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USGS2011

Demographic analysis of Lost River sucker and shortnose sucker populations in Upper Klamath Lake, Oregon

We used 13 years (1995-2007) of capture-mark-recapture data to assess population dynamics of endangered Lost River suckers Deltistes luxatus and shortnose suckers Chasmistes brevirostris in Upper Klamath Lake, Oregon. The Cormack-Jolly-Seber method was used to estimate survival, and information theoretic modeling was used to assess variation due to time, gender, species, and spawning subpopulations. Length data were used to detect multiple year-class failures and events of high recruitment into adult spawning populations. Average annual survival probability was 0.88 for Lost River suckers and 0.76 for shortnose suckers. Mean life span estimates based on these survival rates indicated that Lost River suckers survived long enough on average to attempt reproduction eight times, whereas shortnose suckers only survived to spawn three to four times. Shortnose sucker survival was not only poor in years of fish kills (1995-1997) but also was low in years without fish kills (i.e., 2002 and 2004). This suggests that high mortality occurs in some years but is not necessarily associated with fish kills. Annual survival probabilities were not only different between the two species but also differed between two spawning subpopulations of Lost River suckers. Length composition data indicated that recruitment into spawning populations only occurred intermittently. Populations of both species transitioned from primarily old individuals with little size diversity and consistently poor recruitment in the late 1980s and early 1990s to mostly small, recruit-sized fish by the late 1990s. A better understanding of the factors influencing adult survival and recruitment into spawning populations is needed. Monitoring these vital parameters will provide a quantitative means to evaluate population status and assess the effectiveness of conservation and recovery efforts.

Transactions of the American Fisheries Society↗

USGS2011

Depth distribution dynamics of the sculpin community in Lake Michigan

Using data from our annual lakewide bottom trawl survey of Lake Michigan, we calculated the mean depths of capture for deepwater sculpin Myoxocephalus thompsonii and slimy sculpin Cottus cognatus for each combination of transect (Frankfort, Ludington, Saugatuck, and Manistique in Michigan, Waukegan in Illinois, and Port Washington and Sturgeon Bay in Wisconsin) and year (1973-2005). The mean depth of capture of both sculpin species significantly decreased during the recovery phase of the deepwater sculpin population at four of the transects but did not significantly change for either species at the other three transects during this time. During the postrecovery phase of the deepwater sculpin population, the mean depth of capture of deepwater sculpins significantly increased at six of the seven transects, whereas that for slimy sculpins significantly increased at only four of the seven transects. The mean depth of capture of deepwater sculpins was most strongly correlated with that of slimy sculpins at Frankfort (r = 0.73); the correlation was weakest at Manistique (r = 0.00). Long-term mean depths of capture (averaged over all years) for deepwater sculpins ranged from 90 to 108 m among the seven transects, whereas the long-term mean depths of capture for slimy sculpins ranged from 60 to 83 m. The long-term mean depth difference between the two species was least at Frankfort (21 m) and greatest at Manistique (38 m); at all seven transects, the mean depth difference was significantly greater than zero. We concluded that these two sculpin populations in Lake Michigan maintained some degree of spatial separation during 1973-2005.

Transactions of the American Fisheries Society↗

USGS2011

Early discrimination of Atlantic salmon smolt age: Time course of the relative effectiveness of body size and shape

The goal of this study was to test the relative effectiveness of morphological measurements and body size in predicting the smolt age of Atlantic salmon Salmo salar and to determine the time course of body size and shape differences between smolt ages. Analyses were conducted on age-0 to age-2 fish that were stocked as fry in the West Brook, Massachusetts and on laboratory-raised age-0 to age-1 fish. Using both body size and shape, we could partition the age-0 fish collected during fall into future early or late smolts, although the predictive ability of body shape was somewhat weaker than that of body size, especially in the laboratory. Classification success averaged 81% (size) and 79% (shape) in the field and 85% (size) and 73% (shape) in the laboratory. Despite differences in smolt age between the field and the laboratory, the relative timing of growth rate differences between future early and late smolts was similar in the field and the laboratory and peaked at 50-60% of development from fry to smolt. While body shape differed between early and late smolts well before smoltification, it did not improve classification based on size alone.

Transactions of the American Fisheries Society↗

USGS2011

Seasonal and diel movements of white sturgeon in the lower columbia river

Continuous monitoring of the movements and depths used by white sturgeon Acipenser transmontanus with acoustic telemetry technologies in the lower Columbia River provided information on diel and seasonal migrations, local movements, and site fidelity. White sturgeon moved to shallower water at night and showed greater activity, inferred from rates of movement, than during daytime. The extent of local movement within a season was variable among fish; some fish readily moved among habitats while the movements of others were more constrained. White sturgeon were absent from the study area (river kilometers 45-52) during winter and returned from upstream during the spring, confirming an upstream seasonal migration in the fall and downstream migration in spring. The return of individual fish and reoccupation of areas previously inhabited showed that some white sturgeon exhibit site fidelity. This work shows that studies seeking to characterize habitat for white sturgeon need to be cognizant of diel migrations and site fidelity. We urge caution in the use of limited fish location data to describe habitats if diel activities and fine-scale movements are not known.

Transactions of the American Fisheries Society↗

USGS2011

How systematic age underestimation can impede understanding of fish population dynamics: Lessons learned from a Lake Superior cisco stock

Systematic underestimation of fish age can impede understanding of recruitment variability and adaptive strategies (like longevity) and can bias estimates of survivorship. We suspected that previous estimates of annual survival ( S ; range = 0.20-0.44) for Lake Superior ciscoes Coregonus artedi developed from scale ages were biased low. To test this hypothesis, we estimated the total instantaneous mortality rate of adult ciscoes from the Thunder Bay, Ontario, stock by use of cohort-based catch curves developed from commercial gill-net catches and otolith-aged fish. Mean S based on otolith ages was greater for adult females (0.80) than for adult males (0.75), but these differences were not significant. Applying the results of a study of agreement between scale and otolith ages, we modeled a scale age for each otolith-aged fish to reconstruct catch curves. Using modeled scale ages, estimates of S (0.42 for females, 0.36 for males) were comparable with those reported in past studies. We conducted a November 2005 acoustic and midwater trawl survey to estimate the abundance of ciscoes when the fish were being harvested for roe. Estimated exploitation rates were 0.085 for females and 0.025 for males, and the instantaneous rates of fishing mortality were 0.089 for females and 0.025 for males. The instantaneous rates of natural mortality were 0.131 and 0.265 for females and males, respectively. Using otolith ages, we found that strong year-classes at large during November 2005 were caught in high numbers as age-1 fish in previous annual bottom trawl surveys, whereas weak or absent year-classes were not. For decades, large-scale fisheries on the Great Lakes were allowed to operate because ciscoes were assumed to be short lived and to have regular recruitment. We postulate that the collapse of these fisheries was linked in part to a misunderstanding of cisco biology driven by scale-ageing error.

Thunder Bay↗

USGS2011

Olfactory sensitivity of Pacific Lampreys to lamprey bile acids

Pacific lampreys Lampetra tridentata are in decline throughout much of their historical range in the Columbia River basin. In support of restoration efforts, we tested whether larval and adult lamprey bile acids serve as migratory and spawning pheromones in adult Pacific lampreys, as they do in sea lampreys Petromyzon marinus . The olfactory sensitivity of adult Pacific lampreys to lamprey bile acids was measured by electro-olfactogram recording from the time of their capture in the spring until their spawning in June of the following year. As controls, we tested L-arginine and a non-lamprey bile acid, taurolithocholic acid 3-sulfate (TLS). Migrating adult Pacific lampreys were highly sensitive to petromyzonol sulfate (a component of the sea lamprey migratory pheromone) and 3-keto petromyzonol sulfate (a component of the sea lamprey sex pheromone) when first captured. This sensitivity persisted throughout their long migratory and overwinter holding period before declining to nearly unmeasurable levels by the time of spawning. The absolute magnitudes of adult Pacific lamprey responses to lamprey bile acids were smaller than those of the sea lamprey, and unlike the sea lamprey, the Pacific lamprey did not appear to detect TLS. No sexual dimorphism was noted in olfactory sensitivity. Thus, Pacific lampreys are broadly similar to sea lampreys in showing sensitivity to the major lamprey bile acids but apparently differ in having a longer period of sensitivity to those acids. The potential utility of bile acid-like pheromones in the restoration of Pacific lampreys warrants their further investigation in this species.

Oregon, Washington↗

USGS2011

Distribution and habitat associations of radio-tagged adult Lost River suckers and shortnose suckers in Upper Klamath Lake, Oregon

Radiotelemetry was used to investigate the summer distribution and diel habitat associations of endangered adult Lost River suckers Deltistes luxatus and shortnose suckers Chasmistes brevirostris in northern Upper Klamath Lake, Oregon. From 2002 to 2004, Lost River and shortnose suckers were tracked by boat, and water depth and water quality were measured at each fish location. A series of water quality monitors were deployed in northern Upper Klamath Lake to provide temporal information on ambient temperature, pH, and dissolved oxygen, and water samples were collected to assess chlorophyll a concentration. Suckers moved into northern Upper Klamath Lake during June and began to leave in late September each year. Kernel density estimates revealed differences in the distribution in the northern portion of Upper Klamath Lake in 2002 and 2004. In 2003, however, both Lost River and shortnose suckers were commonly located within and offshore from Pelican Bay, a shallow (1.0-2.0 m), groundwater-influenced area of Upper Klamath Lake. This was especially obvious beginning in late July of 2003, concurrent with reduced dissolved oxygen levels (<4.0 mg/L) in the northern portion of Upper Klamath Lake that resulted from a die-off of the cyanobacterium Aphanizomenon flos-aquae . Both Lost River and shortnose suckers were generally associated with water depths greater than the mean depth (2.8 m) of northern Upper Klamath Lake. Evidence ratios did not suggest diel differences in depth, temperature, dissolved oxygen, or pH at sucker locations. Both Lost River and shortnose suckers generally occupied depths greater than 2.0 m, except when suckers sought refuge in Pelican Bay during periods of poor water quality. Despite the potential for increased avian predation, suckers appeared to benefit from moving into Pelican Bay rather than staying in areas where dissolved oxygen was low. Pelican Bay appears to be an important refugium and thus may be important for sucker conservation.

Oregon↗

USGS2011

Evolutionary relationships among sympatric life history forms of Dolly Varden inhabiting the landlocked Kronotsky Lake, Kamchatka, and a neighboring anadromous population

We investigated the evolutionary relationships among five sympatric morphs of Dolly Varden Salvelinus malma (white, Schmidti, longhead, river, and dwarf) inhabiting landlocked Kronotsky Lake on the Kamchatka Peninsula, Russia, and an anadromous population below the barrier waterfall on the outflowing Kronotsky River. Morphological analyses indicated phenotypic differentiation corresponding to preferred habitat, the longhead (a limnetic piscivorous morph) having a fusiform body, long jaw, and short fins and the Schmidti (a benthic morph) having a robust body, small jaw, and long fins. Analysis of molecular variance among the Kronotsky Lake morphs indicated that contemporary gene flow is restricted both among morphs within locations and among locations within morphs. Gene flow from Kronotsky Lake into the anadromous population also appears to be restricted. Our findings indicate that there are two divergent evolutionary lineages, one consisting of the white, Schmidti, river, and dwarf morphs and the other of the longhead morph and the anadromous population, which suggests that Kronotsky Lake was subject to separate waves of immigration. The Kronotsky Lake Dolly Varden morphs may represent an example of ecological speciation in progress, and we present a working hypothesis for the diversification of morphs within Kronotsky Lake.

Transactions of the American Fisheries Society↗

USGS2011

Water velocity, turbulence, and migration rate of subyearling fall Chinook salmon in the free-flowing and impounded Snake River

We studied the migratory behavior of subyearling fall Chinook salmon Oncorhynchus tshawytscha in free-flowing and impounded reaches of the Snake River to evaluate the hypothesis that velocity and turbulence are the primary causal mechanisms of downstream migration. The hypothesis states that impoundment reduces velocity and turbulence and alters the migratory behavior of juvenile Chinook salmon as a result of their reduced perception of these cues. At a constant flow (m3 /s), both velocity (km/d) and turbulence (the SD of velocity) decreased from riverine to impounded habitat as cross-sectional areas increased. We found evidence for the hypothesis that subyearling Chinook salmon perceive velocity and turbulence cues and respond to these cues by varying their behavior. The percentage of the subyearlings that moved faster than the average current speed decreased as fish made the transition from riverine reaches with high velocities and turbulence to upper reservoir reaches with low velocities and turbulence but increased to riverine levels again as the fish moved further down in the reservoir, where velocity and turbulence remained low. The migration rate (km/d) decreased in accordance with longitudinal reductions in velocity and turbulence, as predicted by the hypothesis. The variation in migration rate was better explained by a repeatedmeasures regression model containing velocity (Akaike’s information criterion ¼ 1,769.0) than a model containing flow (2,232.6). We conclude that subyearling fall Chinook salmon respond to changes in water velocity and turbulence, which work together to affect the migration rate.

Transactions of the American Fisheries Society↗

USGS2011

Linking habitat quality with trophic performance of steelhead along forest gradients in the South Fork Trinity River Watershed, California

We examined invertebrate prey, fish diet, and energy assimilation in relation to habitat variation for steelhead Oncorhynchus mykiss (anadromous rainbow trout) and rainbow trout in nine low-order tributaries of the South Fork Trinity River, northern California. These streams spanned a range of environmental conditions, which allowed us to use bioenergetics modeling to determine the relative effects of forest cover, stream temperature, season, and fish age on food consumption and growth efficiency. Evidence of seasonal shifts in reliance on aquatic versus terrestrial food sources was detected among forest cover categories and fish ages, although these categories were not robust indicators of O. mykiss condition and growth efficiency. Consumption estimates were generally less than 20% of maximum consumption, and fish lost weight in some streams during summer low-flow conditions when stream temperatures exceeded 15°C. Current 100-year climate change projections for California threaten to exacerbate negative growth patterns and may undermine the productivity of this steelhead population, which is currently not listed as endangered or threatened. To demonstrate the potential effect of global warming on fish growth, we ran three climate change scenarios in two representative streams. Simulated temperature increases ranging from 1.4°C to 5.5°C during the summer and from 1.5°C to 2.9C during the winter amplified the weight loss; estimated average growth for age-1 fish was 0.4–4.5 times lower than normal (low to high estimated temperature increase) in the warm stream and 0.05–0.8 times lower in the cool stream. We conclude that feeding rate and temperature during the summer currently limit the growth and productivity of steelhead and rainbow trout in low-order streams in the South Fork Trinity River basin and predict that climate change will have detrimental effects on steelhead growth as well as on macroinvertebrate communities and stream ecosystems in general.

Transactions of the American Fisheries Society↗

USGS2011

Balancing aquatic habitat fragmentation and control of invasive species: Enhancing selective fish passage at sea lamprey control barriers

Barriers to prevent spawning migrations of sea lampreys Petromyzon marinus remain an important component of an integrated sea lamprey management program in the Laurentian Great Lakes. Concerns about effects on nontarget fishes have led to the construction of specially designed vertical-slot trap-and-sort fishways to mitigate potential barrier effects. To improve passage at these fishways, we used passive integrated transponder technology to assess the performance of two fishways located on low-head sea lamprey barriers. Fishways on the Big Carp River (which flows into Lake Superior) and Cobourg Brook (which flows into Lake Ontario) were assessed for attraction efficiency, trap attraction and retention, and passage efficiency. Based on the results of these assessments, fishways were modified by increasing the trap volume and altering the funnel characteristics to reduce escapement from the trap and then reassessed. Attraction efficiency for all tagged fish was high (≥80%) at both sites in all years. Fishway modifications improved passage from 35% in 2003 to 88% and 64% in 2004 and 2005, respectively, at the Big Carp River. As expected, white suckers Catostomus commersonii , an obligate migrant, had higher attraction and passage efficiency, fewer passage attempts, and shorter migration delay than did rock bass Ambloplites rupestris , a facultative migrant. No improvements were seen at Cobourg Brook, where passage efficiency remained low (7% in 2003, 10% in 2005), probably because of the loss of attraction flow. At both fishways, individual fish averaged 3-10 attempts to pass through the fishways and had their migrations delayed 1-2 weeks. The observed improvements to the Big Carp River fishway, which resulted in high fishway attraction and passage rates for white suckers, suggest that vertical-slot fishways can help mitigate the effects of low-head barriers for some species. Our study provides a rigorous quantifiable approach to assessing fishway performance that can be employed widely and successfully to assess initial fishway design and subsequent modifications.

Big Carp River, Cobourg Brook↗

USGS2011

Reassessment of the predatory effects of rainbow smelt on ciscoes in Lake Superior

Evidence from small lakes suggests that predation on larval ciscoes Coregonus artedi by nonnative rainbow smelt Osmerus mordax can lead to cisco suppression or extirpation. However, evidence from larger lakes has led to equivocal conclusions. In this study, we examine the potential predation effects of rainbow smelt in two adjacent but contrasting embayments in Lake Superior (Thunder and Black bays, Ontario). During May 2006, we sampled the ichthyoplankton, pelagic fish communities, and diet composition of rainbow smelt in both bays. Using acoustics and midwater trawling, we estimated rainbow smelt densities to be 476 ± 34/ha (mean ± SE) in Thunder Bay and 3,435 ± 460/ha in Black Bay. We used a bioenergetics model to estimate the proportion of cisco larvae consumed by rainbow smelt. Our results suggest that predation by rainbow smelt accounts for 15–52% and 37–100% of the mortality of larval ciscoes in Thunder and Black bays, respectively, depending on the predator feeding rate and the scale of predator–prey overlap. We also examined the sensitivity of past conclusions (based on 1974 field collections) to assumptions of temporal overlap between rainbow smelt and larval ciscoes and estimates of rainbow smelt abundance derived from bottom trawl samples. After adjusting these parameters to reflect current understanding, we found that the previous predation estimates may have been conservative. We conclude that rainbow smelt may have been a more important contributor to the demise and slow recovery of ciscoes in Lake Superior than previously thought.

Lake Superior↗

USGS2011

Predictive models for fish assemblages in eastern USA streams: implications for assessing biodiversity

Management and conservation of aquatic systems require the ability to assess biological conditions and identify changes in biodiversity. Predictive models for fish assemblages were constructed to assess biological condition and changes in biodiversity for streams sampled in the eastern United States as part of the U.S. Geological Survey's National Water Quality Assessment Program. Separate predictive models were developed for northern and southern regions. Reference sites were designated using land cover and local professional judgment. Taxonomic completeness was quantified based on the ratio of the number of observed native fish species expected to occur to the number of expected native fish species. Models for both regions accurately predicted fish species composition at reference sites with relatively high precision and low bias. In general, species that occurred less frequently than expected (decreasers) tended to prefer riffle areas and larger substrates, such as gravel and cobble, whereas increaser species (occurring more frequently than expected) tended to prefer pools, backwater areas, and vegetated and sand substrates. In the north, the percentage of species identified as increasers and the percentage identified as decreasers were equal, whereas in the south nearly two-thirds of the species examined were identified as decreasers. Predictive models of fish species can provide a standardized indicator for consistent assessments of biological condition at varying spatial scales and critical information for an improved understanding of fish species that are potentially at risk of loss with changing water quality conditions.

Transactions of the American Fisheries Society↗

USGS2011

Variable responses of fish assemblages, habitat, and stability to natural-channel-design restoration in Catskill Mountain streams

Natural-channel-design (NCD) restorations were recently implemented within large segments of five first- and second-order streams in the Catskill Mountains of New York in an attempt to increase channel stability, reduce bed and bank erosion, and sustain water quality. In conjunction with these efforts, 54 fish and habitat surveys were done from 1999 to 2007 at six restored reaches and five stable control reaches to evaluate the effects of NCD restoration on fish assemblages, habitat, and bank stability. A before–after–control–impact study design and two-factor analysis of variance were used to quantify the net changes in habitat and fish population and community indices at treatment reaches relative to those at unaltered control reaches. The density and biomass of fish communities were often dominated by one or two small prey species and no or few predator species before restoration and by one or more trout (Salmonidae) species after restoration. Significant increases in community richness (30%), diversity (40%), species or biomass equitability (32%), and total biomass (up to 52%) in at least four of the six restored reaches demonstrate that NCD restorations can improve the health and sustainability of fish communities in geomorphically unstable Catskill Mountain streams over the short to marginally long term. Bank stability, stream habitat, and trout habitat suitability indices (HSIs) generally improved significantly at the restored reaches, but key habitat features and trout HSIs did not change or decreased at two of them. Fish communities and trout populations at these two reaches were not positively affected by NCD restorations. Though NCD restorations often had a positive effect on habitat and fish communities, our results show that the initial habitat conditions limit the relative improvements than can be achieved, habitat quality and stability do not necessarily respond in unison, and biotic and abiotic responses cannot always be generalized.

New York↗

USGS2011

Effects of natural-channel-design restoration on habitat quality in Catskill Mountain streams, New York

Stream restoration has received much attention in recent years, yet there has been little effort to evaluate its impacts on physical habitat, stability, and biota. A popular but controversial stream restoration approach is natural channel design (NCD), which cannot be adequately evaluated without a long-term, independent assessment of its effects on stream habitat. Six reaches of five Catskill Mountain streams in southeastern New York were restored during 2000–2003 following NCD techniques to decrease bed and bank degradation, decrease sediment loads, and improve water quality. Habitat surveys were conducted during summer low flows from 2001 to 2007. The effects of the NCD projects on stream condition were assessed via a before–after–control–impact study design to quantify the net changes in stream and bank habitat variables relative to those in unaltered control reaches. Analysis of variance tests of three different measures of bank stability show that on average stream stability increased at treatment sites for 2–5 years after restoration. Mean channel depth, thalweg depth, and the pool–riffle ratio generally increased, whereas mean channel width, percent streambank coverage by trees, and shade decreased. Habitat suitability indices for local salmonid species increased at four of six reaches after restoration. The changes in channel dimensions rendered them generally more characteristic of stabler stream forms in the given valley settings. Although these studies were done relatively soon after project completion, our findings demonstrate that habitat conditions can be improved in degraded Catskill Mountain streams through NCD restoration.

New York↗

USGS2011

Lakewide estimates of alewife biomass and Chinook salmon abundance and consumption in Lake Ontario, 1989–2005: implications for prey fish sustainability

Stocking levels of Chinook salmon Oncorhynchus tshawytscha for Lake Ontario have been highly controversial since the early 1990s, largely because of uncertainties about lakewide abundance and rates of prey consumption. Previous estimates have focused on years before 1995; since then, however, the Lake Ontario ecosystem has undergone substantial changes, and there is new evidence of extensive natural recruitment. Presented here are new abundance estimates of Chinook salmon and alewives Alosa pseudoharengus in Lake Ontario and a reevaluation of the potential risk of alewife population collapse. We found that Lake Ontario has been supporting, on average (1989–2005), 1.83 × 10 6 (range, 1.08 × 10 6 to 3.24 × 10 6 ) Chinook salmon of ages 1–4, amounting to a mean annual biomass of 11.33 × 10 3 metric tons (range, 5.83 × 10 3 to 23.04 × 10 3 metric tons). During the same period (1989–2005), the lake supported an alewife biomass of 173.66 × 103 metric tons (range, 62.37 × 10 3 to 345.49 × 10 3 metric tons); Chinook salmon of ages 1–4 consumed, on average, 22% (range, 11–44%) of the alewife biomass annually. Because our estimates probably underestimate total consumption and because Chinook salmon are only one of several salmonine species that depend on alewives, predation pressure on the Lake Ontario alewife population may be high enough to raise concerns about long-term stability of this predator–prey system.

Lake Ontario↗

USGS2011

Seasonal use of a New England estuary by foraging contingents of migratory striped bass

Using acoustic telemetry on migratory striped bass Morone saxatilis in Plum Island Estuary (PIE), Massachusetts, we found that striped bass (335–634 mm total length) tagged in the spring and summer of 2005 ( n = 14) and 2006 ( n = 46) stayed in the estuary for an average of 66.0 d in 2005 and 72.2 d in 2006. Striped bass spent the most time in two specific reaches: middle Plum Island Sound and lower Rowley River. In both years, three different use-groups of striped bass were observed in PIE. Short-term visitors ( n = 24) stayed in the estuary only briefly (range = 5–20 d). Two groups of seasonal residents stayed for more than 30 d, either in the Rowley River ( n = 14) or in Plum Island Sound ( n = 22). Within PIE, the two seasonal-resident use-groups may be foraging contingents that learn how to feed efficiently in specific parts of the estuary. These distinct within-estuary use patterns could have different implications for striped bass condition and prey impact.

Massachusetts↗

USGS2011

Habitat suitability of the Carolina madtom, an imperiled, endemic stream fish

The Carolina madtom Noturus furiosus is an imperiled stream ictalurid that is endemic to the Tar and Neuse River basins in North Carolina. The Carolina madtom is listed as a threatened species by the state of North Carolina, and whereas recent distribution surveys have found that the Tar River basin population occupies a range similar to its historical range, the Neuse River basin population has shown recent significant decline. Quantification of habitat requirements and availability is critical for effective management and subsequent survival of the species. We investigated six reaches (three in each basin) to (1) quantify Carolina madtom microhabitat use, availability, and suitability; (2) compare suitable microhabitat availability between the two basins; and (3) examine use of an instream artificial cover unit. Carolina madtoms were located and their habitat was quantified at four of the six survey reaches. They most frequently occupied shallow to moderate depths of swift moving water over a sand substrate and used cobble for cover. Univariate and principal components analyses both showed that Carolina madtom use of instream habitat was selective (i.e., nonrandom). Interbasin comparisons suggested that suitable microhabitats were more prevalent in the impacted Neuse River basin than in the Tar River basin. We suggest that other physical or biotic effects may be responsible for the decline in the Neuse River basin population. We designed instream artificial cover units that were occupied by Carolina madtoms (25% of the time) and occasionally by other organisms. Carolina madtom abundance among all areas treated with the artificial cover unit was statistically higher than that in the control areas, demonstrating use of artificial cover when available. Microhabitat characteristics of occupied artificial cover units closely resembled those of natural instream microhabitat used by Carolina madtoms; these units present an option for conservation and restoration if increased management is deemed necessary. Results from our study provide habitat suitability criteria and artificial cover information that can inform management and conservation of the Carolina madtom.

Transactions of the American Fisheries Society↗