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At least 865 records · Page 48Linked to original sources

USGS2022

Aquatic vegetation dynamics in the Upper Mississippi River over 2 decades spanning vegetation recovery

Macrophytes have recovered in rivers across the world, but long-term data and studies are lacking regarding community assembly and diversity changes coincident with macrophyte recovery. We investigated patterns of aquatic vegetation species composition and diversity in thousands of sites in the Upper Mississippi River, USA, spanning 21 y of monitoring and a period of vegetation recovery. We analyzed site-level compositional dissimilarity and environmental associations using non-metric multidimensional scaling, compared stability of lake-level assemblages over time with convex hulls, and assessed shared trends in assemblage dissimilarity at the pool scale using dynamic factor analysis. Site-level differences in aquatic vegetation assemblage structure were associated with water depth and substrate, and a gradient of species abundance and diversity was apparent. A common trend in assemblage dissimilarity over time and across contiguous floodplain lakes indicate that assemblage composition changed and diversity increased with considerable synchrony within the past 21 y. Shared trends across the 400-km study reach are indicative of 1 or more widespread, common drivers; however, neither hydrologic extremes nor turbidity explained vegetation assemblage patterns. Following several years of strong changes in composition and increased diversity, the vegetation assemblage displayed signs of increasing stability in some pools but not others. Further research is needed to identify drivers and mechanisms of aquatic vegetation assemblage expansion, assembly, and resilience, all of which will be applicable to the recovery of aquatic vegetation in floodplain systems worldwide.

Illinois, Iowa, Minnesota, Wisconsin↗

USGS2022

Avian-associated Aspergillus fumigatus displays broad phylogenetic distribution, no evidence for host specificity, and multiple genotypes within epizootic events

Birds are highly susceptible to aspergillosis, which can manifest as a primary infection in both domestic and wild birds. Aspergillosis in wild birds causes mortalities ranging in scale from single animals to large-scale epizootic events. However, pathogenicity factors associated with aspergillosis in wild birds have not been examined. Specifically, it is unknown whether wild bird-infecting strains are host-adapted (i.e. phylogenetically related). Similarly, it is unknown whether epizootics are driven by contact with clonal strains that possess unique pathogenic or virulence properties, or by distinct and equally pathogenic strains. Here, we use a diverse collection of Aspergillus fumigatus isolates taken from aspergillosis-associated avian carcasses, representing 24 bird species from a wide geographic range, and representing individual bird mortalities as well as epizootic events. These isolates were sequenced and analyzed along with 130 phylogenetically diverse human clinical isolates to investigate the genetic diversity and phylogenetic placement of avian-associated A. fumigatus , the geographic and host distribution of avian isolates, evidence for clonal outbreaks among wild birds, and the frequency of azole resistance in avian isolates. We found that avian isolates were phylogenetically diverse, with no clear distinction from human clinical isolates, and no sign of host or geographic specificity. Avian isolates from the same epizootic events were diverse and phylogenetically distant, suggesting that avian aspergillosis is not contagious among wild birds and that outbreaks are likely driven by environmental spore loads or host comorbidities. Finally, all avian isolates were susceptible to Voriconazole and none contained the canonical azole resistance gene variants.

G3 Genes|Genomes|Genetics↗

USGS2017

Effects of host species and environment on the skin microbiome of Plethodontid salamanders

The amphibian skin microbiome is recognized for its role in defence against pathogens, including the deadly fungal pathogen Batrachochytrium dendrobatidis (Bd). Yet, we have little understanding of evolutionary and ecological processes that structure these communities, especially for salamanders and closely related species. We investigated patterns in the distribution of bacterial communities on Plethodon salamander skin across host species and environments. Quantifying salamander skin microbiome structure contributes to our understanding of how host-associated bacteria are distributed across the landscape, among host species, and their putative relationship with disease. We characterized skin microbiome structure (alpha-diversity, beta-diversity and bacterial operational taxonomic unit [OTU] abundances) using 16S rRNA gene sequencing for co-occurring Plethodon salamander species (35 Plethodon cinereus , 17 Plethodon glutinosus , 10 Plethodon cylindraceus ) at three localities to differentiate the effects of host species from environmental factors on the microbiome. We sampled the microbiome of P. cinereus along an elevational gradient ( n = 50, 700–1,000 m a.s.l.) at one locality to determine whether elevation predicts microbiome structure. Finally, we quantified prevalence and abundance of putatively anti-Bd bacteria to determine if Bd-inhibitory bacteria are dominant microbiome members. Co-occurring salamanders had similar microbiome structure, but among sites salamanders had dissimilar microbiome structure for beta-diversity and abundance of 28 bacterial OTUs. We found that alpha-diversity increased with elevation, beta-diversity and the abundance of 17 bacterial OTUs changed with elevation (16 OTUs decreasing, 1 OTU increasing). We detected 11 putatively anti-Bd bacterial OTUs that were present on 90% of salamanders and made up an average relative abundance of 83% ( SD ± 8.5) per salamander. All salamanders tested negative for Bd. We conclude that environment is more influential in shaping skin microbiome structure than host differences in these congeneric species, and suggest that environmental characteristics that covary with elevation influence microbiome structure. High prevalence and abundance of anti-Bd bacteria may contribute to low Bd levels in these populations of Plethodon salamanders.

Journal of Animal Ecology↗

USGS2018

Synchrony — An emergent property of recreational fisheries

Recreational fisheries are traditionally managed at local scales, but more effective management could be achieved using a cross‐scale approach. To do this, we must first understand how local processes scale up to influence landscape patterns between anglers and resources. We highlight how population‐based synchrony methods, used in conjunction with a complex‐adaptive‐systems framework, can reveal emergent spatial properties within social‐ecological systems such as recreational fisheries. Herein, we quantified the level of spatial synchrony in angler behaviour, defined the relationship between angler synchrony and distance among waterbodies, and highlighted social‐ecological attributes contributing to these patterns. We leveraged a 111 waterbody‐year (34 waterbodies, 5‐year collection period) recreational fisheries dataset from Nebraska, USA to address these objectives. Intra‐annual patterns in angler behaviour were moderately synchronous across large spatial scales and predominately unrelated to distance among waterbodies. Large‐scale synchronous patterns in angler behaviour emerged from local‐scale interactions between angler heterogeneity and waterbody diversity. Spatial synchrony in angler behaviour is an emergent property that resulted from local‐level processes that scaled up to form large‐scale patterns. We posit that angler utility in combination with waterbodies sharing these desired utility components caused spatial synchrony among anglers with similar preferences or specializations. The level of spatial synchrony in angler behaviour will therefore depend on the degree of angler heterogeneity and waterbody diversity on the landscape, with high or low levels of both leading to low and high levels of spatial synchrony respectively. Synthesis and applications. Synchrony‐based methods proved useful for unveiling an emergent property in recreational fisheries that is beneficial for effective cross‐scale management. It may not be appropriate to extrapolate information and apply uniform management actions among local waterbodies because angler behaviour was not synchronous at small scales. Rather, anglers respond uniquely to waterbody diversity and therefore substitute waterbodies may be dispersed throughout the landscape. Creating boat access, for example could yield unintended consequences for a particular angler group and cause local and regional shifts in angler behaviour. Evaluating appropriate management options will require a cross‐scale monitoring approach that captures angler heterogeneity and waterbody diversity at multiple scales. Recreational fisheries are traditionally managed at local scales, but more effective management could be achieved using a cross‐scale approach. To do this, we must first understand how local processes scale up to influence landscape patterns between anglers and resources. We highlight how population‐based synchrony methods, used in conjunction with a complex‐adaptive‐systems framework, can reveal emergent spatial properties within social‐ecological systems such as recreational fisheries. Herein, we quantified the level of spatial synchrony in angler behaviour, defined the relationship between angler synchrony and distance among waterbodies, and highlighted social‐ecological attributes contributing to these patterns. We leveraged a 111 waterbody‐year (34 waterbodies, 5‐year collection period) recreational fisheries dataset from Nebraska, USA to address these objectives. Intra‐annual patterns in angler behaviour were moderately synchronous across large spatial scales and predominately unrelated to distance among waterbodies. Large‐scale synchronous patterns in angler behaviour emerged from local‐scale interactions between angler heterogeneity and waterbody diversity. Spatial synchrony in angler behaviour is an emergent property that resulted from local‐level processes that scaled up to form large‐scale patterns. We posit that angler

Journal of Applied Ecology↗

USGS2023

Functional traits explain waterbirds’ host status, subtype richness, and community-level infection risk for avian influenza

Species functional traits can influence pathogen transmission processes, and consequently affect species' host status, pathogen diversity, and community-level infection risk. We here investigated, for 143 European waterbird species, effects of functional traits on host status and pathogen diversity (subtype richness) for avian influenza virus at species level. We then explored the association between functional diversity and HPAI H5Nx occurrence at the community level for 2016/17 and 2021/22 epidemics in Europe. We found that both host status and subtype richness were shaped by several traits, such as diet guild and dispersal ability, and that the community-weighted means of these traits were also correlated with community-level risk of H5Nx occurrence. Moreover, functional divergence was negatively associated with H5Nx occurrence, indicating that functional diversity can reduce infection risk. Our findings highlight the value of integrating trait-based ecology into the framework of diversity–disease relationship, and provide new insights for HPAI prediction and prevention.

Ecology Letters↗

USGS2004

Biodiversity and ecosystem functioning: Synthesis and perspectives

Does diversity matter in restored communities? This edited book explores the diversity–function debate, which has raged in ecology during the past several decades. The diversity–function question is relevant in restoration, but the question has not yet received a straightforward hearing in the field of restoration science. None of the authors of this book explicitly relate their ideas to restoration, but the book can educate restorationists about the most recent developments in the diversity–function debate. It is also an excellent book for students to learn about the recent developments and historical background of the diversity–function debate and can be used for graduate-level seminars in restoration or plant ecology.

Restoration Ecology↗

USGS2015

Genetic signatures of historical dispersal of fish threatened by biological invasions: the case of galaxiids in South America

Aim The ecological effects of biological invasions are well documented, but little is known about the effects of invaders on the genetic structure of native species. We examined the phylogeography, genetic variation and population structuring of two galaxiid fishes, Aplochiton zebra and A. taeniatus , threatened by non-native salmonids, and whose conservation is complicated by misidentification and limited knowledge of their genetic diversity. Location Chile and the Falkland Islands. Methods We combined microsatellite and mitochondrial DNA (16S rDNA and COI) markers to compare genetic diversity, effective population size and gene flow of Aplochiton spp. populations differentially affected by salmonid presence. Results We identified two 16S rDNA haplotypes among A. zebra – one dominant in coastal populations and another dominant in inland populations. Populations living on the island of Chiloé displayed a mixture of coastal and inland haplotypes, as well as high microsatellite diversity, as one would expect if the island had been a refugium during the Last Glacial Maximum, or a contact zone among populations. Microsatellite data revealed strong population structuring, indicative of current isolation patterns, and a negative correlation between the genetic diversity of A. zebra and the relative abundance of invasive salmonids. Main conclusions Our study indicates that population structuring of A. zebra reflects the influence of historical patterns of migration, but also the current levels of reduced gene flow among watersheds. Invasive salmonids, known to compete with and prey on native galaxiids, may have had negative impacts on the genetic diversity of Aplochiton spp. The low genetic variation found in some populations, coupled with potential biases in abundance estimates due to species misidentification, highlight the urgent need for more research into the conservation status of the two species of Aplochiton .

Journal of Biogeography↗

USGS2014

Influence of drift and admixture on population structure of American black bears ( Ursus americanus ) in the Central Interior Highlands, USA, 50 years after translocation

Bottlenecks, founder events, and genetic drift often result in decreased genetic diversity and increased population differentiation. These events may follow abundance declines due to natural or anthropogenic perturbations, where translocations may be an effective conservation strategy to increase population size. American black bears ( Ursus americanus ) were nearly extirpated from the Central Interior Highlands, USA by 1920. In an effort to restore bears, 254 individuals were translocated from Minnesota, USA, and Manitoba, Canada, into the Ouachita and Ozark Mountains from 1958 to 1968. Using 15 microsatellites and mitochondrial haplotypes, we observed contemporary genetic diversity and differentiation between the source and supplemented populations. We inferred four genetic clusters: Source, Ouachitas, Ozarks, and a cluster in Missouri where no individuals were translocated. Coalescent models using approximate Bayesian computation identified an admixture model as having the highest posterior probability (0.942) over models where the translocation was unsuccessful or acted as a founder event. Nuclear genetic diversity was highest in the source (A R = 9.11) and significantly lower in the translocated populations (A R = 7.07-7.34; P = 0.004). The Missouri cluster had the lowest genetic diversity (A R = 5.48) and served as a natural experiment showing the utility of translocations to increase genetic diversity following demographic bottlenecks. Differentiation was greater between the two admixed populations than either compared to the source, suggesting that genetic drift acted strongly over the eight generations since the translocation. The Ouachitas and Missouri were previously hypothesized to be remnant lineages. We observed a pretranslocation remnant signature in Missouri but not in the Ouachitas.

Molecular Ecology↗

USGS2025

Low genetic differentiation across restored and natural populations shortly after a large-scale, post-fire seeding in the Great Basin

Genetic diversity is essential for species to adapt to environmental changes. In restoration efforts, such as those after large wildfires in the sagebrush steppe of the Great Basin, commercially produced native seeds are used to revegetate the burned areas. While native seed certification and procurement protocols assure that genetically appropriate seeds are used for restoration, how post-fire seeding affects the genetic integrity of wildland populations at the landscape scale is unknown. To assess the effects of seeding on the genetic diversity of wildland populations, we conducted a genetic survey of Bluebunch wheatgrass ( Pseudoroegneria spicata [Pursh] Á.Löve ssp. Spicata ) populations within the perimeter of a recent megafire in southeastern Oregon and southwestern Idaho, United States. We genotyped 760 samples with 10 polymorphic loci. We found similar genetic diversity in populations four to 5 years after seeding compared to unseeded populations that were either burned or unburned. Furthermore, genetic diversity neither increased nor decreased with distance from the fire's edge, suggesting that wind dispersal from neighboring remnant populations plays a minor role in immediate post-fire recovery compared to resprouting and germination from the seed bank. Though no change was detected in the short term, this survey of genetic variation after a post-fire seeding provides an empirical baseline that can be used to track changes in genetic diversity of these wildland populations over time.

Idaho↗

USGS2017

Genetic composition and connectivity of the Antillean manatee (Trichechus manatus manatus) in Panama

Genetic diversity and haplotype composition of the West Indian manatee (Trichechus manatus) population from the San San Pond Sak wetland in Bocas del Toro, Panama was studied using a segment of mitochondrial DNA (D’loop). No genetic information has been published to date for Panamanian populations. Due to the secretive behavior and small population size of the species in the area, DNA extraction was conducted from opportunistically collected fecal (N=20), carcass tissue (N=4) and bone (N=4) samples. However, after DNA processing only 10 samples provided good quality DNA for sequencing (3 fecal, 4 tissue and 3 bone samples). We found three haplotypes in total; two of these haplotypes are reported for the first time, J02 (N=3) and J03 (N=4), and one J01 was previously published (N=3). Genetic diversity showed similar values to previous studies conducted in other Caribbean regions with moderate values of nucleotide diversity (π= 0.00152) and haplotipic diversity (Hd= 0.57). Connectivity assessment was based on sequence similarity, genetic distance and genetic differentiation between San San population and other manatee populations previously studied. The J01 haplotype found in the Panamanian population is shared with populations in the Caribbean mainland and the Gulf of Mexico showing a reduced differentiation corroborated with Fst value between HSSPS and this region of 0.0094. In contrast, comparisons between our sequences and populations in the Eastern Caribbean (South American populations) and North Western Caribbean showed fewer similarities (Fst =0.049 and 0.058, respectively). These results corroborate previous phylogeographic patterns already established for manatee populations and situate Panamanian populations into the Belize and Mexico cluster. In addition, these findings will be a baseline for future studies and comparisons with manatees in other areas of Panama and Central America. These results should be considered to inform management decisions regarding conservation of genetic diversity, future controlled introductions, connectivity and effective population size of the West Indian manatee along the Central American corridor.

Bocas del Toro↗

USGS2012

Climatic forcing of Quaternary deep-sea benthic communities in the North Pacific Ocean

There is growing evidence that changes in deep-sea benthic ecosystems are modulated by climate changes, but most evidence to date comes from the North Atlantic Ocean. Here we analyze new ostracod and published foraminiferal records for the last 250,000 years on Shatsky Rise in the North Pacific Ocean. Using linear models, we evaluate statistically the ability of environmental drivers (temperature, productivity, and seasonality of productivity) to predict changes in faunal diversity, abundance, and composition. These microfossil data show glacial-interglacial shifts in overall abundances and species diversities that are low during glacial intervals and high during interglacials. These patterns replicate those previously documented in the North Atlantic Ocean, suggesting that the climatic forcing of the deep-sea ecosystem is widespread, and possibly global in nature. However, these results also reveal differences with prior studies that probably reflect the isolated nature of Shatsky Rise as a remote oceanic plateau. Ostracod assemblages on Shatsky Rise are highly endemic but of low diversity, consistent with the limited dispersal potential of these animals. Benthic foraminifera, by contrast, have much greater dispersal ability and their assemblages at Shatsky Rise show diversities typical for deep-sea faunas in other regions. Statistical analyses also reveal ostracod-foraminferal differences in relationships between environmental drivers and biotic change. Rarefied diversity is best explained as a hump-shaped function of surface productivity in ostracods, but as having a weak and positive relationship with temperature in foraminifera. Abundance shows a positive relationship with both productivity and seasonality of productivity in foraminifera, and a hump-shaped relationship with productivity in ostracods. Finally, species composition in ostracods is influenced by both temperature and productivity, but only a temperature effect is evident in foraminifera. Though complex in detail, the global-scale link between deep-sea ecosystems and Quaternary climate changes underscores the importance of the interaction between the physical and biological components of paleoceanographical research for better understanding the history of the biosphere.

Paleobiology↗

USGS1998

Forest floor bryophytes of Pseudotsuga menziesii-Tsuga heterophylla stand in Oregon: Influences of substrate and overstory

Species richness and abundance of bryophytes inhabiting forest floor substrates were assessed at two sites in western Oregon. Bryophyte diversity, abundance, and community composition were compared between sites, and between young forest stands (~55 yrs) and old-growth stands (400 + yrs) within each site. Relationships of stand structural features to diversity and community composition were assessed by stratifying sampling between "diversity" plots placed in areas of greater structural diversity, such as hardwood openings and remnant old-growth trees, and "matrix" plots situated within the remaining more homogeneous conifer-dominated forest matrix. Richness, particularly for liverworts, was significantly higher in old-growth than young stands, and the two ages differed significantly in community composition. Substrate (ground versus coarse woody debris) and overstory (conifers versus hardwoods) were most strongly correlated with variation in community composition. Relatively open hardwood-dominated diversity plots differed in composition from matrix plots. Bryophyte abundance was lower in denser stands and plots, and positively correlated with canopy gaps, percentage of hardwoods, and incident solar radiation. These results suggest that availability of light may limit bryophyte productivity in these stands.

Bryologist↗

USGS2009

Evaluation of Restoration Methods to Minimize Canada Thistle (Cirsium arvense) Infestation

The National Wildlife Refuge System has an active habitat restoration program and annually seeds thousands of hectares with native plant species. The noxious weed, Canada thistle (Cirsium arvense), plagues these restorations. This study evaluates planting methodology and seed mixes with the goal of recommending optimal methods to reduce infestation of noxious weeds, especially Canada thistle, in new restorations. Three planting methods (dormant season broadcast, growing season [summer] broadcast, and growing season [summer] drill) were fully crossed with three levels of seed diversity (10, 20, and 34 species [plus a fourth level, 58 species, on the three sites in Iowa]) in a completely randomized design replicated on nine sites in Minnesota and Iowa. The propagule bank of Canada thistle was evaluated at each site. Planting occurred in winter 2004 and spring-summer 2005. Here I report on results through summer 2007. None of the planting methods or seed mix diversities consistently resulted in reduced abundance of Canada thistle. Soil texture had the strongest influence; sites with greater proportions of clay had greater frequency and cover of Canada thistle than did sandy sites. At the Minnesota study sites, the dormant broadcast planting method combined with the highest seed diversity resulted in both the greatest cover of planted species as well as the greatest richness of planted species. At the Iowa sites, planted species richness was slightly greater in the summer drill plots, but cover of planted species was greatest in the dormant broadcast plots. Richness of planted species at the Iowa sites was maximized in the high diversity plots, with the extra-high diversity seed mix resulting in significantly lower species richness. Individual species responded to planting methods idiosyncratically, which suggests that particular species could be favored by tailoring planting methods to that species.

Open-File Report↗

USGS2018

Population genomic surveys for six rare plant species in San Diego County, California

San Diego County is a hotspot of biodiversity, situated at the intersection of the Baja peninsula, the California floristic province, and the desert southwest. This hotspot is characterized by a high number of rare and endemic species, which persist alongside a major urban epicenter. San Diego County has implemented a strategic management plan that identifies species, based on low numbers of occurrences or high level of threat, for which management practices are recommended. In creating a management plan for rare species, it is important to strike a balance between preserving locally adapted traits and maintaining genetic diversity, as species’ ranges fluctuate in response to a changing climate and habitat fragmentation. This project, in partnership with the San Diego Natural History Museum, aims to provide a reference point for the current status of genetic diversity of rare plant species that will inform future preservation and restoration efforts. We focused on six threatened or endangered plant species: Acanthomintha ilicifolia , Baccharis vanessae , Chloropyron maritimum ssp. maritimum , Deinandra conjugens , Dicranostegia orcuttiana , and Monardella viminea . For each species, botanists from the San Diego Natural History Museum visited all known occurrences in San Diego County and collected leaf tissue for genetic and cytological analysis. We then developed a panel of genetic markers to estimate genetic diversity and population structure. This population genetic survey provided insight into the amount of genetic differentiation across each species’ range, identified isolated occurrences potentially subject to inbreeding or genetic bottlenecks, and identified areas that are rich sources of allelic diversity. Finally, we convened a panel of experts to review results and compatible management options for each species. A summary of the management workshop is included in this report. Overall, we found low genetic differentiation among occurrences across the San Diego region for all species, with the exception of A. ilicifolia . Relative inbreeding was low and consistent across sites, and genetic diversity across sites was variable, with noted exceptions. These findings allow for a wide array of management options that are compatible with panmictic population structure in five of the six surveyed species.

California↗

USGS1994

Evaluation of methods for delineating areas that contribute water to wells completed in valley-fill aquifers in Pennsylvania

Valley-fill aquifers in Pennsylvania are the source of drinking water for many wells in the glaciated parts of the State and along major river valleys. These aquifers area subject to contamination because of their shallow water-table depth and highly transmissive sediments. The possibility for contamination of water-supply wells in valley-fill aquifers can be minimized by excluding activities that could contaminate areas that contribute water to supply wells. An area that contributes water to a well is identified in this report as either an area of diversion, time-of-travel area, or contributing area. The area of diversion is a projection to land surface of the valley-fill aquifer volume through which water is diverted to a well and the time-of travel area is that fraction of the area of diversion through which water moves to the well in a specified time. The contributing area, the largest of three areas, includes the area of diversion but also incorporates bedrock uplands and other area that contribute water. Methods for delineating areas of diversion and contributing areas in valley-fill aquifers, described and compared in order of increasing complexity, include fixed radius, uniform flow, analytical, semianalytical, and numerical modeling. Delineated areas are considered approximations because the hydraulic properties and boundary conditions of the real ground-water system are simplified even in the most complex numerical methods. Successful application of any of these methods depends on the investigator's understanding of the hydrologic system in and near the well field, and the limitations of the method. The hydrologic system includes not only the valley-fill aquifer but also the regional surface-water and ground-water flow systems within which the valley is situated. As shown by numerical flow simulations of a well field in the valley-fill aquifer along Marsh Creek Valley near Asaph, Pa., water from upland bedrock sources can provide nearly all the water contributed to the well.

Open-File Report↗

USGS2006

An assessment of flow data from Klamath River sites between Link River Dam and Keno Dam, south-central Oregon

Records of diversion and return flows for water years 1961?2004 along a reach of the Klamath River between Link River and Keno Dams in south-central Oregon were evaluated to determine the cause of a water-balance inconsistency in the hydrologic data. The data indicated that the reach was losing flow in the 1960s and 1970s and gaining flow in the 1980s and 1990s. The absolute mean annual net water-balance difference in flows between the first and second half of the 44-year period (1961-2004) was approximately 103,000 acre-feet per year (acre-ft/yr). The quality of the diversion and return-flow records used in the water balance was evaluated using U.S. Geological Survey (USGS) criteria for accuracy. With the exception of the USGS Klamath River at Keno record, which was rated as 'good' or 'excellent,' the eight other flow records, all from non-USGS flow-measurement sites, were rated as 'poor' by USGS standards due to insufficient data-collection documentation and a lack of direct discharge measurements to verify the rating curves. The record for the Link River site, the most upstream in the study area, included both river and westside power canal flows. Because of rating curve biases, the river flows might have been overestimated by 25,000 acre-ft/yr on average from water years 1961 to 1982 and underestimated by 7,000 acre-ft/yr on average from water years 1983 to 2004. For water years 1984-2004, westside power canal flows might have been underestimated by 11,000 acre-ft/yr. Some diversion and return flows (for mostly agricultural, industrial, and urban use) along the Klamath River study reach, not measured continuously and not included in the water-balance equation, also were evaluated. However, the sum of these diversion and return flows was insufficient to explain the water-balance inconsistency. The possibility that ground-water levels in lands adjacent to the river rose during water years 1961-2004 and caused an increase in ground-water discharge to the river also was evaluated. However, water-level data from local wells did not have a rising trend during the period. The most likely cause of the water-balance inconsistency was flow measurement error in the eight non-USGS flow records. Part of the water-balance inconsistency can be explained by a 43,000 acre-foot error in the river and canal flow portions of the Link River flow record. A remaining 60,000 acre-foot error might have been distributed among the seven other flow records, or much of the remaining 60,000 acre-foot error might have been in the Link River flow record because flows in that record had a greater magnitude than flows in the seven other records. As an additional analysis of the water-balance issue, flow records used in the water balance were evaluated for trends and compared to known changes in water management in the Bureau of Reclamation Klamath Project and Lower Klamath and Tule Lake National Wildlife Refuges over the 44-year period. Many of the water-management changes were implemented in the early 1980s. For three diversion flow records, 1983-2004 mean annual flows were 16,000, 8,000, and 21,000 acre-ft/yr greater than their 1961-82 mean annual flows. Return flows to the Klamath River at two flow-measurement sites decreased by 31,000 and 27,000 acre-ft/yr for 1983-2004 compared with the 1961-82 period.

Scientific Investigations Report↗

USGS2007

Geochemical effects of induced stream-water and artificial recharge on the Equus Beds Aquifer, South-Central Kansas, 1995-2004

Artificial recharge of the Equus Beds aquifer is part of a strategy implemented by the city of Wichita, Kansas, to preserve future water supply and address declining water levels in the aquifer of as much as 30 feet caused by withdrawals for water supply and irrigation since the 1940s. Water-level declines represent a diminished water supply and also may accelerate migration of saltwater from the Burrton oil field to the northwest and the Arkansas River to the southwest into the freshwater of the Equus Beds aquifer. Artificial recharge, as a part of the Equus Beds Ground-Water Recharge Project, involves capturing flows larger than base flow from the Little Arkansas River and recharging the water to the Equus Beds aquifer by means of infiltration or injection. The geochemical effects on the Equus Beds aquifer of induced stream-water and artificial recharge at the Halstead and Sedgwick sites were determined through collection and analysis of hydrologic and water-quality data and the application of statistical, mixing, flow and solute-transport, and geochemical model simulations. Chloride and atrazine concentrations in the Little Arkansas River and arsenic concentrations in ground water at the Halstead recharge site frequently exceeded regulatory criteria. During 30 percent of the time from 1999 through 2004, continuous estimated chloride concentrations in the Little Arkansas River at Highway 50 near Halstead exceeded the Secondary Drinking-Water Regulation of 250 milligrams per liter established by the U.S. Environmental Protection Agency. Chloride concentrations in shallow monitoring wells located adjacent to the stream exceeded the drinking-water criterion five times from 1995 through 2004. Atrazine concentrations in water sampled from the Little Arkansas River had large variability and were at or near the drinking-water Maximum Contaminant Level of 3.0 micrograms per liter as an annual average established by the U.S. Environmental Protection Agency. Atrazine concentrations were much smaller than the drinking-water criterion and were detected at much smaller concentrations in shallow monitoring wells and diversion well water located adjacent to the stream probably because of sorption on aquifer sediment. Before and after artificial recharge, large, naturally occurring arsenic concentrations in the recharge water for the Halstead diversion well and recharge site exceeded the Maximum Contaminant Level of 10 micrograms per liter established by the U.S. Environmental Protection Agency for drinking water. Arsenic and iron concentrations decreased when water was recharged through recharge basins or a trench; however, chemical precipitation and potential biofouling eventually may decrease the artificial recharge efficiency through basins and trenches. At the Sedgwick site, chloride concentrations infrequently exceeded regulatory criteria. Large concentrations of atrazine were treated to decrease concentrations to less than regulatory criteria. Recharge of treated stream water through recharge basins avoids potentially large concentrations of arsenic and iron that exist at the Halstead diversion site. Results from a simple mixing model using chloride as a tracer indicated that the water chemistry in shallow monitoring well located adjacent to the Little Arkansas River was 80 percent of stream water, demonstrating effective recharge of the alluvial aquifer by the stream. Results also indicated that about 25 percent of the water chemistry of the diversion well water was from the shallow part of the aquifer. Additionally, diverting water through a diversion well located adjacent to the stream removed about 75 percent of the atrazine, probably through sorption to aquifer sediment, and decreased the need for additional water treatment to remove atrazine.

Kansas↗

USGS2009

Water Budgets of the Walker River Basin and Walker Lake, California and Nevada

The Walker River is the main source of inflow to Walker Lake, a closed-basin lake in west-central Nevada. The only outflow from Walker Lake is evaporation from the lake surface. Between 1882 and 2008, upstream agricultural diversions resulted in a lake-level decline of more than 150 feet and storage loss of 7,400,000 acre-feet. Evaporative concentration increased dissolved solids from 2,500 to 17,000 milligrams per liter. The increase in salinity threatens the survival of the Lahontan cutthroat trout, a native species listed as threatened under the Endangered Species Act. This report describes streamflow in the Walker River basin and an updated water budget of Walker Lake with emphasis on the lower Walker River basin downstream from Wabuska, Nevada. Water budgets are based on average annual flows for a 30-year period (1971-2000). Total surface-water inflow to the upper Walker River basin upstream from Wabuska was estimated to be 387,000 acre-feet per year (acre-ft/yr). About 223,000 acre-ft/yr (58 percent) is from the West Fork of the Walker River; 145,000 acre-ft/yr (37 percent) is from the East Fork of the Walker River; 17,000 acre-ft/yr (4 percent) is from the Sweetwater Range; and 2,000 acre-ft/yr (less than 1 percent) is from the Bodie Mountains, Pine Grove Hills, and western Wassuk Range. Outflow from the upper Walker River basin is 138,000 acre-ft/yr at Wabuska. About 249,000 acre-ft/yr (64 percent) of inflow is diverted for irrigation, transpired by riparian vegetation, evaporates from lakes and reservoirs, and recharges alluvial aquifers. Stream losses in Antelope, Smith, and Bridgeport Valleys are due to evaporation from reservoirs and agricultural diversions with negligible stream infiltration or riparian evapotranspiration. Diversion rates in Antelope and Smith Valleys were estimated to be 3.0 feet per year (ft/yr) in each valley. Irrigated fields receive an additional 0.8 ft of precipitation, groundwater pumpage, or both for a total applied-water rate of 3.8 ft/yr. The average corrected total evapotranspiration rate for alfalfa is 3.2 ft/yr so about 0.6 ft/yr (15 percent) flushes salts from the soil. The diversion rate in Bridgeport Valley was estimated to be 1.1 ft/yr and precipitation is 1.3 ft/yr. The total applied-water rate of 2.4 ft/yr is used to irrigate pasture grass. The total applied water rate in the East Fork of the Walker River and Mason Valley was estimated to be 4.8 ft/yr in each valley. The higher rate likely is due to appreciable infiltration, riparian evapotranspiration, or both. Assuming a diversion rate of 3.0 ft/yr, stream loss due to infiltration and riparian evapotranspiration is about 3,000 acre-ft/yr along the East Fork of the Walker River and 14,000 acre-ft/yr in Mason Valley. In the lower Walker River basin, overall and groundwater budgets were calculated for Wabuska to Schurz, Nev., and Schurz to Walker Lake. An overall water budget was calculated for the combined reaches. Imbalances in the water budgets range from 1 to 7 percent, which are insignificant statistically, so the water budgets balance. Total inflow to the Wabuska-Walker Lake reach from the river and others sources is 140,000 acre-ft/yr. Stream and subsurface discharge into the northern end of Walker Lake totals 110,000 acre-ft/yr. About 30,000 acre-ft/yr is lost on the Walker River Indian Reservation from agricultural evapotranspiration, evapotranspiration by native and invasive vegetation, domestic pumpage, and subsurface outflow from the basin through Double Spring and the Wabuska lineament. Alfalfa fields in the upper Walker River basin are lush and have an average corrected total evapotranspiration rate of 3.2 ft/yr. Alfalfa fields on the Walker River Indian Reservation are not as lush and have a total corrected evapotranspiration rate of 1.6-2.1 ft/yr, which partly could be due to alkaline soils that were submerged by Pleistocene Lake Lahontan. The total applied-water rate is 7.0 ft/yr, almost twice the

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