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Water resources and the urban environment, lower Charles River watershed, Massachusetts, 1630-2005

The Charles River, one of the Nation’s most historically significant rivers, flows through the center of the Boston metropolitan region in eastern Massachusetts. The lower Charles River, downstream of the original head of tide in Watertown, was originally a productive estuary and important source of fish and shellfish for the Native Americans of the region. This portion of the river has an exceptionally long and colorful human history. In 1615, the explorer Captain John Smith gave the river its modern name, in honor of young Prince Charles of England. In 1617–18, the Native American community of the watershed was decimated by an epidemic, after having continuously occupied the area for the previous 4,000 years. In 1630, the first large group of English settlers, led by John Winthrop, set foot on the Shawmut Peninsula at the mouth of the river, and established the town of Boston. In the 1630s, the first printing press, public park, public school, and college in the English colonies were all established on the banks of the Charles River. Almost immediately, the settlers of Boston and adjacent towns also began to modify the landscape and water resources of the watershed. Perhaps the most important type of landscape alteration in the watershed was the filling of the extensive salt marshes and tidal flats of the estuary downstream of Watertown. This landmaking activity along the lower Charles River began in the mid-1600s, and did not conclude until the 1950s. In the early 20th century, the estuary mouth was dammed, creating a freshwater basin in the lower 9.5 miles of the river. A system of parks and parkways was built along the banks of the impounded river. In addition to the mainstem river, virtually all of the remaining water resources in the watershed have also been altered. Most of the river’s tributaries, for example, were culverted, or placed into tunnels, and many of the ponds and freshwater wetlands in the watershed were filled to facilitate urban development. One additional legacy of the river’s long human history is pollution from industry and sewage. By 1875, a total of 43 mills were operating along the lower Charles River between Watertown Dam and Boston Harbor. Thousands of gallons of untreated sewage and industrial wastewater entered the river daily through gravity drains, posing a major threat to public health. Concerted efforts to address the sewage problem began in the late 1870s. By the 1960s, the water quality of the river was significantly improved, yet still not suitable for swimming, fishing, or even boating under most conditions. In 1965, the Charles River Watershed Association was organized and the call to restore the environmental quality of the river and its parklands was heard anew. Passage of the Federal Clean Water Act in 1972 and the subsequent court-ordered reconstruction of the region’s sewage-treatment infrastructure in the 1980s and 1990s (the “Boston Harbor Cleanup”) provided additional impetus to address the river’s remaining pollution problems. In 1995, the U.S. Environmental Protection Agency launched the Clean Charles 2005 Initiative, which brought together government agencies, private-sector institutions, and environmental organizations to focus on restoring the river to fishable and swimmable conditions by Earth Day 2005. This initiative has achieved substantial improvements in water quality; sewage discharges to the river, for example, have been largely eliminated. Nevertheless, it is now widely acknowledged that full attainment of water-quality standards will likely depend upon improved public understanding of the watershed, continued efforts to eliminate illicit sewage discharges to the river, and better management of the urban runoff that enters the river both directly and from its many tributary streams.

Massachusetts↗

Use of stable isotopes of carbon, nitrogen, and sulfer to identify sources of nitrogen in surface waters in the Lower Susquehanna River basin, Pennsylvania

Stable isotopes of carbon (C), nitrogen (N), and sulfur (S) in nitrogen sources and nearby samples of topsoil, subsoil, runoff water, and stream water were measured to evaluate the feasibility of using isotopic data to identify nitrogen sources in stream water from forested, agricultural, or suburban land-use areas. Chemical and isotopic compositions were measured for six N-source types consisting of rain water, forest-leaf litter, synthetic fertilizer, farm-animal manure, municipal-sewage effluent and sludge, and septic-tank effluent and sludge. Compositions of topsoil, subsoil, runoff water, and stream water were measured to evaluate changes in compositions of transported N-containing materials near the N source. Animal manure, human waste (sewage plus septic), and forest-leaf litter can be distinguished on the basis of C; however, most N-sources can not be distinguished on the basis of N and S, owing to wide ranges of compositions and overlap among different N-source types. Although values of N for soil and runoff-water samples are qualitatively similar to those of the applied N source, values of C and S for runoff-water and stream-water samples appear to reflect the compositions of relatively large reservoirs of the elements in soil organic matter and minerals, respectively, and not the composition of the applied N source. Because of incomplete chemical transfor- mations, the ratio of organic carbon to total nitrogen for particulates in runoff or stream waters generally is lower than that for associated, nearby soils, and isotopic compositions commonly differ between particulate and dissolved fractions in the water.

Open-File Report↗

Geohydrology and water quality of the Calumet aquifer, in the vicinity of the Grand Calumet River/Indiana Harbor Canal, northwestern Indiana

The water-table configuration of the Calumet aquifer in the vicinity of the Grand Calumet River/Indiana Harbor Canal in Lake County, northwestern Indiana, reflects the complexity of the shallow ground-water-flow system. Large depressions in the water table in sewered areas interrupt broad ground-water divides between rivers. The aquifer/stream interactions along the Grand Calumet River/ Indiana Harbor Canal are directly related to Lake Michigan water levels because of a direct connection of the Grand Calumet River/Indiana Harbor Canal to the lake. Fluctuations in lake levels and evapotranspiration result in reversals in ground-water flow near the river and canal that last from several hours to several months. Most of the water from the Calumet aquifer discharges into sewers, the Grand Calumet River/Indiana Harbor Canal, Lake Michigan, and Silurian carbonate bedrock. Model simulations of ground-water flow for the study area indicate that the Calumet aquifer discharges about 15 ft 3 /s (cubic feet per second) of ground water to sewers, about 10 ft 3 /s to the Grand Calumet River/Indiana Harbor Canal, and about 4 ft 3 /s to Lake Michigan along a 25-mile section of shoreline. Estimates of groundwater flow from the Calumet aquifer to the bedrock range from 0 to 10 ft 3 /s. Results of analyses of water samples collected from wells in five land-use types steel industry, petrochemical industry, commercial and light industry, residential, and parks were compared. The highest median concentrations of inorganic ions and the most detections of organic compounds generally occurred in water samples from wells on the steel and petrochemical land-use areas. Water samples collected from wells on the commercial and light industrial land-use areas generally had lower median chemical concentrations than the samples from the steel and petrochemical land-use areas and greater median concentrations than the samples from the residential and park land-use areas. Seven of 52 acid-extractable and base/neutralextractable organic compounds and 17 of 36 volatile organic compounds analyzed were detected in a total of 35 wells. Only 4 of the 88 organic analytes phenols, bis(2-ethylhexyl)phthalate, benzene, and toluene were detected in more than 5 of the 35 wells. A comparison of primarily inorganic-constituent data from the five land-use groups to inorganic-constituent data from sites known to be contaminated shows that constituent concentrations in ground waters from wells in the land-use areas generally are lower than those in ground water from contaminated areas. Abstract 1 Likewise, a comparison of inorganic-constituent data from the land-use groups to inorganic-constituent data from areas relatively unaffected by human presence shows that constituent concentrations in ground water from wells in the land-use areas generally are greater than those in ground water from the unaffected areas. Some documented but unaccounted for chemical loads in the Grand Calumet River are from ground water. Ground water probably contributes more than 10 percent of the total chemical load of ammonia, chromium, and cyanide to the Grand Calumet River. In comparison, about 1 to 3 percent of the total streamflow in the Grand Calumet River is from ground water. Of the four major groundwater sinks in the aquifer, the east branch of the Grand Calumet River and the Indiana Harbor Canal generally receive the greatest chemical loads from ground water, whereas Lake Michigan generally receives the smallest loads.

Indiana↗

Translational science education through citizen science

Guided by the six elements of Translational Ecology (TE; i.e., decision-framing, collaboration, engagement, commitment, process, and communication), we showcase the first explicit example of a Translational Science Education (TSE) effort in the coastal redwood ecosystem of Humboldt County, CA. Using iNaturalist, a flexible and free citizen science/crowdsourcing app, we worked with students from grade school through college, and their teachers and community, to generate species lists for comparison among 19 school and non-profit locations spanning a range of urbanization. Importantly, this TSE effort resulted in both learning and data generation, highlighting the ability of a TSE framework to connect and benefit both students and researchers. Our data showed that, regardless of the age of the observers, holding organized BioBlitzes added substantially more species to local biodiversity lists than would have been generated without them. In support of current ecological theory, these data showed an urbanization gradient among sites, with rural sites containing fewer non-native species than urban ones. On the education side, qualitative assessments revealed students and educators remained engaged throughout the project. Future projects would also benefit by establishing quantifiable metrics for assessing student learning from project conception. Throughout the project, the fundamentals of TE were followed with repeated interactions and shared objectives developed over time within trusted community relationships. Such positive human interactions can lead new naturalists to think of themselves as champions of their local biodiversity (i.e., as land stewards). We anticipate that such newly empowered and locally expert naturalists will remain committed to land stewardship in perpetuity and that other scientists and educators are inspired to conduct similar work.

California↗

Sources of fecal indicator bacteria to groundwater, Malibu Lagoon and the near-shore ocean, Malibu, California, USA

Onsite wastewater treatment systems (OWTS) used to treat residential and commercial sewage near Malibu, California have been implicated as a possible source of fecal indicator bacteria (FIB) to Malibu Lagoon and the near-shore ocean. For this to occur, treated wastewater must first move through groundwater before discharging to the Lagoon or ocean. In July 2009 and April 2010, δ 18 O and δD data showed that some samples from water-table wells contained as much as 70% wastewater; at that time FIB concentrations in those samples were generally less than the detection limit of 1 Most Probable Number (MPN) per 100 milliliters (mL). In contrast, Malibu Lagoon had total coliform, Escherichia coli , and enterococci concentrations as high as 650,000, 130,000, and 5,500 MPN per 100 mL, respectively, and as many as 12% of samples from nearby ocean beaches exceeded the U.S. Environmental Protection Agency single sample enterococci standard for marine recreational water of 104 MPN per 100 mL. Human-associated Bacteroidales , an indicator of human-fecal contamination, were not detected in water from wells, Malibu Lagoon, or the near-shore ocean. Similarly, microarray (PhyloChip) data show Bacteroidales and Fimicutes Operational Taxanomic Units (OTUs) present in OWTS were largely absent in groundwater; in contrast, 50% of Bacteroidales and Fimicutes OTUs present in the near-shore ocean were also present in gull feces. Terminal-Restriction Length Fragment Polymorphism (T-RFLP) and phospholipid fatty acid (PLFA) data showed that microbial communities in groundwater were different and less abundant than communities in OWTS, Malibu Lagoon, or the near-shore ocean. However, organic compounds indicative of wastewater (such as fecal sterols, bisphenol-A and cosmetics) were present in groundwater having a high percentage of wastewater and were present in groundwater discharging to the ocean. FIB in the near-shore ocean varied with tides, ocean swells, and waves. Movement of water from Malibu Lagoon through the sand berm at the mouth of the Lagoon contributed FIB to the adjacent beach at low tide. Similar increases in FIB concentrations did not occur at beaches adjacent to unsewered residential development, although wastewater indicator compounds and radon-222 (indicative of groundwater discharge) were present. High FIB concentrations at high tide were not related to groundwater discharge, but may be related to FIB associated with debris accumulated along the high-tide line.

California↗

Phenotypic plasticity and climate change: Can polar bears respond to longer Arctic summers with an adaptive fast?

Plasticity in the physiological and behavioural responses of animals to prolonged food shortages may determine the persistence of species under climate warming. This is particularly applicable for species that can “adaptively fast” by conserving protein to protect organ function while catabolizing endogenous tissues. Some Ursids, including polar bears ( Ursus maritimus ), adaptively fast during winter hibernation—and it has been suggested that polar bears also employ this strategy during summer. We captured 57 adult female polar bears in the Southern Beaufort Sea (SBS) during summer 2008 and 2009 and measured blood variables that indicate feeding, regular fasting, and adaptive fasting. We also assessed tissue δ13C and δ15N to infer diet, and body condition via mass and length. We found that bears on shore maintained lipid and protein stores by scavenging on bowhead whale ( Balaena mysticetus ) carcasses from human harvest, while those that followed the retreating sea ice beyond the continental shelf were food deprived. They had low ratios of blood urea to creatinine (U:C), normally associated with adaptive fasting. However, they also exhibited low albumin and glucose (indicative of protein loss) and elevated alanine aminotransferase and ghrelin (which fall during adaptive fasting). Thus, the ~ 70% of the SBS subpopulation that spends summer on the ice experiences more of a regular, rather than adaptive, fast. This fast will lengthen as summer ice declines. The resulting protein loss prior to winter could be a mechanism driving the reported correlation between summer ice and polar bear reproduction and survival in the SBS.

Oecologia↗

Quality of water in Pascagoula and Escatawpa Rivers, Jackson County, Mississippi

The chemical and physical properties and the range of concentrations of most constituents in water in the Pascagoula and Escatawpa Rivers during the period May 17-19, 1977, varied rapidly between high and low tides, primarily as the result of interactions of freshwater inflow with highly mineralized Gulf waters. The water at a downstream site of the 11-mile study reach on the Pascagoula River was saline. On May 19, 1977, the dissolved-solids concentration at that site was 14,500 milligrams per liter. At the same time, the water at the mouth of Escatawpa River had a dissolved-solids concentration of 4,600 milligrams per liter. The specific conductance of the water at the downstream sites of both rivers increased with depth and progressively decreased upstream to sites where freshwater inflow was predominant. The specific conductance decreased upstream from a maximum of 40,000 micromhos per centimeter at 25°Celsius at site P1 to 60 micromhos at site P12 on Pascagoula River and from 30,000 micromhos at site E1 to 45 micromhos at site E9 on Escatawpa River. There was evidence of oxygen deficiency (less than 3.0 milligrams per liter) at many sites in deep pools where there is little circulation and mixing of the more dense saltwater. Dissolved-oxygen concentrations ranged from 2.1 to 8.2 milligrams per liter. Biochemical oxygen demand ranged from 0.1 to 3.5 milligrams per liter and was generally less than 2.0 milligrams per liter at most sites. A large part of the total organic carbon in the lower Pascagoula River was carried into the study area by freshwater inflow. Very little organic carbon was being discharged by the Escatawpa River into the Pascagoula River. Total nitrogen moved out of Pascagoula and Escatawpa Rivers at an extremely slow rate and in concentrations of less than 0.1 milligram per liter. The water temperature near the surface at downstream sites on Escatawpa River at low tide was elevated as much as 2.5°C (4.5°F), suggesting thermal loading. The fecal coliform and fecal streptococcal bacteria in Pascagoula and Escatawpa Rivers were in concentrations indicative of manmade pollution. The ratio of the concentrations in which these bacteria were present suggests that both rivers receive human enteric wastes.

Mississippi↗

Theme section on “Mesophotic coral ecosystems: Characterization, ecology, and management”

Mesophotic coral ecosystems (MCEs) are characterized by the presence of light-dependent corals and associated communities that are typically found at depths ranging from 30 to 40 m and extending to over 150 m in tropical and subtropical regions. The dominant communities providing structural habitat in the mesophotic zone can be comprised of coral, sponge, and algal species. Because working in this depth range is constrained by traditional SCUBA limits, less is known about corals and associated organisms there compared to shallower coral communities. Following the first-ever gathering of international scientists to review and discuss existing knowledge of MCEs, this issue focuses on the ecological characterization, geomorphology, and concept of MCEs as refugia for shallow-water populations. The review and research papers comprising this special issue reflect the current scientific understanding of these ecosystems and the underlying mechanisms that regulate them, as well as potential resource management implications. It is important to understand the value and role of mesophotic coral ecosystems in tropical and subtropical regions as these areas face increasing environmental change and human impacts

Coral Reefs↗

High-resolution remote sensing of water quality in the San Francisco Bay-Delta Estuary

The San Francisco Bay–Delta Estuary watershed is a major source of freshwater for California and a profoundly human-impacted environment. The water quality monitoring that is critical to the management of this important water resource and ecosystem relies primarily on a system of fixed water-quality monitoring stations, but the limited spatial coverage often hinders understanding. Here, we show how the latest technology in visible/near-infrared imaging spectroscopy can facilitate water quality monitoring in this highly dynamic and heterogeneous system by enabling simultaneous depictions of several water quality indicators at very high spatial resolution. The airborne portable remote imaging spectrometer (PRISM) was used to derive high-spatial-resolution (2.6 × 2.6 m) distributions of turbidity, and dissolved organic carbon (DOC) and chlorophyll-a concentrations in a wetland-influenced region of this estuary. A filter-passing methylmercury vs DOC relationship was also developed using in situ samples and enabled the high-spatial-resolution depiction of surface methylmercury concentrations in this area. The results illustrate how high-resolution imaging spectroscopy can inform management and policy development in important inland and estuarine water bodies by facilitating the detection of point- and nonpoint-source pollution, and by providing data to help assess the complex impacts of wetland restoration and climate change on water quality and ecosystem productivity.

California↗

Status and understanding of groundwater quality in the northern San Joaquin Basin, 2005: California GAMA Priority Basin Project

Groundwater quality in the 2,079 square mile Northern San Joaquin Basin (Northern San Joaquin) study unit was investigated from December 2004 through February 2005 as part of the Priority Basin Project of the Groundwater Ambient Monitoring and Assessment (GAMA) Program. The GAMA Priority Basin Project was developed in response to the Groundwater Quality Monitoring Act of 2001 that was passed by the State of California and is being conducted by the California State Water Resources Control Board in collaboration with the U.S. Geological Survey and the Lawrence Livermore National Laboratory. The Northern San Joaquin study unit was the third study unit to be designed and sampled as part of the Priority Basin Project. Results of the study provide a spatially unbiased assessment of the quality of raw (untreated) groundwater, as well as a statistically consistent basis for comparing water quality throughout California. Samples were collected from 61 wells in parts of Alameda, Amador, Calaveras, Contra Costa, San Joaquin, and Stanislaus Counties; 51 of the wells were selected using a spatially distributed, randomized grid-based approach to provide statistical representation of the study area (grid wells), and 10 of the wells were sampled to increase spatial density and provide additional information for the evaluation of water chemistry in the study unit (understanding/flowpath wells). The primary aquifer systems (hereinafter, primary aquifers) assessed in this study are defined by the depth intervals of the wells in the California Department of Public Health database for each study unit. The quality of groundwater in shallow or deep water-bearing zones may differ from quality of groundwater in the primary aquifers; shallow groundwater may be more vulnerable to contamination from the surface. Two types of assessments were made: (1) status, assessment of the current quality of the groundwater resource; and (2) understanding, identification of the natural and human factors affecting groundwater quality. Relative-concentrations (sample concentrations divided by benchmark concentrations) were used for evaluating groundwater quality for those constituents that have Federal or California regulatory or non-regulatory benchmarks for drinking-water quality. Benchmarks used in this study were either health-based (regulatory and non-regulatory) or aesthetic based (non-regulatory). For inorganic constituents, relative-concentrations were classified as high (equal to or greater than 1.0), indicating relative-concentrations greater than benchmarks; moderate (equal to or greater than 0.5, and less than 1.0); or, low (less than 0.5). For organic and special- interest constituents [1,2,3-trichloropropane (1,2,3-TCP), N-nitrosodimethylamine (NDMA), and perchlorate], relative- concentrations were classified as high (equal to or greater than 1.0); moderate (equal to or greater than 0.1 and less than 1.0); or, low (less than 0.1). Aquifer-scale proportion was used as the primary metric in the status assessment for groundwater quality. High aquifer- scale proportion is defined as the percentage of the primary aquifer with relative-concentrations greater than 1.0; moderate and low aquifer-scale proportions are defined as the percentage of the primary aquifer with moderate and low relative- concentrations, respectively. The methods used to calculate aquifer-scale proportions are based on an equal-area grid; thus, the proportions are areal rather than volumetric. Two statistical approaches - grid-based, which used one value per grid cell, and spatially weighted, which used the full dataset - were used to calculate aquifer-scale proportions for individual constituents and classes of constituents. The spatially weighted estimates of high aquifer-scale proportions were within the 90-percent confidence intervals of the grid-based estimates in all cases. The understanding assessment used statistical correlations between constituent relative-concentrations and

California↗

Fish and Aquatic Invertebrate Communities in Waterways, and Contaminants in Fish, at the Barataria Preserve of Jean Lafitte National Historical Park and Preserve, Louisiana, 1999-2000

Fish and aquatic invertebrate communities in waterways of the Barataria Preserve of Jean Lafitte National Historical Park and Preserve, Louisiana, were surveyed from 1999 to 2000. An inventory of fish in the Barataria Preserve was established, and concentrations of selected organochlorine pesticides, polychlorinated biphenyls, and trace elements; iron; and manganese in fish tissue for selected species were determined. The fish and aquatic invertebrate sampling completed for this study indicated that abundant and diverse communities are present in the Barataria Preserve. Thirty-two species of fish were identified in the Barataria Preserve during this survey. The total number of species identified in a single sampling ranged from 20 to 26. Most of the fish sampled are designated as intermediate in their tolerance to poor water quality. Three species of fish designated as tolerant (common carp, Cyprinus carpio; golden shiner, Notemigonus crysoleucas; and yellow bullhead, Ameiurus natalis), and one as intolerant (lake chubsucker, Erymizon sucetta), were identified. In November 1999, the average total weight of all fish collected by boat-mounted electroshocker from a single site was about 35,000 grams; in May and July 1999, the average total weight was between 9,000 and 10,000 grams. The contribution of spotted gar (Lepisosteus oculatus) to the total weight of the fish averaged between 38 and 41 percent among the three sample periods. Members of the sunfish family (Centrarchidae) contributed between 18 and 28 percent of the total weight. For each sampling period, 60 to 83 percent of the total weight from the sunfish family was contributed by bluegill (Lepomis macrochirus) and largemouth bass (Micropterus salmoides). Aquatic invertebrates were sampled at three sites. Most aquatic invertebrates identified were freshwater species, but some were brackish-water and marine species. About 234,000 organisms were identified and enumerated from the richest-targeted habitat (RTH, floating rafts of aquatic plants). Individuals from 84 genera belonging to 51 families were identified. Diptera (true flies) was the most diverse group. Malacostraca (crustaceans), especially Amphipoda (scuds and sideswimmers), were the most abundant (36 percent). Total abundance and taxa richness of aquatic invertebrates were comparable during the March and July sampling in 1999, but were lower in samples collected from the same habitat at all three sites in April 2000. About 106 individuals were identified and enumerated from the depositional-targeted habitat (DTH, bottom material). Individuals from 7 genera belonging to 9 families were identified. Diptera was the most diverse group, and Annelida, especially tubificid worms, were the most abundant organisms identified (52 percent). Total abundance and composition of aquatic invertebrate communities differed between RTH and DTH at all three sites in April 2000. Organic compounds in whole fish, and trace elements, iron, and manganese in fillets, were analyzed in bowfin (Amia calva), bluegill (Lepomis macrochirus), largemouth bass (Micropterus salmoides), and common carp (Cyprinus carpio). Organic compounds were not detected. Mercury was detected in fillets of all four species. Highest concentrations of mercury were detected in fillets from bowfin and largemouth bass. Mercury concentrations increased with increasing weight in the three predatory fish species (bowfin, bluegill, and largemouth bass), but were much lower, relative to weight, in the omnivore, common carp. Chromium concentrations were detected in tissue of the two larger fish, bowfin and common carp. Cadmium and lead were not detected in any samples. Mercury concentrations for larger predatory fish caught in Preserve waterways may be a concern if the fish are frequently consumed by humans. The process of mercury accumulation appears to be natural, and not related to a local source problem. Mercury concentrations in comparable fish tissue at

Scientific Investigations Report↗

Geographic drivers of mercury entry into aquatic food webs revealed by mercury stable isotopes in dragonfly larvae

Atmospheric mercury (Hg) emissions and subsequent transport and deposition are major concerns within protected lands, including national parks, where Hg can bioaccumulate to levels detrimental to human and wildlife health. Despite this risk to biological resources, there is limited understanding of the relative importance of different Hg sources and delivery pathways within protected regions. Here, we used Hg stable isotope measurements of a single aquatic bioindicator, dragonfly larvae, to determine if these tracers can resolve spatial patterns in Hg sources, delivery mechanisms, and aquatic cycling at a national scale. Mercury isotope values in dragonfly tissues varied among habitat types (e.g., lentic, lotic, wetland) and geographic location. Photochemical-derived isotope fractionation was habitat-dependent and influenced by factors that impact light penetration directly or indirectly, including dissolved organic matter, canopy cover, and total phosphorus. Strong patterns for Δ 200 Hg emerged in the western US, highlighting the relative importance of wet deposition sources in arid regions in contrast to dry deposition delivery in forested regions. This work highlights the efficacy of dragonfly larvae as biosentinels for Hg isotope studies due to their ubiquity across freshwater ecosystems and ability to track variation in Hg sources and processing attributed to small-scale habitat and large-scale regional patterns.

Environmental Science and Technology↗

Descriptions and preliminary report on sediment cores from the southwest coastal area, Everglades National Park, Florida

Sediment cores were collected from five locations in the southwest coastal area of Everglades National Park, Florida, in May 2004 for the purpose of determining the ecosystem history of the area and the impacts of changes in flow through the Shark River Slough. An understanding of natural cycles of change prior to significant human disturbance allows land managers to set realistic performance measures and targets for salinity and other water quality and quantity quality measures. Preliminary examination of the cores indicates significant changes have taken place over the last 1000-2000 years. The cores collected from the inner bays — the most landward bays — are distinctly different from other estuarine sediment cores examined in Florida Bay and Biscayne Bay. Peats in the inner-bay cores from Big Lostmans Bay, Broad River Bay, and Tarpon Bay were deposited at least 1000 years before present (BP) based on radiocarbon analyses. The peats are overlain by poorly sorted organic muds and sands containing species indicative of deposition in a freshwater to very low salinity environment. The Alligator Bay core, the most northern inner-bay core, is almost entirely sand; no detailed faunal analyses or radiometric dating has been completed on this core. The Roberts River core, taken from the mouth of the River where it empties into Whitewater Bay, is lithologically and faunally similar to previously examined cores from Biscayne and Florida Bays; however, the basal unit was deposited ~2000 years before the present based on radiocarbon analyses. A definite trend of increasing salinity over time is seen in the Roberts River core, from sediments representing a terrestrially dominated freshwater environment at the bottom of the core to those representing an estuarine environment with a strong freshwater influence at the top. The changes seen at Roberts River could represent a combination of factors including rising sea-level and changes in freshwater supply, but the timing and extent of the changes needs to be determined. The preliminary information on the cores collected in 2004 will be combined with data from cores collected in July 2005. The 2005 cores were collected along transects moving from the inner bays out towards the coast. These transects, combining information from the 2004 and 2005 cores, will allow us to examine long term trends in freshwater supply, sea-level rise, and potentially the impact of storms on the coastal ecosystem.

Florida↗

Updates to the Madison Lake (Minnesota) CE–QUAL–W2 water-quality model for assessing algal community dynamics

A previously developed CE–QUAL–W2 model for Madison Lake, Minnesota, simulated the algal community dynamics, water quality, and fish habitat suitability of Madison Lake under recent (2014) meteorological conditions. Additionally, this previously developed model simulated the complex interplay between external nutrient loading, internal nutrient loading from sediment release of phosphorus, and the organic matter decomposition of the algal biomass. However, the partitioning of Cyanophyta within the modeling framework was simplified to one group and did not account for how different Cyanophyta populations are affected by light conditions, use of nitrogen, temperature growth ranges, and differences in settling rates. Properly capturing Cyanophyta dynamics is important given the potential risks posed by potential large algal blooms. For example, when Cyanophyta form large blooms, recreational activities can become restricted in certain areas because of thick algal scums or algal mats, in addition to the possible production of a class of toxins, known as cyanotoxins, capable of threatening human health, domestic animals, and wildlife. Therefore, we updated the model to partition the Cyanophyta into a group that fixed nitrogen and a second, more buoyant Cyanophyta group that did not independently fix nitrogen. The U.S. Geological Survey, in cooperation with the St. Croix Watershed Research Station (Science Museum of Minnesota) with support from the Environmental and Natural Resources Trust Fund of Minnesota (Legislative-Citizen Commission on Minnesota Resources), updated the Madison Lake CE–QUAL–W2 model to address the shortcomings of simulating Cyanophyta in the previously developed model and better characterize Cyanophyta into two groups. In addition to updating the Cyanophyta group differentiation, the part of the model that handles the simulation of algal community dynamics was updated while preserving model predictive capabilities for nutrients, water temperature, and dissolved oxygen. The calibration and validation of the model was done under recent meteorological conditions with large and persistent Cyanophyta blooms (2014 and 2016). Overall, the model simulations predicted the persistently large total phosphorus concentrations in the hypolimnion of Madison Lake and key differences in nutrient concentrations between 2014 and 2016. The Cyanophyta bloom persistence throughout the summer was also simulated by the model in 2014 and 2016, a critical goal of the model update. Finally, monthly total phosphorus budgets were calculated for the updated Madison Lake model for 2014 and 2016.

Minnesota↗

U.S. Geological Survey Activities Related to American Indians and Alaska Natives Fiscal Year 2001

Information is a resource that can help Native American governments and their people. The U.S. Geological Survey (USGS) makes available technical expertise, reports, and other impartial information sources that can benefit Native Americans interested in subsistence issues, water, land use, and the health of many parts of the environment. The USGS works in cooperation with American Indian and Alaska Native governments, conducting research on water and mineral resources, animals and plants of environmental, economic, or subsistence importance, natural hazards, and geologic resources. Digital data on cartography, mineral resources, stream flow, biota, and other topics are available to American Indian and Alaska Native individuals and institutions. The USGS recognizes the need to learn from and share knowledge with Native peoples. This report describes most of the activities that the USGS conducted with American Indian and Alaska Native governments, educational institutions, and individuals during Federal fiscal year 2001. Some of these USGS activities were carried out in concert with the Bureau of Indian Affairs (BIA). Others were conducted by Tribes and the USGS. In 2001, the USGS began examining its activities related to American Indians and Alaska Natives to determine how it can better serve these customers within its mandates. A growing number of Tribal governments, educational institutions, and other Tribal organizations have begun using geographic information systems and other digital technologies in recent years. As Tribes become more interested in and more adept at managing digital information, they are seeking relevant data from the USGS more frequently. Using digital technologies provides Tribal governments with additional means of managing lands and resources for the benefit of current and future generations. The USGS recognizes the need to make its information available to Tribal governments, and to work with those governments and other institutions to advance data management capabilities. The USGS is responding to this need by increasing the transfer of scientific information to American Indian and Alaska Native governments and by training employees of those governments to conduct and improve scientific studies. The USGS is also encouraging American Indians and Alaska Natives to pursue careers in science, and seeking ways to hire Indian and Native students. By identifying, improving, and disseminating information about available hiring mechanisms, the USGS is working to make hiring such students easier, and therefore more likely, for USGS managers. The U.S. Geological Survey is the Federal science bureau within the Department of the Interior (DoI). The USGS is non-regulatory and is not a significant manager of Federal or Trust lands or assets. However, there are two types of USGS activities that do involve American Indians, Alaska Natives, and their lands. The first type of activity is the course of formal studies, conducted through existing USGS programs, that involves collection of specific types of data as well as investigative and research projects. These projects typically last 2 or 3 years, although a few are parts of longer-term activities. Some projects are funded through cooperative agreements, from monies provided to the USGS by individual Tribal governments or by the BIA. The USGS provides matching funds for cooperative projects. These formal projects may also receive funding from the U.S. Environmental Protection Agency, the Indian Health Service (part of the Department of Health and Human Services), or other Federal agencies. The USGS routinely works with its sister bureaus in the Department of the Interior to provide the scientific information and expertise needed to meet the Department's science priorities. Within this context, the USGS and the BIA are cooperating to use USGS information resources to benefit American Indian and Alaska Native peoples and their lands. The second type of USGS activity is less formal, based on initiatives designed and conducted by USGS employees. Frequently involving educational activities, these endeavors are prompted by employee interests, often as collateral issues, that result from one or more USGS employees identifying and responding to an observed need. In these activities, USGS employees help fulfill a mission of the USGS-to make science relevant-while helping their fellow citizens. USGS employees have also taken the initiative in assisting American Indians and Alaska Natives through participation in several organizations that were created to foster awareness of science among Native peoples and to help build support and communication networks. One such group is the American Indian Science and Engineering Society (AISES). This group sponsors an annual national meeting in which USGS employees participate. USGS employees join this organization on a voluntary basis, bringing the benefits of this expanded network to the USGS, as many employees do with other professional organizations. Each part of the USGS has identified an American Indian/Alaska Native liaison. Furthermore, the USGS has instituted a regional organizational structure, with Western, Central, and Eastern Regions. The regions work in concert with specific scientific disciplines to conduct the scientific mission of the USGS. The regional structure is intended to bring us closer to our customers; we hope that Native Americans and Alaska Natives will use the contacts listed at the end of this report.

Report↗

Morphological, elemental, and boron isotopic insights into pathophysiology of diseased coral growth anomalies

Growth anomalies (GAs) impact both coral skeleton and soft tissues and are detrimental to reef health. This tumor-like disease is increasingly found throughout the tropics and is commonly associated with high human population density, yet little is known about the etiology, pathology, or calcification behavior of the disease. Here, we investigate potential mechanisms involved in the development of GAs through chemical and morphological characterization of GA skeletons in Porites compressa from a site of high disease prevalence (Coconut Island, Hawaii). A comprehensive suite of trace elements and boron isotopes (δ11B) were measured in skeletal GAs to assess calcification behavior and uptake of essential and toxic metals. Scanning electron microscopy of GA skeleton revealed it to be highly porous consisting of a matrix with a disorganized crystal structure, in contrast to the dense well-organized normal skeleton of P. compressa. Elemental analyses revealed decreased Mg/Ca and increased U/Ca in GA skeletons relative to paired unaffected samples, suggesting a decreased abundance of rapidly accreting microstructures “centers of calcification” in the GAs. Estimates of carbonate system parameters based on δ11B and B/Ca measurements indicate reduced pH (–0.05 units) and [CO32–] within the calcifying fluid of GAs, which may have implications for GA calcification. Higher levels of essential (V/Ca and Mo/Ca) elements in GAs potentially indicate increased abundance of holobiont-associated, nitrogen-fixing bacteria and higher Sb/Ca and Nd/Ca indicate alteration in the accumulation/depuration of these toxic metals. In aggregate, our findings show that dystrophic calcification processes could explain structural differences seen in GA vs unaffected skeletons and highlight the use of approaches herein to shed light on disease pathophysiology in corals.

Scientific Reports↗

CoralCache: A virtual coral core repository for transparent and reproducible annual growth rate analyses

As science fields enter the Big Data revolution, open-access repositories are essential for addressing larger-scale questions than are possible for single researchers by making data findable, accessible, interoperable, and reusable (FAIR). Furthermore, transparent data and code are increasingly important for reproducible research, especially for data types that inherently require subjective human interpretations. These ideas are applicable to coral sclerochronology, as the field has long been characterized by individual researchers collecting and analyzing coral skeletal cores from their study sites without substantial data sharing or archiving of the core images to meet FAIR principles. Here, we present CoralCache, a virtual coral core repository that not only archives image datasets (i.e., digitized X-rays and computed tomography scans), but also observer interpretations of the density banding patterns. CoralCache is linked to a graphical user interface, CoralCT, which together offer a way forward for coral growth rate analysis that is reproducible and collaborative. The data organization systems presented here could also be readily applied to related archives such as tree rings or bivalve shells.

Earth System Science Data↗

Non-native and native organisms moving into high elevation and high latitude ecosystems in an era of climate change: new challenges for ecology and conservation

Cold environments at high elevation and high latitude are often viewed as resistant to biological invasions. However, climate warming, land use change and associated increased connectivity all increase the risk of biological invasions in these environments. Here we present a summary of the key discussions of the workshop ‘Biosecurity in Mountains and Northern Ecosystems: Current Status and Future Challenges’ (Flen, Sweden, 1–3 June 2015). The aims of the workshop were to (1) increase awareness about the growing importance of species expansion—both non-native and native—at high elevation and high latitude with climate change, (2) review existing knowledge about invasion risks in these areas, and (3) encourage more research on how species will move and interact in cold environments, the consequences for biodiversity, and animal and human health and wellbeing. The diversity of potential and actual invaders reported at the workshop and the likely interactions between them create major challenges for managers of cold environments. However, since these cold environments have experienced fewer invasions when compared with many warmer, more populated environments, prevention has a real chance of success, especially if it is coupled with prioritisation schemes for targeting invaders likely to have greatest impact. Communication and co-operation between cold environment regions will facilitate rapid response, and maximise the use of limited research and management resources.

Biological Invasions↗