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USGS2008

Magnetic monitoring of earth and space

For centuries, navigators of the world’s oceans have been familiar with an effect of Earth’s magnetic field: It imparts a directional preference to the needle of a compass. Although in some settings magnetic orientation remains important, the modern science of geomagnetismhas emerged from its romantic nautical origins and developed into a subject of great depth and diversity. The geomagnetic field is used to explore the dynamics of Earth’s interior and its surrounding space environment, and geomagnetic data are used for geophysical mapping, mineral exploration, risk mitigation, and other practical applications. A global distribution of ground-based magnetic observatories supports those pursuits by providing accurate records of the magnetic-field direction and intensity at fixed locations and over long periods of time. Magnetic observatories were first established in the early 19th century in response to the influence of Alexander von Humboldt and Carl Friedrich Gauss. Since then, magnetic measurement has advanced significantly, progressing from simple visual readings of magnetic survey instruments to include automatic photographic measurement and modern electronic acquisition. To satisfy the needs of the scientific community, observatories are being upgraded to collect data that meet ever more stringent standards, to achieve higher acquisition frequencies, and to disseminate data in real time. To appreciate why data from magnetic observatories can be used for so many purposes, one needs only to recall that the geomagnetic field is a continuum, connecting the different parts of Earth to each other and to nearby space. Beneath our feet and above our heads, electric currents generate magnetic fields that contribute to the totality of the geomagnetic field measured at an observatory on Earth’s surface. The many physical processes that operate in each geophysical domain give rise to a complicated field that exhibits a wide variety of time-dependent behavior. In this article I review the status of the global community of magnetic observatories, show how Earth and space can be monitored for purposes of scientific understanding and practical application, and highlight the role played by magnetic observatories in the history of geomagnetism research.

Physics Today↗

USGS2013

Focused ion beam and field-emission microscopy of metallic filaments in memory devices based on thin films of an ambipolar organic compound consisting of oxadiazole, carbazole, and fluorene units

We report on the mechanism of operation of organic thin film resistive memory architectures based on an ambipolar compound consisting of oxadiazole, carbazole, and fluorene units. Cross-sections of the devices have been imaged by electron microscopy both before and after applying a voltage. The micrographs reveal the growth of filaments, with diameters of 50 nm–100 nm, on the metal cathode. We suggest that these are formed by the drift of aluminium ions from the anode and are responsible for the observed switching and negative differential resistance phenomena in the memory devices.

Applied Physics Letters↗

USGS2009

Fractionation of stable isotopes in perchlorate and nitrate during in situ biodegradation in a sandy aquifer

An in situ experiment was performed in a shallow alluvial aquifer in Maryland to quantify the fractionation of stable isotopes in perchlorate (Cl and O) and nitrate (N and O) during biodegradation. An emulsified soybean oil substrate that was previously injected into this aquifer provided the electron donor necessary for biological perchlorate reduction and denitrification. During the field experiment, groundwater extracted from an upgradient well was pumped into an injection well located within the in situ oil barrier, and then groundwater samples were withdrawn for the next 30 h. After correction for dilution (using Br– as a conservative tracer of the injectate), perchlorate concentrations decreased by 78% and nitrate concentrations decreased by 82% during the initial 8.6 h after the injection. The observed ratio of fractionation effects of O and Cl isotopes in perchlorate (e18O/e37Cl) was 2.6, which is similar to that observed in the laboratory using pure cultures (2.5). Denitrification by indigenous bacteria fractionated O and N isotopes in nitrate at a ratio of ~0.8 (e18O/e15N), which is within the range of values reported previously for denitrification. However, the magnitudes of the individual apparent in situ isotope fractionation effects for perchlorate and nitrate were appreciably smaller than those reported in homogeneous closed systems (0.2 to 0.6 times), even after adjustment for dilution. These results indicate that (1) isotope fractionation factor ratios (e18O/e37Cl, e18O/e15N) derived from homogeneous laboratory systems (e.g. pure culture studies) can be used qualitatively to confirm the occurrence of in situ biodegradation of both perchlorate and nitrate, but (2) the magnitudes of the individual apparent e values cannot be used quantitatively to estimate the in situ extent of biodegradation of either anion.

Environmental Chemistry↗

USGS2020

Surficial geochemistry and bioaccessibility of tellurium in semi-arid mine tailings

Tellurium (Te) is a critical element due to its use in solar technology. However, some forms are highly toxic. Few studies have examined Te behavior in the surficial environment, thus little is known about its potential human and environmental health impacts. This study characterizes two physicochemically distinct Te-enriched mine tailings piles (big and flat tailings) deposited by historic gold (Au) mining in the semi-arid Delamar mining district, Nevada. The big tailings are characterized by smaller particle size and higher concentrations of potentially toxic elements (up to 290 mg Te kg-1), which are enriched at the tailings surface. In contrast, the flat tailings have larger particle size and properties that are relatively invariant with depth. Based on the sulfate to sulfide ratio, the tailings were determined to be sulfate dominated suggesting a high degree of weathering, although the flat tailings did contain significant amounts of sulfides (~40%). Tellurium x-ray absorption spectroscopy of the big tailings indicates that tellurate, the less toxic Te species, is the principal form of Te. Electron microscopy indicates that most of the Te present at the site is associated with iron (oxy)hydroxides, sometimes with other potentially toxic elements, especially lead and antimony. Physiologically-based extraction tests indicate that substantially more Te is solubilized in synthetic stomach fluids than in lung fluids, with gastric bioaccessibility ranging from 13-31% of total Te. This points to low to medium bioaccessibility, which is common for iron (oxy)hydroxide associated elements. Together, these results represent a preliminary assessment of Te surficial behavior in a semi-arid environment and indicate that Te in these tailings represent a moderate health concern.

Environmental Chemistry↗

USGS2021

Expanding freshwater biologger studies to view fish as environmental sensing platforms

While recording fish habitat use by electronic sensors, biologgers can also be viewed as autonomous environmental monitoring systems with the organism as a vehicle. This dual perspective has provided novel results from marine ecosystems, but has not been applied to freshwater ecosystems. To understand limitations in fresh water, we evaluated miniature depth and temperature recorders as aquatic monitoring systems in a Laurentian Great Lake: Erie. As part of an acoustic telemetry study, biologgers were opportunistically implanted in a subsample of walleye Sander vitreus . Biologgers recorded temperature and depth at half-hour intervals for up to 1 year. Recaptures provided six biologgers for analysis of seasonal temperature patterns and lake stratification, key variables for understanding dimictic lakes. Depth-resolved temperature patterns showed close correspondence with independent weather buoy measurements. Because the buoy was deployed late in the season, biologger data provided improved estimates of the start of stratification, which had important implications for understanding development of hypoxia in the hypolimnion. Drawbacks to biologger data included imprecise knowledge of fish location and reliance on tag recoveries from the fishery. Optimistically, our results show how biologgers could be part of a monitoring approach that integrates limnological surveys with fisheries science.

Marine and Freshwater Research↗

USGS2013

Uranium redox transition pathways in acetate-amended sediments

Redox transitions of uranium [from U(VI) to U(IV)] in low-temperature sediments govern the mobility of uranium in the environment and the accumulation of uranium in ore bodies, and inform our understanding of Earth’s geochemical history. The molecular-scale mechanistic pathways of these transitions determine the U(IV) products formed, thus influencing uranium isotope fractionation, reoxidation, and transport in sediments. Studies that improve our understanding of these pathways have the potential to substantially advance process understanding across a number of earth sciences disciplines. Detailed mechanistic information regarding uranium redox transitions in field sediments is largely nonexistent, owing to the difficulty of directly observing molecular-scale processes in the subsurface and the compositional/physical complexity of subsurface systems. Here, we present results from an in situ study of uranium redox transitions occurring in aquifer sediments under sulfate-reducing conditions. Based on molecular-scale spectroscopic, pore-scale geochemical, and macroscale aqueous evidence, we propose a biotic–abiotic transition pathway in which biomass-hosted mackinawite (FeS) is an electron source to reduce U(VI) to U(IV), which subsequently reacts with biomass to produce monomeric U(IV) species. A species resembling nanoscale uraninite is also present, implying the operation of at least two redox transition pathways. The presence of multiple pathways in low-temperature sediments unifies apparently contrasting prior observations and helps to explain sustained uranium reduction under disparate biogeochemical conditions. These findings have direct implications for our understanding of uranium bioremediation, ore formation, and global geochemical processes.

PNAS↗

USGS2019

Stratification of reactivity determines nitrate removal in groundwater

Biogeochemical reactions occur unevenly in space and time, but this heterogeneity is often simplified as a linear average due to sparse data, especially in subsurface environments where access is limited. For example, little is known about the spatial variability of groundwater denitrification, an important process in removing nitrate originating from agriculture and land use conversion. Information about the rate, arrangement, and extent of denitrification is needed to determine sustainable limits of human activity and to predict recovery time frames. Here, we developed and validated a method for inferring the spatial organization of sequential biogeochemical reactions in an aquifer in France. We applied it to five other aquifers in different geological settings located in the United States and compared results among 44 locations across the six aquifers to assess the generality of reactivity trends. Of the sampling locations, 79% showed pronounced increases of reactivity with depth. This suggests that previous estimates of denitrification have underestimated the capacity of deep aquifers to remove nitrate, while overestimating nitrate removal in shallow flow paths. Oxygen and nitrate reduction likely increases with depth because there is relatively little organic carbon in agricultural soils and because excess nitrate input has depleted solid phase electron donors near the surface. Our findings explain the long-standing conundrum of why apparent reaction rates of oxygen in aquifers are typically smaller than those of nitrate, which is energetically less favorable. This stratified reactivity framework is promising for mapping vertical reactivity trends in aquifers, generating new understanding of subsurface ecosystems and their capacity to remove contaminants.

Proceedings of the National Academy of Sciences↗

USGS2021

Carotenoid biomarkers in Namibian shelf sediments: Anoxygenic photosynthesis during sulfide eruptions in the Benguela Upwelling System

Anoxygenic photosynthesis by phototrophic sulfur bacteria is prevalent in microbial mat ecosystems and in restricted, highly stratified aquatic environments. This limited distribution reflects their simultaneous requirements for an anoxic habitat, reduced sulfur to supply electrons for carbon fixation, and an appropriate light regime. Although these conditions were often satisfied in ancient seas, as shown by the distinctive carotenoid and chlorophyll pigments preserved in geological samples going back as far as 1.65 billion y, we can find no record of these organisms growing in today’s generally well-ventilated oceans. An array of carotenoids in sediments from the Namibian shelf suggests that green sulfur bacteria, despite their sensitivity to oxygen, can proliferate during episodic toxic gas eruptions in the Benguela Upwelling System.

PNAS↗

USGS2011

Who's your momma? Recognizing maternal origin of juvenile steelhead using injections of strontium chloride to create transgenerational marks

We sought to determine whether a strontium chloride injection could be used to create a transgenerational otolith mark in steelhead Oncorhynchus mykiss . Two strontium injection trials and a survey of strontium: calcium (Sr:Ca) ratios in juvenile steelhead from various steelhead hatcheries were conducted to test the feasibility of the technique. In both trials, progeny of fish injected with strontium had significantly higher Sr:Ca ratios in the primordial region of their otoliths, as measured by an electron wavelength dispersive microprobe. In trial 1, the 5,000-mg/L treatment level showed that 56.8% of the otoliths were correctly classified, 12.2% being misclassified as belonging to the 0-mg/L treatment. In trial 2, the 20,000-mg/L treatment level showed that 30.8% of the otoliths were correctly classified, 13.5% being misclassified as belonging to the 0-mg/L treatment. There were no differences in the fertilization rates of eggs or survival rates of fry between the treatment and control groups. The Sr:Ca ratios in otoliths collected from various hatchery populations of steelhead varied and were greater than those found in otoliths from control fish in both of our injection trials. This study suggests that the marking technique led to recognizable increases in Sr:Ca ratios in some otoliths collected from fry produced by injected females. Not all progeny showed such increases, however, suggesting that the method holds promise but requires further refinement to reduce variation. Overall, there was a correct classification of about 40% across all treatments and trials; the variation in Sr:Ca ratios found among experimental trials and hatcheries indicates that care must be taken if the technique is employed where fish from more than one hatchery could be involved.

Transactions of the American Fisheries Society↗

USGS2016

Ontogenetic development of otoliths in Alligator Gar

The Alligator Gar Atractosteus spatula is a species of conservation concern throughout its range, and better definition of otoliths during early development would aid understanding its life history and ecology. We conducted X-ray computed tomography scans, scanning electron microscopy, and light microscopy to examine the three pairs of otoliths and how they developed over time in relation to fish size and age. The sagittae are the largest, possessing distinct dorsal and ventral lobes covered with small otoconia concentrated in the sulcul region. The sagittae exhibited allometric growth, increasing more rapidly in the ventral lobe than in the dorsal. The asterisci were smaller and also exhibited small otoconia on their surface, but much less than the sagittae. The lapilli were oriented laterally, in contrast to the sagittae and asterisci, which were oriented vertically, with a hump on the dorsum and very large otoconia on the lateral surface that appeared to fuse into the main otolith as the fish grew. Based on size measurements and ring counts in all three pairs of otoliths from 101 known-age Alligator Gar sampled weekly through 91 d after hatch, we developed regression models to examine otolith growth and predict age. All relationships were significant and highly explanatory, but the strongest relationships were between otolith and fish size (for measurements from sagittae) and for age predictions from the lapillus. Age prediction models all resulted in a slope near unity, indicating that ring deposition occurred approximately daily. The first ring in sagittae and lapilli corresponded to swim-up, whereas the first ring formed in asterisci approximately 8 d after swim-up. These results fill a gap in knowledge and can aid understanding of evolutionary processes as well as provide useful information for management and conservation.

Transactions of the American Fisheries Society↗

USGS2006

Plasticity at crack tips in Gd3Ga5O12 garnet single crystals deformed at temperatures below 950°C

Single crystals of Gd 3 Ga 5 O 12 have been strained under confining pressure (1 5 GPa) at temperatures below 950°C. No evidence for macroscopic plasticity was found, but transmission electron microscopy revealed dislocation generation at crack tips. Deformation mechanisms are different from those operating in the high-temperature regime: extending stacking faults in {110} planes and the 〈010〉{100} glide system were observed. Dissociations of a /4〈111〉 partial dislocations were also observed.

Philosophical Magazine A: Physics of Condensed Mat↗

USGS2003

Immobilization of cobalt by sulfate-reducing bacteria in subsurface sediments

We investigated the impact of sulfate-reduction on immobilization of metals in subsurface aquifers. Co 2+ was used as a model for heavy metals. Factors limiting sulfate-reduction dependent Co 2+ immobilization were tested on pure cultures of sulfate-reducing bacteria, and in sediment columns from a landfill leachate contaminated aquifer. In the presence of 1 mM Co 2+ , the growth of pure cultures of sulfate-reducing bacteria was not impacted. Cultures of Desulfovibrio desulfuricans, Desulfotomaculum gibsoniae , and Desulfomicrobium hypogeia removed greater than 99.99% of the soluble Co 2+ when CoCl 2 was used with no chelators. The above cultures and Desulfoarcula baarsi removed 98-99.94% of the soluble Co(II) when the metal was complexed with the model ligand nitrilotriacetate (Co-NTA). Factors controlling the rate of sulfate-reduction based Co 2+ precipitation were investigated in sediment-cobalt mixtures. Several electron donors were tested and all but toluene accelerated soluble Co 2+ loss. Ethanol and formate showed the greatest stimulation. All complex nitrogen sources tested slowed and decreased the extent of Co 2+ removal from solution relative to formate-amended sediment incubations. A range of pH values were tested (6.35-7.81), with the more alkaline incubations exhibiting the largest precipitation of Co 2+ . The immobilization of Co 2+ in sediments was also investigated with cores to monitor the flow of Co 2+ through undisturbed sediments. An increase in the amount of Co 2+ immobilized as CoS was observed as sulfate reduction activity was stimulated in flow through columns. Both pure culture and sediment incubation data indicate that stimulation of sulfate reduction is a viable strategy in the immobilization of contaminating metals in subsurface systems.

Geomicrobiology Journal↗

USGS1988

Manganese inhibition of microbial iron reduction in anaerobic sediments

Potential mechanisms for the lack of Fe(II) accumulation in Mn(IV)‐con‐taining anaerobic sediments were investigated. The addition of Mn(IV) to sediments in which Fe(III) reduction was the terminal electron‐accepting process removed all the pore‐water Fe(II), completely inhibited net Fe(III) reduction, and stimulated Mn(IV) reduction. In a solution buffered at pH 7, Mn(IV) oxidized Fe(II) to amorphic Fe(III) oxide. Mn(IV) naturally present in oxic freshwater sediments also rapidly oxidized Fe(II). A pure culture of a dissimilatory FE(III)‐ and Mn(FV)‐reducing organism isolated from the sediments reduced Fe(III) to Fe(II) in the presence of Mn(IV) when ferrozine was present to trap Fe(II) before Mn(IV) oxidized it. Depth profiles of dissolved iron and manganese reported in previous studies suggest that Fe(II) diffusing up from the zone of Fe(III) reduction is consumed within the Mn(IV)‐reducing zone. These results demonstrate that preferential reduction of Mn(IV) by Fe(III)‐reducing bacteria cannot completely explain the lack of Fe(II) accumulation in anaerobic, Mn(IV)‐containing sedments, and indicate that Mn(IV) oxidation of Fe(II) is the mechanism that ultimately prevents Fe(II) accumulation.

Geomicrobiology Journal↗

USGS1993

Evaluation of 55Fe as a tracer of Fe(III) reduction in aquatic sediments

The potential utility of 55 Fe as a tracer for Fe(III) reduction in aquatic sediments was evaluated using freshwater sediments from the Potomac River, Md, in which Fe(III) reduction was the predominant terminal electron accepting process. In laboratory incubations of sediments amended with poorly crystalline 55 Fe(III) oxide, the accumulation of 55 Fe in Fe(II) over time paralleled Fe(II) production. However, within 1 h of addition of 55 Fe(III) oxide, significant quantities of 55 Fe were recovered in extractable (1 M sodium acetate, pH 5) and soluble Fe(II) pools. There was proportionately more 55 Fe(II) activity in sediments with higher Fe(II) concentrations. These results suggest that there was rapid isotopic exchange between 55 Fe in poorly crystalline Fe(III) oxide and the Fe(II) pools. Because of this exchange, 55 Fe could not be used to trace Fe(III) reduction in sediments in the manner that 35 SO 4 2− is used to trace sulfate reduction. Although accumulation of 55 Fe in Fe(II) pools paralleled unla‐beled Fe(II) production, given the relative ease with which Fe(II) pools in sediments can be measured there is no apparent advantage to using 55 Fe to follow Fe(III) reduction.

Geomicrobiology Journal↗

USGS2022

Biostratigraphically significant palynofloras from the Paleocene–Eocene boundary of the USA

Pollen and spores were recovered from the Paleocene Fort Union Formation and Paleocene–Eocene Willwood Formation of the Bighorn Basin (BHB), northwestern Wyoming, USA. In many local stratigraphic sections in the BHB, the base of the Eocene has been identified by the characteristic negative carbon isotope excursion (CIE) that marks the beginning of the Paleocene–Eocene Thermal Maximum (PETM). The palynotaxa from outcrop samples were examined using light microscopy (LM) and scanning electron microscopy (SEM). Seven new species are formally described ( Tricolpites vegrandis , Rousea spatium , Striatricolporites astutus , Striatopollis calidarius , Friedrichipollis geminus , Retistephanocolporites modicrassus and Retistephanocolporites pergrandis ). The temporal and geographic distributions of many of these palynotaxa suggest that hotter and more seasonally dry climates facilitated their northward range shifts during the PETM from the tropics or subtropics of the USA. For the temperate palynotaxa, the hotter and seasonally dry conditions resulted in local extirpation. A re-evaluation of the palynostratigraphic schemes established for the Paleocene–Eocene boundary confirms that the first appearance of Platycarya platycaryoides denotes the Paleocene–Eocene boundary in the Rocky Mountains region. A new Striatopollis calidarius Subzone, associated with early Wasatchian (Wa) Wa-0 and Wa-R faunas, is also recognized for CIE body localities in the BHB.

Wyoming↗

USGS2022

Diatoms.org: Supporting taxonomists, connecting communities

Consistent identification of diatoms is a prerequisite for studying their ecology, biogeography, and successful application as environmental indicators. However, taxonomic consistency among observers has been difficult to achieve because taxonomic information is scattered across numerous literature sources, presenting challenges to the diatomist. Firstly, literature is often inaccessible because of cost or its location in journals that are not widely circulated. Secondly, taxonomic revisions of diatoms are taking place faster than floras can be updated. Finally, taxonomic information is often contradictory across literature sources. These issues can be addressed by developing a content creation community dedicated to making taxonomic, ecological, and image-based data freely available for diatom researchers. Diatoms.org represents such a content curation community, providing open, online access to a vast amount of recent and historical information on North American diatom taxonomy and ecology. The content curation community aggregates existing taxonomic information, creates new content, and provides feedback in the form of corrections and notices of literature with nomenclatural changes. The website not only addresses the needs of experienced diatom scientists for consistent identification but is also designed to meet users at their level of expertise, including engaging the lay public in the importance of diatom science. The website now contains over 1000 species pages contributed by over 100 content contributors, from students to established scientists. The project began with the intent to provide accurate information on diatom identification, ecology, and distribution using an approach that incorporates engaging design, user feedback, and advanced data access technology. In retrospect, the project that began as an ‘extended electronic book’ has emerged not only as a means to support taxonomists, but for practitioners to communicate and collaborate, expanding the size of and benefits to the content curation community. In this paper, we outline the development of diatoms.org , document key elements of the project, examine ongoing challenges and consider the unexpected emergent properties, including the value of diatoms.org as a source of data. Ultimately, if the field of diatom taxonomy, ecology, and biodiversity is to be relevant, a new generation of taxonomists needs to be trained and employed using new tools. We propose that diatoms.org is in a key position to serve as a hub of training and continuity for the study of diatom biodiversity and aquatic conditions.

Diatom Research↗

USGS2002

Effects of Photoperiod on Behavior and Courtship of the Neosho madtom (Noturus placidus)

To test effects of long and short day-length on behavior of the Neosho madtom ( Noturus placidus ), we held six pairs of fish in separate tanks under 16 hr (L): 8 hr (D) (long-day) and six pairs under 12 hr (L): 12 hr (D) (short-day) photoperiods. An ethogram was created and behavior was electronically and continuously recorded. Two-minute intervals for each hour over four 4-day periods were examined, and proportion of time active and performing specific behaviors in each tank was analyzed to compare differences between treatments. Individuals held under 16 L, 8 D were more active during the light cycle than those in 12 L, 12 D. Specific behaviors examined included resting, swimming, feeding, aggression, cavity enhancement, and courtship. A higher proportion of time was spent performing cavity enhancement, cavities were deeper, and gravel size in cavities was smaller for those fish in the long-day treatment. Throughout the experiment various courtship behaviors were observed in male-female pairs held in 16 L, 8 D, but no such behaviors were observed in 12L, 12D. The relationships between a long photoperiod and activity, cavity enhancement, and courtship behaviors illustrate the influence of photoperiod on the Neosho madtom reproductive cycle.

Journal of Freshwater Ecology↗

USGS2011

Developing user-friendly habitat suitability tools from regional stream fish survey data

We developed user-friendly fish habitat suitability tools (plots) for fishery managers in Michigan; these tools are based on driving habitat variables and fish population estimates for several hundred stream sites throughout the state. We generated contour plots to show patterns in fish biomass for over 60 common species (and for 120 species grouped at the family level) in relation to axes of catchment area and low-flow yield (90% exceedance flow divided by catchment area) and also in relation to axes of mean and weekly range of July temperatures. The plots showed distinct patterns in fish habitat suitability at each level of biological organization studied and were useful for quantitatively comparing river sites. We demonstrate how these plots can be used to support stream management, and we provide examples pertaining to resource assessment, trout stocking, angling regulations, chemical reclamation of marginal trout streams, indicator species, instream flow protection, and habitat restoration. These straightforward and effective tools are electronically available so that managers can easily access and incorporate them into decision protocols and presentations.

North American Journal of Fisheries Management↗