valuable resource for monitoring and research of hydrological cycles, ecosystem accounting, and water management.

Hydrology and Earth System Sciences↗

USGS2026

Patterns and drivers of cliff erosion in Big Sur, California, USA using repeat photogrammetry, 2017–2023

Seacliff erosion in steep terrain poses major risks to transportation and critical infrastructure. In Big Sur, California, USA, seacliff erosion threatens the sustainability of the central coast stretch of California State Route 1, a transportation corridor that is critical to the region's economy. Published cliff retreat rates for the region range from 1 to 40 cm yr −1 , highlighting that high-resolution, process-based studies could enhance understanding of the causes of spatial and temporal variability. We quantified cliff erosion and investigated its drivers along ∼13 km of the Big Sur coastline at week–month timescales during the late fall to early spring wet seasons between January 2017 and June 2023 by analyzing 3D point clouds developed from aerial imagery using four-dimensional structure-from-motion (4D SfM) photogrammetry techniques. We calculated cliff face retreat rates of 2.23 ± 3.06 cm yr −1 (mean ±1 σ ), an order of magnitude lower than long-term estimated rates for the region (which included large deep-seated landslides), but in line with short-term rates reported across California. Change detection imagery comparison, cliff profiles through time, and statistical analysis reveal a cyclical cliff evolution process in which erosion by wave action at the cliff base destabilizes the cliff and primes it for subsequent failure during precipitation events. Although more erosion by volume could be attributed to precipitation-induced increases in soil moisture (784 m 3 km −1 yr −1 ) compared with erosion attributed to wave power (282 m 3 km −1 yr −1 ), our observations underscore the coupled nature of these processes in driving cliff evolution, consistent with established theory and observations.

California↗

USGS1988

National water summary 1986: Hydrologic events and ground-water quality

Ground water is one of the most important natural resources of the United States and degradation of its quality could have a major effect on the welfare of the Nation. Currently (1985), ground water is the source of drinking water for 53 percent of the Nation's population and for more than 97 percent of its rural population. It is the source of about 40 percent of the Nation's public water supply, 33 percent of water for irrigation, and 17 percent of freshwater for selfsupplied industries. Ground water also is the source of about 40 percent of the average annual streamflow in the United States, although during long periods of little or no precipitation, ground-water discharges provide nearly all of the base streamflow. This hydraulic connection between aquifers and streams implies that if a persistent pollutant gets into an aquifer, it eventually could discharge into a stream. Information presented in the 1986 National Water Summary clearly shows that the United States has very large amounts of potable ground water available for use. Although naturally occurring constituents, such as nitrate, and human-induced substances, such as synthetic organic chemicals, frequently are detected in ground water, their concentrations usually do not exceed existing Federal or State standards or guidelines for maximum concentrations in drinking water. Troublesome contamination of ground water falls into two basic categories related to the source or sources of the contamination. Locally, high concentrations of a variety of toxic metals, organic chemicals, and petroleum products have been detected in ground water associated with point sources such as wastedisposal sites, storage-tank leaks, and hazardous chemical spills. These types of local problems commonly occur in densely populated urban areas and industrialized areas. Larger, multicounty areas also have been identified where contamination frequently is found in shallow wells. These areas generally are associated with broad-scale, or nonpoint, sources of contamination such as agricultural activities or highdensity domestic waste disposal (septic systems) in urban centers. At present, only a very small percentage of the total volume of potable ground water in the United States is contaminated from both point and nonpoint sources; however, available data, especially data about the occurrence of synthetic organic and toxic substances, generally are inadequate to determine the full extent of ground-water contamination in the Nation's aquifers or to define trends in groundwater quality. Most information about the occurrence of these substances has come from the study of individual sites or areas where contamination had already been detected or suspected. Management and protection of ground water present a major challenge to the Nation. Current and projected costs of detection and cleanup of existing ground-water contamination are staggering and, even so, complete removal of pollutants from ground water in the vicinity of some waste sites might not be technically feasible. At all levels of government, the task of protecting the resource for its most beneficial uses is difficult and controversial. Despite increasing awareness that some of the Nation's ground water is contaminated with a variety of toxic metals, synthetic organic chemicals, radionuclides, pesticides, and other contaminants that might present a long-term risk to human health, public policy towards ground-water protection is still in the formative stages. Despite increasing efforts devoted to ground-water protection by State and Federal regulatory and resource-management agencies, the extent of ground-water contamination is likely to appear to increase over the next few years because more agencies will be searching for evidence of contamination, and they will be using increasingly sensitive analytical procedures. Increased technology and expanded monitoring activities probably will detect the effects of past contamination and land uses on water quality. The significant time lag between a waterquality change in one part of an aquifer system and the effects of that change at a downgradient site, such as a well, results from the generally slow movement of ground water. This lag between cause and observed effect needs to be considered in evaluating the effectiveness of current and future ground-water policies and remedial measures. Conclusive answers to questions about the location, extent, and severity of ground-water contamination, and about trends in ground-water quality, must await further collection and analysis of data from the Nation's aquifers. Generalizations, however, can be made, and the 1986 National Water Summary, which describes the natural quality of ground-water resources in each State and the major contamination problems that have been identified as of 1986, provides a national perspective of the ground-water-quality situation. The 1986 National Water Summary follows the format of previous volumes. It contains three parts, and the contents of each of these parts are highlighted below.

Water Supply Paper↗

USGS2016

Geometric quality assessment of lidar data based on swath overlap

This paper provides guidelines on quantifying the relative horizontal and vertical errors observed between conjugate features in the overlapping regions of lidar data. The quantification of these errors is important because their presence quantifies the geometric quality of the data. A data set can be said to have good geometric quality if measurements of identical features, regardless of their position or orientation, yield identical results. Good geometric quality indicates that the data are produced using sensor models that are working as they are mathematically designed, and data acquisition processes are not introducing any unforeseen distortion in the data. High geometric quality also leads to high geolocation accuracy of the data when the data acquisition process includes coupling the sensor with geopositioning systems. Current specifications (e.g. Heidemann 2014) do not provide adequate means to quantitatively measure these errors, even though they are required to be reported. Current accuracy measurement and reporting practices followed in the industry and as recommended by data specification documents also potentially underestimate the inter-swath errors, including the presence of systematic errors in lidar data. Hence they pose a risk to the user in terms of data acceptance (i.e. a higher potential for Type II error indicating risk of accepting potentially unsuitable data). For example, if the overlap area is too small or if the sampled locations are close to the center of overlap, or if the errors are sampled in flat regions when there are residual pitch errors in the data, the resultant Root Mean Square Differences (RMSD) can still be small. To avoid this, the following are suggested to be used as criteria for defining the inter-swath quality of data: a) Median Discrepancy Angle b) Mean and RMSD of Horizontal Errors using DQM measured on sloping surfaces c) RMSD for sampled locations from flat areas (defined as areas with less than 5 degrees of slope) It is suggested that 4000-5000 points are uniformly sampled in the overlapping regions of the point cloud, and depending on the surface roughness, to measure the discrepancy between swaths. Care must be taken to sample only areas of single return points only. Point-to-Plane distance based data quality measures are determined for each sample point. These measurements are used to determine the above mentioned parameters. This paper details the measurements and analysis of measurements required to determine these metrics, i.e. Discrepancy Angle, Mean and RMSD of errors in flat regions and horizontal errors obtained using measurements extracted from sloping regions (slope greater than 10 degrees). The research is a result of an ad-hoc joint working group of the US Geological Survey and the American Society for Photogrammetry and Remote Sensing (ASPRS) Airborne Lidar Committee.

Conference Paper↗