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Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

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At least 865 records · Page 48Linked to original sources
USGS1989

Regional crustal structure and tectonics of the Pacific Coastal States: California, Oregon, and Washington

The Pacific Coastal States form a complex geologic environment in which the crust and lithosphere have been continuously reworked. We divide the region tectonically into the southern transform regime of the San Andreas fault and the northern subduction regime, and summarize the geophysical framework with contour maps of crustal thickness, lithospheric and seismicity cross sections, and results from site-specific geophysical studies. The uniformity of crustal thickness (30 ± 2 km) in southern California is remarkable, and appears to be primarily the result of crustal extension in the Mojave Desert and ductile shear of the lower crust along the plate transform boundary. Southern California seismicity defines a broad zone of deformation that extends from the Borderland to the Mojave Desert (about 300 km). The geophysical framework of central and northern California records magmatism and accretion associated with the Mesozoic and Cenozoic subduction, late Cenozoic transform faulting, and in the Basin and Range to the east, extension. The crust thickens from about 20 km at the coast to as much as 55 km in the Sierra Nevada, and thins to about 30 km in the Basin and Range. Cross sections of the crust show that seismic velocities and densities vary significantly over short distances perpendicular to the coast, reflecting processes that include the accretion of oceanic sediments and igneous crust, and significant lateral motion of crustal blocks. Maximum hypocentral depths in central California become deeper as the crust thickens to the west, but seismicity is low beneath the Great Valley and Sierra Nevada, which together appear to form a relatively undeforming block. The lower crust of the Pacific Coastal States has a high average seismic velocity (6.7 km/sec or greater), which probably is the product of tectonic underplating of oceanic crust and/or magmatic underplating by a basaltic melt.

California, Oregon, Washington↗
USGS2004

Inferring time‐varying recharge from inverse analysis of long‐term water levels

Water levels in aquifers typically vary in response to time‐varying rates of recharge, suggesting the possibility of inferring time‐varying recharge rates on the basis of long‐term water level records. Presumably, in the southwestern United States (Arizona, Nevada, New Mexico, southern California, and southern Utah), rates of mountain front recharge to alluvial aquifers depend on variations in precipitation rates due to known climate cycles such as the El Niño‐Southern Oscillation index and the Pacific Decadal Oscillation. This investigation examined the inverse application of a one‐dimensional analytical model for periodic flow described by Lloyd R. Townley in 1995 to estimate periodic recharge variations on the basis of variations in long‐term water level records using southwest aquifers as the case study. Time‐varying water level records at various locations along the flow line were obtained by simulation of forward models of synthetic basins with applied sinusoidal recharge of either a single period or composite of multiple periods of length similar to known climate cycles. Periodic water level components, reconstructed using singular spectrum analysis (SSA), were used to calibrate the analytical model to estimate each recharge component. The results demonstrated that periodic recharge estimates were most accurate in basins with nearly uniform transmissivity and the accuracy of the recharge estimates depends on monitoring well location. A case study of the San Pedro Basin, Arizona, is presented as an example of calibrating the analytical model to real data.

Water Resources Research↗
USGS2015

The vulnerability of Indo-Pacific mangrove forests to sea-level rise

Sea-level rise can threaten the long-term sustainability of coastal communities and valuable ecosystems such as coral reefs, salt marshes and mangroves. Mangrove forests have the capacity to keep pace with sea-level rise and to avoid inundation through vertical accretion of sediments, which allows them to maintain wetland soil elevations suitable for plant growth. The Indo-Pacific region holds most of the world’s mangrove forests, but sediment delivery in this region is declining, owing to anthropogenic activities such as damming of rivers. This decline is of particular concern because the Indo-Pacific region is expected to have variable, but high, rates of future sea-level rise. Here we analyse recent trends in mangrove surface elevation changes across the Indo-Pacific region using data from a network of surface elevation table instruments. We find that sediment availability can enable mangrove forests to maintain rates of soil-surface elevation gain that match or exceed that of sea-level rise, but for 69 per cent of our study sites the current rate of sea-level rise exceeded the soil surface elevation gain. We also present a model based on our field data, which suggests that mangrove forests at sites with low tidal range and low sediment supply could be submerged as early as 2070.

Indo-Pacific region↗
USGS2009

Managing Pacific salmon escapements: The gaps between theory and reality

There are myriad challenges to estimating intrinsic production capacity for Pacific salmon populations that are heavily exploited and/or suffering from habitat alteration. Likewise, it is difficult to determine whether perceived decreases in production are due to harvest, habitat, or hatchery influences, natural variation, or some combination of all four. There are dramatic gaps between the true nature of the salmon spawner/recruit relationship and the theoretical basis for describing and understanding the relationship. Importantly, there are also extensive practical difficulties associated with gathering and interpreting accurate escapement and run-size information and applying it to population management. Paradoxically, certain aspects of salmon management may well be contributing to losses in abundance and biodiversity, including harvesting salmon in mixed population fisheries, grouping populations into management units subject to a common harvest rate, and fully exploiting all available hatchery fish at the expense of wild fish escapements. Information on U.S. Pacific salmon escapement goal-setting methods, escapement data collection methods and estimation types, and the degree to which stocks are subjected to mixed stock fisheries was summarized and categorized for 1,025 known management units consisting of 9,430 known populations. Using criteria developed in this study, only 1% of U.S. escapement goals are by methods rated as excellent. Escapement goals for 16% of management units were rated as good. Over 60% of escapement goals have been set by methods rated as either fair or poor and 22% of management units have no escapement goals at all. Of the 9,430 populations for which any information was available, 6,614 (70%) had sufficient information to categorize the method by which escapement data are collected. Of those, data collection methods were rated as excellent for 1%, good for 1%, fair for 2%, and poor for 52%. Escapement estimates are not made for 44% of populations. Escapement estimation type (quality of the data resulting from survey methods) was rated as excellent for <1%, good for 30%, fair for 3%, poor for 22%, and nonexistent for 45%. Numerous recommendations for improvements in escapement mangement are made in this chapter. In general, improvements are needed on theoretical escapement management techniques, escapement goal setting methods, and escapement and run size data quality. There is also a need to change managers' and harvesters' expectations to coincide with the natural variation and uncertainty in the abundance of salmon populations. All the recommendations are aimed at optimizing the number of spawners-healthy escapements ensure salmon sustainability by providing eggs for future production, nutrients to the system, and genetic diversity.

Book chapter↗
USGS2008

Pacific Walrus Response to Arctic Sea Ice Losses

Sea ice plays an important role in the life of the Pacific walrus (Odobenus rosmarus divergens). U.S. Geological Survey (USGS) scientists are seeking to understand how losses of sea ice during summer over important foraging grounds in the Chukchi Sea will affect walruses. USGS scientists recently modified a remotely deployed satellite radio-tag that will aid in studying walrus foraging habitats and behaviors. Information from the tags will help USGS understand how walruses are responding to their changing environment.

Fact Sheet↗
USGS2004

Ichthyophoniasis: An emerging disease of Chinook salmon in the Yukon River

Before 1985, Ichthyophonus was unreported among Pacific salmon Oncorhynchus spp. from the Yukon River; now it infects more than 40% of returning adult Chinook salmon O. tshawytscha . Overall infection prevalence reached about 45% in the Yukon River and about 30% in the Tanana River between 1999 and 2003. Mean infection prevalence was greater in females than males in the main-stem Yukon River during each of the 5 years of the study, but the infection prevalence in males increased each year until the difference was no longer significant. Clinical signs of ichthyophoniasis (presence of visible punctate white lesions in internal organs) were least at the mouth of the Yukon River (&sim;10%) but increased to 29% when fish reached the middle Yukon River and was 22% at the upper Tanana River. However, clinical signs increased each year from 7% in 1999 to 27% in 2003 at the mouth of the river. As fish approached the upper reaches of the Yukon River (Canada) and the spawning areas of the Chena and Salcha rivers (Alaska), infection prevalence dropped significantly to less than 15% in females on the Yukon River and less than 10% for both sexes in the Chena and Salcha rivers, presumably because of mortality among infected prespawn fish. Age was not a factor in infection prevalence, nor was the position of fish within the run. The source of infection was not determined, but Ichthyophonus was not found in 400 Pacific herring Clupea pallasi from the Bering Sea or in 120 outmigrating juvenile Chinook salmon from two drainages in Alaska and Canada. Freshwater burbot Lota lota from the middle Yukon River were subclinically infected with Ichthyophonus , but the origin and relationship of this agent to the Chinook salmon isolate is unknown.

Yukon River↗
USGS1962

Fish kill from underwater explosions

The U.S. Geological Survey has used 23 different shotpoints during two seasons of field work in our seismic study of crustal structure in western United States. Without exception, it has been found that under-water shotpoints result in a more efficient conversion of explosive energy into seismic energy than do drilled-hole shotpoints. This experience, together with elimination of drilling costs, has led to the use of underwater shotpoints wherever possible. Three of the 23 shotpoints were in the Pacific Ocean, and for these we have no detailed information on the fish kill. Another six shotpoints were located in inland bodies of water. These are: * Soda Lake near Fallon, Nevada * Mono Lake near Lee Vining, California * Lake Mead near Boulder City, Nevada * Shasta Lake near Redding, California * C.J. Strike Reservoir near Bruneau, Idaho * Lucky Peak Reservoir near Boise, Idaho The 22 high-explosive charges, weighing a total of 95,100 pounds, that were fired in lakes containing fish life resulted in the known death of 2,413 game fish with a total weight of 759 pounds. The average mortality was 110 game fish or 34.5 pounds of game fish killed per average shot of 4,325 pounds of high-explosives.

California;Nevada;Idaho↗
USGS2013

Experimental infection studies demonstrating Atlantic salmon as a host and reservoir of viral hemorrhagic septicemia virus type IVa with insights into pathology and host immunity

In British Columbia, Canada (BC), aquaculture of finfish in ocean netpens has the potential for pathogen transmission between wild and farmed species due to the sharing of an aquatic environment. Viral hemorrhagic septicemia virus (VHSV) is enzootic in BC and causes serious disease in wild Pacific herring, Clupea pallasii, which often enter and remain in Atlantic salmon, Salmo salar, netpens. Isolation of VHSV from farmed Atlantic salmon has been previously documented, but the effects on the health of farmed salmon and the wild fish sharing the environment are unknown. To determine their susceptibility, Atlantic salmon were exposed to a pool of 9 isolates of VHSV obtained from farmed Atlantic salmon in BC by IP-injection or by waterborne exposure and cohabitation with diseased Pacific herring. Disease intensity was quantified by recording mortality, clinical signs, histopathological changes, cellular sites of viral replication, expression of interferon-related genes, and viral tissue titers. Disease ensued in Atlantic salmon after both VHSV exposure methods. Fish demonstrated gross disease signs including darkening of the dorsal skin, bilateral exophthalmia, light cutaneous hemorrhage, and lethargy. The virus replicated within endothelial cells causing endothelial cell necrosis and extensive hemorrhage in anterior kidney. Infected fish demonstrated a type I interferon response as seen by up-regulation of genes for IFNα, Mx, and ISG15. In a separate trial infected salmon transmitted the virus to sympatric Pacific herring. The results demonstrate that farmed Atlantic salmon can develop clinical VHS and virus can persist in the tissues for at least 10 weeks. Avoiding VHS epizootics in Atlantic salmon farms would limit the potential of VHS in farmed Atlantic salmon, the possibility for further host adaptation in this species, and virus spillback to sympatric wild fishes.

Veterinary Microbiology↗
USGS2013

Aftershocks of the 2010 M w 7.2 El Mayor-Cucapah earthquake revealcomplex faulting in the Yuha Desert, California

We detect and precisely locate over 9500 aftershocks that occurred in the Yuha Desert region during a 2 month period following the 4 April 2010 M w 7.2 El Mayor-Cucapah (EMC) earthquake. Events are relocated using a series of absolute and relative relocation procedures that include Hypoinverse, Velest, and hypoDD. Location errors are reduced to ~40 m horizontally and ~120 m vertically.Aftershock locations reveal a complex pattern of faulting with en echelon fault segments trending toward the northwest, approximately parallel to the North American-Pacific plate boundary and en echelon, conjugate features trending to the northeast. The relocated seismicity is highly correlated with published surface mapping of faults that experienced triggered surface slip in response to the EMC main shock. Aftershocks occurred between 2 km and 11 km depths, consistent with previous studies of seismogenic thickness in the region. Three-dimensional analysis reveals individual and intersecting fault planes that are limited in their along-strike length. These fault planes remain distinct structures at depth, indicative of conjugate faulting, and do not appear to coalesce onto a throughgoing fault segment. We observe a complex spatiotemporal migration of aftershocks, with seismicity that jumps between individual fault segments that are active for only a few days to weeks. Aftershock rates are roughly consistent with the expected earthquake production rates of Dieterich (1994). The conjugate pattern of faulting and nonuniform aftershock migration patterns suggest that strain in the Yuha Desert is being accommodated in a complex manner.

California↗
USGS2007

Ground motion issues for seismic analysis of tall buildings: A status report

The Pacific Earthquake Engineering Research Center (PEER) is coordinating a major multidisciplinary programme, the Tall Buildings Initiative (TBI), to address critical technical issues related to the design and analysis of new tall buildings located in coastal California. The authors of this paper, listed alphabetically, are involved in various research studies related to ground motion modelling, selection, modification and simulation for analysis of tall buildings. This paper summarizes the scope and progress of ongoing activities related to ground motion issues for response history analysis of tall buildings.

Structural Design of Tall and Special Buildings↗
USGS2018

Climate-related variation in plant peak biomass and growth phenology across Pacific Northwest tidal marshes

The interannual variability of tidal marsh plant phenology is largely unknown and may have important ecological consequences. Marsh plants are critical to the biogeomorphic feedback processes that build estuarine soils, maintain marsh elevation relative to sea level, and sequester carbon. We calculated Tasseled Cap Greenness, a metric of plant biomass, using remotely sensed data available in the Landsat archive to assess how recent climate variation has affected biomass production and plant phenology across three maritime tidal marshes in the Pacific Northwest of the United States. First, we used clipped vegetation plots at one of our sites to confirm that tasseled cap greenness provided a useful measure of aboveground biomass (r 2 = 0.72). We then used multiple measures of biomass each growing season over 20–25 years per study site and developed models to test how peak biomass and the date of peak biomass varied with 94 climate and sea-level metrics using generalized linear models and Akaike Information Criterion (AIC) model selection. Peak biomass was positively related to total annual precipitation, while the best predictor for date of peak biomass was average growing season temperature, with the peak 7.2 days earlier per degree C. Our study provides insight into how plants in maritime tidal marshes respond to interannual climate variation and demonstrates the utility of time-series remote sensing data to assess ecological responses to climate stressors.

Oregon, Washington↗
USGS2004

Population size and natural history of Mariana fruit bats (Chiroptera: Pteropodidae) on Sarigan, Mariana Islands

Based on count results, we estimated the population of Mariana fruit bats ( Pteropus mariannus Desmarest ) on Sarigan, Mariana Islands, to number 150-200 bats in 1999, 185-235 bats in 2000, and about 300-400 bats in 2001. Our results, plus those of two previous surveys, indicate that bat abundance on the island probably remained relatively stable at about 125-235 animals during much of the period from 1983 to 2000, then increased suddenly in 2001, most likely due to immigration from a neighboring island. Sarigan's population differs from those of larger islands in the archipelago by usually having smaller roost sizes, typically 3-75 bats, and large numbers of solitary bats that at times comprise up to half of the population. Colonies and smaller aggregations were composed primarily of harems with multiple females, whereas a nearly equal sex ratio occurred among solitary animals. Colonies roosted in isolated coconut trees in open grasslands and in native forest stands of various sizes, but avoided dense coconut forest. An estimated 30-50% of harem and solitary females possessed young in July 1999. Bats were recorded feeding on just six species of plants, which partly reflects the island's impoverished flora. We speculate that fruit bat abundance on Sarigan is limited primarily by food availability rather than hunting losses, in contrast to some other islands in the Marianas. Our study supports the contention that populations of P. mariannus in the northern Marianas are usually sedentary, but that interisland movements of larger numbers of bats may occur rarely.

Mariana Islands↗
USGS2010

Initial Results from a Study of Climatic Changes and the Effect on Wild Sheep Habitat in Selected Study Areas of Alaska

Climate change theorists have projected striking changes in local weather on earth due to increases in temperature. These predicted changes may cause melting glaciers and ice caps, rising sea levels, increasing desertification and other environmental changes which seem likely to affect presumed indicator species as harbingers of more significant changes. Wild sheep, even though they are one of the more successful mammalian taxa since Pleistocene times, exhibit a suite of adaptations to glacier driven environments which may be presumed to render them sensitive to environmental changes. The authors began investigation with these assumptions by comparing changes, as determined by satellite imagery, in glacier extent in our study areas in Denali National Park, Alaska, during the last 30 years. Our findings showed the extent of glacial retreat in Alaska during this time period was approximately 40-50 percent as measured by ablation zone and retreat of terminal moraines. During the first half of this 30-year period, Dall sheep (Ovis dalli dalli) populations were stable at historically recorded highs. In the early to mid-1990s, Dall sheep populations in Alaska declined from an historical estimated high of 75,000 sheep to the presently estimated 40-50,000. The declines seemed to be weather related, on the basis of the presumption that lamb survival rates are primarily weather-mediated in Alaska. Changes in local weather appear, at this point, to be correlated with oscillation in the Pacific Current in the Northern Pacific ocean. Of course, changes in local weather affect forage abundance and quality seasonally. In investigating a possible linkage of weather to seasonal forage abundance and quality, we also investigated changes in snow and ice extent and distribution, as well as increased water runoff associated with permafrost and depleted glaciers. Databases were assembled from a wide variety of remotely sensed satellite data, ground-based observations, and historical data bases relating to Dall sheep habitats in selected study areas. Alaska's sheep habitats are typified by long, narrow bands of mountainous uplifts generally arrayed west-to-east, and perpendicular to prevailing south-to-north weather-front movements. Classic Dall sheep habitat occurs on snow-shadowed slopes within these narrow mountainous habitats. On the basis of these data, we offer an explanatory hypothesis relating Dall sheep welfare to weather and climate-influenced nutrition and a monitoring scheme, which should produce data sufficient to test the robustness of this hypothesis. If correlated with population changes, the methods used in our comparative observations may provide long-term monitoring tools for wildlife managers and be applicable in other widely-dispersed wild sheep habitats. If no significant correlations emerge from our modeling exercises, the notion that wild sheep are a sufficiently sensitive species to be seen as an indicator species will have to be reexamined.

Open-File Report↗
USGS2023

Both Landsat- and LiDAR-derived measures predict forest bee response to large-scale wildfire

Large-scale disturbances such as wildfire can have profound impacts on the composition, structure, and functioning of ecosystems. Bees are critical pollinators in natural settings and often respond positively to wildfires, particularly in forests where wildfire leads to more open conditions and increased floral resources. The use of Light Detection and Ranging (LiDAR) provides opportunities for quantifying habitat features across large spatial scales and is increasingly available to scientists and land managers for post-fire habitat assessment. We evaluated the extent to which LiDAR-derived forest structure measurements can predict forest bee communities after a large, mixed-severity fire. We hypothesized that LiDAR measurements linked to post-fire forest structure would improve our ability to predict bee abundance and species richness when compared to satellite-based maps of burn severity. To test this hypothesis, we sampled wild bee communities within the Douglas Fire Complex in southwestern Oregon, USA. We then used LiDAR and Landsat data to quantify forest structure and burn severity, respectively, across bee sampling locations. We found that the LiDAR forest structure model was the best predictor of abundance, whereas the Landsat burn severity model had better predictive ability for species richness. Furthermore, the Landsat burn severity model was better at predicting the presence and species richness of bumble bees (Bombus spp.), an ecologically distinct and economically important group within the Pacific Northwest. We posit that the divergent responses of the two modeling approaches are due to distinct responses by bee taxa to variation in forest structure as mediated by wildfire, with bumble bees in particular depending on closed-canopy forest for some portions of their life cycle. Our study demonstrates that LiDAR data can provide information regarding the drivers of bee abundance in post-wildfire conifer forest, and that both remote sensing approaches are useful for predicting components of wild bee diversity after large-scale wildfire.

Oregon↗
USGS2024

Relative importance of macroalgae and phytoplankton to nearshore consumers and growth across climatic conditions in the northern Gulf of Alaska

Macroalgae and phytoplankton support the base of highly productive nearshore ecosystems in cold-temperate regions. To better understand their relative importance to nearshore food webs, this study considered four regions in the northern Gulf of Alaska where three indicator consumers were collected, filter-feeding mussels ( Mytilus trossulus ), pelagic-feeding Black Rockfish ( Sebastes melanops ), and benthic-feeding Kelp Greenling ( Hexagrammos decagrammus ). The study objectives were to (1) estimate the proportional contributions of macroalgal and phytoplankton organic matter using carbon and nitrogen stable isotopes, (2) determine if macroalgal use affected consumer growth using annual growth rings in shells or otoliths, and (3) describe changes in organic matter use and growth during the Pacific Marine Heatwave (PMH; 2014–2016) in one consumer, mussels. Macroalgae were the major organic matter source (> 60%) to the diet for all three consumers. The relationships between macroalgal contribution and growth were neutral for both fish species and significantly positive for mussels. During the PMH, mussels had a drop (> 10%) in macroalgal contributions and grew 45% less than in other time periods. Simultaneously, the relationship between macroalgal contribution and mussel growth was strongest during the PMH, explaining 48% variation compared to 3–12% before or after the PMH. Collectively, the results suggest that macroalgae is likely more important to cold-temperate nearshore food webs than phytoplankton. Management actions aimed at conserving and expanding macroalgae are likely to benefit nearshore food webs under all climate scenarios and especially during marine heatwaves.

Alaska↗
USGS1991

Observations of gas hydrates in marine sediments, offshore northern California

Biogenic gas hydrates were recovered in shallow cores (< 6 m deep) from the Eel River basin in offshore northern California between 40°38′ and 40°56′N. The gas hydrates contained primarily methane ( δ 13 C = −57.6 to −69.1‰) and occurred as dispersed crystals, small (2–20 mm) nodules, and layered bands within the sediment. These hydrates, recovered in sediment at water depths between 510 and 642 m, coincide nearly, but not exactly, with areas showing bottom-simulating reflectors (BSRs) on seismic-reflection records. This study confirms indirect geophysical and geologic observations that gas hydrates are present north of the Mendocino Fracture Zone in sediment of the Eel River basin but probably are absent to the south in the Point Arena basin. This discovery extends the confirmed sites of gas hydrates in the eastern Pacific region beyond the Peruvian and Central American margins to the northern California margin.

Marine Geology↗
USGS2003

Extraordinary phase separation and segregation in vent fluids from the southern East Pacific Rise

The discovery of Brandon vent on the southern East Pacific Rise is providing new insights into the controls on midocean ridge hydrothermal vent fluid chemistry. The physical conditions at the time ofsampling (287 bar and 405??C) place the Brandon fluids very close to the critical point of seawater (298 bar and 407??C). This permits in situ study of the effects of near criticalphenomena, which are interpreted to be the primary cause of enhanced transition metal transport in these fluids. Of the five orifices on Brandon sampled, three were venting fluids with less than seawater chlorinity, and two were venting fluids with greater than seawater chlorinity. The liquid phase orifices contain 1.6-1.9 times the chloride content of the vapors. Most other elements, excluding the gases, have this same ratio demonstrating the conservative nature of phase separation and the lack of subsequent water-rock interaction. The vapor and liquid phases vent at the same time from orifices within meters of each other on the Brandon structure. Variations in fluid compositions occur on a time scale of minutes. Our interpretation is that phase separation and segregation must be occurring 'real time' within the sulfide structure itself. Fluids from Brandon therefore provide an unique opportunity to understand in situ phase separation without the overprinting of continued water-rock interaction with the oceanic crust, as well as critical phenomena. ?? 2002 Elsevier Science B.V. All rights reserved.

Earth and Planetary Science Letters↗
USGS2020

Transcriptomic response to elevated water temperatures in adult migrating Yukon River Chinook salmon (Oncorhynchus tshawytscha)

Chinook salmon ( Oncorhynchus tshawytscha ) declines are widespread and may be attributed, at least in part, to warming river temperatures. Water temperatures in the Yukon River and tributaries often exceed 18°C, a threshold commonly associated with heat stress and elevated mortality in Pacific salmon. Untangling the complex web of direct and indirect physiological effects of heat stress on salmon is difficult in a natural setting with innumerable system challenges but is necessary to increase our understanding of both lethal and sublethal impacts of heat stress on populations. The goal of this study was to characterize the cellular stress response in multiple Chinook salmon tissues after acute elevated temperature challenges. We conducted a controlled 4-hour temperature exposure (control, 18°C and 21°C) experiment on the bank of the Yukon River followed by gene expression (GE) profiling using a 3′-Tag-RNA-Seq protocol. The full transcriptome was analysed for 22 Chinook salmon in muscle, gill and liver tissue. Both the 21°C and 18°C treatments induced greater activity in genes associated with protein folding (e.g. HSP70, HSP90 mRNA) processes in all tissues. Global GE patterns indicate that transcriptomic responses to heat stress were highly tissue-specific, underscoring the importance of analyzing multiple tissues for determination of physiological effect. Primary superclusters (i.e. groupings of loosely related terms) of altered biological processes were identified in each tissue type, including regulation of DNA damage response (gill), regulation by host of viral transcription (liver) and regulation of the force of heart contraction (muscle) in the 21°C treatment. This study provides insight into mechanisms potentially affecting adult Chinook salmon as they encounter warm water during their spawning migration in the Yukon River and suggests that both basic and more specialized cellular functions may be disrupted.

Alaska↗