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Environmental health science at the U.S. Geological Survey

USGS environmental health science focuses on the environment-health interface. Research characterizes the processes that affect the interaction among the physical environment, the living environment, and people, as well as the factors that affect ecological and human exposure to disease agents and the resulting toxicologic or infectious disease. The mission of USGS in environmental health science is to contribute scientific information to environmental, natural resource, agricultural, and public-health managers, who use that information to support sound decisionmaking. Coordination with partners and stakeholders will enable USGS to focus on the highest priority environmental health issues, to make relevant, timely, and useable contributions, and to become a “partner of first choice” for environmental health science.

Fact Sheet↗

Louisiana Barrier Island Comprehensive Monitoring Program: Mapping habitats in beach, dune, and intertidal environments along the Louisiana Gulf of Mexico shoreline, 2008 and 2015–16

Barrier islands, headlands, and coastal shorelines provide numerous valuable ecosystem goods and services, including storm protection and erosion control for the mainland, habitat for fish and wildlife, salinity regulation in estuaries, carbon sequestration in marshes, and areas for recreation and tourism. These coastal features are dynamic environments because of their position at the land-sea interface. Storms, wave energy, tides, currents, and relative sea-level rise are powerful forces that shape local geomorphology and habitat distribution. In order to make more informed decisions, coastal resource managers require insights into how these dynamic systems are changing through time. In 2005, Louisiana’s Coastal Protection and Restoration Authority, in partnership with the University of New Orleans and the U.S. Geological Survey, developed the Barrier Island Comprehensive Monitoring (BICM) Program. The goal of the BICM Program is to develop long-term datasets for habitat coverage, shoreline assessments, shoreline position, topobathymetric changes, and sediment characterization to assist with planning, designing, evaluating, and maintaining current and future barrier shorelines. The overall objectives of the study described in this report were to (1) map habitats for 2008 and 2015–16 for BICM coastal reaches and (2) map habitat change between these two time periods. This report highlights the second phase of habitat analyses for the BICM Program. This work builds on a previous habitat analysis conducted by the University of New Orleans, which included the development of habitat maps for 1996/1998, 2001, 2004, and 2005, along with habitat change maps. For this current effort, a new 15-class habitat scheme was developed from the original BICM scheme to further delineate various dune habitats, including meadow habitat found along the backslopes of dunes, to distinguish between marsh and mangrove, and to distinguish between beach and unvegetated barrier flat habitats. Additionally, a geographic object-based image analysis-based mapping framework was used to incorporate relative topography and address elevation uncertainty in light detection and ranging data to assist with mapping dune and intertidal habitats. For the entire BICM region, the area experiencing a change in a land/water category (that is, land gain or land loss) was 3.4 percent, of which, 59.2 percent was land gain and 40.8 percent was land loss. Areal coverages of meadow, mangrove, scrub/shrub, and vegetated dune increased from 2008 to 2015–16, whereas areal coverages of beach, grassland, and intertidal decreased. The decrease in intertidal, however, was largely due to differing water levels in the orthophotography between the two time periods. Regional analyses of habitat coverage and habitat change captured the dynamic nature of these systems and the effects of restoration efforts, most notably in the Late Lafourche Delta, Modern Delta, and Chandeleur Islands regions. For instance, in the Modern Delta region there was a marked increase in unvegetated flat, meadow, mangrove, scrub/shrub, beach, unvegetated dune, and vegetated dune. As a result, this region experienced the highest percent change for land/water classes (6.6 percent) with land gain accounting for much of this change (70.8 percent). In contrast, the Acadiana Bays region had the highest relative percent loss of all regions. The region had a percent change for land/water classes of 2.8 percent, of which, 79.7 percent was land loss. The results of this study provide information about the areal coverage and distribution of habitats for two recent time periods and change over about an 8-year period. These data can be used to evaluate changes along the Louisiana Gulf of Mexico shoreline, including gradual changes caused by coastal processes, restoration actions, and (or) episodic events, such as hurricanes and extreme storms.

Louisiana↗

Coking coal of the United States—Modern and historical coking coal mining locations and chemical, rheological, petrographic, and other data from modern samples

Coking coal, or metallurgical coal, has been produced in the United States for nearly 200 years. Coking coal is primarily used in the production of coke for use in the steel industry, and for other uses (for example, foundries, blacksmithing, heating buildings, and brewing). Currently, U.S. coking coal is produced in Alabama, Arkansas, Pennsylvania, Virginia , and West Virginia. Historically, coking coal has also been produced in 15 other states (Alaska, Colorado, Georgia, Illinois, Indiana, Kentucky, Maryland, Montana, New Mexico, Ohio, Oklahoma, Tennessee, Utah, Washington, and Wyoming), but currently is not. Coals from the Appalachian, Arkoma, and Illinois basins are Pennsylvanian in age, while coals in Alaska, Colorado, Montana, New Mexico, Utah, Washington, and Wyoming range in age from Early Cretaceous through Eocene. This Open-File Report presents the geographic locations of current and historical coking coal deposits of the United States, with additional information about recent and historical mining and exploration activities. Chemical, rheological, petrographic, and other criteria for evaluating the coking potential of coals are discussed, and historical data for coking coals in the United States are presented. In addition, new coking coal samples from Alabama, Arkansas, Kentucky, and Oklahoma were collected and analyzed for this report, and the data are presented in multiple tables, including proximate and ultimate analyses; calorific value; sulfur forms; major-, minor-, and trace-element abundances; Free-Swelling Index; Gieseler Plastometer analyses; American Society for Testing and Materials (ASTM) dilatation; coal petrography; and predicted values of Coal Stability Factor and Coal Strength after Reaction with CO 2 (pCSF and pCSR, respectively). Data from previously analyzed coking coal samples in Kentucky, Pennsylvania, Virginia, and West Virginia were supplied by three companies, including results from all the tests listed above, plus oxidation, Hardgrove Grindability Index, and ash fusion (in a reducing environment) temperatures are also presented in tables in the report. Geographic Information System (GIS) data compiled for this project are available for download for public and private utilization and may be used to create maps for a variety of energy resource studies. These GIS data are in shapefile format, and metadata files are included describing all GIS processing. Additional geographic information about coking coal areas of the United States are also presented in tabular format in the report, including the following: names of coal basins, fields, regions, districts, and areas; coal beds or zones; geographic locations including States, counties, towns, rivers, mountains, etc.; stratigraphic hierarchy and age of the coal-bearing interval; coking characteristics including sulfur content, ash yield, volatile matter, moisture, calorific value, and Free-Swelling Index; coal rank; names of coal mines and coal-mining companies; current and past mining activity; and references for reports about the coal.

Open-File Report↗

Gulf Islands National Seashore regional sediment budget research and data needs—Workshop series summary

Executive Summary The National Park Service (NPS), in collaboration with the U.S. Geological Survey (USGS), recognizes the need to quantify the sediment budget of the barrier islands within the Gulf Islands National Seashore (GINS) to understand the coastal processes affecting island resiliency. To achieve this goal, identifying and quantifying the physical parameters that drive long-term change is necessary to model the processes that are both generative and terminal in island evolution and capture island response to long-term human alteration and climatic patterns. For example, measuring change across periods of storminess is more effective at assessing island resiliency than measuring change resulting from a single storm impact. Understanding changes to the physical environment over time is key to successfully predicting island responses to future storm impacts, human alteration, and sea-level rise and is necessary for effective decision making and management response. Yet, the diversity of factors affecting natural and cultural resources necessitates a strategic approach to data collection priorities that can inform sediment budget quantification and integrated resource management. This study sought to advance sediment budget modeling efforts by conducting a “Needs Assessment Workshop” at the GINS. The purpose of the workshop was to identify and prioritize the specific research and data needs regarding the sediment budget at the GINS that can enhance the NPS efforts to conserve the islands’ natural resources, cultural resources, and the facilities and infrastructure that support both conservation and visitor use of those resources. This effort explored two research questions: (1) “what research and data needs exist for the sediment budget at Gulf Islands National Seashore” (research question 1) and (2) “how can research to address these needs capitalize on regional partnerships to advance natural and cultural resource conservation at Gulf Islands National Seashore” (research question 2)? The workshop was conducted virtually in a two-part, two-day series. The workshop series was organized by researchers from North Carolina State University in collaboration with NPS and USGS staff and was facilitated by National Oceanographic and Atmospheric Administration staff. The workshop series (two paired, sequential, partial-day workshops) addressed two target audiences: (1) NPS and USGS staff (April workshop) and (2) regional Federal, State, county, and nongovernmental organization staff, including NPS and USGS staff (May workshop). A total of four workshop sessions were held, comprising two sessions with each target audience. The workshop series intended to identify sediment management research and data needs that could enhance natural and cultural resource stewardship at the GINS. One objective was to share information about regional sediment transport and management, available sediment management plans, and predictive modeling capabilities, including geomorphologic and hydrodynamic predictive models. This information was shared through a series of presentations by park managers and NPS and USGS researchers that identified park issues and available capabilities and data. The second objective was to elicit research and data needs, with a primary goal of assessing the importance and urgency of the identified needs. This assessment was partly determined by requesting that the workshop participants identify and prioritize research themes through polls, comments, and discussion. The polls explicitly asked participants to qualitatively evaluate the importance (not at all, slightly, somewhat, very, or extremely) and urgency (not at all, slightly, somewhat, very, or extremely) of the thematically grouped research and data needs. These evaluations were plotted and shared during the workshop to visualize how the relative importance ( x -axis) and relative urgency ( y -axis) of each “need,” relative to other needs, to identify the most necessary (importance) and time-sensitive (urgent) items, thereby allowing an enhanced, holistic understanding of the sediment budget at GINS. Results of the poll are published as a USGS data release. The assessment results revealed that the most important and urgent research and data needs included mapping (for example, elevation, habitat, and cultural resources), a regional sediment budget and management plan, and the dynamic modeling of sediment processes. During the workshop, these issues were visualized using scatter plots to demonstrate the relative importance and urgency of each theme, provide descriptive statistics, and elicit discussion. This format of iterative presentation, discussion, and prioritization allowed the project team to effectively accomplish their objective of identifying important and urgent research needs for natural and cultural resource stewardship at the GINS. Through the workshop, it was determined that expanded communication with the broader research community was needed to coordinate research activities and streamline potential funding opportunities and that research and policy should be integrated through a structured decision-making process. At the conclusion of the workshop, an administered poll showed that the presentations effectively identified data and research needs and that the goals of the workshop were achieved. The results suggest that this type of needs-assessment workshop can effectively identify existing research capabilities and data, determine and prioritize research and data needs, and address how these efforts can use regional partnerships to aid natural and cultural resource conservation and management at National Parks.

Florida, Mississippi↗

Linear regression model documentation for computing water-quality constituent concentrations using continuous real-time water-quality data for the Republican River, Clay Center, Kansas, July 2018 through March 2021

The Republican River is the primary inflow to Milford Lake and drains areas of Kansas, Nebraska, and Colorado. Milford Lake has been listed as impaired and designated hypereutrophic by the Kansas Department of Health and Environment because of excessive nutrient loading. Milford Lake had confirmed harmful algal blooms every summer from 2011 through 2017 and in 2020 and 2021. In the lower Republican River drainage basin, the Regional Conservation Partnership Program, administered by the Natural Resources Conservation Service, provides reimbursement to agricultural producers that implement best management practices intended to decrease sediment and nutrient runoff and loading into Milford Lake. Sediment and nutrient loads could potentially be driving factors in the development of harmful algal blooms in the reservoir. Since July 2018, the U.S. Geological Survey, in cooperation with the Kansas Water Office, has collected continuous and discrete water-quality data at the Republican River at Clay Center, Kansas, streamgage (U.S. Geological Survey station 06856600), which is about 15 river miles upstream from Milford Lake. This report documents site-specific regression models for the computation of continuous concentrations of suspended sediment, total nitrogen, total phosphorus, and total carbon developed using continuous and discrete data collected from July 24, 2018, the date of continuous water-quality monitor installation, through March 31, 2021. The objective of this study is to characterize sediment and nutrient transport in the Milford Lake drainage basin before, during, and after best management practice implementation using the models described in this report. The explanatory variable turbidity explained a high amount (72–96 percent) of the variance in suspended-sediment, total nitrogen, total phosphorus, and total carbon concentrations. Statistical plots for the four selected models showed the desired normality and homoscedasticity in residuals, and model standard error ratios indicated that recomputing each selected model after removing a randomly selected 10 percent of the data did not substantially change model coefficients.

Kansas↗

Characterizing and simulating sediment loads and transport in the lower part of the San Antonio River Basin

This extended abstract is based on the U.S. Geological Survey Scientific Investigations Reports by Crow et al. (2013) and Banta and Ockerman (2014). Suspended sediment in rivers and streams can play an important role in ecological health of rivers and estuaries and consequently is an important issue for water-resource managers. The quantity and type of suspended sediment can affect the biological communities (Wood and Armitage, 1997), the concentration and movement of natural constituents and anthropogenic contaminants (Moran and others, 2012), and the amount of sediment deposition in coastal environments (Milliman and Meade, 1983). To better understand suspended-sediment characteristics in the San Antonio River Basin, the U.S. Geological Survey (USGS), in cooperation with the San Antonio River Authority and Texas Water Development Board, conducted a two-phase study to (1) collect and analyze sediment data to characterize sediment conditions in the San Antonio River downstream of San Antonio, Texas, and (2) develop and calibrate a watershed model to simulate hydrologic conditions and suspended-sediment loads for four watersheds in the San Antonio River Basin, downstream from San Antonio, Texas.

Texas↗

Mapping the seabed and habitats in National Marine Sanctuaries - Examples from the East, Gulf and West Coasts

The National Marine Sanctuary System requires seabed and habitat maps to serve as a basis for managing sanctuary resources and for conducting research. NOAA, the agency that manages the sanctuaries, and the USGS have conducted mapping projects in three sanctuaries (Stellwagen Bank NMS, Flower Garden Banks NMS, and Channel Islands NMS) with an emphasis on collaboration of geologists and biologists from the two agencies and from academic institutions. Mapping of seabed habitats is a developing field that requires the integration of geologic and biologic studies and the use of swath imaging techniques such as multibeam and sidescan sonar. Major products of swath mapping are shaded-relief topographic imagery which shows seabed features in great detail, and backscatter imagery which provides an indication of the types of materials that constitute the seabed. Sea floor images provide an excellent basis for conducting the groundtruthing studies (using video, photo, and sampling techniques) that are required to collect the data necessary for making meaningful interpretative maps of the seabed. The compilation of interpretive maps showing seabed environments and habitats also requires the development of a sea floor classification system that will be a basis for comparing, managing, and researching characteristic areas of the seabed. Seabed maps of the sanctuaries are proving useful for management and research decisions that address commercial and recreational fishing, habitat disturbance, engineering projects, tourism, and cultural resources.

Marine Technology Society Journal↗

EAARL coastal topography-western Florida, post-Hurricane Charley, 2004: seamless (bare earth and submerged.

Project Description These remotely sensed, geographically referenced elevation measurements of lidar-derived seamless (bare-earth and submerged) topography were produced as a collaborative effort between the U.S. Geological Survey (USGS), Coastal and Marine Geology Program (CMGP), St. Petersburg, FL, and the National Aeronautics and Space Administration (NASA), Wallops Flight Facility, VA. This project provides highly detailed and accurate datasets of a portion of the western Florida coastline beachface, acquired post-Hurricane Charley on August 17 and 18, 2004. The datasets are made available for use as a management tool to research scientists and natural-resource managers. An innovative airborne lidar instrument originally developed at the NASA Wallops Flight Facility, and known as the Experimental Advanced Airborne Research Lidar (EAARL), was used during data acquisition. The EAARL system is a raster-scanning, waveform-resolving, green-wavelength (532-nanometer) lidar designed to map near-shore bathymetry, topography, and vegetation structure simultaneously. The EAARL sensor suite includes the raster-scanning, water-penetrating full-waveform adaptive lidar, a down-looking red-green-blue (RGB) digital camera, a high-resolution multispectral color infrared (CIR) camera, two precision dual-frequency kinematic carrier-phase GPS receivers, and an integrated miniature digital inertial measurement unit, which provide for sub-meter georeferencing of each laser sample. The nominal EAARL platform is a twin-engine Cessna 310 aircraft, but the instrument may be deployed on a range of light aircraft. A single pilot, a lidar operator, and a data analyst constitute the crew for most survey operations. This sensor has the potential to make significant contributions in measuring sub-aerial and submarine coastal topography within cross-environmental surveys. Elevation measurements were collected over the survey area using the EAARL system, and the resulting data were then processed using the Airborne Lidar Processing System (ALPS), a custom-built processing system developed in a NASA-USGS collaboration. ALPS supports the exploration and processing of lidar data in an interactive or batch mode. Modules for presurvey flight-line definition, flight-path plotting, lidar raster and waveform investigation, and digital camera image playback have been developed. Processing algorithms have been developed to extract the range to the first and last significant return within each waveform. ALPS is used routinely to create maps that represent submerged or sub-aerial topography. Specialized filtering algorithms have been implemented to determine the 'bare earth' under vegetation. For more information about similar projects, please visit the Decision Support for Coastal Science and Management website. Selected References Brock, J.C., Wright, C.W., Sallenger, A.H., Krabill, W.B., and Swift, R.N., 2002, Basis and methods of NASA airborne topographic mapper Lidar surveys for coastal studies: Journal of Coastal Research, v. 18, no. 1, p. 1-13. Crane, Michael, Clayton, Tonya, Raabe, Ellen, Stoker, Jason, Handley, Larry, Bawden, Gerald, Morgan, Karen, and Queija, Vivian, 2004, Report of the U.S. Geological Survey Lidar workshop sponsored by the Land Remote Sensing Program and held in St. Petersburg, FL, November 2002: U.S. Geological Survey Open-File Report 2004-1456, 72 p. Nayegandhi, Amar, Brock, J.C., and Wright, C.W., 2009, Small-footprint, waveform-resolving Lidar estimation of submerged and sub-canopy topography in coastal environments: International Journal of Remote Sensing, v. 30, no. 4, p. 861-878. Sallenger, A.H., Wright, C.W., and Lillycrop, Jeff, 2005, Coastal impacts of the 2004 hurricanes measured with airborne Lidar; initial results: Shore and Beach, v. 73, nos. 2-3, p. 10-14. Resources Included Readme.txt File

Data Series↗

A working environment for digital planetary data processing and mapping using ISIS and GRASS GIS

Since the beginning of planetary exploration, mapping has been fundamental to summarize observations returned by scientific missions. Sensor-based mapping has been used to highlight specific features from the planetary surfaces by means of processing. Interpretative mapping makes use of instrumental observations to produce thematic maps that summarize observations of actual data into a specific theme. Geologic maps, for example, are thematic interpretative maps that focus on the representation of materials and processes and their relative timing. The advancements in technology of the last 30 years have allowed us to develop specialized systems where the mapping process can be made entirely in the digital domain. The spread of networked computers on a global scale allowed the rapid propagation of software and digital data such that every researcher can now access digital mapping facilities on his desktop. The efforts to maintain planetary missions data accessible to the scientific community have led to the creation of standardized digital archives that facilitate the access to different datasets by software capable of processing these data from the raw level to the map projected one. Geographic Information Systems (GIS) have been developed to optimize the storage, the analysis, and the retrieval of spatially referenced Earth based environmental geodata; since the last decade these computer programs have become popular among the planetary science community, and recent mission data start to be distributed in formats compatible with these systems. Among all the systems developed for the analysis of planetary and spatially referenced data, we have created a working environment combining two software suites that have similar characteristics in their modular design, their development history, their policy of distribution and their support system. The first, the Integrated Software for Imagers and Spectrometers (ISIS) developed by the United States Geological Survey, represents the state of the art for processing planetary remote sensing data, from the raw unprocessed state to the map projected product. The second, the Geographic Resources Analysis Support System (GRASS) is a Geographic Information System developed by an international team of developers, and one of the core projects promoted by the Open Source Geospatial Foundation (OSGeo). We have worked on enabling the combined use of these software systems throughout the set-up of a common user interface, the unification of the cartographic reference system nomenclature and the minimization of data conversion. Both software packages are distributed with free open source licenses, as well as the source code, scripts and configuration files hereafter presented. In this paper we describe our work done to merge these working environments into a common one, where the user benefits from functionalities of both systems without the need to switch or transfer data from one software suite to the other one. Thereafter we provide an example of its usage in the handling of planetary data and the crafting of a digital geologic map. ?? 2010 Elsevier Ltd. All rights reserved.

Conference Paper↗

Denitrification in the recharge area and discharge area of a transient agricultural nitrate plume in a glacial outwash sand aquifer, Minnesota

Recharge rates of nitrate (NO 3 − ) to groundwater beneath agricultural land commonly are greater than discharge rates of NO 3 − in nearby streams, but local controls of NO 3 − distribution in the subsurface generally are poorly known. Groundwater dating (CFC, 3 H) was combined with chemical (ions and gases) and stable isotope (N, S, and C) analyses to resolve the effects of land use changes, flow patterns, and water‐aquifer reactions on the distributions of O 2 , NO 3 − , SO 4 = , and other constituents in a two‐dimensional vertical section leading from upland cultivated fields to a riparian wetland and stream in a glacial outwash sand aquifer near Princeton, Minnesota. Within this section a “plume” of oxic NO 3 − ‐rich groundwater was present at shallow depths beneath the fields and part of the wetland but terminated before reaching the stream or the wetland surface. Groundwater dating and hydraulic measurements indicate travel times in the local flow system of 0 to >40 years, with stratified recharge beneath the fields, downward diversion of the shallow NO 3 − ‐bearing plume by semiconfining organic‐rich valley‐filling sediments under the wetland and upward discharge across the valley and stream bottom. The concentrations and δ 15 N values of NO 3 − and N 2 indicate that the NO 3 − plume section was bounded in three directions by a curvilinear zone of active denitrification that limited its progress; however, when recalculated to remove the effects of denitrification, the data also indicate changes in both the concentrations and δ 15 N values of NO 3 − that was recharged in the past. Isotope data and mass balance calculations indicate that FeS 2 and other ferrous Fe phases were the major electron donors for denitrification in at least two settings: (1) within the glacial‐fluvial aquifer sediments beneath the recharge and discharge areas and (2) along the bottom of the valley‐filling sediments in the discharge area. Combined results indicate that the shape and progress of the oxic NO 3 − plume termination were controlled by a combination of (1) historical and spatial variations in land use practices, (2) contrast in groundwater flow patterns between the agricultural recharge area and riparian wetland discharge area, and (3) distribution and abundance of electron donors in both the sand aquifer and valley‐filling sediments. The data are consistent with slow migration of redox zones through the aquifer in response to recharging oxic groundwater during Holocene time, then an order‐of‐magnitude increase in the flux of electron acceptors as a result of agricultural NO 3 − contamination in the late twentieth century, to which the redox zone configuration still may be adjusting. The importance of denitrification for NO 3 − movement through formerly glaciated terrains should depend on the source areas and depositional environments of the glacial sediments, as well as geomorphology and recent stream‐valley sediment history.

Water Resources Research↗

Combined use of groundwater dating, chemical, and isotopic analyses to resolve the history and fate of nitrate contamination in two agricultural watersheds, Atlantic coastal plain, Maryland

The history and fate of groundwater nitrate (NO 3 − ) contamination were compared in 2 small adjacent agricultural watersheds in the Atlantic coastal plain by combined use of chronologic (CCl 2 F 2 , 3 H), chemical (dissolved solids, gases), and isotopic (δ 15 N,δ 13 C, δ 34 S) analyses of recharging groundwaters, discharging groundwaters, and surface waters. The results demonstrate the interactive effects of changing agricultural practices, groundwater residence times, and local geologic features on the transfer of NO 3 − through local flow systems. Recharge dates of groundwaters taken in 1990–1992 from the surficial aquifer in the Chesterville Branch and Morgan Creek watersheds near Locust Grove, Maryland, ranged from pre-1940 to the late 1980’s. When corrected for localized denitrification by use of dissolved gas concentrations, the dated waters provide a 40-year record of the recharge rate of NO 3 − , which increased in both watersheds by a factor of 3–6, most rapidly in the 1970's. The increase in groundwater NO 3 − over time was approximately proportional to the documented increase in regional N fertilizer use, and could be accounted for by oxidation and leaching of about 20–35% of the fertilizer N. Groundwaters discharging upward beneath streams in both watersheds had measured recharge dates from pre-1940 to 1975, while chemical data for second-order reaches of the streams indicated average groundwater residence times in the order of 20+ years. At the time of the study, NO 3 − discharge rates were less than NO 3 − recharge rates for at least two reasons: (1) discharge of relatively old waters with low initial NO 3 − concentrations, and (2) local denitrification. In the Chesterville Branch watershed, groundwaters remained oxic throughout much of the surficial aquifer and discharged relatively unaltered to the stream, which had a relatively high NO 3 − concentration (9–10 mg/L as N). In the Morgan Creek watershed, groundwaters were largely reduced and denitrified before discharging to the stream, which had a relatively low NO 3 − concentration (2–3 mg/L as N). Chemical and isotopic data indicate that quantitative denitrification occurred within buried calcareous glauconitic marine sediments that are present at relatively shallow depths beneath the Morgan Creek watershed. NO 3 − removal by forests, wetlands, and shallow organic-rich soils in near-stream environments was largely avoided by groundwaters that followed relatively deep flow paths before converging and discharging rapidly upward to the streams.

Maryland↗

Organochlorine compounds in streambed sediment and in biological tissue from streams and their relations to land use, central Arizona

Streambed-sediment samples from 13 sites and biological-tissue samples from 11 sites in the Gila River Basin in central Arizona were analyzed for 32 organochlorine compounds in streambed sediment and 28 compounds in biological tissue during 1996 as part of the U.S. Geological Survey's National Water-Quality Assessment program. The objectives of the study were to determine the occurrence and distribution of organochlorine compounds and their relation to land use. Sampling sites were categorized on the basis of major land uses in the basin or the source of water in the stream. Because land uses were mixed or had changed over time, some land-use categories were combined. Sites were categorized as forest/rangeland (6), forest/urban (1), urban (4), or agricultural/urban (2). Thirteen organochlorine compounds were detected in streambed-sediment samples, and 10 were detected in tissue samples. The number of compounds found in streambed-sediment samples from individual sites ranged from 0 to 10, and the range for individual tissue samples was 0 to 7. Comparison of the number of detections in streambed-sediment samples to the number of detections in tissue samples from particular sites where both were sampled yielded five instances where more compounds were detected in streambed sediment, six instances where more compounds were detected in tissue, and five instances where the number of detections in streambed sediment and tissue were equal. The frequency of detection of particular compounds for sites where both streambed sediment and tissue were sampled resulted in five compounds being detected more frequently in streambed sediment, five more frequently in tissue, and three compounds that were equally frequent in streambed sediment and in tissue. Few contaminants were detected in samples from the forest/rangeland sites; greater numbers of compounds were detected at the urban sites and at the forest/urban site. The greatest number of compounds and the highest concentrations of many contaminants were detected at agriculture/urban sites. The compound detected most frequently in streambed-sediment and tissue samples was p,p'-DDE. Streambed-sediment guideline values for the protection of aquatic life for p,p'-DDE and total DDT were exceeded at both agricultural/urban sites, The streambed-sediment guideline value for the protection of aquatic life for total chlordane was exceeded at one agricultural/urban site, one urban site, and the forest/urban site. The streambed-sediment guideline value for the protection of aquatic life for total PCB’s was exceeded at one agricultural/urban site. Guideline values for the protection of fish-eating wildlife for total DDT and for toxaphene were exceeded only in samples from the two agricultural/urban sites. The guideline value for the protection of fish-eating wildlife for total PCB’s was equaled or exceeded in samples from two sites—one urban and one agricultural/urban site. Screening values established by the U.S. Environmental Protection Agency for the protection of human health for edible portions of fish were exceeded by total DDT and by toxaphene in fish-tissue samples from both agricultural/urban sites. The human-health criterion for total PCB’s was exceeded in two fish-tissue samples from an agricultural site and from an urban site. Tissue samples analyzed in this study were for whole fish, and thus, concentration data are not entirely comparable to the screening values of the U.S. Environmental Protection Agency. Because these exceedences were an order of magnitude above the criteria, however, it is possible that concentrations in the edible portions of fish from these locations could present a human- health risk. Analyses of samples of edible portions of fish from these locations would be needed to adequately assess the presence or absence of a human-health risk. The similarity of the results of this study to the results of other studies of organochlorine compounds in the environment suggests that there is a correlation between contaminants in sediment and biological-tissue samples and land uses. As with other studies of the occurrence and distribution of organochlorine contaminants in streambed sediments and biological tissue, this study shows that many organochlorine compounds continue to persist in the environment and thus could pose a threat to aquatic life, fish-eating wildlife, and possibly to humans who consume contaminated fish.

Arizona↗

The shallow stratigraphy and sand resources offshore of the Mississippi Barrier Islands

Coastal Mississippi is protected by a series of barrier islands ranging in length from 10-25 kilometers that are less than 2 kilometers wide. The majority of these islands comprise the Gulf Islands National Seashore (GUIS), an ecologically diverse shoreline that provides habitat for wildlife including migratory birds and endangered animals. The majority of GUIS is submerged, and aquatic environments include dynamic tidal inlets, ebb-tide deltas, and seagrass beds. The islands are in a state of decline, with land areas severely reduced during the past century by storms, sea-level rise, and human alteration. Morton (2008) estimates that since the mid-1800s up to 64 percent of island surface area has been lost. Heavy damage was inflicted in 2005 by Hurricane Katrina, which passed by as a Category 3 storm and battered the islands with winds of more than 160 kilometers per hour and a storm surge up to 9 meters. Since 2007, the U.S. Geological Survey (USGS), in collaboration with the National Park Service, has been mapping the seafloor and substrate around the islands as part of the USGS Northern Gulf of Mexico Ecosystem Change and Hazard Susceptibility project. The purpose of these investigations is to characterize the near-surface stratigraphy and identify the influence it may have on island evolution and fate. In 2009, this effort provided the basis for a collaborative effort with the U.S. Army Corps of Engineers (USACE) to expand the investigation outside of GUIS boundaries as part of the Mississippi Coastal Improvement Project (MsCIP). The MsCIP program consists of structural, nonstructural, and environmental project elements to restore portions of coastal Mississippi and GUIS affected by storm impact. The project includes the placement of sand along the islands, both on the present beaches and within the littoral zone, to mitigate shoreline erosion and breaching. This action requires the location and assessment of offshore sand or sediment deposits that can provide suitable material for shoreline renourishment. The geophysical and sample information collected by the USGS during geologic investigations provides this information. As part of the MsCIP program, in March 2010 the USGS mapped approximately 300 square kilometers of seafloor around GUIS. Interferometric swath bathymetry, sidescan sonar, and Chirp sub-bottom profiling were used to characterize seafloor elevations, texture, and the underlying stratigraphy. On the basis of this information, potential sediment resources were identified. The most promising offshore deposits for beach restoration include shoals, lowstand valley fill, tidal delta deposits, abandoned barrier deposits, and dredge spoil. Of these, lowstand valley fill deposits and dredge spoil are less desirable; lowstand deposits are buried under a 2- to 4-meter blanket of mud, and dredge spoil volume is small. A relict tidal delta and submerged shoals are the most desirable deposits; the tidal delta contains a large volume of material still exposed on the seafloor, and parts of submerged shoals have modest volume and thin mud cover.

Mississippi↗

Version 3.0 of EMINERS - Economic Mineral Resource Simulator

Quantitative mineral resource assessment, as developed by the U.S. Geological Survey (USGS), consists of three parts: (1) development of grade and tonnage mineral deposit models; (2) delineation of tracts permissive for each deposit type; and (3) probabilistic estimation of the numbers of undiscovered deposits for each deposit type. The estimate of the number of undiscovered deposits at different levels of probability is the input to the EMINERS (Economic Mineral Resource Simulator) program. EMINERS uses a Monte Carlo statistical process to combine probabilistic estimates of undiscovered mineral deposits with models of mineral deposit grade and tonnage to estimate mineral resources. Version 3.0 of the EMINERS program is available as this USGS Open-File Report 2004-1344. Changes from version 2.0 include updating 87 grade and tonnage models, designing new templates to produce graphs showing cumulative distribution and summary tables, and disabling economic filters. The economic filters were disabled because embedded data for costs of labor and materials, mining techniques, and beneficiation methods are out of date. However, the cost algorithms used in the disabled economic filters are still in the program and available for reference for mining methods and milling techniques. The release notes included with this report give more details on changes in EMINERS over the years. EMINERS is written in C++ and depends upon the Microsoft Visual C++ 6.0 programming environment. The code depends heavily on the use of Microsoft Foundation Classes (MFC) for implementation of the Windows interface. The program works only on Microsoft Windows XP or newer personal computers. It does not work on Macintosh computers. For help in using the program in this report, see the "Quick-Start Guide for Version 3.0 of EMINERS-Economic Mineral Resource Simulator" (W.J. Bawiec and G.T. Spanski, 2012, USGS Open-File Report 2009-1057, linked at right). It demonstrates how to execute EMINERS software using default settings and existing deposit models.

Open-File Report↗

Discontinuities concentrate mobile predators: Quantifying organism-environment interactions at a seascape scale

Understanding environmental drivers of spatial patterns is an enduring ecological problem that is critical for effective biological conservation. Discontinuities (ecologically meaningful habitat breaks), both naturally occurring (e.g., river confluence, forest edge, drop-off) and anthropogenic (e.g., dams, roads), can influence the distribution of highly mobile organisms that have land- or seascape scale ranges. A geomorphic discontinuity framework, expanded to include ecological patterns, provides a way to incorporate important but irregularly distributed physical features into organism–environment relationships. Here, we test if migratory striped bass ( Morone saxatilis ) are consistently concentrated by spatial discontinuities and why. We quantified the distribution of 50 acoustically tagged striped bass at 40 sites within Plum Island Estuary, Massachusetts during four-monthly surveys relative to four physical discontinuities (sandbar, confluence, channel network, drop-off), one continuous physical feature (depth variation), and a geographic location variable (region). Despite moving throughout the estuary, striped bass were consistently clustered in the middle geographic region at sites with high sandbar area, close to channel networks, adjacent to complex confluences, with intermediate levels of bottom unevenness, and medium sized drop-offs. In addition, the highest striped bass concentrations occurred at sites with the greatest additive physical heterogeneity (i.e., where multiple discontinuities co-occurred). The need to incorporate irregularly distributed features in organism–environment relationships will increase as high-quality telemetry and GIS data accumulate for mobile organisms. The spatially explicit approach we used to address this challenge can aid both researchers who seek to understand the impact of predators on ecosystems and resource managers who require new approaches for biological conservation.

Ecosphere↗

Species‐ and habitat‐specific otolith chemistry patterns inform riverine fisheries management

Geology and hydrology are drivers of water chemistry and thus important considerations for fish otolith chemistry research. However, other factors such as species and habitat identity may have predictive ability, enabling selection of appropriate elemental signatures prior to costly, perhaps unnecessary water/age‐0 fish sampling. The goal of this study was to develop a predictive methodology for using species and habitat identity to design efficient otolith chemistry studies. Duplicate water samples and age‐0 fish were collected from 61 sites in 4 Missouri River reservoirs for walleye Sander vitreus and one impoundment (Lake Sharpe, South Dakota) for other fishes (bluegill Lepomis macrochirus , black crappie Pomoxis nigromaculatus , gizzard shad Dorosoma cepedianum , largemouth bass Micropterus salmoides , smallmouth bass M. dolomieu , white bass Morone chrysops , white crappie P. annularis , and yellow perch Perca flavescens ). Water chemistry (barium:calcium [Ba:Ca], strontium:calcium [Sr:Ca]) was temporally stable, spatially variable, and highly correlated with otolith chemistry for all species except yellow perch. Classification accuracies based on bivariate Ba:Ca and Sr:Ca signatures were high (84% across species) yet varied between floodplain and main‐channel habitats in a species‐specific manner. Thus, to maximize the reliability of otolith chemistry, researchers can use species classifications presented herein to inform habitat selection (e.g., study reservoir‐oriented species such as white bass in main‐channel environments) and habitat‐based classifications to inform species selection (e.g., focus floodplain studies on littoral species such as largemouth bass). Overall, species and habitat identity are important considerations for efficient, effective otolith chemistry studies that inform and advance fisheries and aquatic resource management.

North Dakota, South Dakota↗

Effects of oil development in Arctic America

Large and important discoveries of petroleum were made in northern Alaska in 1968 . The reserves were estimated then to be perhaps as much as ten thousand million barrels. Subsequent exploration has shown the resources to be much greater than was estimated earlier. Many problems must be solved before petroleum from northern Alaska reaches the world's markets. These problems are of three types: 1 , those related to exploring, developing, and operating under the physical environments of the region; 2 , those having to do with people—both the native people and those brought in from lower latitudes—and 3 , those concerning the protection of the natural environments. The problems are great, but so also are the reserves of petroleum. To the extent that the problems are not solved, the cost of development and operation will be higher, the use of people will be expensive and unsatisfactory, and the natural environments will be threatened. The whole effort could be jeopardized on those grounds.

Biological Conservation↗