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Development and description of a composite hydrogeologic framework for inclusion in a geoenvironmental assessment of undiscovered uranium resources in Pliocene- to Pleistocene-age geologic units of the Texas Coastal Plain

A previously completed mineral resources assessment of the Texas Coastal Plain indicated the potential for the future discovery of uranium resources. Geoenvironmental assessments that include the hydrogeologic framework can be used as a tool to understand the potential effects of mining operations. The hydrogeologic framework for this study focused on the composite hydrogeologic unit of the tract permissive for the occurrence of uranium consisting of the upper part of the Miocene-age Fleming Formation/Lagarto Clay, Pliocene-age Goliad and Pleistocene-age Willis Sands, Pleistocene-age Lissie and Beaumont Formations, and Holocene-age alluvial sediments (fluvial alluvium and eolian sand deposits). This composite hydrogeologic unit, which contains the Chicot and Evangeline aquifers of the Gulf Coast aquifer system, is intended for inclusion in a regional-scale geoenvironmental assessment of as yet undiscovered uranium resources. This article provides (1) a brief literature review describing the geologic and hydrogeologic settings, (2) the methodology used to develop a composite hydrogeologic framework, and (3) descriptions and maps of the land-surface altitude, composite hydrogeologic unit base and midpoint depth, water-level altitude, depth of water, unsaturated and saturated zone thickness, and transmissivity and hydraulic conductivity. A composite hydrogeologic unit, created by combining geologic and hydrogeologic data and maps for individual geologic and hydrogeologic units, is intended for use as a tool in a geoenvironmental assessment to evaluate potential contaminant migration through various avenues. Potential applications include using the hydrogeologic framework as an input into a geoenvironmental assessment to help estimate the potential for (1) runoff of contaminants into surface water, (2) infiltration of contaminants into the groundwater (aquifers), or (3) movement of contaminants from the mining area through wind, groundwater-flow, or streamflow in a given permissive tract. The procedures outlined in this paper also provide a method for developing hydrogeologic frameworks that can be applied in other areas where mining may occur.

Texas

The Coastal Imaging Research Network (CIRN)

The Coastal Imaging Research Network (CIRN) is an international group of researchers who exploit signatures of phenomena in imagery of coastal, estuarine, and riverine environments. CIRN participants develop and implement new coastal imaging methodologies. The research objective of the group is to use imagery to gain a better fundamental understanding of the processes shaping those environments. Coastal imaging data may also be used to derive inputs for model boundary and initial conditions through assimilation, to validate models, and to make management decisions. CIRN was officially formed in 2016 to provide an integrative, multi-institutional group to collaborate on remotely sensed data techniques. As of 2021, the network is a collaboration between researchers from approximately 16 countries and includes investigators from universities, government laboratories and agencies, non-profits, and private companies. CIRN has a strong emphasis on education, exemplified by hosting annual “boot camps” to teach photogrammetry fundamentals and toolboxes from the CIRN code repository, as well as hosting an annual meeting for its members to present coastal imaging research. In this review article, we provide context for the development of CIRN as well as describe the goals and accomplishments of the CIRN community. We highlight components of CIRN’s resources for researchers worldwide including an open-source GitHub repository and coding boot camps. Finally, we provide CIRN’s perspective on the future of coastal imaging.

Remote Sensing

Automated quantification of surface water inundation in wetlands using optical satellite imagery

We present a fully automated and scalable algorithm for quantifying surface water inundation in wetlands. Requiring no external training data, our algorithm estimates sub-pixel water fraction (SWF) over large areas and long time periods using Landsat data. We tested our SWF algorithm over three wetland sites across North America, including the Prairie Pothole Region, the Delmarva Peninsula and the Everglades, representing a gradient of inundation and vegetation conditions. We estimated SWF at 30-m resolution with accuracies ranging from a normalized root-mean-square-error of 0.11 to 0.19 when compared with various high-resolution ground and airborne datasets. SWF estimates were more sensitive to subtle inundated features compared to previously published surface water datasets, accurately depicting water bodies, large heterogeneously inundated surfaces, narrow water courses and canopy-covered water features. Despite this enhanced sensitivity, several sources of errors affected SWF estimates, including emergent or floating vegetation and forest canopies, shadows from topographic features, urban structures and unmasked clouds. The automated algorithm described in this article allows for the production of high temporal resolution wetland inundation data products to support a broad range of applications.

Remote Sensing

Training conservation practitioners to be better decision makers

Traditional conservation curricula and training typically emphasizes only one part of systematic decision making ( i.e. , the science), at the expense of preparing conservation practitioners with critical skills in values-setting, working with decision makers and stakeholders, and effective problem framing. In this article we describe how the application of decision science is relevant to conservation problems and suggest how current and future conservation practitioners can be trained to be better decision makers. Though decision-analytic approaches vary considerably, they all involve: (1) properly formulating the decision problem; (2) specifying feasible alternative actions; and (3) selecting criteria for evaluating potential outcomes. Two approaches are available for providing training in decision science, with each serving different needs. Formal education is useful for providing simple, well-defined problems that allow demonstrations of the structure, axioms and general characteristics of a decision-analytic approach. In contrast, practical training can offer complex, realistic decision problems requiring more careful structuring and analysis than those used for formal training purposes. Ultimately, the kinds and degree of training necessary depend on the role conservation practitioners play in a decision-making process. Those attempting to facilitate decision-making processes will need advanced training in both technical aspects of decision science and in facilitation techniques, as well as opportunities to apprentice under decision analysts/consultants. Our primary goal should be an attempt to ingrain a discipline for applying clarity of thought to all decisions.

Sustainability

Timescale methods for simplifying, understanding and modeling biophysical and water quality processes in coastal aquatic ecosystems: A review

In this article, we describe the use of diagnostic timescales as simple tools for illuminating how aquatic ecosystems work, with a focus on coastal systems such as estuaries, lagoons, tidal rivers, reefs, deltas, gulfs, and continental shelves. Intending this as a tutorial as well as a review, we discuss relevant fundamental concepts (e.g., Lagrangian and Eulerian perspectives and methods, parcels, particles, and tracers), and describe many of the most commonly used diagnostic timescales and definitions. Citing field-based, model-based, and simple algebraic methods, we describe how physical timescales (e.g., residence time, flushing time, age, transit time) and biogeochemical timescales (e.g., for growth, decay, uptake, turnover, or consumption) are estimated and implemented (sometimes together) to illuminate coupled physical-biogeochemical systems. Multiple application examples are then provided to demonstrate how timescales have proven useful in simplifying, understanding, and modeling complex coastal aquatic systems. We discuss timescales from the perspective of “holism”, the degree of process richness incorporated into them, and the value of clarity in defining timescales used and in describing how they were estimated. Our objective is to provide context, new applications and methodological ideas and, for those new to timescale methods, a starting place for implementing them in their own work.

Water

An analysis of streamflow trends in the southern and southeastern US from 1950-2015

In this article, the mean daily streamflow at 139 streamflow-gaging stations (sites) in the southern and southeastern United States are analyzed for spatial and temporal patterns. One hundred and thirty-nine individual time-series of mean daily streamflow were reduced to five aggregated time series of Z scores for clusters of sites with similar temporal variability. These aggregated time-series correlated significantly with a time-series of several climate indices for the period 1950–2015. The mean daily streamflow data were subset into six time periods—starting in 1950, 1960, 1970, 1980, 1990, and 2000, and each ending in 2015, to determine how streamflow trends at individual sites acted over time. During the period 1950–2015, mean monthly and seasonal streamflow decreased at many sites based on results from traditional Mann–Kendall trend analyses, as well as results from a new analysis (Quantile-Kendall) that summarizes trends across the full range of streamflows. A trend departure index used to compare results from non-reference with reference sites identified that streamflow trends at 88% of the study sites have been influenced by non-climatic factors (such as land- and water-management practices) and that the majority of these sites were located in Texas, Louisiana, and Georgia. Analysis of the results found that for sites throughout the study area that were influenced primarily by climate rather than human activities, the step increase in streamflow in 1970 documented in previous studies was offset by subsequent monotonic decreases in streamflow between 1970 and 2015. View Full-Text

Alabama, Arkansas, Florida, Georgia, Louisiana, Mi

America's most wanted fishes: Cataloging risk assessments to prioritize invasive species for management action

Hundreds of fish species enter the United States through human intervention (e.g., importation) and some of these fishes pose a substantial risk to the nation’s assets and ecosystems. Prevention, early detection, and rapid response (EDRR) are vital to stop species invasions, but time and resources to manage the large suite of fish species that enter the nation are limited. Evaluating the risk of a species’ invasion in a location is one way to prioritize among many species for management action. Species risk assessments are often associated with information systems or are published within grey literature or peer-reviewed journal articles. Improving access to available risk assessments could help in prioritizing management action for the most potentially invasive fish species. We aggregated fish species risk assessments, synthesizing the current knowledge on the risk of fish invasions in the United States. To accomplish this, we searched information systems and conducted a literature review. We then summarized risk assessment results along with the importation statuses of fish species and identified if imported, high-risk species are managed under federal or state policy. Within the scope of the conterminous U.S., we found 98 high-risk fish species. Eighteen of these species are imported to the country, but only three species have been recently prohibited from importation according to the Lacey Act. We observed similar patterns at the scales of the Great Lakes region and Florida. Collectively, our work provides a baseline estimate of the high-risk fish invaders that enter the U.S. through importation, underscoring species to consider for priority management action, as well as a benchmark of species that lack risk assessments. Insights from this work can be enriched when joined with other invasive species information, which could be accomplished through a national EDRR information system, an information sharing hub in development by the U.S. Geological Survey.

Management of Biological Invasions

Information on black-footed ferret biology collected within the framework of ferret conservation

Once feared to be extinct, black-footed ferrets ( Mustela nigripes ) were rediscovered near Meeteetse, Wyoming, in 1981, resulting in renewed conservation and research efforts for this highly endangered species. A need for information directly useful to recovery has motivated much monitoring of ferrets since that time, but field activities have enabled collection of data relevant to broader biological themes. This special feature is placed in a context of similar books and proceedings devoted to ferret biology and conservation. Articles include general observations on ferrets, modeling of potential impacts of ferrets on prairie dogs ( Cynomys spp.), discussions on relationships of ferrets to prairie dog habitats at several spatial scales (from individual burrows to patches of burrow systems) and a general treatise on the status of black-footed ferret recovery.

Wyoming

Black-tailed and white-tailed jackrabbits in the American West: History, ecology, ecological significance, and survey methods

Across the western United States, Leporidae are the most important prey item in the diet of Golden Eagles ( Aquila chrysaetos ). Leporids inhabiting the western United States include black-tailed ( Lepus californicus ) and white-tailed jackrabbits ( Lepus townsendi i) and various species of cottontail rabbit ( Sylvilagus spp.). Jackrabbits ( Lepus spp.) are particularly important components of the ecological and economic landscape of western North America because their abundance influences the reproductive success and population trends of predators such as coyotes ( Canis latrans ), bobcats ( Lynx rufus ), and a number of raptor species. Here, we review literature pertaining to black-tailed and white-tailed jackrabbits comprising over 170 published journal articles, notes, technical reports, conference proceedings, academic theses and dissertations, and other sources dating from the late 19th century to the present. Our goal is to present information to assist those in research and management, particularly with regard to protected raptor species (e.g., Golden Eagles), mammalian predators, and ecological monitoring. We classified literature sources as (1) general information on jackrabbit species, (2) black-tailed or (3) white-tailed jackrabbit ecology and natural history, or (4) survey methods. These categories, especially 2, 3, and 4, were further subdivided as appropriate. The review also produced several tables on population trends, food habits, densities within various habitats, and jackrabbit growth and development. Black-tailed and white-tailed jackrabbits are ecologically similar in general behaviors, use of forms, parasites, and food habits, and they are prey to similar predators; but they differ in their preferred habitats. While the black-tailed jackrabbit inhabits agricultural land, deserts, and shrublands, the white-tailed jackrabbit is associated with prairies, alpine tundra, and sagebrush-steppe. Frequently considered abundant, jackrabbit numbers in western North America fluctuate temporally and spatially. We also reviewed methods used to investigate jackrabbit populations, including spotlight line transects, flushing transects, drive counts, pellet plot counts, collections, roadside counts, mark-recapture studies, and radio-telemetry studies. Our review of jackrabbit literature illustrates a number of deficiencies in our understanding of jackrabbits in general. As an example, a detailed quantitative description of habitat preferences is lacking, as is a thorough understanding of sympatric jackrabbit species interactions. Even the existence of the oft-cited jackrabbit “cycle” is a matter of debate. Survey methods generally do not address efficacy or accuracy in measuring jackrabbit density or abundance. In addition, there is a paucity of information about jackrabbits in the Mojave Desert, with no real understanding of home ranges, habitat preferences, and population dynamics or demographics in this region.

Arizona, California, Colorado, Idaho, Iowa, Kansas

The Mars Orbiter for Resources, Ices, and Environments (MORIE) science goals and instrument trades in radar, imaging, and spectroscopy

The Mars Orbiter for Resources, Ices, and Environments (MORIE) was selected as one of NASA's 2019 Planetary Mission Concept Studies. The mission builds upon recent discoveries and current knowledge gaps linked to two primary scientific questions: (1) when did elements of the cryosphere form and how are ice deposits linked to current, recent, and ancient climate, and (2) how does the crust record the evolution of surface environments and their transition through time? Addressing these questions has emerged in numerous recent reports as a high priority in investigating the evolution of Mars as a habitable world. A subsidiary goal of the mission concept is to provide information relevant to the eventual human exploration of Mars, specifically helping to locate and quantify near-surface water ice and hydrated mineral resources. The proposed instrument suite includes polarimetric synthetic aperture radar imaging, radar sounding, high-resolution visible and infrared imaging, both short-wave and thermal-infrared spectroscopy, and multichannel wide-angle imaging. MORIE would provide novel measurements of Mars expected to lead to significant new discoveries by the first radar imaging from orbit, radar sounding directly over the poles, and mineral mapping at spatial scales that will unravel geologic sequence stratigraphy through time. The final report of the mission concept provides details on the spacecraft, orbital design, technological maturity, results from systems-level integration studies, and costs. This article is intended to expand upon the science motivation for the mission, the measurement goals and objectives, and the instrument trade space that was examined in detail during the concept study.

The Planetary Science Journal

A reproducible manuscript workflow with a Quarto template

Scientists and resource managers increasingly use Markdown-based tools to create reproducible reports and manuscripts. These workflows allow people to use standardized methods that are more reproducible, efficient, and transparent than other standard office tools. We present a Quarto template and demonstrate how this template may be used for a journal, the Journal of Fish and Wildlife Management , in our article. This template may also be readily adapted to other journals that use Microsoft Word-based workflows and for other product types such as annual reports. We also provide a high-level overview of Quarto and other Markdown-based workflows as part of the document. Lastly, we provide examples of some features of the Quarto publishing system that may be helpful for authors when customizing Quarto templates for specific journal formatting requirements and other product types.

Journal of Fish and Wildlife Management

Endophytic bacteria in grass crop growth promotion and biostimulation

Plants naturally carry microbes on seeds and within seeds that may facilitate development and early survival of seedlings. Some crops have lost seed-vectored microbes in the process of domestication or during seed storage and seed treatment. Biostimulant microbes from wild plants were used by pre-modern cultures to re-acquire beneficial seed microbes. Today some companies have developed or are developing the use of microbes obtained from soils or plant sources to stimulate plant development and growth. Many of these biostimulant microbes are endophytic in plants. Biostimulant products also include humic substances, which appear to function as signal molecules in plants, triggering increased internalization of soil microbes into root cells and tissues. In addition, protein coatings on seeds fuel the growth of seed surface-vectored microbes, increasing microbial activity around and within roots. In this article, we provide evidence of the endophytic nature of many biostimulant microbes, and suggest that many of the beneficial effects of microbial biostimulants stem from their action as endophytes or as participants or stimulants of rhizophagy cycle activity.

Grass Research

Late Holocene history of Chaitén Volcano: new evidence for a 17 th century eruption

Prior to May 2008, it was thought that the last eruption of Chaitén Volcano occurred more than 5,000 years ago, a rather long quiescent period for a volcano in such an active arc segment. However, increasingly more Holocene eruptions are being identified. This article presents both geological and historical evidence for late Holocene eruptive activity in the 17th century (AD 1625-1658), which included an explosive rhyolitic eruption that produced pumice ash fallout east of the volcano and caused channel aggradation in the Chaitén River. The extents of tephra fall and channel aggradation were similar to those of May 2008. Fine ash, pumice and obsidian fragments in the pre-2008 deposits are unequivocally derived from Chaitén Volcano. This finding has important implications for hazards assessment in the area and suggests the eruptive frequency and magnitude should be more thoroughly studied.

Chait�n

Delivering integrated HAZUS-MH flood loss analyses and flood inundation maps over the Web

Catastrophic flooding is responsible for more loss of life and damages to property than any other natural hazard. Recently developed flood inundation mapping technologies make it possible to view the extent and depth of flooding on the land surface over the Internet; however, by themselves these technologies are unable to provide estimates of losses to property and infrastructure. The Federal Emergency Management Agency’s (FEMA's) HAZUS-MH software is extensively used to conduct flood loss analyses in the United States, providing a nationwide database of population and infrastructure at risk. Unfortunately, HAZUS-MH requires a dedicated Geographic Information System (GIS) workstation and a trained operator, and analyses are not adapted for convenient delivery over the Web. This article describes a cooperative effort by the US Geological Survey (USGS) and FEMA to make HAZUS-MH output GIS and Web compatible and to integrate these data with digital flood inundation maps in USGS’s newly developed Inundation Mapping Web Portal. By running the computationally intensive HAZUS-MH flood analyses offline and converting the output to a Web-GIS compatible format, detailed estimates of flood losses can now be delivered to anyone with Internet access, thus dramatically increasing the availability of these forecasts to local emergency planners and first responders.

Journal of Emergency Management

Synoptic analysis of a decade of daily measurements of SO2 emission in the troposphere from volcanoes of the global ground-based Network for Observation of Volcanic and Atmospheric Change

Volcanic plumes are common and far-reaching manifestations of volcanic activity during and between eruptions. Observations of the rate of emission and composition of volcanic plumes are essential to recognize and, in some cases, predict the state of volcanic activity. Measurements of the size and location of the plumes are important to assess the impact of the emission from sporadic or localized events to persistent or widespread processes of climatic and environmental importance. These observations provide information on volatile budgets on Earth, chemical evolution of magmas, and atmospheric circulation and dynamics. Space-based observations during the last decades have given us a global view of Earth's volcanic emission, particularly of sulfur dioxide ( SO 2 ). Although none of the satellite missions were intended to be used for measurement of volcanic gas emission, specially adapted algorithms have produced time-averaged global emission budgets. These have confirmed that tropospheric plumes, produced from persistent degassing of weak sources, dominate the total emission of volcanic SO 2 . Although space-based observations have provided this global insight into some aspects of Earth's volcanism, it still has important limitations. The magnitude and short-term variability of lower-atmosphere emissions, historically less accessible from space, remain largely uncertain. Operational monitoring of volcanic plumes, at scales relevant for adequate surveillance, has been facilitated through the use of ground-based scanning differential optical absorption spectrometer (ScanDOAS) instruments since the beginning of this century, largely due to the coordinated effort of the Network for Observation of Volcanic and Atmospheric Change (NOVAC). In this study, we present a compilation of results of homogenized post-analysis of measurements of SO 2 flux and plume parameters obtained during the period March 2005 to January 2017 of 32 volcanoes in NOVAC. This inventory opens a window into the short-term emission patterns of a diverse set of volcanoes in terms of magma composition, geographical location, magnitude of emission, and style of eruptive activity. We find that passive volcanic degassing is by no means a stationary process in time and that large sub-daily variability is observed in the flux of volcanic gases, which has implications for emission budgets produced using short-term, sporadic observations. The use of a standard evaluation method allows for intercomparison between different volcanoes and between ground- and space-based measurements of the same volcanoes. The emission of several weakly degassing volcanoes, undetected by satellites, is presented for the first time. We also compare our results with those reported in the literature, providing ranges of variability in emission not accessible in the past. The open-access data repository introduced in this article will enable further exploitation of this unique dataset, with a focus on volcanological research, risk assessment, satellite-sensor validation, and improved quantification of the prevalent tropospheric component of global volcanic emission.

Earth System Science Data

Trans-Amazon Drilling Project (TADP): origins and evolution of the forests, climate, and hydrology of the South American tropics

This article presents the scientific rationale for an ambitious ICDP drilling project to continuously sample Late Cretaceous to modern sediment in four different sedimentary basins that transect the equatorial Amazon of Brazil, from the Andean foreland to the Atlantic Ocean. The goals of this project are to document the evolution of plant biodiversity in the Amazon forests and to relate biotic diversification to changes in the physical environment, including climate, tectonism, and the surface landscape. These goals require long sedimentary records from each of the major sedimentary basins across the heart of the Brazilian Amazon, which can only be obtained by drilling because of the scarcity of Cenozoic outcrops. The proposed drilling will provide the first long, nearly continuous regional records of the Cenozoic history of the forests, their plant diversity, and the associated changes in climate and environment. It also will address fundamental questions about landscape evolution, including the history of Andean uplift and erosion as recorded in Andean foreland basins and the development of west-to-east hydrologic continuity between the Andes, the Amazon lowlands, and the equatorial Atlantic. Because many modern rivers of the Amazon basin flow along the major axes of the old sedimentary basins, we plan to locate drill sites on the margin of large rivers and to access the targeted drill sites by navigation along these rivers.

Amazon region

Incorporating climate change into restoration decisions: Perspectives from dam removal practitioners

Incorporating climate change into conservation and restoration decisions is increasingly important for natural resource managers and restoration practitioners to effectively address the underlying drivers of ecosystem change. Small dam removal is an example of a restoration tool that may offer multiple socioeconomic and ecological benefits in streams, including promoting climate resilience. With the pace of dam removals increasing, practitioners and researchers are well-poised to incorporate climate change into future dam removal decisions. Therefore, we surveyed dam removal practitioners across 14 states in the eastern United States to understand current practices of small dam removals, factors driving restoration decisions, and how climate change knowledge is incorporated into these decisions. We also aimed to identify barriers to and opportunities for knowledge exchange between practitioners and researchers. Of the 100 respondents, most (79%) consider climate change in their dam removal decisions to some extent. Despite this, many reported a lack of clear, relevant, and accessible data linking small dam removal to climate resilience benefits. Dam removal practitioners also indicated that they most often rely on climate change information garnered from conversations with colleagues, rather than from scientific research products. These results suggest that the co-production of relevant, salient research questions and readily accessible and interpretable research products (e.g., technical summaries, open access articles) may encourage practitioners to incorporate climate change science more consistently and efficiently into dam removal decisions. These findings may also translate to other stream restoration efforts to inform knowledge exchange and improve restoration outcomes in a changing climate.

Connecticut, Delaware, Kentucky, Maine, Maryland,

Terrestrial ecosystem modeling with IBIS: Progress and future vision

Dynamic Global Vegetation Models (DGVM) are powerful tools for studying complicated ecosystem processes and global changes. This review article synthesizes the developments and applications of the Integrated Biosphere Simulator (IBIS), a DGVM, over the past two decades. IBIS has been used to evaluate carbon, nitrogen, and water cycling in terrestrial ecosystems, vegetation changes, land-atmosphere interactions, land-aquatic system integration, and climate change impacts. Here we summarize model development work since IBIS v2.5, covering hydrology (evapotranspiration, groundwater, lateral routing), vegetation dynamics (plant functional type, land cover change), plant physiology (phenology, photosynthesis, carbon allocation, growth), biogeochemistry (soil carbon and nitrogen processes, greenhouse gas emissions), impacts of natural disturbances (drought, insect damage, fire) and human induced land use changes, and computational improvements. We also summarize IBIS model applications around the world in evaluating ecosystem productivity, carbon and water budgets, water use efficiency, natural disturbance effects, and impacts of climate change and land use change on the carbon cycle. Based on this review, visions of future cross-scale, cross-landscape and cross-system model development and applications are discussed.

Journal of Resources and Ecology