Search USGS⌕ Search

SEARCH · Search USGS

Results for “Test”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 847 records · Page 47Linked to original sources
USGS2004

Is predation on waterfowl nests density dependent? Tests at three spatial scales

We tested whether predation on duck nests ( Anas spp.) was density dependent at three spatial scales using artificial and natural nests in the Suisun Marsh, California, USA. At the largest spatial scale, we used 5 years (1998–2002) of data to examine the natural variation in duck nest success and nest densities among 8–16 fields per year, each 5–33 ha in size (n=62 fields). At an intermediate spatial scale, we deployed artificial nests (2000, n=280) within 1-ha plots at three experimental densities (5, 10, and 20 nests ha −1 ) in a complete randomized block design and examined differences in nest predation. At the smallest spatial scale, we examined nest success in relation to nearest-neighbor fates and distances for artificial (2000, n=280) and natural nests (2000, n=507). We detected no relationship between nest success and the density of natural nests among fields in any year, nor when we pooled data for all years after controlling for year effects. The proportion of artificial nests that survived also did not depend on experimental nest densities within 1-ha plots. Overall, 15.0±12.4%, 15.0±11.0%, and 6.2±4.3% of artificial nests survived the 32-day exposure period in the low, intermediate, and high nest densities, respectively. Additionally, we detected no consistent effect of nearest-neighbor fate or distance on the success of artificial or natural nests. Thus, our results provide no evidence of density-dependent predation on duck nests at any scale of analysis, in contrast to a number of previous studies. Variation among geographical locations in the degree to which predation is density-dependent may reflect the composition of the predator community and the availability of alternate prey.

Oikos↗
USGS2010

Evidence for a temperature acclimation mechanism in bacteria: an empirical test of a membrane-mediated trade-off

1. Shifts in bacterial community composition along temporal and spatial temperature gradients occur in a wide range of habitats and have potentially important implications for ecosystem functioning. However, it is often challenging to empirically link an adaptation or acclimation that defines environmental niche or biogeography with a quantifiable phenotype, especially in micro-organisms. 2. Here we evaluate a possible mechanistic explanation for shifts in bacterioplankton community composition in response to temperature by testing a previously hypothesized membrane mediated trade-off between resource acquisition and respiratory costs. 3. We isolated two strains of Flavobacterium sp. at two temperatures (cold isolate and warm isolate) from the epilimnion of a small temperate lake in North Central Minnesota. 4. Compared with the cold isolate the warm isolate had higher growth rate, higher carrying capacity, lower lag time and lower respiration at the high temperature and lower phosphorus uptake at the low temperature. We also observed significant differences in membrane lipid composition between isolates and between environments that were consistent with adjustments necessary to maintain membrane fluidity at different temperatures. 5. Our results suggest that temperature acclimation in planktonic bacteria is, in part, a resource-dependent membrane-facilitated phenomenon. This study provides an explicit example of how a quantifiable phenotype can be linked through physiology to competitive ability and environmental niche.

Functional Ecology↗
USGS2008

Population genetic structure in Atlantic and Pacific Ocean common murres ( Uria aalge ): Natural replicate tests of post-Pleistocene evolution

Understanding the factors that influence population differentiation in temperate taxa can be difficult because the signatures of both historic and contemporary demographics are often reflected in population genetic patterns. Fortunately, analyses based on coalescent theory can help untangle the relative influence of these historic and contemporary factors. Common murres ( Uria aalge ) are vagile seabirds that breed in the boreal and low arctic waters of the Northern Hemisphere. Previous analyses revealed that Atlantic and Pacific populations are genetically distinct; however, less is known about population genetic structure within ocean basins. We employed the mitochondrial control region, four microsatellite loci and four intron loci to investigate population genetic structure throughout the range of common murres. As in previous studies, we found that Atlantic and Pacific populations diverged during the Pleistocene and do not currently exchange migrants. Therefore, Atlantic and Pacific murre populations can be used as natural replicates to test mechanisms of population differentiation. While we found little population genetic structure within the Pacific, we detected significant east-west structuring among Atlantic colonies. The degree that population genetic structure reflected contemporary population demographics also differed between ocean basins. Specifically, while the low levels of population differentiation in the Pacific are at least partially due to high levels of contemporary gene flow, the east-west structuring of populations within the Atlantic appears to be the result of historic fragmentation of populations rather than restricted contemporary gene flow. The contrasting results in the Atlantic and Pacific Oceans highlight the necessity of carefully considering multilocus nonequilibrium population genetic approaches when reconstructing the demographic history of temperate Northern Hemisphere taxa. ?? 2008 The Authors.

Molecular Ecology↗
USGS2012

Structure and mechanism of diet specialisation: testing models of individual variation in resource use with sea otters

Studies of consumer-resource interactions suggest that individual diet specialisation is empirically widespread and theoretically important to the organisation and dynamics of populations and communities. We used weighted networks to analyze the resource use by sea otters, testing three alternative models for how individual diet specialisation may arise. As expected, individual specialisation was absent when otter density was low, but increased at high-otter density. A high-density emergence of nested resource-use networks was consistent with the model assuming individuals share preference ranks. However, a density-dependent emergence of a non-nested modular network for ‘core’ resources was more consistent with the ‘competitive refuge’ model. Individuals from different diet modules showed predictable variation in rank-order prey preferences and handling times of core resources, further supporting the competitive refuge model. Our findings support a hierarchical organisation of diet specialisation and suggest individual use of core and marginal resources may be driven by different selective pressures.

California↗
USGS2005

Basal tissue structure in the earliest euconodonts: Testing hypotheses of developmental plasticity in euconodont phylogeny

The hypothesis that conodonts are vertebrates rests solely on evidence of soft tissue anatomy. This has been corroborated by microstructural, topological and developmental evidence of homology between conodont and vertebrate hard tissues. However, these conclusions have been reached on the basis of evidence from highly derived euconodont taxa and the degree to which they are representative of plesiomorphic euconodonts remains an open question. Furthermore, the range of variation in tissue types comprising the euconodont basal body has been used to establish a hypothesis of developmental plasticity early in the phylogeny of the clade, and a model of diminishing potentiality in the evolution of development systems. The microstructural fabrics of the basal tissues of the earliest euconodonts (presumed to be the most plesiomorphic) are examined to test these two hypotheses. It is found that the range of microstructural variation observed hitherto was already apparent among plesiomorphic euconodonts. Thus, established histological data are representative of the most plesiomorphic euconodonts. However, although there is evidence of a range in microstructural fabrics, these are compatible with the dentine tissue system alone, and the degree of variation is compatible with that seen in clades of comparable diversity. ?? The Palaeontological Association.

Palaeontology↗
USGS2012

Ecosystem engineering varies spatially: a test of the vegetation modification paradigm for prairie dogs

Colonial, burrowing herbivores can be engineers of grassland and shrubland ecosystems worldwide. Spatial variation in landscapes suggests caution when extrapolating single-place studies of single species, but lack of data and the need to generalize often leads to ‘model system’ thinking and application of results beyond appropriate statistical inference. Generalizations about the engineering effects of prairie dogs ( Cynomys sp.) developed largely from intensive study at a single complex of black-tailed prairie dogs C. ludovicianus in northern mixed prairie, but have been extrapolated to other ecoregions and prairie dog species in North America, and other colonial, burrowing herbivores. We tested the paradigm that prairie dogs decrease vegetation volume and the cover of grasses and tall shrubs, and increase bare ground and forb cover. We sampled vegetation on and off 279 colonies at 13 complexes of 3 prairie dog species widely distributed across 5 ecoregions in North America. The paradigm was generally supported at 7 black-tailed prairie dog complexes in northern mixed prairie, where vegetation volume, grass cover, and tall shrub cover were lower, and bare ground and forb cover were higher, on colonies than at paired off-colony sites. Outside the northern mixed prairie, all 3 prairie dog species consistently reduced vegetation volume, but their effects on cover of plant functional groups varied with prairie dog species and the grazing tolerance of dominant perennial grasses. White-tailed prairie dogs C. leucurus in sagebrush steppe did not reduce shrub cover, whereas black-tailed prairie dogs suppressed shrub cover at all complexes with tall shrubs in the surrounding habitat matrix. Black-tailed prairie dogs in shortgrass steppe and Gunnison's prairie dogs C. gunnisoni in Colorado Plateau grassland both had relatively minor effects on grass cover, which may reflect the dominance of grazing-tolerant shortgrasses at both complexes. Variation in modification of vegetation structure may be understood in terms of the responses of different dominant perennial grasses to intense defoliation and differences in foraging behavior among prairie dog species. Spatial variation in the engineering role of prairie dogs suggests spatial variation in their keystone role, and spatial variation in the roles of other ecosystem engineers. Thus, ecosystem engineering can have a spatial component not evident from single-place studies.

Ecography: Pattern and Diversity in Ecology↗
USGS2006

Bioenergetic relations in submerged aquatic vegetation: An experimental test of prey use by juvenile bluegills

We experimentally tested the hypotheses that bluegills in vegetated habitats grow more rapidly than in nonvegetated habitats because (1) vegetated habitats contain a greater caloric density and (2) are less susceptible to energetic depletion. The 10-week experiment was conducted in enclosures containing factorial combinations of the presence or absence of Vallisneria americana and juvenile bluegills Lepomis macrochirus. After 6 weeks, Vallisneria-only treatments contained a mean of 1048 cal/m2 in the benthos, whereas treatments with both Vallisneria and bluegills contained 610 cal/m2. Hyalella azteca, a preferred prey of bluegill, were nearly depleted in nonvegetated enclosures, whereas Hyalella densities in enclosures with Vallisneria were much less effected by fish. Bluegill growth was significantly greater with Vallisneria than without but declining water temperatures after week 6 resulted in slower growth despite abundant prey. Ultimately, growth of bluegill resulted from an interaction between availability and ingestion of prey, and water temperature. ?? Munksgaard, 1998.

Ecology of Freshwater Fish↗
USGS2006

Test hold in aquifer with many water-bearing zones at Jacksonville, Florida

One of the deepest water ‐exploration wells in the southeastern United States was completed in 1966 at Jacksonville , Florida . It was drilled to a depth of nearly 2,500 feet to supply geologic and hydrologic information on the deeper unexplored part of the Floridan aquifer . This aquifer consists of a series of water producing zones separated by nonproducing zones . An important new fresh‐ water producing zone was found, and the contact between the fresh water and salt water was located. The well was completed in three separate zones so that it could be used to monitor the the deeper part of the aquifer to detect any salt‐ water encroachment. This paper describes the objectives, techniques, and results of drilling the test well.

Florida↗
USGS2013

A multilocus evaluation of ermine ( Mustela erminea ) across the Holarctic, testing hypotheses of Pleistocene diversification in response to climate change

Aim: We examined data for ermine (Mustela erminea) to test two sets of diversification hypotheses concerning the number and location of late Pleistocene refugia, the timing and mode of diversification, and the evolutionary influence of insularization. Location: Temperate and sub-Arctic Northern Hemisphere. Methods: We used up to two mitochondrial and four nuclear loci from 237 specimens for statistical phylogeographical and demographic analyses. Coalescent species-tree estimation used a Bayesian approach for clade divergence based on external mutation rate calibrations. Approximate Bayesian methods were used to assess population size, timing of divergence and gene flow. Results: Limited structure coupled with evidence of population growth across broad regions, including previously ice-covered areas, indicated expansion from multiple centres of differentiation, but high endemism along the North Pacific coast (NPC). A bifurcating model of diversification with recent growth spanning three glacial cycles best explained the empirical data. Main conclusions: A newly identified clade in North America indicated a fourth refugial area for ermine. The shallow coalescence of all extant ermine reflects a recent history of diversification overlying a deeper fossil record. Post-glacial colonization has led to potential contact zones for multiple lineages in north-western North America. A model of diversification of ermine accompanied by recent gene flow was marginally less well supported than a model of divergence of major clades in response to the most recent glacial cycles.

Journal of Biogeography↗
USGS2014

Testing metapopulation concepts: effects of patch characteristics and neighborhood occupancy on the dynamics of an endangered lagomorph

Metapopulation ecology is a field that is richer in theory than in empirical results. Many existing empirical studies use an incidence function approach based on spatial patterns and key assumptions about extinction and colonization rates. Here we recast these assumptions as hypotheses to be tested using 18 years of historic detection survey data combined with four years of data from a new monitoring program for the Lower Keys marsh rabbit. We developed a new model to estimate probabilities of local extinction and colonization in the presence of nondetection, while accounting for estimated occupancy levels of neighboring patches. We used model selection to identify important drivers of population turnover and estimate the effective neighborhood size for this system. Several key relationships related to patch size and isolation that are often assumed in metapopulation models were supported: patch size was negatively related to the probability of extinction and positively related to colonization, and estimated occupancy of neighboring patches was positively related to colonization and negatively related to extinction probabilities. This latter relationship suggested the existence of rescue effects. In our study system, we inferred that coastal patches experienced higher probabilities of extinction and colonization than interior patches. Interior patches exhibited higher occupancy probabilities and may serve as refugia, permitting colonization of coastal patches following disturbances such as hurricanes and storm surges. Our modeling approach should be useful for incorporating neighbor occupancy into future metapopulation analyses and in dealing with other historic occupancy surveys that may not include the recommended levels of sampling replication.

Florida↗
USGS2009

Using the Sonoran Desert test site to monitor the long-term radiometric stability of the Landsat TM/ETM+ and Terra MODIS sensors

Pseudo-invariant ground targets have been extensively used to monitor the long-term radiometric calibration stability of remote sensing instruments. The NASA MODIS Characterization Support Team (MCST), in collaboration with members from the U.S. Geological Survey (USGS) Earth Resources Observation and Science (EROS) Center, has previously demonstrated the use of pseudo-invariant ground sites for the long-term stability monitoring of Terra MODIS and Landsat 7 ETM+ sensors. This paper focuses on the results derived from observations made over the Sonoran Desert. Additionally, Landsat 5 TM data over the Sonoran Desert site were used to evaluate the temporal stability of this site. Top-ofatmosphere (TOA) reflectances were computed for the closely matched TM, ETM+, and MODIS spectral bands over selected regions of interest. The impacts due to different viewing geometries, or the effect of test site Bi-directional Reflectance Distribution Function (BRDF), are also presented. ?? 2009 SPIE.

Conference Paper↗
USGS2012

SYBR green-based real-time reverse transcription-PCR for typing and subtyping of all hemagglutinin and neuraminidase genes of avian influenza viruses and comparison to standard serological subtyping tests

Continuing outbreaks of H5N1 highly pathogenic (HP) avian influenza virus (AIV) infections of wild birds and poultry worldwide emphasize the need for global surveillance of wild birds. To support the future surveillance activities, we developed a SYBR green-based, real-time reverse transcriptase PCR (rRT-PCR) for detecting nucleoprotein (NP) genes and subtyping 16 hemagglutinin (HA) and 9 neuraminidase (NA) genes simultaneously. Primers were improved by focusing on Eurasian or North American lineage genes; the number of mixed-base positions per primer was set to five or fewer, and the concentration of each primer set was optimized empirically. Also, 30 cycles of amplification of 1:10 dilutions of cDNAs from cultured viruses effectively reduced minor cross- or nonspecific reactions. Under these conditions, 346 HA and 345 NA genes of 349 AIVs were detected, with average sensitivities of NP, HA, and NA genes of 10 1.5 , 10 2.3 , and 10 3.1 50% egg infective doses, respectively. Utility of rRT-PCR for subtyping AIVs was compared with that of current standard serological tests by using 104 recent migratory duck virus isolates. As a result, all HA genes and 99% of the NA genes were genetically subtyped, while only 45% of HA genes and 74% of NA genes were serologically subtyped. Additionally, direct subtyping of AIVs in fecal samples was possible by 40 cycles of amplification: approximately 70% of HA and NA genes of NP gene-positive samples were successfully subtyped. This validation study indicates that rRT-PCR with optimized primers and reaction conditions is a powerful tool for subtyping varied AIVs in clinical and cultured samples.

Journal of Clinical Microbiology↗
USGS2000

Superposed fold-thrust events at the Nevada Test Site

The Nevada Test Site (NTS), in southern Nye County, Nevada, straddles significant pre-Tertiary structural and stratigraphic boundaries. Detailed stratigraphy and biostratigraphy of the Upper Paleozoic section delineates the regional trust sheets and constrains their burial histories. The Paleozoic rocks record three phases of contractional deformation, overprinted by strike-slip faulting. These occurred in the folloing order: (1) foreland-vergant folding and imbricate thrusting in the footwall of the Belted Range thrust; (2) hinterland-vergent folding and thrusting; and (3) north-vergant folding that we interpret as footwall deformation below a third major thrust system. Sinistral slip, typically accompanied by minor east-west shortening, has occurred along a series of north-northeast--north-northwest--striking faults around Yucca Flat. This strike-slip faulting postdates both foreland-vergent and hinterland-vergent deformation, and predates the Cretaceous Climax stock; its age relative to the north-vergent folding and thrusting is unknown. Our new understanding of the geometry of these structures provides new insights into the correlation and interpretation of regional structural features. Field trip stops will examine: (1) the stratigraphic differences that allow us to distinguish the regional thrust sheets and constrain their burial histories; and (2) the field relationships that document the kinematics and relative ages of the penetrative deformational events.

Nevada↗
USGS2013

Testing the use of microfossils to reconstruct great earthquakes at Cascadia

Coastal stratigraphy from the Pacific Northwest of the United States contains evidence of sudden subsidence during ruptures of the Cascadia subduction zone. Transfer functions (empirical relationships between assemblages and elevation) can convert microfossil data into coastal subsidence estimates. Coseismic deformation models use the subsidence values to constrain earthquake magnitudes. To test the response of foraminifera, the accuracy of the transfer function method, and the presence of a pre-seismic signal, we simulated a great earthquake near Coos Bay, Oregon, by transplanting a bed of modern high salt-marsh sediment into the tidal flat, an elevation change that mimics a coseismic subsidence of 0.64 m. The transplanted bed was quickly buried by mud; after 12 mo and 5 yr, we sampled it for foraminifera. Reconstruction of the simulated coseismic subsidence using our transfer function was 0.61 m, nearly identical to the actual elevation change. Our transplant experiment, and additional analyses spanning the A.D. 1700 earthquake contact at the nearby Coquille River 15 km to the south, show that sediment mixing may explain assemblage changes previously interpreted as evidence of pre-seismic land-level change in Cascadia and elsewhere.

Geology↗
USGS2021

Testing models of Laramide orogenic initiation by investigation of Late Cretaceous magmatic-tectonic evolution of the central Mojave sector of the California arc

The Mojave Desert region is in a critical position for assessing models of Laramide orogenesis, which is hypothesized to have initiated as one or more seamounts subducted beneath the Cretaceous continental margin. Geochronological and geochemical characteristics of Late Cretaceous magmatic products provide the opportunity to test the validity of Laramide orogenic models. Laramide-aged plutons are exposed along a transect across the Cordilleran Mesozoic magmatic system from Joshua Tree National Park in the Eastern Transverse Ranges eastward into the central Mojave Desert. A transect at latitude ∼33.5°N to 34.5°N includes: (1) the large upper-crustal Late Cretaceous Cadiz Valley batholith, (2) a thick section of Proterozoic to Jurassic host rocks, (3) Late Cretaceous stock to pluton-sized bodies at mesozonal depths, and (4) a Jurassic to Late Cretaceous midcrustal sheeted complex emplaced at ∼20 km depth that transitions into a migmatite complex truncated along the San Andreas fault. This magmatic section is structurally correlative with the Big Bear Lake intrusive suite in the San Bernardino Mountains and similar sheeted rocks recovered in the Cajon Pass Deep Scientific Drillhole. Zircon U-Pb geochronology of 12 samples via secondary ionization mass spectrometry (SIMS) (six from the Cadiz Valley batholith and six from the Cajon Pass Deep Scientific Drillhole) indicates that all Cretaceous igneous units investigated were intruded between 83 and 74 Ma, and Cajon Pass samples include a Jurassic age component. A compilation of new and published SIMS geochronological data demonstrates that voluminous magmatism in the Eastern Transverse Ranges and central Mojave Desert was continuous throughout the period suggested for the intersection and flat-slab subduction of the Shatsky Rise conjugate deep into the interior of western North America. Whole-rock major-element, trace-element, and isotope geochemistry data from samples from a suite of 106 igneous rocks represent the breadth of Late Cretaceous units in the transect. Geochemistry indicates an origin in a subduction environment and intrusion into a crust thick enough to generate residual garnet. The lack of significant deflections of compositional characteristics and isotopic ratios in igneous products through space and time argues against a delamination event prior to 74 Ma. We argue that Late Cretaceous plutonism from the Eastern Transverse Ranges to the central Mojave Desert represents subduction zone arc magmatism that persisted until ca. 74 Ma. This interpretation is inconsistent with the proposed timing of the docking of the Shatsky Rise conjugate with the margin of western North America, particularly models in which the leading edge of the Shatsky Rise was beneath Wyoming at 74 Ma. Alternatively, the timing of cessation of plutonism precedes the timing of the passage of the Hess Rise conjugate beneath western North America at ca. 70–65 Ma. The presence, geochemical composition, and age of arc products in the Eastern Transverse Ranges and central Mojave Desert region must be accounted for in any tectonic model of the transition from Sevier to Laramide orogenesis.

California↗
USGS2020

Latitudinal variation in snowshoe hare (Lepus americanus) body mass: A test of Bergmann’s Rule

The relationship between body size and latitude have been the focus of dozens of studies across many species. However, results of testing Bergmann’s Rule – that organisms in colder climates or at higher latitudes possess larger body sizes – have been inconsistent across studies. We investigated whether snowshoe hares (Lepus americanus) follow the Rule by investigating differences in body mass using data from six published studies and from data of 755 individual hares captured from ten populations across North America covering 26° of latitude. We also explored alternative hypotheses related to variation in hare body mass, including winter severity, length of growing season, elevation, and snow depth. We found body mass of hares varied throughout their range, but the drivers of body mass differed based on geographic location. Females in northern populations followed Bergmann’s rule, whereas males did not. In northern populations male mass was related to average snow depth. In contrast, in southern populations body mass of both sexes was related to length of the growing season. These differences likely represent variation in the drivers of selection. Specifically, in the north, a large body size is beneficial to conserve heat because of low winter temperatures, whereas in the south, it is likely due to increased food supply associated with longer growing seasons.

Canadian Journal of Zoology↗
USGS2011

Testing a bioenergetics-based habitat choice model: bluegill ( Lepomis macrochirus ) responses to food availability and temperature

Using an automated shuttlebox system, we conducted patch choice experiments with 32, 8–12 g bluegill sunfish ( Lepomis macrochirus ) to test a behavioral energetics hypothesis of habitat choice. When patch temperature and food levels were held constant within patches but different between patches, we expected bluegill to choose patches that maximized growth based on the bioenergetic integration of food and temperature as predicted by a bioenergetics model. Alternative hypotheses were that bluegill may choose patches based only on food (optimal foraging) or temperature (behavioral thermoregulation). The behavioral energetics hypothesis was not a good predictor of short-term (from minutes to weeks) patch choice by bluegill; the behavioral thermoregulation hypothesis was the best predictor. In the short-term, food and temperature appeared to affect patch choice hierarchically; temperature was more important, although food can alter temperature preference during feeding periods. Over a 19-d experiment, mean temperatures occupied by fish offered low rations did decline as predicted by the behavioral energetics hypothesis, but the decline was less than 1.0 °C as opposed to a possible 5 °C decline. A short-term, bioenergetic response to food and temperature may be precluded by physiological costs of acclimation not considered explicitly in the behavioral energetics hypothesis.

Canadian Journal of Fisheries and Aquatic Sciences↗