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USGS2014

Soil respiration patterns and controls in limestone cedar glades

Aims Drivers of soil respiration ( R s ) in rock outcrop ecosystems remain poorly understood. We investigated these drivers in limestone cedar glades, known for their concentrations of endemic plant species and for seasonal hydrologic extremes (xeric and saturated conditions), and compared our findings to those in temperate grasslands and semi-arid ecosystems. Methods We measured R s , soil temperature ( T s ), volumetric soil water content (SWC), soil organic matter (SOM), soil depth, and vegetation cover monthly over 16 mo and analyzed effects of these variables on R s . Results Seasonally, R s primarily tracked T s (r 2 =0.77; P < 0.01); however R s was depressed during a summer drought. SOM was highly variable spatially, and incorporating SOM effects into the R s model dramativally improved model performance. Both shallow soil and sparse vegetation cover were also associated with lower R s . Conclusions Soil depth, SOM, and vegetation cover were important drivers of R s in limestone cedar glades. Seasonal R s patterns reflected those for mesic temperate grasslands more than for semi-arid ecosystems, in that R s primarily tracked temperature for most of the year.

Plant and Soil↗

USGS1978

Impacts of vehicles on natural terrain at seven sites in the San Francisco Bay area

The impacts of off-road vehicles on vegetation and soil were investigated at seven representative sites in the San Francisco Bay area. Plant cover of grass and chaparral (with shrubs to 4 m tall) have been stripped by the two- and four-wheel vehicles in use. Impacts on loamy soils include increased surface strength (as much as 275 bars), increased bulk density (averaging 18%) to depths of 90 cm or more, reduction of soil moisture by an average 43% to 30 cm depths, greatly reduced infiltration, extension of the diurnal temperature range by as much as 12??C, and reduction of organic carbon by an average 33% in exposed soils. Very sandy soils respond similarly to vehicular use except that moisture is increased and surface strength of beach sand is decreased. These physical and chemical impacts reduce the land's capability of restoring its vegetative cover, which in turn adversely affects animal populations. Both the loss of plant cover and the physical changes caused by vehicles promote erosion. Measured soil and substrate losses from vehicular use zones range from 7 to 1180 kg/m2. The estimated erosion rate of the Chabot Park site exceeds the rate of erosion considered a serious problem by a factor 30, it exceeds United States Soil Conservation Service tolerance values by a factor of 46, and it exceeds average San Francisco Bay area erosion rates by a factor of 17. The resulting soil losses are effectively permanent. Neither the increased sediment yield nor the increased runoff is accomodated on the sites of use, and both are causing adverse effects to neighboring properties. ?? 1978 Springer-Verlag New York Inc.

Environmental Geology↗

USGS2014

Strategies for preventing invasive plant outbreaks after prescribed fire in ponderosa pine forest

Land managers use prescribed fire to return a vital process to fire-adapted ecosystems, restore forest structure from a state altered by long-term fire suppression, and reduce wildfire intensity. However, fire often produces favorable conditions for invasive plant species, particularly if it is intense enough to reveal bare mineral soil and open previously closed canopies. Understanding the environmental or fire characteristics that explain post-fire invasive plant abundance would aid managers in efficiently finding and quickly responding to fire-caused infestations. To that end, we used an information-theoretic model-selection approach to assess the relative importance of abiotic environmental characteristics (topoedaphic position, distance from roads), pre-and post-fire biotic environmental characteristics (forest structure, understory vegetation, fuel load), and prescribed fire severity (measured in four different ways) in explaining invasive plant cover in ponderosa pine forest in South Dakota’s Black Hills. Environmental characteristics (distance from roads and post-fire forest structure) alone provided the most explanation of variation (26%) in post-fire cover of Verbascum thapsus (common mullein), but a combination of surface fire severity and environmental characteristics (pre-fire forest structure and distance from roads) explained 36–39% of the variation in post-fire cover of Cirsium arvense (Canada thistle) and all invasives together. For four species and all invasives together, their pre-fire cover explained more variation (26–82%) in post-fire cover than environmental and fire characteristics did, suggesting one strategy for reducing post-fire invasive outbreaks may be to find and control invasives before the fire. Finding them may be difficult, however, since pre-fire environmental characteristics explained only 20% of variation in pre-fire total invasive cover, and less for individual species. Thus, moderating fire intensity or targeting areas of high severity for post-fire invasive control may be the most efficient means for reducing the chances of post-fire invasive plant outbreaks when conducting prescribed fires in this region.

South Dakota, Wyoming↗

USGS2020

Negative effects of an allelopathic invader on AM fungal plant species drive community‐level responses

The mechanisms causing invasive species impact are rarely empirically tested, limiting our ability to understand and predict subsequent changes in invaded plant communities. Invader disruption of native mutualistic interactions is a mechanism expected to have negative effects on native plant species. Specifically, disruption of native plant‐fungal mutualisms may provide non‐mycorrhizal plant invaders an advantage over mycorrhizal native plants. Invasive Alliaria petiolata (garlic mustard) produces secondary chemicals toxic to soil microorganisms including mycorrhizal fungi, and is known to induce physiological stress and reduce population growth rates of native forest understory plant species. Here, we report on a 11‐yr manipulative field experiment in replicated forest plots testing if the effects of removal of garlic mustard on the plant community support the mutualism disruption hypothesis within the entire understory herbaceous community. We compare community responses for two functional groups: the mycorrhizal vs. the non‐mycorrhizal plant communities. Our results show that garlic mustard weeding alters the community composition, decreases community evenness, and increases the abundance of understory herbs that associate with mycorrhizal fungi. Conversely, garlic mustard has no significant effects on the non‐mycorrhizal plant community. Consistent with the mutualism disruption hypothesis, our results demonstrate that allelochemical producing invaders modify the plant community by disproportionately impacting mycorrhizal plant species. We also demonstrate the importance of incorporating causal mechanisms of biological invasion to elucidate patterns and predict community‐level responses.

Ecology↗

USGS2016

Greenhouse gas emissions from a created brackish marsh in eastern North Carolina

Tidal marsh creation helps remediate global warming because tidal wetlands are especially proficient at sequestering carbon (C) in soils. However, greenhouse gas (GHG) losses can offset the climatic benefits gained from C storage depending on how these tidal marshes are constructed and managed. This study attempts to determine the GHG emissions from a 4–6 year old created brackish marsh, what environmental factors governed these emissions, and how the magnitude of the fluxes relates to other wetland ecosystems. The static flux chamber method was used to measure GHG fluxes across three distinct plant zones segregated by elevation. The major of soil GHG fluxes from the marsh were from CO 2 (−48–192 mg C m -2 h -1 ), although it was near the lower end of values reported from other wetland types having lower salinities, and would mostly be offset by photosynthetic uptake in this created brackish marsh. Methane flux was also low (−0.33–0.86 mg C m -2 h -1 ), likely inhibited by the high soil SO 4 2− and soil redox potentials poised above −150 mV in this in this created brackish marsh environment. Low N 2 O flux (−0.11–0.10 mg N m -2 h -1 ) was due to low soil NO 3 − and soil redox conditions favoring complete denitrification. GHG fluxes from this created brackish marsh were generally lower than those recorded from natural marshes, suggesting that C sequestration may not be offset by the radiative forcing from soil GHG emissions if projects are designed properly.

North Carolina↗

USGS2009

Effects of fire temperature on the physical and chemical characteristics of the ash from two plots of Cork oak (Quercus Suber)

Cork oak, (Quercus suber) is widely distributed in the Mediterranean region, an area subject to frequent fires. The ash produced by burning can have impacts on the soil status and water resources that can differ according to the temperature reached during fire and the characteristics of the litter, defined as the dead organic matter accumulated on the soil surface prior to the fire. The aim of this work is to determine the physical and chemical characteristics of ash produced in laboratory experiments to approximate conditions typical of fires in this region. The litter of Quercus suber collected from two different plots on the Iberian Peninsula, Mas Bassets (Catalonia) and Albufeira (Portugal), was combusted at different temperatures for 2h. We measured Mass Loss (ML per cent), ash colour and CaCO 3 content, pH, Electrical Conductivity (EC) and the major cations (Ca 2+ , Mg 2+ , K + and Na + ) released from ash slurries created by mixing ash with deionized water. The results showed that ML per cent is higher at all temperatures in Albufeira samples compared to Mas Bassets samples, except at 550??C, and the rate of loss increases faster with temperature than the Mas Bassets samples. At 150??C the ash colour is yellowish, becoming reddish at 200- 250??C and black at 300??C. Above 400??C the ash is grey/white. This thermal degradation is mostly observed in Albufeira litter. The formation of CaCO 3 was identified at a lower temperature in Albufeira litter. At temperatures <300??C, pH and EC values are lower, rising at higher temperatures, especially in Albufeira slurries. The concentration of cations at lower temperatures does not differ substantially from the unburned sample except for Mg 2+ . The cation concentration increases at medium temperatures and decrease at higher temperatures, especially the concentration of divalent cations. The monovalent cations showed a larger concentration at moderate temperatures, mainly in Albufeira ash slurries. The analysis of the Ca:Mg ratio also showed that for the same temperature, a higher severity results for Albufeira litter. Potential negative effects on soil properties are observed at medium and higher temperatures. These negative effects include a higher percentage of mass loss, meaning more soil may be exposed to erosion, higher pH values and greater cation release from ash, especially monovalalent cations (K + ,Na + ) in higher proportions than the divalent ions (Ca 2+ , Mg 2+ ), that can lead to impacts on soil physical properties like aggregate stability. Furthermore, the ions in ash may alter soil chemistry which may be detrimental to some plants thus altering the recovery of these ecosystems after fire. Low intensity prescribed fire can be a useful tool to land management in these sites, due to the reduced effects of fire temperatures on the physical and chemical properties of surface litter, and can reduce the risk of high temperature wildland fires by reducing fuel loadings. From the perspective of water resources, lower fire temperatures produce fewer impacts on the chemistry of overland flow and there is less probability that the soil surface will be eroded. Copyright ?? 2009 John Wiley & Sons, Ltd.

Land Degradation and Development↗

USGS1997

Clonal foraging in perennial wheatgrasses: A strategy for exploiting patchy soil nutrients

1. Foraging by means of plasticity in placement of tillers in response to low- and high-nutrient patches was examined in the rhizomatous wheatgrass Elymus lanceolatus ssp. lanceolatus . Its ability to exploit soil nutrient patches was compared to that of the closely related but caespitose E. lanceolatu s ssp. wawawaiensis . 2. Clones of 14 genets of each taxon were planted in boxes consisting of two 30 × 30 cm cells: the `origin cell' where clones were planted, and the adjacent `destination cell', with each cell containing soil with either low or high levels of nutrients. 3. The rhizomatous taxon, which can produce intravaginal, short-rhizome and long-rhizome tillers, preferentially produced short-rhizome and intravaginal tillers in high-nutrient destination cells. Effects of nutrient status of the origin cell as well as of the destination cell on total tiller numbers indicated clonal integration, yet tiller placement responded to local conditions. 4. Roots of both taxa accessed nutrients in destination cells (the caespitose subspecies by root growth only), and above-ground biomass of both taxa increased to a similar extent with high-nutrient destination cells. With the patch sizes used in this experiment, root growth was as important as ramet placement in exploiting nutrients in destination cells. 5 There was no relationship between degree of plasticity in ramet placement and biomass of the clone when high-nutrient destination cells were present.

Journal of Ecology↗

USGS2008

Sulfur contamination in the Florida Everglades: Initial examination of mitigation strategies

Introduction Sulfate contamination of the Everglades is a serious water quality issue facing restoration of this ecosystem. Sulfate concentrations in some marsh areas are more than 60 times background concentrations, and sulfate in excess of background levels covers an estimated 60% of the freshwater Everglades (Orem et al., 1997; Stober et al., 1996 and 2001; Orem et al., 2004). The excess sulfate enters the Everglades in the discharge of canal water from the Everglades Agricultural Area (EAA). Excess phosphorus also enters the ecosystem in EAA canal water discharge (Koch and Reddy, 1992; Craft and Richardson, 1993; DeBusk et al. 1994; Zielinski et al., 1999). Existing data suggest that sulfur in fertilizer and soil amendments used in the EAA (both new additions and legacy sulfur in the soil) is a major source of excess sulfate entering the ecosystem (Bates et al., 2001 and 2002). Other potential sources of sulfate (including groundwater), however, need further investigation. The report by Gilmour et al. (2007b) in the 2007 South Florida Environmental Report provides a complete examination of the current state of knowledge of the sulfur contamination issue in the Everglades. Sulfate discharged from canals or leaking through levees into the ecosystem spreads out over a large area since, unlike phosphorus, it is not removed to any great extent by plant uptake. Sulfate slowly diffuses into the anoxic soils (peats) underlying the Everglades and stimulates microbial sulfate reduction (MSR), producing toxic hydrogen sulfide as a byproduct (Goldhaber and Kaplan, 1974; Berner, 1980; Rheinheimer, 1994). Hydrogen sulfide at contaminated sites may build up in sediments to concentrations thousands of times background levels (Gilmour et al., 2007b). The excess sulfate and sulfide has numerous deleterious impacts on the Everglades. One of the more environmentally important impacts is the link between sulfate contamination and methylmercury (MeHg) production in the ecosystem (Gilmour et al., 1998; Benoit et al., 1998, 1999a, b; Axelrad et al., 2007; Gilmour et al., 2007a). MeHg, a bioaccumulative neurotoxin, is produced primarily by methylation of ambient inorganic mercury during MSR (Compeau and Bartha, 1985; Gilmour et al., 1992; Munthe et al., 1995; Branfireun et al., 1999). Contamination of fish with MeHg is the most significant environmental contaminant issue in the USA in terms of number of locations impacted (Krabbenhoft and Wiener, 1999; USEPA, 1998). Neurotoxic MeHg represents a serious threat to wildlife (Bouton et al., 1999; Frederick et al., 1999; Heath and Frederick, 2005), and is a human health issue, with human exposure through fish consumption (Gilbert and Grant-Webster, 1995; Schober et al., 2003). In addition to its neurotoxic effects, MeHg may also be an endocrine disruptor that affects successful reproduction in fish and fish-eating wildlife (Klaper et al., 2006). South Florida has among the highest levels of MeHg in fish in the USA (Lambou et al., 1991). Experimental chamber (mesocosm) studies conducted in the Everglades have shown that sulfate addition stimulates the production and bioaccumulation of MeHg (Gilmour et al., 2007b). Inorganic mercury enters the Everglades primarily in rainfall, and most of the inorganic mercury in the rainfall appears to originate from outside of the USA (Hanisch, 1998). The origin of most inorganic mercury from outside of the USA severely limits the ability of state and Federal officials to limit MeHg production and bioaccumulation in fish in the Everglades by controlling emissions of inorganic mercury from various anthropogenic sources (e.g. coal-fired power plants, medical waste incinerators, cement manufacture). Thus, controlling sulfate inputs to the Everglades may represent the most effective way of minimizing MeHg production and bioaccumulation here. In addition to impacts on MeHg production and bioaccumulation, sulfur contamination has also dramatically altered redox p

Florida↗

USGS2014

Ecohydrology of dry regions: storage versus pulse soil water dynamics

Although arid and semiarid regions are defined by low precipitation, the seasonal timing of temperature and precipitation can influence net primary production and plant functional type composition. The importance of precipitation seasonality is evident in semiarid areas of the western U.S., which comprise the Intermountain (IM) zone, a region that receives important winter precipitation and is dominated by woody plants and the Great Plains (GP), a region that receives primarily summer precipitation and is dominated by perennial grasses. Although these general relationships are well recognized, specific differences in water cycling between these regions have not been well characterized. We used a daily time step soil water simulation model and twenty sites from each region to analyze differences in soil water dynamics and ecosystem water balance. IM soil water patterns are characterized by storage of water during fall, winter, and spring resulting in relatively reliable available water during spring and early summer, particularly in deep soil layers. By contrast, GP soil water patterns are driven by pulse precipitation events during the warm season, resulting in fluctuating water availability in all soil layers. These contrasting patterns of soil water—storage versus pulse dynamics—explain important differences between the two regions. Notably, the storage dynamics of the IN sites increases water availability in deep soil layers, favoring the deeper rooted woody plants in that region, whereas the pulse dynamics of the Great Plains sites provide water primarily in surface layers, favoring the shallow-rooted grasses in that region. In addition, because water received when plants are either not active or only partially so is more vulnerable to evaporation and sublimation than water delivered during the growing season, IM ecosystems use a smaller fraction of precipitation for transpiration (47%) than GP ecosystems (49%). Recognizing the pulse-storage dichotomy in soil water regimes between the IM and GP regions may be useful for understanding the potential influence of climate changes on soil water patterns and resulting dominant plant functional groups in both regions.

Ecosystems↗

USGS2019

Ecological effects of establishing a 40-year oasis protection system in a Northwestern China Desert

Aims: Desertification around oasis areas is a serious problem in semi-arid and arid regions, which is expected to continue into the future due to a rapidly increasing human population. Oasis protection systems are created to reverse desertification by recovering degraded soil and vegetation properties and improving ecosystem services. Most research has focused on the short-term effects of a single restoration practice using an individual vegetation or soil metric, while more complete assessments along a gradient of an entire oasis protection system have seldom been studied. In this study, soil and vegetation properties were measured along a 40-year oasis-protection system to assess the effectiveness of increasing land protection belts along a gradient from prohibiting grazing, to fencing shrubland, to establishing shrub- and tree-plantations in northwestern China. Methods: Three sites in each belt of the oasis-protection system were selected to measure soil texture, soil organic carbon, total nitrogen, total phosphorus, pH, electrical conductivity, and eight ions under the plant canopy and in the inter-canopy area, as well as to investigate plant community composition, diversity and productivity. Wind velocity and sand transportation rates were measured in each of the five belts during storm events. Results: Compared with shifting dunes in unprotected desert settings, the wind velocity and sand transportation rate decreased by 75 and 98%, respectively, when spring storms passed through the most protected plantation belts in the oasis system. Soil organic carbon, total nitrogen, total phosphorus significantly increased, along with the silt and clay contents, across the protection gradient, and reached their highest levels at the shrub- and tree-plantation belts. Similarly, the density, cover, and biomass of herbaceous plants also increased along the gradient. Despite these positive effects, there was a significant increase in soil salinity, sodicity, and desiccation at the shrub- and tree-plantation belts, which may negatively affect the future sustainability of the oasis-protection system under a predicted future drier and warming climate. Conclusions Although shrub and tree plantations improve soil fertility and favor the development of the herbaceous plant community, their environmental consequences (i.e., soil salinization and desiccation) need to be evaluated in the context of ecosystem restoration over the long-term, especially in arid regions.

Catena↗

USGS2015

Organic matter quantity and source affects microbial community structure and function following volcanic eruption on Kasatochi Island, Alaska

In August 2008, Kasatochi volcano erupted and buried a small island in pyroclastic deposits and fine ash; since then, microbes, plants and birds have begun to re-colonize the initially sterile surface. Five years post-eruption, bacterial 16S rRNA gene and fungal internal transcribed spacer (ITS) copy numbers and extracellular enzyme activity (EEA) potentials were one to two orders of magnitude greater in pyroclastic materials with organic matter (OM) inputs relative to those without, despite minimal accumulation of OM (< 0.2%C). When normalized by OM levels, post-eruptive surfaces with OM inputs had the highest β-glucosidase, phosphatase, NAGase and cellobiohydrolase activities, and had microbial population sizes approaching those in reference soils. In contrast, the strongest factor determining bacterial community composition was the dominance of plants versus birds as OM input vectors. Although soil pH ranged from 3.9 to 7.0, and %C ranged 100×, differentiation between plant- and bird-associated microbial communities suggested that cell dispersal or nutrient availability are more likely drivers of assembly than pH or OM content. This study exemplifies the complex relationship between microbial cell dispersal, soil geochemistry, and microbial structure and function; and illustrates the potential for soil microbiota to be resilient to disturbance.

Alaska↗

USGS2015

Plant phenolics and absorption features in vegetation reflectance spectra near 1.66 μm

Past laboratory and field studies have quantified phenolic substances in vegetative matter from reflectance measurements for understanding plant response to herbivores and insect predation. Past remote sensing studies on phenolics have evaluated crop quality and vegetation patterns caused by bedrock geology and associated variations in soil geochemistry. We examined spectra of pure phenolic compounds, common plant biochemical constituents, dry leaves, fresh leaves, and plant canopies for direct evidence of absorption features attributable to plant phenolics. Using spectral feature analysis with continuum removal, we observed that a narrow feature at 1.66 μm is persistent in spectra of manzanita, sumac, red maple, sugar maple, tea, and other species. This feature was consistent with absorption caused by aromatic C- H bonds in the chemical structure of phenolic compounds and non-hydroxylated aromatics. Because of overlapping absorption by water, the feature was weaker in fresh leaf and canopy spectra compared to dry leaf measurements. Simple linear regressions of feature depth and feature area with polyphenol concentration in tea resulted in high correlations and low errors (% phenol by dry weight) at the dry leaf ( r 2 = 0.95, RMSE = 1.0%, n = 56), fresh leaf ( r 2 = 0.79, RMSE = 2.1%, n = 56), and canopy ( r 2 = 0.78, RMSE = 1.0%, n = 13) levels of measurement. Spectra of leaves, needles, and canopies of big sagebrush and evergreens exhibited a weak absorption feature centered near 1.63 μm, short ward of the phenolic compounds, possibly consistent with terpenes. This study demonstrates that subtle variation in vegetation spectra in the shortwave infrared can directly indicate biochemical constituents and be used to quantify them. Phenolics are of lesser abundance compared to the major plant constituents but, nonetheless, have important plant functions and ecological significance. Additional research is needed to advance our understanding of the spectral influences of plant phenolics and terpenes relative to dominant leaf biochemistry (water, chlorophyll, protein/nitrogen, cellulose, and lignin).

International Journal of Applied Earth Observation↗

USGS2024

Increasing soil water drought in response to altered precipitation timing across the western United States

Recent trends of rising temperatures and longer droughts between precipitation events are impacting water-limited dryland ecosystems in the western United States. Although ecosystem drought response depends directly on soil moisture, trends in soil moisture (e.g., edaphic drought) remain more poorly explored than precipitation (e.g., meteorological drought), representing an important knowledge gap. Here, we applied the SOILWAT2 ecosystem water balance model to quantify long-term trends of soil moisture and edaphic drought using observed daily weather from 1976 to 2019 at 337 stations across the western United States. We assessed edaphic drought for different plant community types (grass dominated vs. shrub dominated), and explored variations with soil depth and texture. The duration of the longest edaphic drought in a given year increased by 1.5 ± 0.2 days/decade for grassy and 1.7 ± 0.2 days/decade for woody vegetation. Importantly, these trends in edaphic drought were consistent with but greater in magnitude compared with meteorological drought indicating more severe water stress for both plants and ecosystems. The correlation between meteorological drought and edaphic drought was greater under woody vegetation (0.45) compared with grass (0.34) and greater at surface soil depths (0–20 cm; 0.46) compared with the deeper soil (20–100 cm; 0.34). Among soil textures, the correlation between meteorological and edaphic drought was highest on sandy soils and lowest on finer textured silty soils. Using the biogeographic domains (eight western NEON domains), we found that the Pacific Northwest, Pacific Southwest, and Desert Southwest exhibited the strongest increases in edaphic drought through time, but lower correlation between meteorological and edaphic droughts. These findings characterize strong but variable connections between edaphic drought and meteorological drought across the western United States and demonstrate the critical influences of vegetation type, soil depth, and soil properties in mediating the magnitude and spatial distribution of edaphic drought.

western United States↗

USGS2008

Moist-soil seed abundance in managed wetlands in the Mississippi Alluvial Valley

Managed moist-soil units support early succession herbaceous vegetation that produces seeds, tubers, and other plant parts used by waterfowl in the Mississippi Alluvial Valley (MAV), USA. We conducted a stratified multi-stage sample survey on state and federal lands in the MAV of Arkansas, Louisiana, Mississippi, and Missouri during autumns 2002?2004 to generate a contemporary estimate of combined dry mass of seeds and tubers (herein seed abundance) in managed moist-soil units for use by the Lower Mississippi Valley Joint Venture (LMVJV) of the North American Waterfowl Management Plan. We also examined variation in mean seed abundance among moist-soil units in 2003 and 2004 in relation to management intensity (active or passive), soil pH and nutrient levels, proportional occurrence of plant life-forms (e.g., grass, flatsedge, and forb; vine; woody plants), and unit area. Estimates of mean seed abundance were similar in 2002 (X over bar = 537.1 kg/ha, SE = 100.1) and 2004 (X over bar = 555.2 kg/ha, SE = 105.2) but 35?40% less in 2003 (X over bar = 396.8 kg/ha, SE = 116.1). Averaged over years, seed abundance was 496.3 kg/ha (SE = 62.0; CV = 12.5%). Multiple regression analysis indicated seed abundance varied among moist-soil units inversely with proportional occurrence of woody vegetation and unit area and was greater in actively than passively managed units (R2adj = 0.37). Species of early succession grasses occurred more frequently in actively than passively managed units (P < 0.09), whereas mid- and late-succession plants occurred more often in passively managed units (P < 0.02). We recommend the LMVJV consider 556 kg/ha as a measure of seed abundance for use in estimating carrying capacity in managed moist-soil units on public lands in the MAV. We recommend active management of moist-soil units to achieve maximum potential seed production and further research to determine recovery rates of seeds of various sizes from core samples and the relationship between seed abundance and unit area.

Journal of Wildlife Management↗

USGS2026

Springtime formation of laminated soil carbonate rinds and changes in fluvial terrace soils on orbital timescales at Rio Mesa, Utah, USA

Laminated soil carbonate rinds are a Quaternary paleoclimate archive whose isotope composition is linked to soil formation conditions. At Rio Mesa, Utah (USA), we investigated the fidelity of rind records in a river terrace setting by determining the seasonal timing of rind formation and testing for inter-record replication. We infer soil carbonate formed in the spring season, contrasting with our prior inference of summer formation at Teasdale, Utah, ≈200 km distant. This apparent discrepancy occurs because of differences in the timing of the largest annual infiltration (spring vs. summer). At Rio Mesa, modern soil data show that soil carbonate δ 13 C would have high values (−2 to 2‰ VPDB) regardless of seasonal activity of C 3 versus C 4 plants because respiration rate is a strong control. We accordingly suggest reassessment of published records interpreting soil carbonate δ 13 C only via C 3 versus C 4 plant abundance. Three rind δ 13 C and δ 18 O records generally replicated. Intriguingly, rind δ 13 C may inversely correlate with summer insolation, evidence for global-scale influence on soils. Rind δ 18 O is not as clearly correlated with published western USA paleoclimate records, potentially due to regional differences in climate and because rinds record soil-specific processes. Our results support the fidelity of the soil carbonate rind paleoarchive and suggest that because rind formation seasonality is intimately tied to infiltration seasonality, spatial transects of rind records might be used to delineate boundaries between areas dominated by spring and summer infiltration, permitting reconstruction of the geographic extent of large-scale hydrologic phenomena such as the North American Monsoon.

Utah↗

USGS2024

Prion seeding activity in plant tissues detected by RT-QuIC

Prion diseases such as scrapie, bovine spongiform encephalopathy (BSE), and chronic wasting disease (CWD) affect domesticated and wild herbivorous mammals. Animals afflicted with CWD, the transmissible spongiform encephalopathy of cervids (deer, elk, and moose), shed prions into the environment, where they may persist and remain infectious for years. These environmental prions may remain in soil, be transported in surface waters, or assimilated into plants. Environmental sampling is an emerging area of TSE research and can provide more information about prion fate and transport once shed by infected animals. In this study, we have developed the first published method for the extraction and detection of prions in plant tissue using the real-time quaking-induced conversion (RT-QuIC) assay. Incubation with a zwitterionic surfactant followed by precipitation with sodium phosphotungstate concentrates the prions within samples and allows for sensitive detection of prion seeding activity. Using this protocol, we demonstrate that prions can be detected within plant tissues and on plant surfaces using the RT-QuIC assay.

Pathogens↗

USGS2011

Late Quaternary environmental change inferred from phytoliths and other soil-related proxies: Case studies from the central and southern Great Plains, USA

This study investigates stable carbon isotopes ( δ 13 C), opal phytolith assemblages, burnt phytoliths, microscopic charcoal and Sporormiella spores from modern soils and paleosols in Kansas and Oklahoma. Grass and dicot phytoliths in combination with δ 13 C are used as proxies for reconstructing the structure of grasslands and woodlands. Burnt grass phytoliths and microscopic charcoal are evaluated as proxies for reconstructing paleofire incidence. Concentrations of the fungal spore Sporormiella are used as a proxy for assessing large herbivore activity. These proxies were tested on various modern grassland communities of the central and southern Great Plains, including areas with bison, cattle, and small herbivores, and areas under different fire frequencies. Opal phytolith assemblages and δ 13 C values show that before cal 11 ka, C 3 grasses and woody plants predominated in areas that today are dominated by C 4 grasses. The origin of the shortgrass prairie dates back to about cal 10 ka. The origin of the tallgrass prairie, however, is not clear as phytolith data show variable assemblages throughout the Holocene (mixed-grass, tallgrass, and tallgrass–woodland mosaic). Different proxies (burnt phytoliths vs. charcoal) reveal different fire frequencies, but it is apparent that microfossil evidence for fire incidence is closely related to the abundance of woody plants in the landscape. Before cal 12 ka, soils show somewhat elevated concentration of Sporormiella , but lower concentrations than the modern high-density bison and cattle grazing areas. Throughout the Holocene, Sporormiella frequencies are low, which suggests lower large ungulate densities and perhaps high mobility.

Colorado, Kansas, New Mexico, Oklahoma, Texas↗

USGS2015

Soil ecology of a rock outcrop ecosystem: Abiotic stresses, soil respiration, and microbial community profiles in limestone cedar glades

Limestone cedar glades are a type of rock outcrop ecosystem characterized by shallow soil and extreme hydrologic conditions—seasonally ranging from xeric to saturated—that support a number of plant species of conservation concern. Although a rich botanical literature exists on cedar glades, soil biochemical processes and the ecology of soil microbial communities in limestone cedar glades have largely been ignored. This investigation documents the abiotic stress regime of this ecosystem (shallow soil, extreme hydrologic fluctuations and seasonally high soil surface temperatures) as well as soil physical and chemical characteristics, and relates both types of information to ecological structures and functions including vegetation, soil respiration, and soil microbial community metabolic profiles and diversity. Methods used in this investigation include field observations and measurements of soil physical and chemical properties and processes, laboratory analyses, and microbiological assays of soil samples. Stress factors quantified by this research include shallow soil (depth to bedrock ranging from 2.4 to 22.6 cm), volumetric soil water content levels seasonally ranging from xeric (below 5%) to saturated (above 50%), and seasonally extreme ground-surface temperatures (above 48°C). Findings from this research indicate that spatial and temporal heterogeneity exists in limestone cedar glades in terms of abiotic stress factors and soil physical and chemical properties. Several such soil properties (e.g. soil depth, organic matter levels, pH, and particle size distribution) are spatially correlated. These soil properties were statistically related to ecological structures and functions such as vegetation patterns, soil respiration, the density of culturable heterotrophic microbes in soil and metabolic diversity of soil microbial community profiles. In general, zones within limestone cedar glades that had relatively shallow soil, alkaline pH, low levels of organic matter and high levels of silt also tended to have depressed rates of soil respiration and reduced densities and metabolic diversity of culturable heterotrophic soil microbes. Additionally, seasonally-relevant stress factors including soil water content and temperatures at or near the soil surface were related to the same set of ecological structures and functions.

Tennessee↗