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USGS2001

Interactions between fire and invasive plants in temperate grasslands of North America

A substantial number of invasive grasses, forbs and woody plants have invaded temperate grasslands in North America. Among the invading species are winter annuals, biennials, cool-season perennials, warm-season perennials, vines, shrubs, and trees. Many of these species have been deliberately introduced and widely planted; some are still used for range improvement, pastures, lawns, and as ornamentals, though many are listed as state or federal noxious weeds. Others have been greatly facilitated by widespread land disturbance. Historically, fire has been a major selective force in the evolution of temperate grasslands. Further, prescribed fire is commonly used as a method of ecological management for native grassland communities as well as in conjunction with restoration efforts. Within this context, it is important to understand how invasive species will interact with natural and prescribed fire regimes. In this paper, we consider what is known about how exotic species that invade temperate grasslands relate to fire. The primary issues addressed for each species are (1) Does fire appear to enhance colonization? (2) To what degree does fire affect the survival of plants? (3) Are plants that are burned able to regrow following fire and, if so, how rapidly can they recover? (4) How important is competition with native species to the response to fire? and (5) What effect does an invasive species have on the characteristics of the fire regime? For many species, results are preliminary, incomplete, or inconsistent among studies. For this reason, many of the conclusions drawn for individual species must be considered preliminary. Based on analyses of individual species, a conceptual framework is presented for considering how invasive plants may interact with fire when they invade an ecosystem. The major categories of influences are the native community, the fire regime, growth conditions for both invasive and native species, and influences that disturbances, human impacts, and landscape characteristics have had in the past and will have in the future. The examples considered in this paper provide support for a few, tentative generalizations. First, among our current worst invaders of temperate grasslands, adaptation to fire is quite variable. Some species are not well adapted to burning and can be easily eliminated; other species are better adapted but can still be eliminated if fire occurs during periods of particular vulnerability and/or at high frequency. There is a set of species that is extremely well adapted to fire and will not be eliminated through burning alone. Second, competitive interactions with native species play a crucial role in the success of nonnative invaders. In cases where differential burn responses between invasive and native species can be exploited, and adequate populations of native dominant species are present, fire can sometimes tip the competitive balance away from invasives. Third, there are a few invasive species that have exceptional attributes and for which there are no easy solutions. The ability of cheatgrass ( Bromus tectorum ) to enhance fire, the ability of Chinese tallow ( Triadica sebifera ) to suppress fire, and the ability of leafy spurge ( Euphorbia esula ) to resprout from repeated injury make these species exceptional threats to native diversity. Finally, the available information for many invasive species is very incomplete, partic- ularly with regard to how fire affects competitive interactions with the native community. There is much more we need to know if we are to consistently predict how invasive species will respond to fire and how burning can best be used to manage for natural diversity.

Conference Paper↗

USGS2011

Heightened exposure to parasites favors the evolution of immunity in brood parasitic cowbirds

Immunologists and evolutionary biologists are interested in how the immune system evolves to fit an ecological niche. We studied the relationship between exposure to parasites and strength of immunity by investigating the response of two species of New World cowbirds (genus Molothrus , Icteridae), obligate brood parasites with contrasting life history strategies, to experimental arboviral infection. The South American shiny cowbird ( M. bonariensis ) is an extreme host - generalist that lays its eggs in the nests of >225 different avian species. The Central American bronzed cowbird ( M. aeneus ) is a relative host - specialist that lays its eggs preferentially in the nests of approximately 12 orioles in a single sister genus. West Nile virus provided a strong challenge and delineated immune differences between these species. The extreme host-generalist shiny cowbird, like the North American host-generalist, the brown-headed cowbird, showed significantly lower viremia to three arboviruses than related icterid species that were not brood parasites. The bronzed cowbird showed intermediate viremia. These findings support the interpretation that repeated exposure to a high diversity of parasites favors the evolution of enhanced immunity in brood parasitic cowbirds and makes them useful models for future studies of innate immunity.

Evolutionary Biology↗

USGS2013

Evolution of a reassortant North American gull influenza virus lineage: drift, shift and stability

Background: The role of gulls in the ecology of avian influenza (AI) is different than that of waterfowl. Different constellations of subtypes circulate within the two groups of birds and AI viruses isolated from North American gulls frequently possess reassortant genomes with genetic elements from both North America and Eurasian lineages. A 2008 isolate from a Newfoundland Great Black-backed Gull contained a mix of North American waterfowl, North American gull and Eurasian lineage genes. Methods: We isolated, sequenced and phylogenetically compared avian influenza viruses from 2009 Canadian wild birds. Results: We analyzed six 2009 virus isolates from Canada and found the same phylogenetic lineage had persisted over a larger geographic area, with an expanded host range that included dabbling and diving ducks as well as gulls. All of the 2009 virus isolates contained an internal protein coding set of genes of the same Eurasian lineage genes except PB1 that was from a North American lineage, and these genes continued to evolve by genetic drift. We show evidence that the 2008 Great Black-backed Gull virus was derived from this lineage with a reassortment of a North American PA gene into the more stable core set of internal protein coding genes that has circulated in avian populations for at least 2 years. From this core, the surface glycoprotein genes have switched several times creating H13N6, H13N2, and H16N3 subtypes. These gene segments were from North American lineages except for the H16 and N3 vRNAs. Conclusions: This process appears similar to genetic shifts seen with swine influenza where a stable "triple reassortant internal gene" core has circulated in swine populations with genetic shifts occurring with hemaggluttinin and neuraminidase proteins getting periodically switched. Thus gulls may serve as genetic mixing vessels for different lineages of avian influenza, similar to the role of swine with regards to human influenza. These findings illustrate the need for continued surveillance in gull and waterfowl populations, both on the Pacific and especially Atlantic coasts of North America, to document virus intercontinental movement and the role of gull species in the evolution and epidemiology of AI.

Virology Journal↗

USGS2011

Lineage diversification and morphological evolution in a large-scale continental radiation: The neotropical ovenbirds and woodcreepers (Aves: Furnariidae)

Patterns of diversification in species-rich clades provide insight into the processes that generate biological diversity. We tested different models of lineage and phenotypic diversification in an exceptional continental radiation, the ovenbird family Furnariidae, using the most complete species-level phylogenetic hypothesis produced to date for a major avian clade (97% of 293 species). We found that the Furnariidae exhibit nearly constant rates of lineage accumulation but show evidence of constrained morphological evolution. This pattern of sustained high rates of speciation despite limitations on phenotypic evolution contrasts with the results of most previous studies of evolutionary radiations, which have found a pattern of decelerating diversity-dependent lineage accumulation coupled with decelerating or constrained phenotypic evolution. Our results suggest that lineage accumulation in tropical continental radiations may not be as limited by ecological opportunities as in temperate or island radiations. More studies examining patterns of both lineage and phenotypic diversification are needed to understand the often complex tempo and mode of evolutionary radiations on continents.

Evolution↗

USGS2016

A long-term study of ecological impacts of river channelization on the population of an endangered fish: Lessons learned for assessment and restoration

Projects to assess environmental impact or restoration success in rivers focus on project-specific questions but can also provide valuable insights for future projects. Both restoration actions and impact assessments can become “adaptive” by using the knowledge gained from long-term monitoring and analysis to revise the actions, monitoring, conceptual model, or interpretation of findings so that subsequent actions or assessments are better informed. Assessments of impact or restoration success are especially challenging when the indicators of interest are imperiled species and/or the impacts being addressed are complex. From 1997 to 2015, we worked closely with two federal agencies to monitor habitat availability for and population density of Roanoke logperch ( Percina rex ), an endangered fish, in a 24-km-long segment of the upper Roanoke River, VA. We primarily used a Before-After-Control-Impact analytical framework to assess potential impacts of a river channelization project on the P. rex population. In this paper, we summarize how our extensive monitoring facilitated the evolution of our (a) conceptual understanding of the ecosystem and fish population dynamics; (b) choices of ecological indicators and analytical tools; and (c) conclusions regarding the magnitude, mechanisms, and significance of observed impacts. Our experience with this case study taught us important lessons about how to adaptively develop and conduct a monitoring program, which we believe are broadly applicable to assessments of environmental impact and restoration success in other rivers. In particular, we learned that (a) pre-treatment planning can enhance monitoring effectiveness, help avoid unforeseen pitfalls, and lead to more robust conclusions; (b) developing adaptable conceptual and analytical models early was crucial to organizing our knowledge, guiding our study design, and analyzing our data; (c) catchment-wide processes that we did not monitor, or initially consider, had profound implications for interpreting our findings; and (d) using multiple analytical frameworks, with varying assumptions, led to clearer interpretation of findings than the use of a single framework alone. Broader integration of these guiding principles into monitoring studies, though potentially challenging, could lead to more scientifically defensible assessments of project effects.

Water↗

USGS2017

Nest predation risk explains variation in avian clutch size

Questions about the ecological drivers of, and mechanistic constraints on, productivity have driven research on life-history evolution for decades. Resource availability and offspring mortality are considered among the 2 most important influences on the number of offspring per reproductive attempt. We used a factorial experimental design to manipulate food abundance and perceived offspring predation risk in a wild avian population (red-faced warblers; Cardellina rubrifrons ) to identify the mechanistic cause of variation in avian clutch size. Additionally, we tested whether female quality helped explain the extant variation in clutch size. We found no support for the Food Limitation or Female Quality Hypotheses, but we did find support for both predictions of the Nest Predation Risk Hypothesis. Females that experienced an experimentally heightened perception of offspring predation risk responded by laying a smaller clutch than females in the control group. Additionally, predation rates at artificial nests were highest where red-faced warbler clutch size was smallest (at high elevations). Life-history theory predicts that an individual should invest less in reproduction when high nest predation risk reduces the likely benefit from that nesting attempt and, indeed, we found that birds exhibit phenotypic plasticity in clutch size by laying fewer eggs in response to increasing nest predation risk.

Behavioral Ecology↗

USGS2024

Orthoptera-specific target enrichment (OR-TE) probes resolve relationships over broad phylogenetic scales

Phylogenomic data are revolutionizing the field of insect phylogenetics. One of the most tenable and cost-effective methods of generating phylogenomic data is target enrichment, which has resulted in novel phylogenetic hypotheses and revealed new insights into insect evolution. Orthoptera is the most diverse insect order within polyneoptera and includes many evolutionarily and ecologically interesting species. Still, the order as a whole has lagged behind other major insect orders in terms of transitioning to phylogenomics. In this study, we developed an Orthoptera-specific target enrichment (OR-TE) probe set from 80 transcriptomes across Orthoptera. The probe set targets 1828 loci from genes exhibiting a wide range of evolutionary rates. The utility of this new probe set was validated by generating phylogenomic data from 36 orthopteran species that had not previously been subjected to phylogenomic studies. The OR-TE probe set captured an average of 1037 loci across the tested taxa, resolving relationships across broad phylogenetic scales. Our detailed documentation of the probe design and bioinformatics process is intended to facilitate the widespread adoption of this tool.

Scientific Reports↗

USGS2010

Advances in the hydrogeochemistry and microbiology of acid mine waters

The last decade has witnessed a plethora of research related to the hydrogeochemistry and microbiology of acid mine waters and associated tailings and waste-rock waters. Numerous books, reviews, technical papers, and proceedings have been published that examine the complex bio-geochemical process of sulfide mineral oxidation, develop and apply geochemical models to site characterization, and characterize the microbial ecology of these environments. This review summarizes many of these recent works, and provides references for those investigating this field. Comparisons of measured versus calculated Eh and measured versus calculated pH for water samples from several field sites demonstrate the reliability of some current geochemical models for aqueous speciation and mass balances. Geochemical models are not, however, used to predict accurately time-dependent processes but to improve our understanding of these systems and to constrain possible processes that contribute to actual or potential water quality issues. Microbiological studies are demonstrating that there is much we have yet to learn about the types of different microorganisms and their function and ecology in mine-waste environments. A broad diversity of green algae, bacteria, archaea, yeasts, and fungi are encountered in acid mine waters, and a better understanding of their ecology and function may potentially enhance remediation possibilities as well as our understanding of the evolution of life.

International Geology Review↗

USGS2011

Stochastic population dynamics in populations of western terrestrial garter snakes with divergent life histories

Comparative evaluations of population dynamics in species with temporal and spatial variation in life‐history traits are rare because they require long‐term demographic time series from multiple populations. We present such an analysis using demographic data collected during the interval 1978–1996 for six populations of western terrestrial garter snakes ( Thamnophis elegans ) from two evolutionarily divergent ecotypes. Three replicate populations from a slow‐living ecotype, found in mountain meadows of northeastern California, were characterized by individuals that develop slowly, mature late, reproduce infrequently with small reproductive effort, and live longer than individuals of three populations of a fast‐living ecotype found at lakeshore locales. We constructed matrix population models for each of the populations based on 8–13 years of data per population and analyzed both deterministic dynamics based on mean annual vital rates and stochastic dynamics incorporating annual variation in vital rates. (1) Contributions of highly variable vital rates to fitness (λ s ) were buffered against the negative effects of stochastic variation, and this relationship was consistent with differences between the meadow (M‐slow) and lakeshore (L‐fast) ecotypes. (2) Annual variation in the proportion of gravid females had the greatest negative effect among all vital rates on λ s . The magnitude of variation in the proportion of gravid females and its effect on λ s was greater in M‐slow than L‐fast populations. (3) Variation in the proportion of gravid females, in turn, depended on annual variation in prey availability, and its effect on λ s was 4–23 times greater in M‐slow than L‐fast populations. In addition to differences in stochastic dynamics between ecotypes, we also found higher mean mortality rates across all age classes in the L‐fast populations. Our results suggest that both deterministic and stochastic selective forces have affected the evolution of divergent life‐history traits in the two ecotypes, which, in turn, affect population dynamics. M‐slow populations have evolved life‐history traits that buffer fitness against direct effects of variation in reproduction and that spread lifetime reproduction across a greater number of reproductive bouts. These results highlight the importance of long‐term demographic and environmental monitoring and of incorporating temporal dynamics into empirical studies of life‐history evolution.

California↗

USGS2019

Phenotypic plasticity or a reproductive dead end? Primnoa pacifica (Cnidaria: Alcyonacea) in the southeastern Alaska region

Red tree corals ( Primnoa pacifica ) are abundant in the eastern Gulf of Alaska, from the glacial fjords of Southeast Alaska where they emerge to as shallow as 6 m, to the continental shelf edge and seamounts where they are more commonly found at depths greater than 150 – 500 m. This keystone species forms large thickets, creating habitat for many associated species, including economically valuable fishes and crabs, and so are important benthic suspension feeders in this region. Though the reproductive periodicity of this species was reported in 2014 from a shallow fjord (Tracy Arm), this study examined reproductive ecologies from 8 sites – two within Glacier Bay National Park and Preserve, three on the continental shelf edge, one within Endicott Arm (Holkham Bay) and two time points from the Tracy Arm (Holkham Bay) study. Male reproductive traits were similar at all sites but there were distinct differences in oogenesis. Though per polyp fecundity mostly showed no significant difference between sites, there was a non-significant trend of increasing number of oocytes with depth. In addition, the average oocyte size from Tracy Arm (the shallowest site) was 105 μm, whereas from Shutter Ridge (one of the deepest sites) the average size was 309 μm. Moreover, the maximum oocyte size at Endicott Arm was 221 μm and at Tracy Arm was 802 μm (both shallow sites), whereas at Dixon Entrance (a deep site) it was 2120 μm, a difference not usually observed within a single species. We propose two theories to explain the observed differences, (a) this species shows great phenotypic plasticity in reproductive ecology, adjusting to different environmental variables based on energetic need and potentially demonstrating micro-evolution; or (b) the fjord sites are at a reproductive dead end, with the stress of shallow-water conditions effectively preventing gametogenesis reaching full potential and likely limiting successful reproductive events from occurring, at least on a regular basis.

Alaska↗

USGS1999

Le Conte's sparrows breeding in Conservation Reserve Program fields: precipitation and patterns of population change

The climate of the North American Great Plains is highly dynamic, with great year-to-year variability in precipitation and periodic, often extreme, wet and dry cycles (Bragg 1995). Drought is a major force of ecological disturbance on the Great Plains and has played a key role in directing the evolution of the grassland biota of this region (Knopf and Samson 1997). Although grassland birds may differ in their responses to enviromenental variations (Rotenberry and Wiens 1991), climatic variability and concomitant unpredictability of resources strongly influence populations of grassland birds across space and time (Wiens 1974, 1986; Cody 1985). Not surprisingly, breeding bird populations on the Great Plains are highly dynamic, exhibiting considerable annual variation in composition, abundance, and distribution (Johnson and Grier 1988, George et al. 1992, Zimmerman 1992, Igl and Johnson 1997). Recently, interest in grassland birds has increased with the recognition that many species are declining both continentally (Droege and Sauer 1994) and globally (Goriup 1988). Identification of the specific factors associated with grassland bird declines in North America, however, remains largely enigmatic (Herkert 1997), and it is complicated by the considerable annual fluctuations in grassland bird distribution and abundance (Igl and Johnson 1997). Although there is evidence that land-use changes on the breeding grounds may have contributed to grassland bird declines (e.g., Igl and Johnson 1997), there also is an indication that long-term drought conditions may have influenced recent population changes of some breeding birds on the Great Plains (Droege and Sauer 1989, Peterjohn and Sauer 1993, Bethke and Nudds 1995, Igl and Johnson 1997). Le Conte's Sparrow (Ammodramus leconteii) is a secretive grassland bird that breeds in central and southern Canada and the northcentral United States (Murray 1969). It winters primarily in the southern United States (Peterson 1980, 1990). Like populations of many grassland breeding birds in North America (Fretwell 1986, Igl and Johnson 1997), Le Conte's Sparrow populations exhibit numerical highs and lows depending on local moisture conditions (Peabody 1901, Stewart 1975, Knapton 1979, Zimmer 1979, Madden 1996). This observation, however, is based largely on anecdotal evidence or short-term observations. Long-term studies of Le Conte's Sparrow populations are limited. Le Conte's Sparrow is poorly represented on the North American Breeding Bird Survey (BBS) because of small sample sizes, poor coverage in the northern portion of its breeding range, and the species' furtive behavior (Sauer et al. 1995). Moreover, dramatic fluctuations in Le Conte's Sparrow abundance tend to obscure the species' long-term population trends on the BBS (Sauer et al. 1995). In this paper we examine long-term population changes of Le Conte's Sparrows breeding in perennial grassland fields enrolled in the Conservation Reserve Program (CRP) on the northern Great Plains. We discuss patterns of population change of Le Conte's Sparrows associated with changes in precipitation and moisture conditions.

Studies in Avian Biology↗

USGS2018

Ecological drought: Accounting for the non-human impacts of water shortage in the Upper Missouri Headwaters Basin, Montana, USA

Water laws and drought plans are used to prioritize and allocate scarce water resources. Both have historically been human-centric, failing to account for non-human water needs. In this paper, we examine the development of instream flow legislation and the evolution of drought planning to highlight the growing concern for the non-human impacts of water scarcity. Utilizing a new framework for ecological drought, we analyzed five watershed-scale drought plans in southwestern Montana, USA to understand if, and how, the ecological impacts of drought are currently being assessed. We found that while these plans do account for some ecological impacts, it is primarily through the narrow lens of impacts to fish as measured by water temperature and streamflow. The latter is typically based on the same ecological principles used to determine instream flow requirements. We also found that other resource plans in the same watersheds (e.g., Watershed Restoration Plans, Bureau of Land Management (BLM) Watershed Assessments or United States Forest Service (USFS) Forest Plans) identify a broader range of ecological drought risks. Given limited resources and the potential for mutual benefits and synergies, we suggest greater integration between various planning processes could result in a more holistic consideration of water needs and uses across the landscape.

Montana↗

USGS2019

Intra- and interspecific variation in production of bile acids that act as sex pheromones in lampreys

Pheromones are important sexual signals in most animals, but research into their evolution is largely biased toward insects. Lampreys are a jawless fish with a relatively well-understood pheromone communication system and offer a useful opportunity to study pheromone evolution in a vertebrate. Once sexually mature, male sea lamprey (Petromyzon marinus), and likely other lampreys, produce and release bile acids that act as sex pheromones. Spawning males do not feed and therefore produce bile acids primarily for sexual communication whereas larvae produce the same bile acids but for digestion, offering an opportunity to compare the evolution of bile acids produced for sexual versus nonsexual functions. We profiled eight pheromone-related bile acids in livers from larvae and males and determined the effect of life stage on intra- and interspecific variation in bile acid production. Our results indicate less variation among males than larvae within P. marinus but more variation among species for males than larvae. We postulate that bile acid production in males is shaped by directional or stabilizing selection that reduces variance within P. marinus and directional or disruptive selection that promotes diversification across species. Although our results offer support for a role of sexual selection in the evolution of a lamprey pheromones, they do not eliminate possible roles of other aspects of lamprey ecology.

Physiological and Biochemical Zoology↗

USGS2025

Introgression, phylogeography, and genomic species cohesion in the eastern North American white oak syngameon

Hybridization and interspecific gene flow play a substantial role in the evolution of plant taxa. The eastern North American white oak syngameon, a group of approximately 15 ecologically, morphologically and genomically distinguishable species, has long been recognised as a model system for studying introgressive hybridization in temperate trees. However, the prevalence, genomic context and environmental correlates of introgression in this system remain largely unknown. To assess introgression in the eastern North American white oak syngameon and population structure within the widespread Quercus macrocarpa , we conducted a rangewide survey of Q. macrocarpa and four sympatric eastern North American white oak species. Using a Hyb-Seq approach, we assembled a dataset of 3412 thinned single-nucleotide polymorphisms (SNPs) in 445 enriched target loci including 62 genes putatively associated with various ecological functions, as well as associated intronic regions and some off-target intergenic regions (not associated with the exons). Admixture analysis and hybrid class inference demonstrated species coherence despite hybridization and introgressive gene flow (due to backcrossing of F1s to one or both parents). Additionally, we recovered a genetic structure within Q. macrocarpa associated with latitude. Generalised linear mixed models (GLMMs) indicate that proximity to range edge predicts interspecific admixture, but rates of genetic differentiation do not appear to vary between putative functional gene classes. Our study suggests that gene flow between eastern North American white oak species may not be as rampant as previously assumed and that hybridization is most strongly predicted by proximity to a species' range margin.

Molecular Ecology↗

USGS1995

Growth and mortaility rates of larval American shad, Alosa sapidissima, at different salinities

The tolerance of post yolk-sac American shad Alosa sapidissima larvae to salinities typically seen in estuaries was assessed experimentally. Sixteen-day-old Hudson River (experiment I) and 35-d-old Delaware River (experiment II) larvae were held for 8 d and 9 d respectively in low (0–1‰), medium (9–11‰), and highly (19–20‰) brackish water, and mortality and growth rates were measured. Growth rates did not vary significantly among salinity treatments. Mortality in experiment I did not vary significantly among salinity treatments however, in experiment II, mortality was zero at 10‰ but higher and statistically indistinguishable between 0‰ and 20‰ In experiment II relative condition increased with salinity. These results imply that estuarine salinities neither depress growth rates nor elevate mortality rates of larval American shad when compared with freshwater conditions. We conclude that ecological factors other than the physiological effects of salinity have played more important roles in the evolution of the upriver spawning and nursery preference shown by this species.

Delaware, New Jersey, New York, Philadelphia↗

USGS2026

Relative influence of flow regime, natural and anthropogenic environment on multidimensional stream fish diversity

The flow regime is considered a ‘master variable’ in riverine ecology because it directly influences stream geomorphology and biological communities. However, other environmental and anthropogenic factors have direct and synergistic effects with flow on fish diversity, complicating estimates of the flow regime's true importance. Moreover, most flow-ecology studies focus only on taxonomic diversity (i.e., species), without considering functional (trait-focused) or phylogenetic (evolution-focused) dimensions of diversity. In this study, we used linear regression with variation partitioning to parse out the independent and shared roles of the flow regime, physical environmental factors (e.g., soil characteristics) and the anthropogenic environment (e.g., developed land cover) for structuring multidimensional diversity of 365 stream fish communities in two biogeographic regions across South Carolina, USA. These variables explained between 8% and 18% of total variation of the local diversity. The flow regime contributed to diversity in all cases, but frequently covaried with physical and/or anthropogenic environmental variables. This covariation indicated that the independent role of flow would have been inflated if other environmental variables were not considered. The three dimensions of stream fish diversity were weakly correlated with one another and were associated with different environmental variables, indicating that each of them represents unique and complimentary facets of fish diversity. Accordingly, only considering the independent effects of instream flow on fish diversity may miss meaningful interactions between the flow regime and the other components of the environment that influence biodiversity patterns, leading to over simplified flow–ecology relationships.

South Carolina↗

USGS2007

Southern California Bight 2003 Regional Monitoring Program: V. water quality

More than $30 million is expended annually on environmental monitoring in the Southern California Bight (SCB), yet only 5% of the Bight is monitored on an ongoing basis. Therefore, environmental managers in the SCB decided to expand their monitoring program and, starting in 1994, decided to conduct periodic regional assessments of ecosystem condition and assess the overall health of the SCB. Sixty-five different organizations collaborated in 2003 to create the third SCB Regional Monitoring Program (Bight '03). Bight '03 was designed to be integrated regional monitoring program that encompasses regulatory, academic, and non-governmental agencies. Bight '03 had three components: Coastal Ecology, Shoreline Microbiology, and Water Quality. This report addresses the purpose, approach, findings, and recommendations from the Water Quality component, which focused on contamination-laden stormwater runoff, in particularly its variability in time and space as well as its short-term ecological impacts. Specifically, the Bight '03 Water Quality component had three primary goals, the first of which was to described the temporal evolution of stormwater plumes produced by the major southern California rivers. Specifically, the study was intended to determine how far offshore the plumes extended, how rapidly they advected, how long before the plumes dispersed and how these properties differed among storms and river systems. The second goal was to describe how the physical properties (e.g., turbidity, temperature, salinity) of the plume related to biogeochemical and ecological properties that are of more direct concern to the water quality management community. Accomplished primarily through ship-based sampling of water quality parameters, this second goal was to describe how far offshore, and for how ;long after the storm, elevated bacterial concentrations, toxicity, and nutrients could be detected. Similar to the fist goal, the study also addressed how these answers differed among storms and river systems. The final goal was to determine whether relationships between environmental indicators derived from coincident satellite remote sensing and in situ data sets are sufficiently robust for remote sensing to become a routine water quality monitoring programs. Remote sensing data potentially provide coastal managers with synoptic near-real time regional information about prevailing ocean conditions and hazards that would complement existing field-based sampling protocols, but only if there is a thorough understanding of how to interpret and utilize the proxy measures, such as ocean color. The understanding of these priorities through Bight '03 sampling is intended to provide the basis for developing more efficient, widespread and coast-effective coastal ocean monitoring techniques. Water quality data were collected across eight major river systems within four geographic regions of southern California. Field measurements included the primary contaminants of interest, i.e., bacterial concentrations, water toxicity, and nutrients, as well as related parameters such as temperatures, salinity, total suspended solids, transmissivity, chlorophyll, and colored dissolved organic material (CDOM) concentrations. For each of the four major regions, i.e., Santa Clara/Ventura Rivers, Ballona Creek/Santa Monica Bay, San Pedro Shelf, and the San Diego, Tijuana Rivers, two stormwater events were sampled for up to three days by ship resulting in 574 water column CTD+ profiles and 705 discrete water samples during 36 ship-days. These data were analyzed in combination with MODIS ocean color satellite remote sensing, buoy meteorological observations, drifters, and HF radar current measurements to evaluate the dispersal patterns, dynamics, and impacts of the freshwater runoff plumes. Based on these data and resulting analyses, the principal conclusions were as follow: - Stormwater runoff turbidity plumes were found to be spatially extensive, covering up to 2500 km 2 within the Southern California Bight nearshore zone, and persisting over the entire duration of the post-storm sampling period (at least 3 days). - The spatial and temporal extent of the portion of the plume with contaminants was far less than that of the turbidity plume, typically representing <10% of its area (30-70% off Tijuana); however, with contaminant impacts generally greatly reduced or absent by the third or fourth day of sampling - Pseudo-nitzschia , a harmful algae that produces domoic acid, was found to be more abundant than previously reported. - Accurately describing stormwater runoff plumes requires a combination of in situ and remote sensing assessment tools, with satellite data providing valuable synoptic information. From these conclusions, the following recommendations are provided: - Future studies designed to describe stormwater plumes should include a combination of ship - and remote sensing-based methods. - CDOM is a good proxy of the freshwater runoff plume and should be added as a standard measurement parameter on water quality instrument packages. - Investigations are needed that assess on a local basis the spatial extent of ecological effects of stormwater plumes early in the storm, ideally accompanied by airborne imagery to provide improved temporal & spatial resolution, to fill in knowledge gaps. The next Bight regional monitoring program should focus on quantifying nutrient loadings and dynamics in association with stormwater runoff and other sources, and characterize their attendant ecosystem impacts such as phytoplankton blooms.

California↗

USGS2010

The Origins of C4 Grasslands: Integrating Evolutionary and Ecosystem Science

The evolution of the C 4 photosynthetic pathway from the ancestral C 3 pathway in grasses led to the establishment of grasslands in warm climates during the Late Miocene (8 to 3 million years ago). This was a major event in plant evolutionary history, and their high rates of foliage production sustained high levels of herbivore consumption. The past decade has seen significant advances in understanding C 4 grassland ecosystem ecology, and now a wealth of data on the geological history of these ecosystems has accumulated and the phylogeny of grasses is much better known. Edwards et al. (p. 587) review this multidisciplinary research area and attempt to synthesize emerging knowledge about the evolution of grass species within the context of plant and ecosystem ecology.

Science↗