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USGS2019

Response of tidal marsh vegetation to pulsed increases in flooding and nitrogen

Worldwide, human activities have modified hydrology and nutrient loading regimes in coastal wetlands. Understanding the interplay between these drivers and subsequent response of wetland plant communities is essential to informing wetland management and restoration efforts. Recent restoration strategies in Louisiana proposes to use sediment diversions from the Mississippi River to build land in adjacent wetlands and reduce the rate of land to open water conversion. In conjunction with sediment delivery, diversions can increase nutrient loads and water levels in the receiving basins. We conducted a greenhouse mesocosm experiment in which we exposed three common tidal freshwater and brackish marsh plants ( Panicum hemitomon, Sagittaria lancifolia, and Spartina patens ) to two nitrate loading rates [high (35 g N m 2 year −1 ) and low (0.25 g N m 2 year −1 )], and two flooding treatments (with and without diversion pulsing). Experimental units were set at two different elevations within the treatment tanks to simulate both a healthy and degraded marsh. Plant growth metrics and soil physicochemical properties were measured monthly. Final total biomass was determined at the study’s conclusion. Growth responses differed between species but were not significantly influenced by the treatments. Soil redox potential decreased significantly following the increase in flooding associated with the diversion pulse, but recovered to pre-diversion levels after a 3-month recovery period. Our study suggests short flooding pulses with a recovery period may be key for maintaining healthy marshes, however there remains a need for longer-term empirical studies to understand marsh response to pressures associated with river sediment diversions over time.

Louisiana↗

USGS2014

Guild-specific responses of avian species richness to LiDAR-derived habitat heterogeneity

Ecological niche theory implies that more heterogeneous habitats have the potential to support greater biodiversity. Positive heterogeneity-diversity relationships have been found for most studies investigating animal taxa, although negative relationships also occur and the scale dependence of heterogeneity-diversity relationships is little known. We investigated multi-scale, heterogeneity-diversity relationships for bird communities in a semi-arid riparian landscape, using airborne LiDAR data to derive key measures of structural habitat complexity. Habitat heterogeneity-diversity relationships were generally positive, although the overall strength of relationships varied across avian life history guilds (R 2 range: 0.03–0.41). Best predicted were the species richness indices of cavity nesters, habitat generalists, woodland specialists, and foliage foragers. Heterogeneity-diversity relationships were also strongly scale-dependent, with strongest associations at the 200-m scale (4 ha) and weakest associations at the 50-m scale (0.25 ha). Our results underscore the value of LiDAR data for fine-grained quantification of habitat structure, as well as the need for biodiversity studies to incorporate variation among life-history guilds and to simultaneously consider multiple guild functional types (e.g. nesting, foraging, habitat). Results suggest that certain life-history guilds (foliage foragers, cavity nesters, woodland specialists) are more susceptible than others (ground foragers, ground nesters, low nesters) to experiencing declines in local species richness if functional elements of habitat heterogeneity are lost. Positive heterogeneity-diversity relationships imply that riparian conservation efforts need to not only provide high-quality riparian habitat locally, but also to provide habitat heterogeneity across multiple scales.

California;Nevada↗

USGS2023

Searching for the Achilles heel(s) for maintaining invertebrate biodiversity across complexes of depressional wetlands

Wetlands are among the most threatened ecosystems worldwide due to climate change and land-use conversion. Regional biodiversity of temporary wetlands is dependent on the existence of habitat complexes with variable hydroperiods. Because temperature and rainfall regimes are predicted to shift globally, together with land-use patterns, different scenarios of wetland loss are expected in the future. To understand how wetland biodiversity might change in the future, it is important to evaluate how the loss of particular hydroperiods will affect overall diversity in a region. Using invertebrate datasets from five wetland complexes distributed across South and North America, we calculated beta diversity metrics for each region. Then we contrasted those metrics to simulations of sequential deletions of subsets (30%) of the long-, moderate- and short-hydroperiod wetlands to assess which wetland class would most affect invertebrate beta diversity in each region. Deletions of the short-hydroperiod wetlands led to the most significant decline in beta diversity. However, deletion effects of different wetland classes varied across study regions, with a negative correlation existing between deletions of the long- and short-hydroperiod wetlands on invertebrate beta diversity. Our simulations indicate that loss of short-hydroperiod wetlands will have the most significant effects on invertebrate beta diversity, but loss of long-hydroperiod wetlands will also be important. Thus, wetlands from both hydroperiod extremes should be considered when assessing potential biodiversity declines associated with habitat loss.

Journal for Nature Conservation↗

USGS2019

Distinguishing recent dispersal from historical genetic connectivity in the coastal California gnatcatcher

Habitat loss and fragmentation are primary threats to biodiversity worldwide. We studied the impacts of habitat loss and fragmentation on genetic connectivity and diversity among local aggregations of the California gnatcatcher ( Polioptila californica californica ) across its U.S. range. With a dataset of 268 individuals genotyped at 19 microsatellite loci, we analyzed genetic structure across the range using clustering analyses, exact tests for population differentiation, and a pedigree analysis to examine the spatial distribution of first-order relatives throughout the study area. In addition, we developed a habitat suitability model and related percent suitable habitat to genetic diversity indices within aggregations at two spatial scales. We detected a single genetic cluster across the range, with weak genetic structure among recently geographically isolated aggregations in the northern part of the range. The pedigree analysis detected closely related individuals across disparate aggregations and across large geographic distances in the majority of the sampled range, demonstrating that recent long-distance dispersal has occurred within this species. Genetic diversity was independent of suitable habitat at a local 5-km scale, but increased in a non-linear fashion with habitat availability at a broader, 30-km scale. Diversity declined steeply when suitable habitat within 30-km fell below 10%. Together, our results suggest that California gnatcatchers retain genetic connectivity across the majority of the current distribution of coastal sage scrub fragments, with the exception of some outlying aggregations. Connectivity may help support long-term persistence under current conservation and management strategies. However, emerging structure among more remote aggregations and associations between available habitat and genetic diversity also suggest that continued loss of habitat could threaten diversity and connectivity in the future.

California↗

USGS2023

Skinks of Oceania, New Guinea, and Eastern Wallacea: An underexplored biodiversity hotspot

Context: Skinks comprise the dominant component of the terrestrial vertebrate fauna in Oceania, New Guinea, and Eastern Wallacea (ONGEW). However, knowledge of their diversity is incomplete, and their conservation needs are poorly understood. Aims: To explore the diversity and threat status of the skinks of ONGEW and identify knowledge gaps and conservation needs. Methods: We compiled a list of all skink species occurring in the region and their threat categories designated by the International Union for Conservation of Nature. We used available genetic sequences deposited in the National Center for Biotechnology Information’s GenBank to generate a phylogeny of the region’s skinks. We then assessed their diversity within geographical sub-divisions and compared to other reptile taxa in the region. Key results: Approximately 300 species of skinks occur in ONGEW, making it the second largest global hotspot of skink diversity following Australia. Many phylogenetic relationships remain unresolved, and many species and genera are in need of taxonomic revision. One in five species are threatened with extinction, a higher proportion than almost all reptile families in the region. Conclusions: ONGEW contain a large proportion of global skink diversity on <1% of the Earth’s landmass. Many are endemic and face risks such as habitat loss and invasive predators. Yet, little is known about them, and many species require taxonomic revision and threat level re-assessment. Implications: The skinks of ONGEW are a diverse yet underexplored group of terrestrial vertebrates, with many species likely facing extreme risks in the near future. Further research is needed to understand the threats they face and how to protect them.

Pacific Conservation Biology↗

USGS2017

Flowering phenology shifts in response to biodiversity loss

Observational studies and experimental evidence agree that rising global temperatures have altered plant phenology—the timing of life events, such as flowering, germination, and leaf-out. Other large-scale global environmental changes, such as nitrogen deposition and altered precipitation regimes, have also been linked to changes in flowering times. Despite our increased understanding of how abiotic factors influence plant phenology, we know very little about how biotic interactions can affect flowering times, a significant knowledge gap given ongoing human-caused alteration of biodiversity and plant community structure at the global scale. We experimentally manipulated plant diversity in a California serpentine grassland and found that many plant species flowered earlier in response to reductions in diversity, with peak flowering date advancing an average of 0.6 days per species lost. These changes in phenology were mediated by the effects of plant diversity on soil surface temperature, available soil N, and soil moisture. Peak flowering dates were also more dispersed among species in high-diversity plots than expected based on monocultures. Our findings illustrate that shifts in plant species composition and diversity can alter the timing and distribution of flowering events, and that these changes to phenology are similar in magnitude to effects induced by climate change. Declining diversity could thus contribute to or exacerbate phenological changes attributed to rising global temperatures.

Proceedings of the National Academy of Sciences↗

USGS2018

Spatial extent of analysis influences observed patterns of population genetic structure in a widespread darter species (Percidae)

Connectivity among stream fish populations allows for exchange of genetic material and helps maintain genetic diversity, adaptive potential and population stability over time. Changes in species demographics and population connectivity have the potential to permanently alter the genetic patterns of stream fish, although these changes through space and time are variable and understudied in small‐bodied freshwater fish. As a spatially widespread, common species of benthic freshwater fish, the variegate darter ( Etheostoma variatum ) is a model species for documenting how patterns of genetic structure and diversity respond to increasing isolation due to large dams and how scale of study may shape our understanding of these patterns. We sampled variegate darters from 34 sites across their range in the North American Ohio River basin and examined how patterns of genetic structure and diversity within and between populations responded to historical population changes and dams within and between populations. Spatial scale and configuration of genetic structure varied across the eight identified populations, from tributaries within a watershed, to a single watershed, to multiple watersheds that encompass Ohio River mainstem habitats. This multiwatershed pattern of population structuring suggests genetic dispersal across large distances was and may continue to be common, although some populations remain isolated despite no apparent structural dispersal barriers. Populations with low effective population sizes and evidence of past population bottlenecks showed low allelic richness, but diversity patterns were not related to watershed size, a surrogate for habitat availability. Pairwise genetic differentiation ( F ST ) increased with fluvial distance and was related to both historic and contemporary processes. Genetic diversity changes were influenced by underlying population size and stability, and while instream barriers were not strong determinants of genetic structuring or loss of genetic diversity, they reduce population connectivity and may impact long‐term population persistence. The broad spatial scale of this study demonstrated the large spatial extent of some variegate darter populations and indicated that dispersal is more extensive than expected given the movement patterns typically observed for small‐bodied, benthic fish. Dam impacts depended on underlying population size and stability, with larger populations more resilient to genetic drift and allelic richness loss than smaller populations. Other darters that inhabit large river habitats may show similar patterns in landscape‐scale studies, and large river barriers may impact populations of small‐bodied fish more than previously expected. Estimation of dispersal rates and behaviours is critical to conservation of imperilled riverine species such as darters.

Freshwater Biology↗

USGS2023

Macroscale analyses suggest invasive plant impacts depend more on the composition of invading plants than on environmental context

Aim Native biodiversity is threatened by the spread of non-native invasive species. Many studies demonstrate that invasions reduce local biodiversity but we lack an understanding of how impacts vary across environments at the macroscale. Using ~11,500 vegetation surveys from ecosystems across the United States, we quantified how the relationship between non-native plant cover and native plant diversity varied across different compositions of invading plants (measured by non-native plant richness and evenness) and environmental contexts (measured by productivity and human activity). Location Continental United States. Time Period Surveys from 1990s-present. Major Taxa Studied Terrestrial plant communities. Methods We fit mixed effects models to understand how native plant richness, diversity and evenness varied with non-native cover. We tested how this relationship varied when non-native cover interacted with non-native plant richness and evenness, and with productivity and human activity. Results Across the United States, communities with greater cover of non-native plants had lower native plant richness and diversity but higher evenness, suggesting rare native plants can be lost while dominant plants decline in abundance. The relationship between non-native cover and native community diversity varied with non-native plant richness and evenness but was not associated with productivity and human activity. Negative associations were strongest in areas with low non-native richness and evenness, characterizing plant communities that were invaded by a dominant non-native plant. Main Conclusions Non-native plant cover provides a first approximation of invasion impacts on native community diversity, but the magnitude of impact depended on non-native plant richness and evenness. Relationships between non-native cover and native diversity were consistent in strength across continental scale gradients of productivity and human activity. Therefore, at the macroscale, invasive plant impacts on native plant communities likely depend more on the characteristics of the invading plants, that is the presence of a dominant invader, than on the environmental context.

Global Ecology and Biogeography↗

USGS2025

Establishing historical baselines of arthropod assemblages using rodent paleomiddens

Aim Arthropods are under-represented in paleoecological studies but are critical agents in ecological processes. Despite rigorous documentation of diverse arthropod assemblages from ancient rodent (or paleo) middens worldwide, their use for studying ancient arthropod diversity has stalled in recent decades. Here, we review published studies to identify how paleomidden arthropods can be leveraged to address significant questions in ecology and synthesise spatiotemporal trends in ancient arthropod diversity. Location Global with a focus on the Americas. Time Period From ~40,000 to 100 years before present. Major Taxa Studied Fossil arthropods preserved in rodent paleomiddens. Methods We identified four primary objectives in ecology that can be advanced using paleomidden arthropod fossils: the reconstruction of ancient biodiversity, the elucidation of mechanisms and processes driving arthropod range shifts, the incorporation of arthropods into ancient trophic webs, and the assessment of adaptive responses to changing environments. Results We identified 20 papers reporting arthropod remains, of which 14 provided data suitable for quantitative analyses. Although no significant differences in arthropod community diversity were found across broad geographic regions, substantial differences in community structure were observed. In North America, we also detected a decline in arthropod diversity from 10 to 5 ka BP, driven primarily by the absence of high-diversity assemblages during this period. Main Conclusions Paleomidden arthropods remain an underutilised ecological resource that can be leveraged to improve the inferential scope of arthropod research across spatiotemporal gradients. Collaboration between paleo- and neoecologists could help expand the sampling of ancient and modern arthropod communities, particularly those associated with paleomiddens, to create high-resolution datasets spanning important periods in biogeographical history. Paleomidden arthropods will remain a fundamental component for understanding arthropod biodiversity changes in the past, present, and future.

Global Ecology and Biogeography↗

USGS2007

Comparison of four artificial substrates and the Ponar grab for benthic invertebrate collection

Four different bottom‐placed artificial substrates were compared with the Ponar grab for collecting benthic invertebrates. Artificial substrate samples of organisms were larger and more diverse than those of the grab. Barbeque Basket samplers caught the most taxa and individuals and Beak Trays caught the least. Chironomids and crustaceans were dominant in artificial substrate samples. Exposure habitat (left or right bank) determined taxa availability, whereas sampler design determined suitability for colonization by the taxa. Diversity for Beak Tray samples was lower than that for other artificial substrates but higher than for Ponar samples. The Barbeque Basket, Bull Basket, and Multiple Plate samples were taxonomically similar. Ponar samples were different, and Beak Trays were of intermediate similarity. As qualitative samplers, Barbeque Baskets were 63 percent efficient, followed by Bull Baskets (55 percent), Multiple Plates (48 percent), Beak Trays (38 percent), and Ponar Grabs (6–10 percent). Bull Baskets required the least and Beak Trays the most replicates to be within a preselected percentage error of the mean at the 95 percent probability level for numbers of taxa and individuals, and for diversity. Under conditions of the study, Bull Baskets ranked highest, followed by Barbeque Baskets and Multiple Plates, in selected performance criteria. Differences between grab and artificial substrate samples are explainable in terms of major riverine habitats and characteristics of the collection methods.

Journal of the American Water Resources Associatio↗

USGS2009

Endogenic carbonate sedimentation in Bear Lake, Utah and Idaho, over the last two glacial-interglacial cycles

Sediments deposited over the past 220,000 years in Bear Lake, Utah and Idaho, are predominantly calcareous silty clay, with calcite as the dominant carbonate mineral. The abundance of siliciclastic sediment indicates that the Bear River usually was connected to Bear Lake. However, three marl intervals containing more than 50% CaCO 3 were deposited during the Holocene and the last two interglacial intervals, equivalent to marine oxygen isotope stages (MIS) 5 and 7, indicating times when the Bear River was not connected to the lake. Aragonite is the dominant mineral in two of these three high-carbonate intervals. The high-carbonate, aragonitic intervals coincide with warm interglacial continental climates and warm Pacific sea-surface temperatures. Aragonite also is the dominant mineral in a carbonate-cemented microbialite mound that formed in the southwestern part of the lake over the last several thousand years. The history of carbonate sedimentation in Bear Lake is documented through the study of isotopic ratios of oxygen, carbon, and strontium, organic carbon content, CaCO 3 content, X-ray diffraction mineralogy, and HCl-leach chemistry on samples from sediment traps, gravity cores, piston cores, drill cores, and microbialites. Sediment-trap studies show that the carbonate mineral that precipitates in the surface waters of the lake today is high-Mg calcite. The lake began to precipitate high-Mg calcite sometime in the mid-twentieth century after the artificial diversion of Bear River into Bear Lake that began in 1911. This diversion drastically reduced the salinity and Mg 2+ :Ca 2+ of the lake water and changed the primary carbonate precipitate from aragonite to high-Mg calcite. However, sediment-trap and core studies show that aragonite is the dominant mineral accumulating on the lake floor today, even though it is not precipitating in surface waters. The isotopic studies show that this aragonite is derived from reworking and redistribution of shallow-water sediment that is at least 50 yr old, and probably older. Apparently, the microbialite mound also stopped forming aragonite cement sometime after Bear River diversion. Because of reworking of old aragonite, the bulk mineralogy of carbonate in bottom sediments has not changed very much since the diversion. However, the diversion is marked by very distinct changes in the chemical and isotopic composition of the bulk carbonate. After the last glacial interval (LGI), a large amount of endogenic carbonate began to precipitate in Bear Lake when the Pacific moisture that filled the large pluvial lakes of the Great Basin during the LGI diminished, and Bear River apparently abandoned Bear Lake. At first, the carbonate that formed was low-Mg calcite, but ???11,000 years ago, salinity and Mg 2+ :Ca 2+ thresholds must have been crossed because the amount of aragonite gradually increased. Aragonite is the dominant carbonate mineral that has accumulated in the lake for the past 7000 years, with the addition of high-Mg calcite after the diversion of Bear River into the lake at the beginning of the twentieth century. Copyright ?? 2009 The Geological Society of America.

Special Paper of the Geological Society of America↗

USGS2008

Landscape-scale evaluation of genetic structure among barrier-isolated populations of coastal cutthroat trout, Oncorhynchus clarkii clarkii

Relationships among landscape structure, stochastic disturbance, and genetic diversity were assessed by examining interactions between watershed-scale environmental factors and genetic diversity of coastal cutthroat trout (Oncorhynchus clarkii clarkii) in 27 barrier-isolated watersheds from western Oregon, USA. Headwater populations of coastal cutthroat trout were genetically differentiated (mean FST = 0.33) using data from seven microsatellite loci (2232 individuals), but intrapopulation microsatellite genetic diversity (mean number of alleles per locus = 5, mean He = 0.60) was only moderate. Genetic diversity of coastal cutthroat trout was greater (P = 0.02) in the Coast Range ecoregion (mean alleles = 47) than in the Cascades ecoregion (mean alleles = 30), and differences coincided with indices of regional within-watershed complexity and connectivity. Furthermore, regional patterns of diversity evident from isolation-by-distance plots suggested that retention of within-population genetic diversity in the Coast Range ecoregion is higher than that in the Cascades, where genetic drift is the dominant factor influencing genetic patterns. Thus, it appears that physical landscape features have influenced genetic patterns in these populations isolated from short-term immigration. ?? 2008 NRC.

Canadian Journal of Fisheries and Aquatic Sciences↗

USGS2008

Genetic characterization of Hawaiian isolates of Plasmodium relictum reveals mixed-genotype infections

Background: The relatively recent introduction of a highly efficient mosquito vector and an avian pathogen (Plasmodium relictum) to an isolated island ecosystem with nai??ve, highly susceptible avian hosts provides a unique opportunity to investigate evolution of virulence in a natural system. Mixed infections can significantly contribute to the uncertainty in host-pathogen dynamics with direct impacts on virulence. Toward further understanding of how host-parasite and parasite-parasite relationships may impact virulence, this study characterizes within-host diversity of malaria parasite populations based on genetic analysis of the trap (thrombospondin-related anonymous protein) gene in isolates originating from Hawaii, Maui and Kauai Islands. Methods: A total of 397 clones were produced by nested PCR amplification and cloning of a 1664 bp fragment of the trap gene from two malarial isolates, K1 (Kauai) and KV115 (Hawaii) that have been used for experimental studies, and from additional isolates from wild birds on Kauai, Maui and Hawaii Islands. Diversity of clones was evaluated initially by RFLP-based screening, followed by complete sequencing of 33 selected clones. Results: RFLP analysis of trap revealed a minimum of 28 distinct RFLP haplotypes among the 397 clones from 18 birds. Multiple trap haplotypes were detected in every bird evaluated, with an average of 5.9 haplotypes per bird. Overall diversity did not differ between the experimental isolates, however, a greater number of unique haplotypes were detected in K1 than in KV115. We detected high levels of clonal diversity with clear delineation between isolates K1 and KV115 in a haplotype network. The patterns of within-host haplotype clustering are consistent with the possibility of a clonal genetic structure and rapid within-host mutation after infection. Conclusion: Avian malaria (P. relictum) and Avipoxvirus are the significant infectious diseases currently affecting the native Hawaiian avifauna. This study shows that clonal diversity of Hawaiian isolates of P. relictum is much higher than previously recognized. Mixed infections can significantly contribute to the uncertainty in host-pathogen dynamics with direct implications for host demographics, disease management strategies, and evolution of virulence. The results of this study indicate a widespread presence of multiple-genotype malaria infections with high clonal diversity in native birds of Hawaii, which when coupled with concurrent infection with Avipoxvirus, may significantly influence evolution of virulence. ?? 2008 Jarvi et al; licensee BioMed Central Ltd.

Biology Direct↗

USGS2018

From top to bottom: Do Lake Trout diversify along a depth gradient in Great Bear Lake, NT, Canada?

Depth is usually considered the main driver of Lake Trout intraspecific diversity across lakes in North America. Given that Great Bear Lake is one of the largest and deepest freshwater systems in North America, we predicted that Lake Trout intraspecific diversity to be organized along a depth axis within this system. Thus, we investigated whether a deep-water morph of Lake Trout co-existed with four shallow-water morphs previously described in Great Bear Lake. Morphology, neutral genetic variation, isotopic niches, and life-history traits of Lake Trout across depths (0–150 m) were compared among morphs. Due to the propensity of Lake Trout with high levels of morphological diversity to occupy multiple habitat niches, a novel multivariate grouping method using a suite of composite variables was applied in addition to two other commonly used grouping methods to classify individuals. Depth alone did not explain Lake Trout diversity in Great Bear Lake; a distinct fifth deep-water morph was not found. Rather, Lake Trout diversity followed an ecological continuum, with some evidence for adaptation to local conditions in deep-water habitat. Overall, trout caught from deep-water showed low levels of genetic and phenotypic differentiation from shallow-water trout, and displayed higher lipid content (C:N ratio) and occupied a higher trophic level that suggested an potential increase of piscivory (including cannibalism) than the previously described four morphs. Why phenotypic divergence between shallow- and deep-water Lake Trout was low is unknown, especially when the potential for phenotypic variation should be high in deep and large Great Bear Lake. Given that variation in complexity of freshwater environments has dramatic consequences for divergence, variation in the complexity in Great Bear Lake (i.e., shallow being more complex than deep), may explain the observed dichotomy in the expression of intraspecific phenotypic diversity between shallow- vs. deep-water habitats. The ambiguity surrounding mechanisms driving divergence of Lake Trout in Great Bear Lake should be seen as reflective of the highly variable nature of ecological opportunity and divergent natural selection itself.

Northwest Territories↗

USGS2016

Ecological and evolutionary consequences of benthic community stasis in the very deep sea (>1500 m)

An enigma of deep-sea biodiversity research is that the abyss with its low productivity and densities appears to have a biodiversity similar to that of shallower depths. This conceptualization of similarity is based mainly on per-sample estimates (point diversity, within-habitat, or α-diversity). Here, we use a measure of between-sample within-community diversity (β 1H ) to examine benthic foraminiferal diversity between 333 stations within 49 communties from New Zealand, the South Atlantic, the Gulf of Mexico, the Norwegian Sea, and the Arctic. The communities are grouped into two depth categories: 200–1500 m and >1500 m. β 1H diversity exhibits no evidence of regional differences. Instead, higher values at shallower depths are observed worldwide. At depths of >1500 m the average β 1H is zero, indicating stasis or no biodiversity gradient. The difference in β 1H -diversity explains why, despite species richness often being greater per sample at deeper depths, the total number of species is greater at shallower depths. The greater number of communities and higher rate of evolution resulting in shorter species durations at shallower depths is also consistent with higher β 1H values.

Arctic Ocean;Gulf Of Mexico;Norwegian Sea;South At↗

USGS2004

Population structure and inbreeding vary with successional stage in created Spartina alterniflora marshes

Recruitment patterns in clonal plant populations are predicted to vary with seed dispersal capability and disturbance regime, such that species with small, widely dispersed seeds will become increasingly dominated by vegetative recruitment on disturbed areas following early colonization. Subsequent mortality due to competitive or stochastic effects is then predicted to cause a gradual decline in both clonal diversity and the ability of surviving clones to avoid geitonogamous mating and possible inbreeding depression. We tested predictions of these hypotheses by comparing four adjacent populations of the salt marsh plant, Spartina alterniflora, ranging in age from 2 to ∼50 yr, by measuring fine‐scale genetic structure at the level of both ramets and genets, and the rate of inbreeding. For this purpose, we sampled maternal tissue and seeds from discrete patches in the field and then genotyped both maternal and seedling tissue (germinated in a growth chamber) using standard molecular protocols. As predicted, we observed an increase in clonal diversity (measured as the complement of the Simpson Index corrected for finite sample sizes, 1 − D ) up to a maximum of 0.71 within 3‐m 2 patches at 16 yr, declining to 0.55 by ∼50 yr. Local recruitment of seedlings was evident as genetic structure occurring at the level of patches, as measured by the fixation index, θ, which was inversely correlated with diversity ( R 2 > 0.90 at all patch scales). Outcrossing rates were positively associated with clonal diversity, with the highest level (89%) at an intermediate level of 1 − D. The greatest selfing (32%) occurred in young (2‐yr‐old) patches with low diversity. Biparental inbreeding was minimal in all populations, never exceeding 1%. Inbreeding depression was inferred to be severe, as evidenced by near‐zero adult inbreeding coefficients. These results suggest a possible fitness trade‐off between clonal growth and the opportunity for outcrossing. We recommend that restoration plantings of clonal species with limited sexual recruitment capabilities should be designed to ensure adequate clonal diversity for the avoidance of inbreeding and the ability to adapt to subsequent environmental disturbances.

Louisiana↗

USGS2016

The role of competition – colonization tradeoffs and spatial heterogeneity in promoting trematode coexistence

Competition – colonization tradeoffs occur in many systems, and theory predicts that they can strongly promote species coexistence. However, there is little empirical evidence that observed competition – colonization tradeoffs are strong enough to maintain diversity in natural systems. This is due in part to a mismatch between theoretical assumptions and biological reality in some systems. We tested whether a competition – colonization tradeoff explains how a diverse trematode guild coexists in California horn snail populations, a system that meets the requisite criteria for the tradeoff to promote coexistence. A field experiment showed that subordinate trematode species tended to have higher colonization rates than dominant species. This tradeoff promoted coexistence in parameterized models but did not fully explain trematode diversity and abundance, suggesting a role of additional diversity maintenance mechanisms. Spatial heterogeneity is an alternative way to promote coexistence if it isolates competing species. We used scale transition theory to expand the competition – colonization tradeoff model to include spatial variation. The parameterized model showed that spatial variation in trematode prevalence did not isolate most species sufficiently to explain the overall high diversity, but could benefit some rare species. Together, the results suggest that several mechanisms combine to maintain diversity, even when a competition – colonization tradeoff occurs.

Ecology↗

USGS1985

Environmental trends among Neogene benthic foraminifers at Deep Sea Drilling Project Site 548, Irish continental margin

An analysis of diversity and abundance trends among all benthic foraminiferal genera and species, and particularly among species of Bolivina, was carried out for 59 samples of Neogene sediment from DSDP-IPOD Site 548, Goban Spur. By correlating these census data with lithological, geophysical, geochemical, and other faunal and floral measurements in the same stratigraphic interval, a record of irregularly fluctuating cycles was compiled. We interpret them as indicators of relative sea level. High sea levels are characterized by pelagic sedimentation and by high generic and total species diversities. During low sea level, diversity values were lower, and the accumulation of terrigenous detritus was more prevalent at the site. A sequence recording five highstands and five lowstands is interrupted by four unconformities in a scenario remarkably similar to that postulated in the work of P. R. Vail and his colleagues. Bolivina species diversity also varied cyclically. We interpret diversity of Bolivina species as a measure of relative oxygen and nutrient content at the water/sediment interface; high diversity indicates the presence of an oxygen-minimum layer, accompanied by nutrient enrichment. Our data show that this property generally varied directly with sea level, but sometimes varied independently.

Initial reports of the Deep Sea Drilling Project↗