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USGS2008

Seasonal and spatial variability in dissolved organic matter quantity and composition from the Yukon River basin, Alaska

[1] The seasonal and spatial variability of dissolved organic matter (DOM) quantity and chemical composition were investigated in the Yukon River basin of Alaska, United States, and northwestern Canada. Dissolved organic carbon (DOC), chromophoric DOM (CDOM), and dissolved lignin phenols were measured across a range of source waters and the seasonal hydrograph. Strong relationships were determined between CDOM and both DOC and lignin phenols, highlighting the potential for deriving detailed spatial and temporal distributions of DOM composition from CDOM monitoring. Maximum concentrations of measured parameters were observed during the spring flush, when DOM had a remarkably high content of aromatic vascular plant material derived from surface soil and litter layers. A larger portion of riverine DOM was attributed to vascular plant sources than previously believed by utilizing representative vegetation leachates and a soil pore water as end‐members. In combination with recent studies highlighting export of young, labile DOM during the spring flush in northern high‐latitude river systems, our results suggest riverine DOM is less degraded and more labile than previously thought with clear ramifications for its biomineralization or photo‐oxidation in marine environments.

Global Biogeochemical Cycles↗

USGS2018

Ecological changes in the nannoplankton community across a shelf transect during the onset of the Paleocene-Eocene Thermal Maximum

Warming and other environmental changes during the Paleocene‐Eocene thermal maximum (PETM) led to profound shifts in the composition and structure of nannoplankton assemblages. Here we analyze the nature of these changes in expanded records from the Cambridge‐Dorchester and Mattawoman Creek‐Billingsley Road cores in Maryland. These cores comprise part of a transect of five paleoshelf cores from Maryland and New Jersey. We integrate multivariate analysis of assemblage data with proxy data to revise understanding of the paleoecological affinities of key species. In particular, Discoaster and Fasciculithus are interpreted as thermophiles without adaptation to particular nutrient levels, while Hornibrookina is considered an opportunist adapted to highly variable nearshore environments. Together the cores show consistent margin‐wide changes across the onset of the PETM, including a pulse of preevent warming, possibly combined with lower salinity, high seasonality, or increased turbidity. The event itself was characterized by continued warming and eutrophication across the paleoshelf. The Maryland sites experienced higher environmental variability as a result of their proximity to large river systems.

Paleoceanography and Paleoclimatology↗

USGS2022

The influence of drying on the aeolian transport of river-sourced sand

Transgression and regression of water levels (stages) have impacted the evolution of aeolian landforms and sedimentary deposits throughout geologic history. We studied this phenomenon over a five-day period of reduced flow on the Colorado River in Grand Canyon National Park, AZ, USA, in March 2021. These transient low flows exposed river-channel sand deposits to the air, causing progressive desiccation (drying) and thereby making these deposits susceptible to aeolian transport. We measured aeolian threshold friction velocities ( u *t ) for sand saltation and PM10 dust emissions, as well as other characteristics, on a subaerially exposed sandbar and downwind aeolian dunefield during each day of the low river flow. The sandbar transitioned from supply-limited to transport-limited aeolian sediment transport conditions during the regression in river water stage. A possible tipping point between the two transport conditions occurred approximately 48 hours after the drop in river flow. The empirically measured u *t decreased as the sandbar sediment dried with increased subaerial exposure time. Theoretical estimates and empirical measurements of u *t corresponded closely on the aeolian dunefield and on the sandbar when it was drier during the third and fourth day of the experiment. Eighty-seven percent of the variability in u *t was explained by empirical models that provide practical estimates of aeolian transport potential of subaerial river sediment deposits using monitoring data that are commonly available in this and other river systems. The work provides theoretical insight into the response of aeolian processes to sediment supply changes driven by periods of anthropogenic activity, drought, and climate change.

Arizona↗

USGS2025

High resolution mapping of submerged sediment size and suitable salmon spawning habitat using topo-bathymetric Lidar in the Santiam Basin, Oregon

The distribution of river-bed grain sizes plays a foundational role in river morphology and ecology. River-bed grain size is a key driver of channel form and process, and has first order effects on aquatic macroinvertebrate assemblages, fish nesting, and biogeochemical processes. Despite this importance, tools to spatially quantify grain-size distributions, particularly submerged grain-size distributions, are lacking. Efforts to address this knowledge gap include developing optical and sonographic tools, however, these approaches have limitations, especially in shallow rivers and over large spatial extents. This study quantifies submerged grain size at high resolution (1 m 2 ) across 260 km of geomorphically diverse river corridors in the Santiam River Basin, Oregon, by pairing bathymetric Lidar point clouds with georeferenced pebble counts. Results suggest that derivatives of Lidar point clouds are able to accurately estimate measured median grain size across seven of the eight river reaches investigated, including reaches above and below high-head dams. Spatial analysis of predicted grain-sizes in the context of Chinook salmon spawning habitat suggests that suitable size sediment patches in the upper, unregulated reaches the study basin is typically small and unorganized. In contrast, the larger rivers downstream of high-head dams typically have larger areas of suitable spawning gravels. This method may be useful for quantification of fish and macroinvertebrates habitats, surface grain-size metrics for sediment transport models, and monitoring of natural and anthropogenic changes in river systems.

Oregon↗

USGS1996

Erosional and depositional patterns associated with the 1993 Missouri River floods inferred from SIR-C and TOPSAR radar data

The Missouri River floods of 1993 caused significant and widespread damage to the floodplains between Kansas City and St. Louis. Immediately downstream of levee breaks, flood waters scoured the bottoms. As the floodwaters continued, they spread laterally and deposited massive amounts of sand as crevasse splays on top of agricultural fields. We explore the use of radar interferometry and backscatter data for quantitative estimation of scour and deposition for Jameson Island/Arrow Rock Bottoms and Lisbon Bottoms, two bottoms that were heavily damaged during the floods and subsequently abandoned. Shuttle imaging radar C (SIR-C) L band (24 cm) HH (horizontally transmitted and horizontally received) radar backscatter data acquired in October 1994 were used together with a distorted Born approximation canopy scattering model to determine that the abundance of natural leafy forbs controlled the magnitude of backscatter for former agricultural fields. Forb areal density was found to be inversely correlated with thickness of sand deposited during the floods, presumably because thick sands prevented roots from reaching nutrient rich, moist bottoms soils. Using the inverse relationship, a lower bound for the mass of sand added was found to be 6.3 million metric tons over the 17 km 2 study area. Digital elevation data from topographic synthetic aperture radar (TOPSAR) C band (5.6 cm) interferometric observations acquired in August 1994 were compared to a series of elevation profiles collected on the ground. Vertical errors in TOPSAR were estimated to range from 1 to 2 m, providing enough accuracy to generate an estimate of total mass (4.7 million metric tons) removed during erosion of levees and scour of the bottoms terrains. Net accretion of material to the study areas is consistent with the geologic record of major floods where sediment-laden floodwaters crested over natural levees, initially scoured into the bottoms, and then deposited sands as crevasse splays as the flows spread out and slowed by frictional dissipation. The addition of artificial levees to the Missouri River system has undoubtedly enhanced flood damage, although quantitative estimation of the degree of enhancement will require additional work.

Journal of Geophysical Research E: Planets↗

USGS2014

Invasive hybridization in a threatened species is accelerated by climate change

Climate change will decrease worldwide biodiversity through a number of potential pathways 1 , including invasive hybridization 2 (cross-breeding between invasive and native species). How climate warming influences the spread of hybridization and loss of native genomes poses difficult ecological and evolutionary questions with little empirical information to guide conservation management decisions 3 . Here we combine long-term genetic monitoring data with high-resolution climate and stream temperature predictions to evaluate how recent climate warming has influenced the spatio-temporal spread of human-mediated hybridization between threatened native westslope cutthroat trout ( Oncorhynchus clarkii lewisi ) and non-native rainbow trout ( Oncorhynchus mykiss ), the world’s most widely introduced invasive fish 4 . Despite widespread release of millions of rainbow trout over the past century within the Flathead River system 5 , a large relatively pristine watershed in western North America, historical samples revealed that hybridization was prevalent only in one (source) population. During a subsequent 30-year period of accelerated warming, hybridization spread rapidly and was strongly linked to interactions between climatic drivers—precipitation and temperature—and distance to the source population. Specifically, decreases in spring precipitation and increases in summer stream temperature probably promoted upstream expansion of hybridization throughout the system. This study shows that rapid climate warming can exacerbate interactions between native and non-native species through invasive hybridization, which could spell genomic extinction for many species.

Alberta, Idaho, Montana↗

USGS2024

Database of surface water diversion sites and daily withdrawals for the upper Colorado River Basin, 1980–2022

The Colorado River drains about 8% of the conterminous United States, provides water for 40 million people, and is one of the most overallocated rivers in the world. As the upper Colorado River Basin (UCOL) contributes an estimated 92% of the total basin natural streamflow, knowledge of the location and amount of surface water withdrawals in the UCOL is important for managing the Colorado River system. Since the UCOL encompasses portions of five states, water use data are dispersed among numerous federal and state agency databases, and there is no centralized dataset that documents surface water use within the entire UCOL at a fine spatial and temporal resolution. This article presents an inventory of 1,358 major structures that divert surface water from and within the UCOL with corresponding daily time series withdrawal records from 1980 through 2022. Data compilation efforts, processing methods, and contents of this diversion database are documented, and summary information is provided.

Arizona, Colorado, New Mexico, Utah, Wyoming↗

USGS2002

Intraspecific phylogeography of Lasmigona subviridis (Bivalvia: Unionidae): Conservation implications of range discontinuity

A nucleotide sequence analysis of the first internal transcribed spacer region (ITS-1) between the 5.8S and 18S ribosomal DNA genes (640 bp) and cytochrome c oxidase subunit I (COI) of mitochondrial DNA (mtDNA) (576 bp) was conducted for the freshwater bivalve Lasmigona subviridis and three congeners to determine the utility of these regions in identifying phylogeographic and phylogenetic structure. Sequence analysis of the ITS-1 region indicated a zone of discontinuity in the genetic population structure between a group of L. subviridis populations inhabiting the Susquehanna and Potomac Rivers and more southern populations. Moreover, haplotype patterns resulting from variation in the COI region suggested an absence of gene exchange between tributaries within two different river drainages, as well as between adjacent rivers systems. The authors recommend that the northern and southern populations, which are reproductively isolated and constitute evolutionarily significant lineages, be managed as separate conservation units. Results from the COI region suggest that, in some cases, unionid relocations should be avoided between tributaries of the same drainage because these populations may have been reproductively isolated for thousands of generations. Therefore, unionid bivalves distributed among discontinuous habitats (e.g. Atlantic slope drainages) potentially should be considered evolutionarily distinct. The DNA sequence divergences observed in the nuclear and mtDNA regions among the Lasmigona species were congruent, although the level of divergence in the COI region was up to three times greater. The genus Lasmigona , as represented by the four species surveyed in this study, may not be monophyletic.

Delaware, Maryland, North Carolina, Pennsylvania, ↗

USGS2003

Conservation genetics of North American freshwater mussels Amblema and Megalonaias

Freshwater bivalves are among the most endangered groups of organisms in North America. Efforts to protect the declining mussel fauna are confounded by ambiguities associated with recognition of distinct evolutionary entities or species. This, in part, is due to the paucity of reliable morphological characters for differentiating taxa. We have employed allozymes and DNA sequence data to search for diagnosably distinct evolutionary entities within two problematic genera of unionid mussels, Amblema and Megalonaias. Within the genus Amblema three species are recognized based on our DNA sequence data for the mitochondrial 16S rRNA and allozyme data (Amblema neislerii, A. plicata, and A. elliotti). Only one taxonomically distinct entity is recognized within the genus Megalonaias—M. nervosa. Megalonaias boykiniana of the Apalachicolan Region is not diagnosable and does not warrant specific taxonomic status. Interestingly, Megalonaias from west of the Mississippi River, including the Mississippi, exhibited an allozyme and mtDNA haplotype frequency shift suggestive of an east-west dichotomy. The results of this study eliminate one subspecies of Amblema and increase the range of A. plicata. This should not affect the conservation status of “currently stable” assigned to A. plicata by Williams et al. (1993). The conservation status of A. elliotti needs to be reexamined because its distribution appears to be limited to the Coosa River System in Alabama and Georgia.

Conservation Biology↗

USGS2003

CALFED: An experiment in science and decisionmaking

The CALFED Bay-Delta Program faces a challenging assignment: to develop a collaborative state-federal management plan for the complex river system and involve multiple stakeholders (primarily municipal, agricultural, and environmental entities) whose interests frequently are in direct conflict. Although many resource-management issues involve multiple stakeholders and conflict is integral to their discussion, the CALFED experience is unique because of its shared state and federal roles, the magnitude and significance of stakeholder participation, and the complexity of the scientific issues involved.

Environment↗

USGS1999

Ozone-induced changes in natural organic matter (NOM) structure

Hydrophobic organic acids (combined humic and fulvic acids), obtained from an Antarctic Lake with predominantly microbially derived organic carbon sources and two US river systems with terrestrial organic carbon sources, were ozonated. Several analyses, including 13 C‐NMR, UV absorbance, fluorescence, hydrophobic/transphilic classification, and potentiometric titrations, were performed before and after ozonation. Ozonation reduced aromatic carbon content, selectively reducing phenolic carbon content. Ozonation of the samples resulted in increased aliphatic, carboxyl, plus acetal and ketal anomeric carbon content and shifted towards less hydrophobic compounds.

Ozone: Science and Engineering↗

USGS1993

First collection of rudd, Scardinius erythrophthalmus (Cyprinidae), in the New River, West Virginia

We collected the first rudd, Scardinius erythrophthalmus (Cyprinidae), from the New (Kanawha) River drainage, West Virginia. The rudd has now been reported from 12 states (Arkansas, Kansas, Illinois, Massachusetts, Maine, Missouri, New York, Oklahoma, Virginia, Wisconsin, and West Virginia) and several major river systems. The rapid spread of the rudd has apparently been facilitated by bait dealers. Despite its widespread distribution, there have been no investigations of potential interactions with native aquatic fauna.

Journal of Freshwater Ecology↗

USGS2011

Relations between benthic community structure and metals concentrations in aquatic macroinvertebrates: Clark Fork River, Montana

We sampled macroinvertebrate communities at six sites on the upper Clark Fork River, Montana, to determine relations between macroinvertebrate community structure and metals in invertebrates and the best benthic community metrics to use for ranking sites based on the relative severity of the effects of metals. Concentrations (μg/g) of six metals in invertebrates were determined: Al (range = 591–4193), As (2.7–34.1), Cd (0.13–8.38), Cu (26–1382), Pb (0.54–67.1), and Zn (212–1665). Concentrations of As, Cd, Cu, Pb, and total metals were significantly correlated with at least one benthic metric. Copper (r = 0.88–0.94) and total metals (r = 0.90–0.97) provided the most highly significant correlations. Based on longitudinal site comparisons of metals in invertebrates, benthic community structure, and differences between proportionally scaled ranks, five benthic metrics provided the best indicators of relative impact: taxa richness, Ephemeroptera-Plecoptera-Trichoptera (EPT) richness, chironomid richness, percentage of the most dominant taxon, and density. The two sites with the highest accumulations of invertebrate metals also demonstrated the greatest relative degree of impact based on these parameters. The most meaningful combinations of metrics indicate that the benthic community at the most upstream site is being severely impacted by metals. Two sites demonstrated little or no negative impact, and three sites demonstrated low or moderate levels of negative impacts, which may be due to a combination of metals and other factors such as organic enrichment. We recommend that benthic community structure and metals in invertebrates collected from riffle habitats be used to determine relative impacts in metals-contaminated river systems, owing to their close relation to metal availability and transfer to higher trophic levels.

Montana↗

USGS2011

Movement and survival of brown trout and rainbow trout in an ozark tailwater river

We evaluated the movement of adult brown trout Salmo trutta and rainbow trout Oncorhynchus mykiss in relation to a catch-andrelease area in the White River downstream from Beaver Dam, Arkansas. Nine fish of each species were implanted with radio transmitters and monitored from July 1996 to July 1997. The 1.5- km river length of a catch-and-release area (closed to angler harvest) was greater than the total linear range of 72% of the trout (13 of 18 fish), but it did not include two brown trout spawning riffles, suggesting that it effectively protects resident fish within the catch-and-release area except during spawning. The total detected linear range of movement varied from 172 to 3,559 m for brown trout and from 205 to 3,023mfor rainbow trout. The movements of both species appeared to be generally similar to that in unregulated river systems. The annual apparent survival of both trout species was less than 0.40, and exploitation was 44%.Management to protect fish on spawning riffles may be considered if management for wild brown trout becomes a priority. ?? American Fisheries Society 2011.

North American Journal of Fisheries Management↗

USGS2012

Effect of brook trout removal from a spawning stream on an adfluvial population of Lahontan cutthroat trout

Independence Lake (Nevada and Sierra counties, California) harbors the only extant native population of Lahontan cutthroat trout Oncorhynchus clarkii henshawi in the Truckee River system and one of two extant adfluvial populations in the Lahontan basin. The persistence of this population has been precarious for more than 50 years, with spawning runs consisting of only 30–150 fish. It is assumed that this population was much larger prior to the introduction of nonnative brook trout Salvelinus fontinalis . Brook trout overlap with cutthroat trout in upper Independence Creek, where the cutthroat trout spawn and their resulting progeny emigrate to Independence Lake. In 2005, we began removing brook trout from upper Independence Creek using electrofishers and monitored the cutthroat trout population. Stomach analysis of captured brook trout revealed cutthroat trout fry, and cutthroat trout fry survival increased significantly from 4% to 12% with brook trout removal. Prior to brook trout removal, the only Lahontan cutthroat trout progeny emigrating to Independence Lake were fry; with brook trout removal, juveniles were found entering the lake. In 2010, 237 potential spawners passed a prefabricated weir upstream of Independence Lake. Although the results of this study suggest that brook trout removal from upper Independence Creek has had a positive influence on the population dynamics of Independence Lake Lahontan cutthroat trout, additional years of removal are needed to assess the ultimate effect this action will have upon the cutthroat trout population.

California↗

USGS2012

Effect of survey design and catch rate estimation on total catch estimates in Chinook salmon fisheries

Roving–roving and roving–access creel surveys are the primary techniques used to obtain information on harvest of Chinook salmon Oncorhynchus tshawytscha in Idaho sport fisheries. Once interviews are conducted using roving–roving or roving–access survey designs, mean catch rate can be estimated with the ratio-of-means (ROM) estimator, the mean-of-ratios (MOR) estimator, or the MOR estimator with exclusion of short-duration (≤0.5 h) trips. Our objective was to examine the relative bias and precision of total catch estimates obtained from use of the two survey designs and three catch rate estimators for Idaho Chinook salmon fisheries. Information on angling populations was obtained by direct visual observation of portions of Chinook salmon fisheries in three Idaho river systems over an 18-d period. Based on data from the angling populations, Monte Carlo simulations were performed to evaluate the properties of the catch rate estimators and survey designs. Among the three estimators, the ROM estimator provided the most accurate and precise estimates of mean catch rate and total catch for both roving–roving and roving–access surveys. On average, the root mean square error of simulated total catch estimates was 1.42 times greater and relative bias was 160.13 times greater for roving–roving surveys than for roving–access surveys. Length-of-stay bias and nonstationary catch rates in roving–roving surveys both appeared to affect catch rate and total catch estimates. Our results suggest that use of the ROM estimator in combination with an estimate of angler effort provided the least biased and most precise estimates of total catch for both survey designs. However, roving–access surveys were more accurate than roving–roving surveys for Chinook salmon fisheries in Idaho.

Idaho↗

USGS2013

Creel survey sampling designs for estimating effort in short-duration Chinook salmon fisheries

Chinook Salmon Oncorhynchus tshawytscha sport fisheries in the Columbia River basin are commonly monitored using roving creel survey designs and require precise, unbiased catch estimates. The objective of this study was to examine the relative bias and precision of total catch estimates using various sampling designs to estimate angling effort under the assumption that mean catch rate was known. We obtained information on angling populations based on direct visual observations of portions of Chinook Salmon fisheries in three Idaho river systems over a 23-d period. Based on the angling population, Monte Carlo simulations were used to evaluate the properties of effort and catch estimates for each sampling design. All sampling designs evaluated were relatively unbiased. Systematic random sampling (SYS) resulted in the most precise estimates. The SYS and simple random sampling designs had mean square error (MSE) estimates that were generally half of those observed with cluster sampling designs. The SYS design was more efficient (i.e., higher accuracy per unit cost) than a two-cluster design. Increasing the number of clusters available for sampling within a day decreased the MSE of estimates of daily angling effort, but the MSE of total catch estimates was variable depending on the fishery. The results of our simulations provide guidelines on the relative influence of sample sizes and sampling designs on parameters of interest in short-duration Chinook Salmon fisheries.

Idaho↗

USGS2015

Combining split-beam and dual-frequency identification sonars to estimate abundance of anadromous fishes in the Roanoke River, North Carolina

Riverine hydroacoustic techniques are an effective method for evaluating abundance of upstream migrating anadromous fishes. To use these methods in the Roanoke River, North Carolina, at a wide site with uneven bottom topography, we used a combination of split-beam sonar and dual-frequency identification sonar (DIDSON) deployments. We aimed a split-beam sonar horizontally to monitor midchannel and near-bottom zones continuously over the 3-month spring monitoring periods in 2010 and 2011. The DIDSON was rotated between seven cross-channel locations (using a vertical aim) and nearshore regions (using horizontal aims). Vertical deployment addressed blind spots in split-beam coverage along the bottom and provided reliable information about the cross-channel and vertical distributions of upstream migrants. Using a Bayesian framework, we modeled sonar counts within four cross-channel strata and apportioned counts by species using species proportions from boat electrofishing and gill netting. Modeled estimates (95% credible intervals [CIs]) of total upstream migrants in 2010 and 2011 were 2.5 million (95% CI, 2.4–2.6 million) and 3.6 million (95% CI, 3.4–3.9 million), respectively. Results indicated that upstream migrants are extremely shore- and bottom-oriented, suggesting nearshore DIDSON monitoring improved the accuracy and precision of our estimates. This monitoring protocol and model may be widely applicable to river systems regardless of their cross-sectional width or profile.

North American Journal of Fisheries Management↗