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USGS1987

Guidelines for using the Delphi Technique to develop habitat suitability index curves

Habitat Suitability Index (SI) curves are one method of presenting species habitat suitability criteria. The curves are often used with the Habitat Evaluation Procedures (HEP) and are necessary components of the Instream Flow Incremental Methodology (IFIM) (Armour et al. 1984). Bovee (1986) described three categories of SI curves or habitat suitability criteria based on the procedures and data used to develop the criteria. Category I curves are based on professional judgment, with 1ittle or no empirical data. Both Category II (utilization criteria) and Category III (preference criteria) curves have as their source data collected at locations where target species are observed or collected. Having Category II and Category III curves for all species of concern would be ideal. In reality, no SI curves are available for many species, and SI curves that require intensive field sampling often cannot be developed under prevailing constraints on time and costs. One alternative under these circumstances is the development and interim use of SI curves based on expert opinion. The Delphi technique (Pill 1971; Delbecq et al. 1975; Linstone and Turoff 1975) is one method used for combining the knowledge and opinions of a group of experts. The purpose of this report is to describe how the Delphi technique may be used to develop expert-opinion-based SI curves.

FWS/OBS↗

USGS2000

A comparison of solute-transport solution techniques based on inverse modelling results

Five common numerical techniques (finite difference, predictor-corrector, total-variation-diminishing, method-of-characteristics, and modified-method-of-characteristics) were tested using simulations of a controlled conservative tracer-test experiment through a heterogeneous, two-dimensional sand tank. The experimental facility was constructed using randomly distributed homogeneous blocks of five sand types. This experimental model provides an outstanding opportunity to compare the solution techniques because of the heterogeneous hydraulic conductivity distribution of known structure, and the availability of detailed measurements with which to compare simulated concentrations. The present work uses this opportunity to investigate how three common types of results-simulated breakthrough curves, sensitivity analysis, and calibrated parameter values-change in this heterogeneous situation, given the different methods of simulating solute transport. The results show that simulated peak concentrations, even at very fine grid spacings, varied because of different amounts of numerical dispersion. Sensitivity analysis results were robust in that they were independent of the solution technique. They revealed extreme correlation between hydraulic conductivity and porosity, and that the breakthrough curve data did not provide enough information about the dispersivities to estimate individual values for the five sands. However, estimated hydraulic conductivity values are significantly influenced by both the large possible variations in model dispersion and the amount of numerical dispersion present in the solution technique.Five common numerical techniques (finite difference, predictor-corrector, total-variation-diminishing, method-of-characteristics, and modified-method-of-characteristics) were tested using simulations of a controlled conservative tracer-test experiment through a heterogeneous, two-dimensional sand tank. The experimental facility was constructed using randomly distributed homogeneous blocks of five sand types. This experimental model provides an outstanding opportunity to compare the solution techniques because of the heterogeneous hydraulic conductivity distribution of known structure, and the availability of detailed measurements with which to compare simulated concentrations. The present work uses this opportunity to investigate how three common types of results - simulated breakthrough curves, sensitivity analysis, and calibrated parameter values - change in this heterogeneous situation, given the different methods of simulating solute transport. The results show that simulated peak concentrations, even at very fine grid spacings, varied because of different amounts of numerical dispersion. Sensitivity analysis results were robust in that they were independent of the solution technique. They revealed extreme correlation between hydraulic conductivity and porosity, and that the breakthrough curve data did not provide enough information about the dispersivities to estimate individual values for the five sands. However, estimated hydraulic conductivity values are significantly influenced by both the large possible variations in model dispersion and the amount of numerical dispersion present in the solution technique.

Conference Paper↗

USGS2025

Toward an efficient framework for remote sensing of river bathymetry: Comparing sensors and algorithms on an inaccessible proglacial river in Alaska

Remote sensing can provide reliable information on river depths and this approach might be particularly valuable in areas that are difficult to survey via conventional field methods. In this study, we assessed the potential to map the bathymetry of an inaccessible proglacial river in Alaska from both aerial orthophotos and a multispectral satellite image. In addition, we evaluated a variety of depth retrieval algorithms with different input data requirements, including some methods that require field measurements of water depth for calibration and other techniques that can be applied even when such field data are not available. These approaches might enable more efficient use of remote sensing methods by resource management agencies. Our results suggest that bathymetric mapping along the turquoise-colored river we examined was not only feasible but highly accurate ( R 2 up to 0.94) for both types of image data. Algorithms that use paired observations of depth and reflectance to train depth retrieval models were the most accurate, with errors on the order of 15%–20% and little or no bias. Alternative techniques based on hydraulic and statistical concepts also led to strong agreement between predicted and observed depths but were more susceptible to systematic biases toward under- or over-estimation of depth. In contrast to clear-flowing streams, bathymetric mapping in this environment was enabled by a direct relationship between the depth and brightness of the water due to scattering by suspended sediment. In selecting an appropriate depth retrieval method, a compromise might need to be reached between the level of field effort invested and the accuracy of the resulting image-derived bathymetry. Standalone software for implementing these techniques is freely available.

Alaska↗

USGS2006

A variance-decomposition approach to investigating multiscale habitat associations

The recognition of the importance of spatial scale in ecology has led many researchers to take multiscale approaches to studying habitat associations. However, few of the studies that investigate habitat associations at multiple spatial scales have considered the potential effects of cross-scale correlations in measured habitat variables. When cross-scale correlations in such studies are strong, conclusions drawn about the relative strength of habitat associations at different spatial scales may be inaccurate. Here we adapt and demonstrate an analytical technique based on variance decomposition for quantifying the influence of cross-scale correlations on multiscale habitat associations. We used the technique to quantify the variation in nest-site locations of Red-naped Sapsuckers (Sphyrapicus nuchalis) and Northern Flickers (Colaptes auratus) associated with habitat descriptors at three spatial scales. We demonstrate how the method can be used to identify components of variation that are associated only with factors at a single spatial scale as well as shared components of variation that represent cross-scale correlations. Despite the fact that no explanatory variables in our models were highly correlated (r < 0.60), we found that shared components of variation reflecting cross-scale correlations accounted for roughly half of the deviance explained by the models. These results highlight the importance of both conducting habitat analyses at multiple spatial scales and of quantifying the effects of cross-scale correlations in such analyses. Given the limits of conventional analytical techniques, we recommend alternative methods, such as the variance-decomposition technique demonstrated here, for analyzing habitat associations at multiple spatial scales. ?? The Cooper Ornithological Society 2006.

Conference Paper↗

USGS2017

Attaching transmitters to waterbirds using one versus two subcutaneous anchors: Retention and survival trade-offs

A major challenge of wildlife telemetry is choosing an attachment technique that maximizes transmitter retention while minimizing negative side effects. For waterbirds, attachment of transmitters with subcutaneous anchors has been an effective and well-established technique, having been used on >40 species. This method was recently modified to include a second subcutaneous anchor, presumably increasing transmitter retention beyond that of single-anchor attachments. This putative benefit may be offset, however, by increased health risks related to additional incisions and subcutaneous protrusions. To test this potential trade-off, we attached radiotransmitters to molting and wintering surf ( Melanitta perspicillata ) and white-winged scoters ( M. fusca ) during 2008 and 2009 in Washington State and southeast Alaska, USA, using single- (121 scoters) and double-anchor (128 scoters) attachment techniques. We estimated daily probabilities of survival and radio retention for each group, this being apparent retention for wintering scoters because we could not differentiate shed transmitters from flighted emigration. For scoters during the flightless remigial molt, we found that addition of a second anchor increased cumulative retention probability (±SE) over a 49-day period from 0.69 ± 0.11 for single-anchor to 0.88 ± 0.07 for double-anchor attachments, while having no effect on survival. However, during winter, scoters with double-anchor attachments experienced no improvement in apparent retention, while having significantly lower survival during their first 14 days following transmitter attachment; of 15 mortalities during this period, 11 had 2 subcutaneous anchors. From day 15 onward, winter survival rates were nearly identical for single- versus double-anchor attachments, indicating that adverse effects of subcutaneous anchors were mainly limited to the 14-day postattachment period. Overall, given that the survival cost of adding a second subcutaneous anchor was substantial for wintering scoters—decreasing 14-day survival by 12% for adults and 23% for juveniles—we recommend that researchers opt for single-anchor attachments under most circumstances, especially during winter when birds may be energetically challenged.

Wildlife Society Bulletin↗

USGS2022

VIMTS: Variational-based Imputation for Multi-modal Time Series

Multi-modal time series data in real applications often contain data of different dimensionalities, e.g., high-dimensional modality such as image data series, and low-dimensional univariate time series. Multi-modal time series data with missing high-dimensional modal values are ubiquitous in real-world classification and regression applications. To accurately predict the target labels, it is important to appropriately impute the high-dimensional modal missing values. However, most existing imputation methods focus on multivariate time series, fail to simultaneously consider temporal dependencies within each series and the correlations across the series, and also lack a probabilistic interpretation. In this paper, we propose a novel method, which uses a new structured variational approximation technique for the imputation of missing values in multi-modal time series. Instead of directly imputing high-dimensional modal missing values, we use the variational approximation technique to impute intermediate lower-dimensional feature representations of high-dimensional modal missing values from simple modalities related to high-dimensional modality and then feed them into a dynamical model. The dynamical model captures the temporal dependencies of the feature representations and finally predicts the target labels. In order to address the optimization difficulties caused by the lack of ground truth values of lower-dimensional feature representations, we also propose a two-stage isolated optimization strategy for better convergence. We evaluate our method on a real-world stream monitoring dataset. Our extensive experiments demonstrate that the proposed method outperforms several state-of-the-art methods in both data imputation and prediction performance.

Conference Paper↗

USGS1993

Prediction of hydrocarbons in sedimentary basins

To estimate the undiscovered hydrocarbon potential of sedimentary basins, quantitative play assessments specific for each location in a region may be obtained using geostatistical methods combined with the theory of classification of geological objects, a methodology referred to as regionalization. The technique relies on process modeling and measured borehole data as well as probabilistic methods to exploit the relationship between geology (the "predictor") and known hydrocarbon productivity (the "target") to define prospective stratigraphic intervals within a basin. It is demonstrated in case studies from the oil-producing region of the western Kansas Pennsylvanian Shelf and the gas-bearing Rotliegend sediments of the Northeast German Basin. ?? 1993 International Association for Mathematical Geology.

Mathematical Geology↗

USGS2023

Advancing subsurface investigations beyond the borehole with passive seismic horizontal-to-vertical spectral ratio and electromagnetic geophysical methods at transportation infrastructure sites in New Hampshire

The U.S. Geological Survey (USGS), in cooperation with the New Hampshire Department of Transportation (NHDOT), surveyed transportation infrastructure sites using rapidly deployable geophysical methods to assess benefits added to a comprehensive site characterization with traditional geotechnical techniques. Horizontal-to-vertical spectral-ratio (HVSR) passive-seismic and electromagnetic-induction (EMI) methods were applied at 4 sites including a roadway-stream crossing, roadway-bridge rail-trail crossing, commuter-parking expansion, and a railroad-adjacent river-cutbank slope-failure site. Additionally, ground-penetrating-radar (GPR) was used at the slope-failure site. Typically, subsurface geotechnical properties are determined from boring data; however, borings are often spaced hundreds of feet apart, potentially missing important spatial variability between boreholes. Geotechnical site characterization including geophysical surveys helped provide a more accurate characterization by using continuous or near continuous profiling. Three-component ambient noise measured with HVSR methods were used to determine resonance frequency and estimate sediment thickness. The method works when there is a strong shear-wave acoustic impedance contrast (> 2:1) between sediment and bedrock. Sediment thickness estimates from HVSR measurements were combined with boring data to make detailed maps of the bedrock surface altitude. The bulk electrical conductivity of the subsurface was indirectly measured with EMI methods and was used to identify lithologic variations, shallow bedrock, and conductive groundwater. Ground penetrating radar, which transmits pulses of electromagnetic energy into the subsurface and records the amplitude and timing of reflected signals, was used to identify bedding and changes in lithology or water content. By combining geophysical and boring data analyses, transportation projects produced more spatially comprehensive representations of geotechnical subsurface conditions than would be determined using conventional borings alone.

New Hampshire↗

USGS2001

Statistics for wildlifers: how much and what kind?

Quantitative methods are playing increasingly important roles in wildlife ecology and, ultimately, management. This change poses a challenge for wildlife practitioners and students who are not well-educated in mathematics and statistics. Here we give our opinions on what wildlife biologists should know about statistics, while recognizing that not everyone is inclined mathematically. For those who are, we recommend that they take mathematics coursework at least through calculus and linear algebra. They should take statistics courses that are focused conceptually , stressing the Why rather than the How of doing statistics. For less mathematically oriented wildlifers, introductory classes in statistical techniques will furnish some useful background in basic methods but may provide little appreciation of when the methods are appropriate. These wildlifers will have to rely much more on advice from statisticians. Far more important than knowing how to analyze data is an understanding of how to obtain and recognize good data. Regardless of the statistical education they receive, all wildlife biologists should appreciate the importance of controls, replication, and randomization in studies they conduct. Understanding these concepts requires little mathematical sophistication, but is critical to advancing the science of wildlife ecology.

Wildlife Society Bulletin↗

USGS2024

Mapping the resistivity structure of Walker Ridge 313 in the Gulf of Mexico using the marine CSEM method

A marine controlled source electromagnetic (CSEM) campaign was carried out in the Gulf of Mexico to further develop marine electromagnetic techniques in order to aid the detection and mapping of gas hydrate deposits. Marine CSEM methods are used to obtain an electrical resistivity structure of the subsurface which can indicate the type of substance filling the pore space, such as gas hydrates which are more resistive. Results from the Walker Ridge 313 study (WR 313) are presented in this paper and compared with the Gulf of Mexico Gas Hydrate Joint Industry Project II (JIP2) logging while drilling (LWD) results and available seismic data. The hydrate, known to exist within sheeted sand deposits, is mapped as a resistive region in the two dimensional (2D) CSEM inversion models. This is consistent with the JIP2 LWD resistivity results. CSEM inversions that use seismic horizons provide more realistic results compared to the unconstrained inversions by providing sharp boundaries and architectural control on the location of the resistive and conductive regions in the CSEM model. The seismic horizons include: 1) the base of the gas hydrate stability zone (BGHSZ), 2) the top of salt, and 3) the top and bottom of a fine grained marine mud interval with near vertical hydrate filled fractures, to constrain the CSEM inversion model. The top of salt provides improved location for brines, water saturated salt, and resistive salt. Inversions of the CSEM data map the occurrence of a ‘halo’ of conductive brines above salt. The use of the BGHSZ as a constraint on the inversion helps distinguish between free gas and gas hydrate as well as gas hydrate and water saturated sediments.

Louisiana↗

USGS2015

Evaluation and comparison of methods to estimate irrigation withdrawal for the National Water Census Focus Area Study of the Apalachicola-Chattahoochee-Flint River Basin in southwestern Georgia

Methods to estimate irrigation withdrawal using nationally available datasets and techniques that are transferable to other agricultural regions were evaluated by the U.S. Geological Survey as part of the Apalachicola-Chattahoochee-Flint (ACF) River Basin focus area study of the National Water Census (ACF–FAS). These methods investigated the spatial, temporal, and quantitative distributions of water withdrawal for irrigation in the southwestern Georgia region of the ACF–FAS, filling a vital need to inform science-based decisions regarding resource management and conservation. The crop– demand method assumed that only enough water is pumped onto a crop to satisfy the deficit between evapotranspiration and precipitation. A second method applied a geostatistical regimen of variography and conditional simulation to monthly metered irrigation withdrawal to estimate irrigation withdrawal where data do not exist. A third method analyzed Landsat satellite imagery using an automated approach to generate monthly estimates of irrigated lands. These methods were evaluated independently and compared collectively with measured water withdrawal information available in the Georgia part of the ACF–FAS, principally in the Chattahoochee-Flint River Basin. An assessment of each method’s contribution to the National Water Census program was also made to identify transfer value of the methods to the national program and other water census studies. None of the three methods evaluated represent a turnkey process to estimate irrigation withdrawal on any spatial (local or regional) or temporal (monthly or annual) extent. Each method requires additional information on agricultural practices during the growing season to complete the withdrawal estimation process. Spatial and temporal limitations inherent in identifying irrigated acres during the growing season, and in designing spatially and temporally representative monitor (meter) networks, can belie the ability of the methods to produce accurate irrigation-withdrawal estimates that can be used to produce dependable and consistent assessments of water availability and use for the National Water Census. Emerging satellite-data products and techniques for data analysis can generate high spatial-resolution estimates of irrigated-acres distributions with near-term temporal frequencies compatible with the needs of the ACF–FAS and the National Water Census.

Georgia↗

USGS2007

A critical review of three methods used for the measurement of mercury (Hg2+)-dissolved organic matter stability constants

Three experimental techniques - ion exchange, liquid-liquid extraction with competitive ligand exchange, and solid-phase extraction with competitive ligand exchange (CLE-SPE) - were evaluated as methods for determining conditional stability constants (K) for the binding of mercury (Hg2+) to dissolved organic matter (DOM). To determine the utility of a given method to measure stability constants at environmentally relevant experimental conditions, experimental results should meet three criteria: (1) the data must be experimentally valid, in that they were acquired under conditions that meet all the requirements of the experimental method, (2) the Hg:DOM ratio should be determined and it should fall within levels that are consistent with environmental conditions, and (3) the stability constants must fall within the detection window of the method. The ion exchange method was found to be limited by its detection window, which constrains the method to stability constants with log K values less than about 14. The liquid-liquid extraction method was found to be complicated by the ability of Hg-DOM complexes to partition into the organic phase. The CLE-SPE method was found to be the most suitable of these methods for the measurement of Hg-DOM stability constants. Stability constants for DOM isolates measured using the CLE-SPE method at environmentally relevant Hg:DOM ratios were log K = 25-30 (M-1). These values are consistent with the strong Hg2+ binding expected for reduced S-containing binding sites.

Applied Geochemistry↗

USGS2025

3D Converted wave reverse time migration imaging

We describe a newly developed method for recovering high-resolution images of seismic discontinuities, such as subducting slabs, in 3D. Our method makes use of converted S → P or P → S waves observed by dense arrays of seismometers to infer the locations and relative strengths of seismic discontinuities at depth in a target region. Observed direct and converted waves are backpropagated to their times of origin. The time-reversed wavefield is then separated into its constituent P and S components via the Helmholtz decomposition, and those separated wavefields are used to compute imaging functions that characterize the locations and relative strengths of seismic discontinuities. Imaging functions may be designed to use either S → P or P → S waves, so that users can target those arrivals expected to be most dominant in a given dataset. We have previously demonstrated the efficacy of our method in two dimensions, and we now present a 3D implementation of our technique which addresses the significant computational challenges posed by the size of volumetric wavefield data in three dimensions. Through a series of synthetic examples, we demonstrate that our method is capable of recovering the fine scale structure of a subducting slab given realistic station coverage and earthquake sources. We investigate optimal seismic station geometries for our technique and explore image interpretability in regions with poor data coverage. We find that linear station geometries yield more optimal, interpretable imaging functions than collections of small arrays can. We also show that our method can successfully recover bothS → P or P → S images when realistic shear earthquake sources are used, and we explore the additional computational challenges presented by the high frequency content of S waves. Our results demonstrate the potential for our technique to recover high-resolution information about subducting slabs in real-world regions, given that relatively sparse seismic arrays with only approximately 100 stations are capable of recovering interpretable imaging functions from just a few realistic earthquake sources for multiple discontinuities at significant depth in an area of approximately 400~sq~km.

Seismica↗

USGS2005

Comparative soil CO2 flux measurements and geostatistical estimation methods on Masaya volcano, Nicaragua

We present a comparative study of soil CO 2 flux ( F C O 2 "> F C O 2 ) measured by five groups (Groups 1–5) at the IAVCEI-CCVG Eighth Workshop on Volcanic Gases on Masaya volcano, Nicaragua. Groups 1–5 measured F C O 2 using the accumulation chamber method at 5-m spacing within a 900 m 2 grid during a morning (AM) period. These measurements were repeated by Groups 1–3 during an afternoon (PM) period. Measured F C O 2 ranged from 218 to 14,719 g m −2 day −1 . The variability of the five measurements made at each grid point ranged from ±5 to 167%. However, the arithmetic means of fluxes measured over the entire grid and associated total CO 2 emission rate estimates varied between groups by only ±22%. All three groups that made PM measurements reported an 8–19% increase in total emissions over the AM results. Based on a comparison of measurements made during AM and PM times, we argue that this change is due in large part to natural temporal variability of gas flow, rather than to measurement error. In order to estimate the mean and associated CO 2 emission rate of one data set and to map the spatial F C O 2 distribution, we compared six geostatistical methods: arithmetic and minimum variance unbiased estimator means of uninterpolated data, and arithmetic means of data interpolated by the multiquadric radial basis function, ordinary kriging, multi-Gaussian kriging, and sequential Gaussian simulation methods. While the total CO 2 emission rates estimated using the different techniques only varied by ±4.4%, the F C O 2 maps showed important differences. We suggest that the sequential Gaussian simulation method yields the most realistic representation of the spatial distribution of F C O 2 , but a variety of geostatistical methods are appropriate to estimate the total CO 2 emission rate from a study area, which is a primary goal in volcano monitoring research.

Masaya↗

USGS2025

Sensitive environmental DNA methods for low-risk surveillance of at-risk bumble bees

Terrestrial environmental DNA (eDNA) techniques have been proposed as a means of sensitive, non-lethal pollinator monitoring. To date, however, no studies have provided evidence that eDNA methods can achieve detection densities on par with traditional pollinator surveys. Using a large-scale dataset of eDNA and corresponding net surveys, we show that eDNA methods enable sensitive, species-level characterization of whole bumble bee communities, including rare and critically endangered species such as the rusty pathed bumble bee (RPBB; Bombus affinis ). All species present in netting surveys were detected within eDNA surveys, apart from two rare species in the socially parasitic subgenus Psithyrus (cuckoo bumble bees). Further, for rare non-parasitic species, eDNA methods exhibited similar sensitivity relative to traditional netting. Relative to flower eDNA samples, sequenced field negative controls resulted in significantly lower rates of Bombus detection, and these detections were likely attributable to high rates of background eDNA on environmental surfaces. Lastly, we found that eDNA-based frequency of detection across replicate surveys was strongly associated with net-based measures of abundance across site visits. We conclude that the method is cost-effective and highly scalable for semi-quantitative characterization of at-risk bumble bee communities, providing a new approach for improving our understanding of species habitat associations.

BioRxiv↗

USGS2025

Short-term ecological effects of solar energy development depend on plant community, soil type, and disturbance intensity

Solar energy is rapidly growing to decarbonize the electrical grid. Maintaining ecosystem function with solar energy generation can be promoted through construction methods that minimize negative impacts on soils and vegetation. However, the disturbance created by less-impactful construction methods at utility-scale solar energy (USSE) facilities and the ecosystem responses remain relatively unknown. We monitored soils and vegetation before and after the USSE build-out to assess the short-term impacts of construction on soils and vegetation at the Gemini Solar Project in the Mojave Desert. The facility was constructed with methods intended to be less impactful than traditional techniques. Our goal was to answer three questions: (1) What are the short-term effects of construction on soils and vegetation? (2) Do construction effects vary by the initial plant community and soil type? and (3) Does disturbance intensity from construction affect soil and vegetation response? We found strong evidence that the construction of the Gemini facility increased bare soil and soil compaction, and decreased dark biocrust cover and soil stability in the short term. For every 1% increase in disturbance intensity, we found a 0.23% increase in bare soil cover and a 0.10% decrease in dark biocrust cover. Plant responses varied more than soil responses and depended on the initial plant community and soil type, with decreases in plant canopy cover highest in sandy soils dominated by creosote bush ( Larrea tridentata ) and white bursage ( Ambrosia dumosa ) shrubs. Synthesis and applications : Many impacts of USSE facility construction depend on the underlying vegetation and soils and the level of disturbance intensity. The use of less-impactful construction methods, including a combination of overland travel and drive-and-crush examined in our study, can ameliorate negative effects relative to traditional construction practices and provide a pathway to maintain ecosystem function.

Journal of Applied Ecology↗

USGS2025

Sensitive environmental DNA methods for low-risk surveillance of at-risk bumble bees

Terrestrial environmental DNA (eDNA) techniques have been proposed as a means of sensitive, non-lethal pollinator monitoring. To date, however, no studies have provided evidence that eDNA methods can achieve detection sensitivity on par with traditional pollinator surveys. Using a large-scale dataset of eDNA and corresponding net surveys, we show that eDNA methods enable sensitive, species-level characterisation of whole bumble bee communities, including rare and critically endangered species such as the rusty patched bumble bee (RPBB; Bombus affinis ). All species present in netting surveys were detected within eDNA surveys, apart from two rare species in the socially parasitic subgenus Psithyrus (cuckoo bumble bees). Further, for rare non-parasitic species, eDNA methods exhibited similar sensitivity relative to traditional netting. Compared with flower eDNA samples, sequenced leaf surface eDNA samples resulted in significantly lower rates of Bombus detection, and these detections were likely attributable to high rates of background eDNA on environmental surfaces, perhaps due to airborne eDNA or eDNA movement during rainfall events. Lastly, we found that eDNA-based frequency of detection across replicate surveys was strongly associated with net-based measures of abundance across site visits. We conclude that the COI-based metabarcoding method we present is cost-effective and highly scalable for quantitative characterisation of at-risk bumble bee communities, providing a new approach for improving our understanding of species habitat associations.

Central Appalachian Mountains↗

USGS2011

Pathogens and diseases of freshwater mussels in the United States: Studies on bacterial transmission and depuration

Unionid mussels are recognized as important contributors to healthy aquatic ecosystems, as well as bioindicators of environmental perturbations. Because they are sedentary, filter feeding animals and require hosts (i.e., fishes) to transform embryonic glochidia, mussels are susceptible to direct adverse environmental parameters, and indirect parameters that restrict the timely presence of the host(s). Their numbers have declined in recent decades to a point that this fauna is regarded as one of the most imperiled in North America. The most significant threat to populations of native unionids in recent years has been the introduction and spread of zebra mussels Dreissena polymorpha. Many federal and state agencies, and private interests are now engaged in mussel conservation efforts, including collecting selected imperiled species from impacted rivers and lakes and propagating them at refuges for future population augmentations. One essential consideration with mussel propagation and their intensive culture at refugia is the prevention of pathogen introductions and control of diseases. Currently, there are few reports of etiological agents causing diseases among freshwater mussels; however, because of increased observations of mussel die-offs in conjunction with transfers of live animals between natural waters and refugia, disease problems can be anticipated to emerge. This review summarizes research to develop bacterial isolation techniques, study pathogen transmission between fish and mussels, identify causes of seasonal mussel die-offs, and develop non-destructive methods for pathogen detection. These efforts were done to develop disease preventative techniques for use by resource managers to avoid potential large-scale disease problems in restoration and population augmentation efforts among imperiled populations.

Conference Paper↗