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USGS2005

Microbial biogeochemistry of uranium mill tailings

Uranium mill tailings (UMT) are the crushed ore residues from the extraction of uranium (U) from ores. Among the radioactive wastes associated with the nuclear fuel cycle, UMT are unique in terms of their volume and their limited isolation from the surficial environment. For this latter reason, their management and long-term fate has many interfaces with environmental microbial communities and processes. The interactions of microorganisms with UMT have been shown to be diverse and with significant consequences for radionuclide mobility and bioremediation. These radionuclides are associated with the U-decay series. The addition of organic carbon and phosphate is required to initiate the reduction of the U present in the groundwater down gradient of the mills. Investigations on sediment and water from the U-contaminated aquifer, indicates that the addition of a carbon source stimulates the rate of U removal by microbial reduction. Moreover, most attention with respect to passive or engineered removal of U from groundwaters focuses on iron-reducing and sulfate-reducing bacteria.

Advances in Applied Microbiology↗

USGS1961

Paleomagnetism

This chapter highlights the ways in which rocks become magnetized. It also interprets paleomagnetic results in terms of the theories of polar wandering, continental drift, and an expanding Earth. The chapter describes the salient characteristics and trends of the geomagnetic field during the period of direct observation. Several questions are posed concerning the extension of these properties back to earlier times. Some of these questions can now be answered from the results of paleomagnetic research. The intensity of the main dipole component of the geomagnetic field appears to have been decreasing since well before the period of direct observation. Furthermore, two important properties of the geomagnetic field have been established by spherical harmonic analysis. First, the field is derivable from a potential and, hence, contributions to the total field from currents flowing across the Earth–air interface are negligibly small. Secondly, 2–5% of the field is of external origin and is because of movements of charged particles in the space around the Earth.

Advances in Geophysics↗

USGS1999

Toward the use of remote sensing and other data to delineate functional types in terrestrial and aquatic systems

This chapter discusses the role that remotely sensed data play in improving the ability to document the distribution of global land cover types. If the relationships between the cover types and trace gas fluxes can be determined, then the dynamics of these fluxes can be established. The chapter discusses important aquatic systems—such as wetlands—and the land–water interface. Researchers have a wide variety of options available to utilize the remotely sensed data for the scaling of trace gas fluxes between terrestrial and aquatic ecosystems and the atmosphere. An important application of remote sensing for improving the understanding of trace gas fluxes is the classification of land cover types. Remote sensing is a powerful tool for the collection of environmental data. When combined with other more conventional data, they can be analyzed to extract a wide variety of environmental themes. Models can be developed for improving the fundamental understanding of the dynamics of complex interconnected systems that support and sustain life on earth.

Book chapter↗

USGS2002

Evaluation of a local grid refinement method for steady-state block-centered finite-difference groundwater models

A new method of local grid refinement for two-dimensional block-centered finite difference meshes that uses an iteration-based feedback to couple two separate grids has been developed. Its convergence properties have been evaluated and comparisons with alternative methods have been completed (Mehl and Hill, in review a). This work further investigates a difficulty encountered with the traditional telescopic mesh refinement (TMR) methods that lack a feedback. Results indicate: (1) Coupling the coarse grid with the refined grid in a numerically rigorous way that allows for a feedback can improve the coarse grid results; this improvement is not possible using the TMR methods because there is no feedback. (2) The TMR methods work well in situations where the better resolution of the locally refined grid has little influence on the overall flow-system dynamics, but if this is not true, lack of a feedback mechanism produced errors in head up to 6.8% and errors in cell-to-cell fluxes up to 7.1% for the case presented. (3) For the TMR methods, coupling using flux boundary conditions produces significant inconsistencies in the head distribution at the boundary interface. TMR inaccuracies can substantially effect parameter estimation (Mehl and Hill, in review b).

Developments in Water Science↗

USGS2000

Preface paper to the Semi-Arid Land-Surface-Atmosphere (SALSA) Program special issue

The Semi-Arid Land-Surface-Atmosphere Program (SALSA) is a multi-agency, multi-national research effort that seeks to evaluate the consequences of natural and human-induced environmental change in semi-arid regions. The ultimate goal of SALSA is to advance scientific understanding of the semi-arid portion of the hydrosphere-biosphere interface in order to provide reliable information for environmental decision making. SALSA approaches this goal through a program of long-term, integrated observations, process research, modeling, assessment, and information management that is sustained by cooperation among scientists and information users. In this preface to the SALSA special issue, general program background information and the critical nature of semi-arid regions is presented. A brief description of the Upper San Pedro River Basin, the initial location for focused SALSA research follows. Several overarching research objectives under which much of the interdisciplinary research contained in the special issue was undertaken are discussed. Principal methods, primary research sites and data collection used by numerous investigators during 1997-1999 are then presented. Scientists from about 20 US, five European (four French and one Dutch), and three Mexican agencies and institutions have collaborated closely to make the research leading to this special issue a reality. The SALSA Program has served as a model of interagency cooperation by breaking new ground in the approach to large scale interdisciplinary science with relatively limited resources.

Conference Paper↗

USGS2002

Natural attenuation of chlorinated solvents at Area 6, Dover Air Force Base: Groundwater biogeochemistry

Monitored natural attenuation (MNA) has recently emerged as a viable groundwater remediation technology in the United States. Area 6 at Dover Air Force Base (Dover, DE) was chosen as a test site to examine the potential for MNA of tetrachloroethene (PCE) and trichloroethene (TCE) in groundwater and aquifer sediments. A "lines of evidence" approach was used to document the occurrence of natural attenuation. Chlorinated hydrocarbon and biogeochemical data were used to develop a site-specific conceptual model where both anaerobic and aerobic biological processes are responsible for the destruction of PCE, TCE, and daughter metabolites. An examination of groundwater biogeochemical data showed a region of depleted dissolved oxygen with elevated dissolved methane and hydrogen concentrations. Reductive dechlorination likely dominated in the anaerobic portion of the aquifer where PCE and TCE levels were observed to decrease with a simultaneous increase in cis-1,2-dichloroethene (cis-DCE), vinyl chloride (VC), ethene, and dissolved chloride. Near the anaerobic/aerobic interface, concentrations of cis-DCE and VC decreased to below detection limits, presumably due to aerobic biotransformation processes. Therefore, the contaminant and daughter product plumes present at the site appear to have been naturally attenuated by a combination of active anaerobic and aerobic biotransformation processes. ?? 2002 Elsevier Science B.V. All rights reserved.

Journal of Contaminant Hydrology↗

USGS2003

The saturated zone at Yucca Mountain: An overview of the characterization and assessment of the saturated zone as a barrier to potential radionuclide migration

The US Department of Energy is pursuing Yucca Mountain, Nevada, for the development of a geologic repository for the disposal of spent nuclear fuel and high-level radioactive waste, if the repository is able to meet applicable radiation protection standards established by the US Nuclear Regulatory Commission and the US Environmental Protection Agency (EPA). Effective performance of such a repository would rely on a number of natural and engineered barriers to isolate radioactive waste from the accessible environment. Groundwater beneath Yucca Mountain is the primary medium through which most radionuclides might move away from the potential repository. The saturated zone (SZ) system is expected to act as a natural barrier to this possible movement of radionuclides both by delaying their transport and by reducing their concentration before they reach the accessible environment. Information obtained from Yucca Mountain Site Characterization Project activities is used to estimate groundwater flow rates through the site-scale SZ flow and transport model area and to constrain general conceptual models of groundwater flow in the site-scale area. The site-scale conceptual model is a synthesis of what is known about flow and transport processes at the scale required for total system performance assessment of the site. This knowledge builds on and is consistent with knowledge that has accumulated at the regional scale but is more detailed because more data are available at the site-scale level. The mathematical basis of the site-scale model and the associated numerical approaches are designed to assist in quantifying the uncertainty in the permeability of rocks in the geologic framework model and to represent accurately the flow and transport processes included in the site-scale conceptual model. Confidence in the results of the mathematical model was obtained by comparing calculated to observed hydraulic heads, estimated to measured permeabilities, and lateral flow rates calculated by the site-scale model to those calculated by the regional-scale flow model. In addition, it was confirmed that the flow paths leaving the region of the potential repository are consistent with those inferred from gradients of measured head and those independently inferred from water-chemistry data. The general approach of the site-scale SZ flow and transport model analysis is to calculate unit breakthrough curves for radionuclides at the interface between the SZ and the biosphere using the three-dimensional site-scale SZ flow and transport model. Uncertainties are explicitly incorporated into the site-scale SZ flow and transport abstractions through key parameters and conceptual models. ?? 2002 Elsevier Science B.V. All rights reserved.

Journal of Contaminant Hydrology↗

USGS2000

Characterization of seismic hazard and structural response by energy flux

Seismic safety of structures depends on the structure's ability to absorb the seismic energy that is transmitted from ground to structure. One parameter that can be used to characterize seismic energy is the energy flux. Energy flux is defined as the amount of energy transmitted per unit time through a cross-section of a medium, and is equal to kinetic energy multiplied by the propagation velocity of seismic waves. The peak or the integral of energy flux can be used to characterize ground motions. By definition, energy flux automatically accounts for site amplification. Energy flux in a structure can be studied by formulating the problem as a wave propagation problem. For buildings founded on layered soil media and subjected to vertically incident plane shear waves, energy flux equations are derived by modeling the buildings as an extension of the layered soil medium, and considering each story as another layer. The propagation of energy flux in the layers is described in terms of the upgoing and downgoing energy flux in each layer, and the energy reflection and transmission coefficients at each interface. The formulation results in a pair of simple finite-difference equations for each layer, which can be solved recursively starting from the bedrock. The upgoing and downgoing energy flux in the layers allows calculation of the energy demand and energy dissipation in each layer. The methodology is applicable to linear, as well as nonlinear structures. ?? 2000 Published by Elsevier Science Ltd.

Soil Dynamics and Earthquake Engineering↗

USGS2002

3D near-surface soil response from H/V ambient-noise ratios

The applicability of the horizontal-to-vertical (H/V) ambient-noise spectral ratio for characterizing earthquake site effects caused by nearsurface topography and velocity structures was evaluated at sites underlain by thick (i.e. >100 m) sediment deposits near the southern-end of the New Madrid seismic zone in the central United States. Three-component ambient-noise and velocity models derived from seismic (shearwave) refraction/reflection surveys showed that a relatively horizontal, sharp shear-wave velocity interface in the soil column resulted in an H/V spectral ratio with a single well-defined peak. Observations at sites with more than one sharp shear-wave velocity contrast and horizontally arranged soil layers resulted in at least two well-defined H/V spectral ratio peaks. Furthermore, at sites where there were sharp shear-wave velocity contrasts in nonhorizontal, near-surface soil layers, the H/V spectra exhibited a broad-bandwidth, relatively low amplitude signal instead of a single well-defined peak.

Soil Dynamics and Earthquake Engineering↗

USGS2000

Quantification of the microphytobenthic primary production in european intertidal mudflats - A modelling approach

A deterministic model quantifying the dynamics of the microphytobenthic biomass in the first centimeter of the mud was formulated as part of the MAST-III/INTRMUD project. The main modelled processes are production by photosynthesis, active vertical migration of the microphytobenthos and global biomass losses, encompassing grazing, mortality and resuspension during immersion periods. The model emphasizes the role of the interface between mud and air, which is crucial for the production. The microalgal biofilm present at the mud surface during day-time emersion periods induces most of the differences between microphytobenthos and phytoplankton communities dynamics. The study of the mathematical properties of the system, under some simplifying assumptions, shows the convergence of the solutions to a stable cyclic equilibrium, in the whole observed range of the frequencies of the physical synchronizers of the production. Resilience time estimates suggest that microphytobenthic biomass attains an equilibrium rapidly, even after a strong perturbation. Around the equilibrium, the local model solutions agree fairly with the in situ observed dynamics of the total biomass. The sensitivity analysis suggests investigating the processes governing biomass losses, which are so far uncertain, and may further vary in space and time. (C) 2000 Elsevier Science Ltd.

Continental Shelf Research↗

USGS2002

Prediction of the fate of p,p'-DDE in sediment on the Palos Verdes shelf, California, USA

Long-term (60-yr) predictions of vertical profiles of p,p???-DDE concentrations in contaminated bottom sediments on the Palos Verdes shelf were calculated for three locations along the 60-m isobath using a numerical solution of the one-dimensional advection-diffusion equation. The calculations incorporated the following processes: sediment deposition (or erosion), depth-dependent solid-phase biodiffusive mixing, in situ diagenetic transformation, and loss of p,p???-DDE across the sediment-water interface by two mechanisms (resuspension of sediments by wave action and subsequent loss of p,p???-DDE to the water column by desorption, and desorption from sediments to porewater and subsequent molecular diffusion to the water column). A combination of field measurements, laboratory analyses, and calculations with supporting models was used to set parameters for the model. The model explains significant features observed in measurements made every 2 years from 1981 to 1997 by the County Sanitation Districts of Los Angeles (LACSD). Analyses of available data suggest that two sites northwest of the Whites Point sewage outfalls will remain depositional, even as particulate supply from the sewage-treatment plant and nearby Portuguese Bend Landslide decreases. At these sites, model predictions for 1991-2050 indicate that most of the existing inventory of p,p???-DDE will remain buried and that surface concentrations will gradually decrease. Analyses of data southeast of the outfalls suggest that erosion is likely to occur somewhere on the southeast edge of the existing effluent-affected deposit, and model predictions for such a site showed that erosion and biodiffusion will reintroduce the p,p???-DDE to the upper layer of sediments, with subsequent increases in surface concentrations and loss to the overlying water column.

California↗

USGS2003

Experimental and textural constraints on mafic enclave formation in volcanic rocks

We have used experiments and textural analysis to investigate the process of enclave formation during magma mixing at Southwest Trident volcano, Alaska. Andesite enclaves are present throughout the four dacite lava flows produced by the eruption, and resemble mafic enclaves commonly found in other volcanic rocks. Our experiments replicate the pressure–temperature–time path taken by enclave-forming andesite magma as it is engulfed in dacite during magma mixing. Pressure and temperature information for the andesite and dacite are from [Coombs et al., Contrib. Mineral. Petrol. 140 (2000) 99–118]. The andesite was annealed at 1000°C, and then cooled to 890°C at rates of 110°C h −1 , 10°C h −1 , and 2°C h −1 . Once cooled to 890°C, andesite was held at this lower temperature from times ranging from 1 to 40 h. The andesite that was cooled at the slower rates of 2°C h −1 and 10°C h −1 most resembles enclave groundmass texturally and compositionally. Based on simple thermal calculations, these rates are more consistent with cooling of the andesite groundmass below an andesite–dacite interface than with cooling of enclave-sized spheres. If enclaves do crystallize as spheres, post-crystallization disaggregation must occur. Calculations using the MELTS algorithm [Ghiorso and Sack, Contrib. Mineral. Petrol. 119 (1995) 197–212] show that for incoming andesite to become less dense than the dacite ∼34 volume % of its groundmass must crystallize to undergo ∼18 volume % vesiculation; these values are similar to those determined for Southwest Trident enclaves. Thus such crystallization may lead to ‘flotation’ of enclaves and be a viable mechanism for enclave formation and dispersal. The residual melt in the cooling experiments did not evolve to rhyolitic compositions such as seen in natural enclaves due to a lack of a decompression step in the experiments. Decompression experiments on Southwest Trident dacite suggest an average ascent rate for the eruption of ∼2–3 MPa h −1 . An andesite experiment that was cooled and then decompressed at this rate contains melt that matches that of the natural enclaves. It is apparent that decompression (ascent)-induced crystallization occurs in enclaves, but not in the form of microlites as happens in the dacite host, due either to insufficient residence time at chamber temperatures or to the pre-existing microphenocrysts which act as sites for new growth.

Alaska↗

USGS1996

Mobility of 2,2',5,5'-tetrachlorobiphenyl in model systems containing bottom sediments and water from the lower Fox River, Wisconsin

Sediment-water partitioning and diffusive transport of 2,2’,5,5’-tetrachlorobiphenyl, PCB congener IUPAC #52 (TCB52) were examined in laboratory experiments with sediments from two sites in the lower Fox River, Wisconsin. Native water was pumped at controlled flow rates through cells containing sediments amended with a known activity of carbon-14-labeled TCB52. Concentrations of TCB52 in water and sediments were determined by liquid scintillation measurements of carbon-14 activity. Sediment-water partitioning was independent of flow rate for rates up to 8 m/d. Distribution coefficients (K d ) and soil-sorption coefficients (K oc ) were found to be at maximum levels 5–10 cm below the surface, despite an absence of significant variation in the fraction of organic carbon (f oc ) through the same profile. Other factors, such as the effects of colloids and microbial activity in the sediments, are likely to be important in controlling the PCB distribution. Log K d and log K oc ranges were 4.1–4.9 and 5.3–6.1, respectively, and calculated effective diffusivities at the sediment-water interface ranged from 3 to 8 × 10 −10 cm 2 /s. Gradual increases with time in TCB52 concentrations in the water phase, possibly due to effects of microbial activity, were observed. Diffusion experiments and models showed that the TCB52 migration rate within the sediment column is 8-9 mm/yr.

Journal of Great Lakes Research↗

USGS2002

A census of marine life: Unknowable or just unknown?

As an introduction to the entire volume, this article outlines the relationships among the five elements of the Census of Marine Life (CoML) that create new knowledge: (1) The Ocean Biogeographic Information System (OBIS), a marine component of the Global Biodiversity Information Facility, links marine databases around the world to provide an Internet accessible, dynamic interface for comparing species-level, geo-referenced biodiversity data in relation to ocean habitats. The entire CoML field project data will be managed in and accessible through OBIS. (2) The History of Marine Animal Populations (HMAP) is a unique new synthesis of historical and biological research that will document marine biodiversity, globally, up to 500 years ago, before significant human impact, and store it in formats compatible with modern data in OBIS. (3) The Scientific Committee on Oceanic Research Working Group 118 monitors and recommends advanced marine technologies, ready to be routinely used in CoML field projects. (4) CoML Initial Field Projects develop and calibrate these technologies in selected regions to facilitate and accelerate global biodiversity research. As calibrated technologies and protocols are adopted in many regions, qualitative and quantitative biodiversity discoveries accumulate. (5) The Future of Marine Animal Populations (FMAP) program will insure that the data in OBIS are suitable for modeling and predicting changes in global biodiversity in response to fishing, pollution, and climate change challenges. It will make datasets available for hindcasting and forecasting analyses linked to physical ocean observations and assist in documenting the impacts of conservation efforts on sustainability.

Oceanologica Acta↗

USGS2002

A pitfall in shallow shear-wave refraction surveying

The shallow shear-wave refraction method works successfully in an area with a series of horizontal layers. However, complex near-surface geology may not fit into the assumption of a series of horizontal layers. That a plane SH-wave undergoes wave-type conversion along an interface in an area of nonhorizontal layers is theoretically inevitable. One real example shows that the shallow shear-wave refraction method provides velocities of a converted wave rather than an SH- wave. Moreover, it is impossible to identify the converted wave by refraction data itself. As most geophysical engineering firms have limited resources, an additional P-wave refraction survey is necessary to verify if velocities calculated from a shear-wave refraction survey are velocities of converted waves. The alternative at this time may be the surface wave method, which can provide reliable S-wave velocities, even in an area of velocity inversion (a higher velocity layer underlain by a lower velocity layer). ?? 2002 Elsevier Science B.V. All rights reserved.

Journal of Applied Geophysics↗

USGS2008

GSTARS computer models and their applications, part I: theoretical development

GSTARS is a series of computer models developed by the U.S. Bureau of Reclamation for alluvial river and reservoir sedimentation studies while the authors were employed by that agency. The first version of GSTARS was released in 1986 using Fortran IV for mainframe computers. GSTARS 2.0 was released in 1998 for personal computer application with most of the code in the original GSTARS revised, improved, and expanded using Fortran IV/77. GSTARS 2.1 is an improved and revised GSTARS 2.0 with graphical user interface. The unique features of all GSTARS models are the conjunctive use of the stream tube concept and of the minimum stream power theory. The application of minimum stream power theory allows the determination of optimum channel geometry with variable channel width and cross-sectional shape. The use of the stream tube concept enables the simulation of river hydraulics using one-dimensional numerical solutions to obtain a semi-two- dimensional presentation of the hydraulic conditions along and across an alluvial channel. According to the stream tube concept, no water or sediment particles can cross the walls of stream tubes, which is valid for many natural rivers. At and near sharp bends, however, sediment particles may cross the boundaries of stream tubes. GSTARS3, based on FORTRAN 90/95, addresses this phenomenon and further expands the capabilities of GSTARS 2.1 for cohesive and non-cohesive sediment transport in rivers and reservoirs. This paper presents the concepts, methods, and techniques used to develop the GSTARS series of computer models, especially GSTARS3. ?? 2008 International Research and Training Centre on Erosion and Sedimentation and the World Association for Sedimentation and Erosion Research.

International Journal of Sediment Research↗

USGS2001

An analytical solution for transient flow of Bingham viscoplastic materials in rock fractures

We present below an analytical solution to model the one-dimensional transient flow of a Bingham viscoplastic material in a fracture with parallel walls (smooth or rough) that is subjected to an applied pressure gradient. The solution models the acceleration and the deceleration of the material as the pressure gradient changes with time. Two cases are considered: A pressure gradient applied over a finite time interval and an applied pressure gradient that is constant over time. The solution is expressed in dimensionless form and can therefore be used for a wide range of Bingham viscoplastic materials. The solution is also capable of capturing the transition that takes place in a fracture between viscoplastic flow and rigid plug flow. Also, it shows the development of a rigid central layer in fractures, the extent of which depends on the fluid properties (viscosity and yield stress), the magnitude of the pressure gradient, and the fracture aperture and surface roughness. Finally, it is shown that when a pressure gradient is applied and kept constant, the solution for the fracture flow rate converges over time to a steady-state solution that can be defined as a modified cubic law. In this case, the fracture transmissivity is found to be a non-linear function of the head gradient. This solution provides a tool for a better understanding of the flow of Bingham materials in rock fractures, interfaces, and cracks. ?? 2001 Elsevier Science Ltd. All rights reserved.

International Journal of Rock Mechanics and Mining↗

USGS2002

Accelerated solvent extraction followed by on-line solid-phase extraction coupled to ion trap LC/MS/MS for analysis of benzalkonium chlorides in sediment samples

Benzalkonium chlorides (BACs) were successfully extracted from sediment samples using a new methodology based on accelerated solvent extraction (ASE) followed by an on-line cleanup step. The BACs were detected by liquid chromatography/ion trap mass spectrometry (LC/MS) or tandem mass spectrometry (MS/MS) using an electrospray interface operated in the positive ion mode. This methodology combines the high efficiency of extraction provided by a pressurized fluid and the high sensitivity offered by the ion trap MS/MS. The effects of solvent type and ASE operational variables, such as temperature and pressure, were evaluated. After optimization, a mixture of acetonitrile/water (6:4 or 7:3) was found to be most efficient for extracting BACs from the sediment samples. Extraction recoveries ranged from 95 to 105% for C12 and C14 homologues, respectively. Total method recoveries from fortified sediment samples, using a cleanup step followed by ASE, were 85% for C12BAC and 79% for C14-BAC. The methodology developed in this work provides detection limits in the subnanogram per gram range. Concentrations of BAC homologues ranged from 22 to 206 ??g/kg in sediment samples from different river sites downstream from wastewater treatment plants. The high affinity of BACs for soil suggests that BACs preferentially concentrate in sediment rather than in water.

Analytical Chemistry↗