SEARCH · Search USGS

Results for “Human Organization”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

SourceResearch connectionFrom yearThrough year

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 829 records · Page 46Linked to original sources

USGS2007

Anthropogenic Organic Compounds in Ground Water and Finished Water of Community Water Systems in the Northern Tampa Bay Area, Florida, 2002-04

As part of the U.S. Geological Survey's (USGS's) National Water-Quality Assessment (NAWQA) Program, a Source Water-Quality Assessment (SWQA) was conducted in the unconfined and semiconfined portions of the Upper Floridan aquifer system during 2002-04. SWQAs are two-phased sampling activities, wherein phase 1 was designed to evaluate the occurrence of 258 anthropogenic organic compounds (AOCs) in ground water used as source water for 30 of the largest-producing community water system (CWS) wells in the northern Tampa Bay area, Florida. The 258 AOCs included volatile organic compounds (VOCs), pesticides, and other anthropogenic organic compounds (OAOCs). Phase 2 was designed to monitor concentrations in the source water and also the finished water of CWSs for compounds most frequently detected during phase 1. During phase 1 of the SWQA study, 31 of the 258 AOCs were detected in source-water samples collected from CWS wells at low concentrations (less than 1.0 microgram per liter (ug/L)). Twelve AOCs were detected in at least 10 percent of samples. Concentrations from 16 of the 31 detected AOCs were about 2 to 5 orders of magnitude below human-health benchmarks indicating that concentrations were unlikely to be of potential human-health concern. The potential human-health relevance for the remaining 15 detected unregulated AOCs could not be evaluated because no human-health benchmarks were available for these compounds. Hydrogeology, population, and land use were examined to evaluate the effects of these variables on the source water monitored. Approximately three times as many detections of VOCs (27) and pesticides (34) occurred in unconfined areas than in the semiconfined areas (8 VOCs, 14 pesticides). In contrast, 1 OAOC was detected in unconfined areas, and 13 OAOCs were detected in semiconfined areas with 9 of the OAOC detections occurring in samples from two wells located near septic systems. Analyses of population and land use indicated that the number of compounds detected increased as the population surrounding each well increased. Detection frequencies and concentrations for VOCs (particularly chloroform) and pesticides were highest in residential land-use areas. The results of source-water samples from the 30 CWS wells monitored during phase 1 of this SWQA study were compared to four locally conducted studies. These general comparisons indicate that the occurrence of VOCs in other studies is similar to their occurrence in source water of CWSs monitored as part of this SWQA. However, pesticide compounds, especially atrazine and its breakdown products, occurred more frequently in the SWQA study than in the other four studies. Phase 2 of the SWQA assessed AOCs in samples from 11 of the 30 CWS wells and the associated finished water. Overall, 42 AOCs were detected in either source water or finished water and more compounds were detected in finished water than in source water. Specifically, 22 individual AOCs were detected in source water and 27 AOCs were detected in finished water. The total number of detections was greater in the finished water (80) than in the source water (49); however, this was largely due to the creation of disinfection by-products (DBPs) during water treatment. Excluding DBPs, about the same number of total detections was observed in source water (40) and finished water (44). During phase 2, AOC detected concentrations ranged from E0.003 (estimated) to 1,140 ug/L in the source water and from E0.003 to 36.3 ug/L in the finished water. Concentrations of 24 of the 42 compounds were compared to human-health benchmarks and were about 1 to 5 orders of magnitude below their human-health benchmarks indicating that concentrations are unlikely to be of potential human-health concern, excluding DBPs. Concentrations of carbon tetrachloride, however, were within 10 percent of its human-health benchmark, which is considered a level that may warrant inclusion of the compound in a low-concentration, t

Scientific Investigations Report↗

USGS2012

Concentration, distribution, and translocation of mercury and methylmercury in mine-waste, sediment, soil, water, and fish collected near the Abbadia San Salvatore mercury mine, Monte Amiata district, Italy

The distribution and translocation of mercury (Hg) was studied in the Paglia River ecosystem, located downstream from the inactive Abbadia San Salvatore mine (ASSM). The ASSM is part of the Monte Amiata Hg district, Southern Tuscany, Italy, which was one of the world’s largest Hg districts. Concentrations of Hg and methyl-Hg were determined in mine-waste calcine (retorted ore), sediment, water, soil, and freshwater fish collected from the ASSM and the downstream Paglia River. Concentrations of Hg in calcine samples ranged from 25 to 1500 μg/g, all of which exceeded the industrial soil contamination level for Hg of 5 μg/g used in Italy. Stream and lake sediment samples collected downstream from the ASSM ranged in Hg concentration from 0.26 to 15 μg/g, of which more than 50% exceeded the probable effect concentration for Hg of 1.06 μg/g, the concentration above which harmful effects are likely to be observed in sediment-dwelling organisms. Stream and lake sediment methyl-Hg concentrations showed a significant correlation with TOC indicating considerable methylation and potential bioavailability of Hg. Stream water contained Hg as high as 1400 ng/L, but only one water sample exceeded the 1000 ng/L drinking water Hg standard used in Italy. Concentrations of Hg were elevated in freshwater fish muscle samples and ranged from 0.16 to 1.2 μg/g (wet weight), averaged 0.84 μg/g, and 96% of these exceeded the 0.3 μg/g (methyl-Hg, wet weight) USEPA fish muscle standard recommended to protect human health. Analysis of fish muscle for methyl-Hg confirmed that > 90% of the Hg in these fish is methyl-Hg. Such highly elevated Hg concentrations in fish indicated active methylation, significant bioavailability, and uptake of Hg by fish in the Paglia River ecosystem. Methyl-Hg is highly toxic and the high Hg concentrations in these fish represent a potential pathway of Hg to the human food chain.

Monte Amiata↗

USGS2005

Parking lot sealcoat: a major source of polycyclic aromatic hydrocarbons (PAHs) in urban and suburban environments

Collaborative studies by the City of Austin and the U. S. Geological Survey (USGS) have identified coal-tar based sealcoat—the black, shiny emulsion painted or sprayed on asphalt pavement such as parking lots—as a major and previously unrecognized source of polycyclic aromatic hydrocarbon (PAH) contamination. Several PAHs are suspected human carcinogens and are toxic to aquatic life. Studies in Austin, Texas, showed that particles in runoff from coal-tar based sealcoated parking lots had concentrations of PAHs that were about 65 times higher than concentrations in particles washed off parking lots that had not been sealcoated. Biological studies, conducted by the City of Austin in the field and in the laboratory, indicated that PAH levels in sediment contaminated with abraded sealcoat were toxic to aquatic life and were degrading aquatic communities, as indicated by loss of species and decreased numbers of organisms. Identification of this source of PAHs may help to improve future strategies for controlling these compounds in urban water bodies across the Nation where parking lot sealcoat is used.

Fact Sheet↗

USGS2009

The Ecology of Parasite-Host Interactions at Montezuma Well National Monument, Arizona - Appreciating the Importance of Parasites

Although parasites play important ecological roles through the direct interactions they have with their hosts, historically that fact has been underappreciated. Today, scientists have a growing appreciation of the scope of such impacts. Parasites have been reported to dominate food webs, alter predator-prey relationships, act as ecosystem engineers, and alter community structure. In spite of this growing awareness in the scientific community, parasites are still often neglected in the consideration of the management and conservation of resources and ecosystems. Given that at least half of the organisms on earth are probably parasitic, it should be evident that the ecological functions of parasites warrant greater attention. In this report, we explore different aspects of parasite-host relationships found at a desert spring pond within Montezuma Well National Monument, Arizona. In three separate but related chapters, we explore interactions between a novel amphipod host and two parasites. First, we identify how host behavior responds to this association and how this association affects interactions with both invertebrate non-host predators and a vertebrate host predator. Second, we look at the human dimension, investigating how human recreation can indirectly affect patterns of disease by altering patterns of vertebrate host space use. Finally - because parasites and diseases are of increasing importance in the management of wildlife species, especially those that are imperiled or of management concern - the third chapter argues that research would benefit from increased attention to the statistical analysis of wildlife disease studies. This report also explores issues of statistical parasitology, providing information that may better inform those designing research projects and analyzing data from studies of wildlife disease. In investigating the nature of parasite-host interactions, the role that relationships play in ecological communities, and how human activities alter these associations, scientists usually make inferences by methods of statistical hypotheses testing. This type of hypothesis testing places additional importance on the analysis and interpretation of parasite-host interactions. We address these ideas in this report, focusing on the following questions: (1) How do two parasites with complex life cycles alter the behavior of a novel amphipod host, and how do host and non-host predators respond to infected amphipod prey? (2) Does human recreation affect spatial patterns of infection in an otherwise natural ecosystem? (3) How is hypothesis-testing applied in studies of wildlife disease? (4) What conclusions can we make about the relative usefulness of these methodologies? and (5) How can the analysis and interpretation of wildlife disease studies be improved? Each chapter of this report contains its own literature-cited section, with tables included in appendixes at the end of the full report.

Open-File Report↗

USGS2012

National assessment of shoreline change: Historical shoreline change in the Hawaiian Islands

Sandy beaches of the United States are some of the most popular tourist and recreational destinations. Coastal property constitutes some of the most valuable real estate in the country. Beaches are an ephemeral environment between water and land with unique and fragile natural ecosystems that have evolved in equilibrium with the ever-changing winds, waves, and water levels. Beachfront lands are the site of intense residential and commercial development even though they are highly vulnerable to several natural hazards, including marine inundation, flooding and drainage problems, effects of storms, sea-level rise, and coastal erosion. Because the U.S. population continues to shift toward the coast where valuable coastal property is vulnerable to erosion, the U.S. Geological Survey (USGS) is conducting a national assessment of coastal change. One aspect of this effort, the National Assessment of Shoreline Change, uses shoreline position as a proxy for coastal change because shoreline position is one of the most commonly monitored indicators of environmental change (for example, Fletcher, 1992; Dolan and others, 1991; Douglas and others, 1998; Galgano and others, 1998). Additionally, the National Research Council (1990) recommended the use of historical shoreline analysis in the absence of a widely accepted model of shoreline change. A principal purpose of the USGS shoreline change research is to develop a common methodology so that shoreline change analyses for the continental U.S., portions of Hawaii, and Alaska can be updated periodically in a consistent and systematic manner. The primary objectives of this study were to (1) develop and implement improved methods of assessing and monitoring shoreline movement, and (2) improve current understanding of the processes controlling shoreline movement. Achieving these ongoing long-term objectives requires research that (1) examines the original sources of shoreline data (for example, maps, air photos, global positioning system (GPS), Light Detection and Ranging (lidar)); (2) evaluates the utility of different shoreline proxies (for example, geomorphic feature, water mark, tidal datum, elevation), including the errors associated with each; (3) investigates bias and potential errors associated with integrating different shoreline proxies from different sources; (4) develops standard, uniform methods of shoreline change analysis; (5) examines the effects of human activities on shoreline movement and rates of change; and (6) investigates alternative mathematical methods for calculating historical rates of change and uncertainties associated with them. This report summarizes historical shoreline changes on the three most densely populated islands of the eight main Hawaiian Islands: Kauai, Oahu, and Maui. The report emphasizes the hazard from “chronic” (decades to centuries) erosion at regional scales and strives to relate this hazard to the body of knowledge regarding coastal geology of Hawaii because of its potential impact on natural resources, the economy, and society. Results are organized by coastal regions (island side) and sub-regions (common littoral characteristics). This report of Hawaii coasts is part of a series of reports that include text summarizing methods, results, and implications of the results. In addition, geographic information system (GIS) data used in the analyses are made available for download (Romine and others, 2012). The rates of shoreline change and products presented in this report are not intended for site-specific analysis of shoreline movement, nor are they intended to replace any official source of shoreline change information identified by local or State government agencies, or other Federal entities that are used for regulatory purposes. Rates of shoreline change presented herein may differ from other published rates, and differences do not necessarily indicate that the other rates are inaccurate. Some discrepancies are to be expected, considering the many possible ways of determining shoreline positions and rates of change, and the inherent uncertainty in calculating these rates. Rates of shoreline change presented in this report represent shoreline movement under past conditions and are not intended for use in predicting future shoreline positions or future rates of shoreline change.

Hawai'i↗

USGS2019

Analysis of groundwater response to tidal fluctuations, Operable Unit 1, Naval Base Kitsap, Keyport, Washington

Chlorinated volatile organic compounds have affected groundwater beneath a former 9-acre landfill at Operable Unit 1 (OU 1) of Naval Base Kitsap (NBK) Keyport, in Keyport, Washington. The landfill was the primary disposal area for domestic and industrial waste generated by NBK Keyport from the 1930s through 1973. Naval Facilities Engineering Command Northwest, in conjunction with the Environmental Protection Agency, Washington State Department of Ecology, and the Suquamish Tribe, is charged with collecting necessary data to monitor the contamination left in place and to ensure that the site does not pose a risk to human health or the environment. To support these efforts, refined information was collected on how groundwater levels throughout OU 1 respond to tidal fluctuations at this nearshore site adjacent to Liberty Bay, an inlet of Puget Sound. The information was analyzed to determine the optimal times during the semidiurnal and the neap-spring tidal cycles to sample groundwater for contaminants associated with fresh groundwater originating from OU 1. The optimal times for sampling are presumed to be when fresh groundwater flowing seaward is least impeded by elevated tides, and those times are related to predicted tide levels by tidal lags, the durations between low tides, and corresponding low groundwater levels. Discrete groundwater-specific conductance data also were collected to determine if a seawater/freshwater interface was present at any of the monitoring wells, and to inform decisions on the depth at which groundwater should be sampled in existing wells. Groundwater and surface-water levels were monitored at 19 monitoring wells and five adjacent surface-water sites. Specific conductance was monitored in each surface-water site. All time-series data parameters were collected every 15 minutes during a 4-week duration to measure how nearshore groundwater responds to tidal forcing. Time-series data were collected from July 12, 2018, to August 8, 2018, a period that included neap and spring tides. Vertical water-quality profiles were measured once in the screened interval of nine selected monitoring wells. The profiles included measurements at the top, middle, and bottom of each saturated screen interval. Tidal lag times were determined relative to tidal levels in Liberty Bay (rather than in the more nearby Tide Flats) because the predicted tides for the Poulsbo, Washington Station (National Oceanic and Atmospheric Administration [NOAA] Station 9445719) that are used to schedule groundwater sampling represent open-water conditions in the area; a sill that separates Dogfish Bay from the Tide Flats clearly affects the timing and magnitude of low-low tides in the Tide Flats. Calculated tidal lag times were divided into three general groups: (1) wells where groundwater responded to tidal level changes immediately, (2) wells where groundwater responded to tidal level changes within about 2–5 hours, and (3) wells where groundwater had minimal response to tidal level changes. Groundwater levels in the middle group of wells primarily responded in concert with tidal level changes in the Tide Flats rather than tidal level changes in Liberty Bay. An intended sampling depth refinement based on an assessment of transient seawater intrusion was not completed because of a failure to collect specific-conductance time-series data in select wells. Instead, discrete specific-conductance data from this and prior studies were evaluated to determine that the midpoint of well screens in OU 1 wells can be assumed to be a reasonably representative of undiluted groundwater. When sampling during spring (rather than neap) tides (as has generally been the standard practice at OU 1), the optimal time to sample the monitoring wells influenced by tides would be to add the tidal lags presented in this report to the time of the predicted low-low tide for Liberty Bay as measured at NOAA Station 9445719 at Poulsbo, Washington. Sampling schedules for the six wells where groundwater levels were only minimally influenced by tide changes should not be constrained by tidal conditions.

Washington↗

USGS2016

Ambient water quality in aquifers used for drinking-water supplies, Gem County, southwestern Idaho, 2015

In recent years, the rapid population growth in Gem County, Idaho, has been similar to other counties in southwestern Idaho, increasing about 54 percent from 1990 to 2015. Because the entire population of the study area depends on groundwater for drinking water supply (either from self-supplied domestic, community, or municipal-supply wells), this population growth, along with changes in land use (including potential petroleum exploration and development), indicated to the public and local officials the need to assess the quality of groundwater used for human consumption. To this end, the U.S. Geological Survey, in cooperation with Gem County and the Idaho Department of Environmental Quality, assessed the quality of groundwater from freshwater aquifers used for domestic supply in Gem County. A total of 47 domestic or municipal wells, 1 spring, and 2 surface-water sites on the Payette River were sampled during September 8–November 19, 2015. The sampled water was analyzed for a variety of constituents, including major ions, trace elements, nutrients, bacteria, radionuclides, dissolved gasses, stable isotopes of water and methane, and either volatile organic compounds (VOCs) or pesticides. To better understand analytical results, a conceptual hydrogeologic framework was developed in which three hydrogeologic units were described: Quaternary-Tertiary deposits (QTd), Tertiary Idaho Group rocks (Tig), and Tertiary-Cretaceous igneous rocks (TKi). Water levels were measured in 30 wells during sampling, and a groundwater-level altitude map was constructed for the QTd and Tig units showing groundwater flow toward the Emmett Valley and Payette River. Analytical results indicate that groundwater in Gem County is generally of good quality. Samples collected from two wells contained water with fluoride concentrations greater than the U.S. Environmental Protection Agency (EPA) Maximum Contaminant Level (MCL) of 4 milligrams per liter (mg/L), six wells contained arsenic at concentrations greater than the EPA MCL of 10 micrograms per liter, and a sample from one well exceeded the MCL of 15 picocuries per liter for alpha particles. Although previous samples collected from some wells in Gem County contained nitrate concentrations greater than the MCL of 10 mg/L, the largest concentration detected in the current study was 5.2 mg/L. Total coliform bacteria was detected in four groundwater samples. Three volatile organic compounds (VOCs) were detected in samples collected from five wells, and five compounds of the triazine class of herbicides were detected in samples from five wells; no concentrations were greater than applicable EPA MCLs. Methane was detected in samples from 36 wells, with the concentration in 1 well large enough to be considered an explosion hazard by U.S. Office of Surface Mining guidelines. Stable isotope signatures of methane in six samples suggest that naturally occurring methane in Gem County is probably of both thermogenic and biogenic origin.

Idaho↗

USGS2012

Nature's Notebook 2011: Data & participant summary

Introduction The USA National Phenology Network The USA National Phenology Network (USA‐NPN; www.usanpn.org) seeks to engage a diverse range of citizen scientist volunteers, federal, state, and non‐governmental organizations, educators and professional research scientists to collect phenological observations of plants and animals using consistent standards and to contribute their observations to a national data repository. To guide this effort, the USA‐NPN National Coordinating Office (NCO), based in Tucson, Arizona, implemented an online monitoring program for plants and animals, Nature's Notebook , and has developed phenology monitoring protocols and an information management system, which includes the National Phenology Database (NPDb). We are developing a diversity of materials, tools, techniques, and protocols to assist decision making and education related to ecology, wildlife, human health, ecosystem services, natural resource management, biological conservation, and climate change adaptation.

USA-NPN Technical Series↗

USGS1985

Effects of contaminants on toxicity of the lampricides TFM and Bayer 73 to three species of fish

Waters in the Great Lakes basin contain more than 400 contaminant chemicals that potentially affect fishery resources, commerce, and human inhabitants. We determined in the laboratory the effects of selected contaminants on the toxicity of the widely used lampricides TFM (3-trifluoromethyl-4-nitrophenol) and Bayer 73 (2′,5-dichloro-4′-nitrosalicylanilide) to three species of fish—rainbow trout ( Salmo gairdneri ), white sucker ( Catostomus commersoni ), and fathead minnow ( Pimephales promelas ). The fish were exposed to paired mixtures of lampricides and selected contaminants in standardized, acute static toxicity tests to determine the resulting type of response—less than additive, additive, or greater than additive (synergistic). As expected, the toxicities of combinations of lampricides with organic pesticides, metal, industrial or municipal pollutants, and tannic acid were mostly additive. However, the toxicity of a combination of TFM, Delnav, and malathion was synergistic, and extremely small quantities of each chemical became lethal when mixed. The concentration that produced 50% mortality was 1.64 mg/L for TFM alone but only 0.041 mg/L for TFM with the pesticides. Toxicities of the pesticides in the combination also increased commensurately. The triple combination of chemicals produced extraordinary synergism and effectively demonstrated the hazards that may result if certain chemical combinations occur in the aquatic environment. However, synergism is not the only kind of toxic action that produces hazards to aquatic organisms. All three types of toxic action are of concern because toxic units produced by contaminant chemicals add to the toxic units of applied management chemicals. Since the toxicity of the majority of chemical combinations is simply additive, this cumulative toxic action contributes more total units to aquatic environments than the extreme actions of less than additive and synergism. The toxicity of the lampricide TFM, as well as other management chemicals, is reinforced by the presence of any contaminant that contributes additional units of toxicity. Therefore, all types of cumulative toxic action should be of concern to people and agencies involved with protecting the environment.

Journal of Great Lakes Research↗

USGS2006

A Reconnaissance for Emerging Contaminants in the South Branch Potomac River, Cacapon River, and Williams River Basins, West Virginia, April-October 2004

In 2003 a team of scientists from West Virginia Division of Natural Resources and the U. S. Geological Survey found a high incidence of an intersex condition, oocytes in the testes, among smallmouth bass (Micropterus dolomieu) in the South Branch Potomac River and the Cacapon River of West Virginia, indicating the possible presence of endocrine-disrupting compounds (EDCs). Possible sources of EDCs include municipal and domestic wastewater, and agricultural and industrial activities. Several sampling strategies were used to identify emerging contaminants, including potential EDCs, and their possible sources in these river basins and at an out-of-basin reference site. Passive water-sampling devices, which accumulate in-stream organic chemical compounds, were deployed for 40-41 days at 8 sampling sites. Sampler extracts were analyzed for a broad range of polar and non-polar organic compounds including pesticides, flame retardants, pharmaceuticals, and personal-care products. Analysis of passive-sampler extracts found 4 compounds; hexachloro-benzene; pentachloroanisole; 2,2',4,4',5-penta-bromo-diphenyl ether (BDE 47); and 2,2',4,4',6-penta-bromo-diphenyl ether (BDE 99) to be present at every sampled site, including the reference site, and several sites had detectable quantities of other compounds. No detectable quantity of any antibiotics was found in any passive-sampler extract. Effluent samples were analyzed for 39 antibiotics as tracers of human and agricultural waste. Additionally, poultry-processing plant effluent was sampled for roxarsone, an organoarsenic compound used as a poultry-feed additive, and other arsenic species as tracers of poultry waste. Antibiotics were detected in municipal wastewater, aquaculture, and poultry-processing effluent, with the highest number of antibiotics and the greatest concentrations found in municipal effluent. Arsenate was the only arsenic species detected in the poultry-processing plant effluent, at a concentration of 1.0 ?g/L. Water samples were collected from 7 stream sites and analyzed for arsenic species, including roxarsone. Arsenate was detected in samples from 6 of the 7 stream samples, in concentrations ranging from 0.3 to 0.5 ?g/L. Additionally, the analysis of smallmouth bass blood plasma for potential EDCs indicated the presence of several compounds including some found in the passive sampler extracts, specifically BDE 47 and BDE 99. Data from this reconnaissance will help to focus efforts for further studies of the occurrence of emerging contaminants, EDCs, and intersex in smallmouth bass in these Potomac River tributaries.

Open-File Report↗

USGS2007

USGS: Science to understand and forecast change in coastal ecosystems

The multidisciplinary approach of the US Geological Survey (USGS), a principal science agency of the US Department of the Interior (DOI), to address the complex and cumulative impacts of human activities and natural events on the US coastal ecosystems has been considered remarkable for understanding and forecasting the changes. The USGS helps explain geologic, hydrologic, and biologic systems and their connectivity across landscapes and seascapes along the coastline. The USGS coastal science programs effectively address science and information to other scientists, managers, policy makers, and the public. The USGS provides scientific expertise, capabilities, and services to collaborative federal, regional, and state-led efforts, which are in line with the goals of Ocean Action Plan (OAP) and Ocean Research Priorities Plan (ORPP). The organization is a leader in understanding terrestrial and marine environmental hazards such as earthquakes, tsunamis, floods, and landslides and assessing and forecasting coastal impacts using various specialized visualization techniques.

Sea Technology↗

USGS2015

Applications of optical sensors for high-frequency water-quality monitoring and research

The recent commercial availability of in-situ optical sensors, together with new techniques for data collection and analysis, provides the opportunity to monitor a wide range of water-quality constituents over time scales during which environmental conditions actually change. Traditional approaches for data collection (daily to monthly discrete samples) are often limited by high sample collection, processing, and analytical costs, difficult site access, and logistical challenges, particularly for long-term sampling at a large number of sites. Optical sensors that continuously measure constituents in the environment by absorbance or fluorescence properties (Figure 1) have had a long history of use in oceanography for measuring highly resolved concentrations and fluxes of organic matter, nutrients, and algal material. However, much of the work using commercially-available optical sensors in rivers and streams has taken place in only the last few years. Figure 1. [NOT SHOWN] Optical sensor technology is now sufficiently developed to warrant broader application for research and monitoring in coastal and freshwater systems, and the United States Geological Survey (a U.S. science agency) is now using these sensors in a variety of research and monitoring programs to better understand water quality in-situ and in real-time. Examples are numerous and range from the applications of nitrate sensors for calculating loads to estuaries susceptible to hypoxia (Pellerin et al., 2014) to the use of fluorometers to estimate methymercury fluxes (Bergamaschi et al., 2011) and disinfection byproduct formation (Carpenter et al., 2013). Transmitting these data in real-time provides information that can be used for early trend detection, help identify monitoring gaps critical for water management, and provide science-based decision support across a range of issues related to water quality, freshwater ecosystems, and human health. Despite the value of these sensors, collecting data that meet high-quality standards requires investment in and adherence to tested and established methods and protocols for sensor operation and data management (Pellerin et al., 2013). For example, optical sensor measurements can be strongly influenced by a variety of matrix effects, including water temperature, inner filtering from highly colored water, and scattering of light by suspended particles (Downing et al., 2012). Characterizing and correcting sensors for these effects – as well as the continued development of common methodologies and protocols for sensor use – will be critical to ensuring comparable measurements across sites and over time. In addition, collaborative efforts such as the Nutrient Sensor Challenge (www.nutrients-challenge.org) will continue to accelerate the development, production and use of affordable, reliable and accurate sensors for a range of environments. REFERENCES Bergamaschi .B.A., Fleck J.A., Downing B.D., Boss E., Pellerin B.A., Ganju N.K., Schoellhamer D.H., Byington A.A., Heim W.A., Stephenson M., Fujii R. (2011), Methyl mercury dynamics in a tidal wetland quantified using in situ optical measurements. Limnology and Oceanography, 56(4): 1355-1371. Carpenter K.D., Kraus T.E.C., Goldman J.H., Saraceno J., Downing B.D., Bergamaschi B.A., McGhee G., Triplett T. (2013), Sources and Characteristics of Organic Matter in the Clackamas River, Oregon, Related to the Formation of Disinfection By-products in Treated Drinking Water: U.S. Geological Survey Scientific Investigations Report 2013–5001, 78 p. Downing .B.D., Pellerin B.A., Bergamaschi B.A., Saraceno J., Kraus T.E.K. (2012), Seeing the light: The effects of particles, temperature and inner filtering on in situ CDOM fluorescence in rivers and streams. Limnology and Oceanography: Methods, 10: 767-775. Pellerin B.A., Bergamaschi B.A., Downing B.D., Saraceno J., Garrett J.D., Olsen L.D. (2013), Optical Techniques for the Determination of Nitrate in En

Conference Paper↗

USGS2013

Association of toxin-producing Clostridium botulinum with the macroalga Cladophora in the Great Lakes

Avian botulism, a paralytic disease of birds, often occurs on a yearly cycle and is increasingly becoming more common in the Great Lakes. Outbreaks are caused by bird ingestion of neurotoxins produced by Clostridium botulinum, a spore-forming, gram-positive, anaerobe. The nuisance, macrophytic, green alga Cladophora (Chlorophyta; mostly Cladophora glomerata L.) is a potential habitat for the growth of C. botulinum. A high incidence of botulism in shoreline birds at Sleeping Bear Dunes National Lakeshore (SLBE) in Lake Michigan coincides with increasingly massive accumulations of Cladophora in nearshore waters. In this study, free-floating algal mats were collected from SLBE and other shorelines of the Great Lakes between June and October 2011. The abundance of C. botulinum in algal mats was quantified and the type of botulism neurotoxin (bont) genes associated with this organism were determined by using most-probable-number PCR (MPN-PCR) and five distinct bont gene-specific primers (A, B, C, E, and F). The MPN-PCR results showed that 16 of 22 (73%) algal mats from the SLBE and 23 of 31(74%) algal mats from other shorelines of the Great Lakes contained the bont type E (bont/E) gene. C. botulinum was present up to 15 000 MPN per gram dried algae based on gene copies of bont/E. In addition, genes for bont/A and bont/B, which are commonly associated with human diseases, were detected in a few algal samples. Moreover, C. botulinum was present as vegetative cells rather than as dormant spores in Cladophora mats. Mouse toxin assays done using supernatants from enrichment of Cladophora containing high densities of C. botulinum (>1000 MPN/g dried algae) showed that Cladophora-borne C. botulinum were toxin-producing species (BoNT/E). Our results indicate that Cladophora provides a habitat for C. botulinum, warranting additional studies to better understand the relationship between this bacterium and the alga, and how this interaction potentially contributes to botulism outbreaks in birds.

Great Lakes↗

USGS2012

Occurrence of pharmaceuticals, hormones, and organic wastewater compounds in Pennsylvania waters, 2006-09

Concern over the presence of contaminants of emerging concern, such as pharmaceutical compounds, hormones, and organic wastewater compounds (OWCs), in waters of the United States and elsewhere is growing. Laboratory techniques developed within the last decade or new techniques currently under development within the U.S. Geological Survey now allow these compounds to be measured at concentrations in nanograms per liter. These new laboratory techniques were used in a reconnaissance study conducted by the U.S. Geological Survey, in cooperation with the Pennsylvania Department of Environmental Protection, to determine the occurrence of contaminants of emerging concern in streams, streambed sediment, and groundwater of Pennsylvania. Compounds analyzed for in the study are pharmaceuticals (human and veterinary drugs), hormones (natural and synthetic), and OWCs (detergents, fragrances, pesticides, industrial compounds, disinfectants, polycyclic aromatic hydrocarbons, fire retardants and plasticizers). Reconnaissance sampling was conducted from 2006 to 2009 to identify contaminants of emerging concern in (1) groundwater from wells used to supply livestock, (2) streamwater upstream and downstream from animal feeding operations, (3) streamwater upstream from and streamwater and streambed sediment downstream from municipal wastewater effluent discharges, (4) streamwater from sites within 5 miles of drinking-water intakes, and (5) streamwater and streambed sediment where fish health assessments were conducted. Of the 44 pharmaceutical compounds analyzed in groundwater samples collected in 2006 from six wells used to supply livestock, only cotinine (a nicotine metabolite) and the antibiotics tylosin and sulfamethoxazole were detected. The maximum concentration of any contaminant of emerging concern was 24 nanograms per liter (ng/L) for cotinine, and was detected in a groundwater sample from a Lebanon County, Pa., well. Seven pharmaceutical compounds including acetaminophen, caffeine, carbamazepine, and the four antibiotics tylosin, sulfadimethoxine, sulfamethoxazole, and oxytetracycline were detected in streamwater samples collected in 2006 from six paired stream sampling sites located upstream and downstream from animal-feeding operations. The highest reported concentration of these seven compounds was for the antibiotic sulfamethoxazole (157 ng/L), in a sample from the downstream site on Snitz Creek in Lancaster County, Pa. Twenty-one pharmaceutical compounds were detected in streamwater samples collected in 2006 from five paired stream sampling sites located upstream or downstream from a municipal wastewater-effluent-discharge site. The most commonly detected compounds and maximum concentrations were the anticonvulsant carbamazepine, 276 ng/L; the antihistamine diphenhydramine, 135 ng/L; and the antibiotics ofloxacin, 329 ng/L; sulfamethoxazole, 1,340 ng/L; and trimethoprim, 256 ng/L. A total of 51 different contaminants of emerging concern were detected in streamwater samples collected from 2007 through 2009 at 13 stream sampling sites located downstream from a wastewater-effluent-discharge site. The concentrations and numbers of compounds detected were higher in stream sites downstream from a wastewater-effluent-discharge site than in stream sites upstream from a wastewater-effluent-discharge site. This finding indicates that wastewater-effluent discharges are a source of contaminants of emerging concern; these contaminants were present more frequently in the streambed-sediment samples than in streamwater samples. Antibiotic compounds were often present in both the streamwater and streambed-sediment samples, but many OWCs were present exclusively in the streambed-sediment samples. Compounds with endocrine disrupting potential including detergent metabolites, pesticides, and flame retardants, were present in the streamwater and streambed-sediment samples. Killinger Creek, a stream where wastewater-effluent discharges contribute a large percentage of the total flow, stands out as a stream with particularly high numbers of compounds detected and detected at the highest concentrations measured in the reconnaissance sampling. Nineteen contaminants of emerging concern were detected in streamwater samples collected quarterly from 2007 through 2009 at 27 stream sites within 5 miles of a drinking-water intake. The number of contaminants and the concentrations detected at the stream sites within 5 miles of drinking-water intakes were generally very low (concentrations less than 50 ng/L), much lower than those at sites downstream from a wastewater-effluent discharge. The most commonly detected compounds and maximum concentrations were caffeine, 517 ng/L; carbamazepine, 95 ng/L; sulfamethoxazole, 146 ng/L; and estrone, 3.15 ng/L. The concentrations and frequencies of detection of some of the contaminants of emerging concern appear to vary by season, which could be explained by compound use, flow regime, or differences in degradation rates. Concentrations of some contaminants were associated with lower flows as a result of decreased in-stream dilution of wastewater effluents or other contamination sources. Twenty-two contaminants of emerging concern were detected once each in streamwater samples collected in 2007 and 2008 from 16 fish-health stream sites located statewide. The highest concentrations were for the OWCs, including flame retardants tri(2-butoxyethyl)phosphate (604 ng/L) and tri(2-chloroethyl)phosphate (272 ng/L) and the fragrance isoquinoline (330 ng/L). Far fewer numbers of contaminants of emerging concern were detected at the fish-health sites than at the wastewater-effluent-discharge sites. Most of the fish-health sites were not located directly downstream from a wastewater-effluent discharge, but there were multiple wastewater-effluent discharges in the drainage basins upstream from the sampling sites. No distinct pattern of contaminant occurrence could be discerned for the fish-health stream sites

Pennsylvania↗

USGS2008

Water-quality effects and characterization of indicators of onsite wastewater disposal systems in the east-central Black Hills area, South Dakota, 2006-08

Onsite wastewater disposal systems (OWDS) are used extensively in the Black Hills of South Dakota where many of the watersheds and aquifers are characterized by fractured or solution-enhanced bedrock with thin soil cover. A study was conducted during 2006-08 to characterize water-quality effects and indicators of OWDS. Water samples were collected and analyzed for potential indicators of OWDS, including chloride, bromide, boron, nitrite plus nitrate (NO2+NO3), ammonia, major ions, nutrients, selected trace elements, isotopes of nitrate, microbiological indicators, and organic wastewater compounds (OWCs). The microbiological indicators were fecal coliforms, Escherichia coli (E. coli), enterococci, Clostridium perfringens (C. perfringens), and coliphages. Sixty ground-water sampling sites were located either downgradient from areas of dense OWDS or in background areas and included 25 monitoring wells, 34 private wells, and 1 spring. Nine surface-water sampling sites were located on selected streams and tributaries either downstream or upstream from residential development within the Precambrian setting. Sampling results were grouped by their hydrogeologic setting: alluvial, Spearfish, Minnekahta, and Precambrian. Mean downgradient dissolved NO2+NO3 concentrations in ground water for the alluvial, Spearfish, Minnekahta, and Precambrian settings were 0.734, 7.90, 8.62, and 2.25 milligrams per liter (mg/L), respectively. Mean downgradient dissolved chloride concentrations in ground water for these settings were 324, 89.6, 498, and 33.2 mg/L, respectively. Mean downgradient dissolved boron concentrations in ground water for these settings were 736, 53, 64, and 43 micrograms per liter (ug/L), respectively. Mean dissolved surface-water concentrations for NO2+NO3, chloride, and boron for downstream sites were 0.222 mg/L, 32.1 mg/L, and 28 ug/L, respectively. Mean values of delta-15N and delta-18O (isotope ratios of 14N to 15N and 18O to 16O relative to standard ratios) for nitrate in ground-water samples were 10.4 and -2.0 per mil (0/100), respectively, indicating a relatively small contribution from synthetic fertilizer and probably a substantial contribution from OWDS. The surface-water sample with the highest dissolved NO2+NO3 concentration of 1.6 mg/L had a delta-15N value of 12.36 0/100, which indicates warm-blooded animals (including humans) as the nitrate source. Fecal coliforms were detected in downgradient ground water most frequently in the Spearfish (19 percent) and Minnekahta (9.7 percent) settings. E. coli was detected most frequently in the Minnekahta (29 percent) and Spearfish (13 percent) settings. Enterococci were detected more frequently than other microbiological indicators in all four settings. Fecal coliforms and E. coli were detected in 73 percent and 95 percent of all surface-water samples, respectively. Enterococci, coliphages (somatic), and C. perfringens were detected in 50, 70, and 50 percent of surface-water samples, respectively. Of the 62 OWC analytes, 12 were detected only in environmental samples, 10 were detected in at least one environmental and one blank sample (not necessarily companion pairs), 2 were detected only in blank samples, and 38 were not detected in any blank, environmental, or replicate sample from either ground or surface water. Eleven different organic compounds were detected in ground-water samples at eight different sites. The most frequently occurring compound was DEET, which was found in 32 percent of the environmental samples, followed by tetrachloroethene, which was detected in 20 percent of the samples. For surface-water samples, 16 organic compounds were detected in 9 of the 10 total samples. The compound with the highest occurrence in surface-water samples was camphor, which was detected in 50 percent of samples. The alluvial setting was characterized by relatively low dissolved NO2+NO3 concentrations, detection of ammonia nitrogen, and relatively high concentr

South Dakota↗

USGS2023

Broadscale distribution, abundance and habitat associations of the invasive Asian clam (Corbicula fluminea) in the lower Columbia River, USA

The Asian clam, Corbicula fluminea , is an invasive freshwater bivalve that has established populations across the globe and is known to have deleterious effects on natural and human systems. Yet, despite being present in the Columbia River (CR) for nearly a century, little is known about this invader's basic biology and ecology in this large river system. Thus, we undertook a field study to assess its i) broadscale distribution and abundance, and ii) associations with habitat characteristics in the lower CR. During 2019-20, C. fluminea were collected from 27 shore-based stations spanning 481 river kilometers of the lower CR, along with several habitat characteristics (bank slope, temperature, dissolved oxygen, pH, salinity, conductivity, chlorophyll- a concentration, and sediment composition and % organic matter). C. fluminea abundance ranged from 0-430 ind. m -2 . Most sites with abundances >100 ind. m -2 were located downstream of Bonneville Dam, while most sites with abundances < 100 ind. m -2 were located upstream. Generalized linear models predicting the abundance of C. fluminea indicated significantly positive correlations with water temperature and % sand, and negative correlations with bank slope and sedimentary % organic matter. We also reviewed the global literature on abundance and habitat associations of C. fluminea and compared this with our own results. Our investigation represents the greatest spatial extent at which C. fluminea has been studied in the CR and our results provide a better understanding of the basic biology and ecology of this global invader, as well as provide natural resource managers with information on habitat conditions favorable for this invasive bivalve within temperate river ecosystems.

Oregon, Washington↗

USGS2020

Lifetime chronicles of selenium exposure linked to deformities in an imperiled migratory fish

Aquatic ecosystems worldwide face growing threats from elevated levels of contaminants from human activities. Toxic levels of selenium (Se) shown to cause deformities in birds, fish, and mammals can transfer from parents to progeny during embryonic development or accumulate through Se-enriched diets. For migratory species that move across landscapes, tracking exposure to elevated Se is vital to mitigating vulnerabilities. Yet, traditional toxicological investigations resolve only recent Se exposure. Here, we use a novel combination of X-ray fluorescence microscopy and depositional chronology in a biomineral to reveal for the first time provenance, life stage, and duration of toxic Se exposure over the lifetime of an organism. Spinal deformities observed in wild Sacramento Splittail ( Pogonichthys macrolepidotus ), an imperiled migratory minnow, were attributed to elevated Se acquired through maternal transfer and juvenile feeding on contaminated prey. This novel approach paves the way for diagnosing sources, pathways, and potential for a cumulative exposure of Se relevant for conservation.

California↗

USGS2013

A bibliography of all known publications & reports on the Gulf sturgeon, Acipenser oxyrinchus desotoi

This functional bibliography is meant to be a complete and comprehensive bibliography of all discoverable reports containing information on the Gulf Sturgeon (GS). This bibliography contains all known reports presenting, documenting, summarizing, listing, or interpreting information on the GS through 31 December 2013. Report citations are organized into four sections. Section I includes published scientific journal articles, books, dissertations and theses, published and unpublished technical reports, published harvest prohibitions, and online articles reporting substantive scientific information. Section II includes newspaper, newsletter, magazine, book, agency news releases, and online articles reporting on GS occurrences, mortalities, captures, jumping, boat collisions, aquaculture, historical photographs, and other largely non-scientific or anecdotal issues. Section III consists of books, theses, ecotour-guides, media articles, editorials, and blogs reporting a mix of anecdotal information, historical information, and opinion on GS conservation, habitat issues, exploitation, aquaculture, and human interaction - but presenting very limited or no substantive scientific information. Section IV includes videos, films and audio recordings documenting GS life history and behavior.

Report↗