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At least 793 records · Page 44Linked to original sources
USGS2002

Fish communities of the Sacramento River Basin: Implications for conservation of native fishes in the Central Valley, California

The associations of resident fish communities with environmental variables and stream condition were evaluated at representative sites within the Sacramento River Basin, California between 1996 and 1998 using multivariate ordination techniques and by calculating six fish community metrics. In addition, the results of the current study were compared with recent studies in the San Joaquin River drainage to provide a wider perspective of the condition of resident fish communities in the Central Valley of California as a whole. Within the Sacramento drainage, species distributions were correlated with elevational and substrate size gradients; however, the elevation of a sampling site was correlated with a suite of water-quality and habitat variables that are indicative of land use effects on physiochemical stream parameters. Four fish community metrics - percentage of native fish, percentage of intolerant fish, number of tolerant species, and percentage of fish with external anomalies - were responsive to environmental quality. Comparisons between the current study and recent studies in the San Joaquin River drainage suggested that differences in water-management practices may have significant effects on native species fish community structure. Additionally, the results of the current study suggest that index of biotic integrity-type indices can be developed for the Sacramento River Basin and possibly the entire Central Valley, California. The protection of native fish communities in the Central Valley and other arid environments continues to be a conflict between human needs for water resources and the requirements of aquatic ecosystems; preservation of these ecosystems will require innovative management strategies.

Environmental Biology of Fishes↗
USGS2014

Clinal variation or validation of a subspecies? A case study of the Graptemys nigrinoda complex (Testudines: Emydidae)

Widely distributed species often display intraspecific morphological variation due to the abiotic and biotic gradients experienced across their ranges. Historically, in many vertebrate taxa, such as birds and reptiles, these morphological differences within a species were used to delimit subspecies. Graptemys nigrinoda is an aquatic turtle species endemic to the Mobile Bay Basin. Colour pattern and morphological variability were used to describe a subspecies ( G. n. delticola ) from the lower reaches of the system, although it and the nominate subspecies also reportedly intergrade over a large portion of the range. Other researchers have suggested that these morphological differences merely reflect clinal variation. Our molecular data (mtDNA) did not support the existence of the subspecies, as the haplotypes were differentiated by only a few base pairs and one haplotype was shared between the putative subspecies. While there were significant morphological and pattern differences among putative specimens of G. n. nigrinoda, G. n. delticola and G. n. nigrinoda × delticola , these differences probably represent clinal variation as they were also related to environmental variables [i.e. cumulative drainage area and drainage (categorical)]. Specimens occupying slow-current, high-turbidity river reaches (e.g. the Tensaw River) exhibited greater relative carapace heights and more dark pigmentation, while specimens occupying fast-current, clearer rivers (e.g. the upper Alabama, Cahaba and Tallapoosa rivers) exhibited lower carapace heights and more yellow pigmentation. Given the absence of clear molecular and morphological differences that are related to drainage characteristics, we suggest that there is not sufficient evidence for the recognition of G. n. delticola as a distinct subspecies.

Alabama;Mississippi↗
USGS2014

Validation of adipose lipid content as a body condition index for polar bears

Body condition is a key indicator of individual and population health. Yet, there is little consensus as to the most appropriate condition index (CI), and most of the currently used CIs have not been thoroughly validated and are logistically challenging. Adipose samples from large datasets of capture biopsied, remote biopsied, and harvested polar bears were used to validate adipose lipid content as a CI via tests of accuracy, precision, sensitivity, biopsy depth, and storage conditions and comparisons to established CIs, to measures of health and to demographic and ecological parameters. The lipid content analyses of even very small biopsy samples were highly accurate and precise, but results were influenced by tissue depth at which the sample was taken. Lipid content of capture biopsies and samples from harvested adult females was correlated with established CIs and/or conformed to expected biological variation and ecological changes. However, lipid content of remote biopsies was lower than capture biopsies and harvested samples, possibly due to lipid loss during dart retrieval. Lipid content CI is a biologically relevant, relatively inexpensive and rapidly assessed CI and can be determined routinely for individuals and populations in order to infer large-scale spatial and long-term temporal trends. As it is possible to collect samples during routine harvesting or remotely using biopsy darts, monitoring and assessment of body condition can be accomplished without capture and handling procedures or noninvasively, which are methods that are preferred by local communities. However, further work is needed to apply the method to remote biopsies.

Ecology and Evolution↗
USGS2001

Aeolian dust in Colorado Plateau soils: Nutrient inputs and recent change in source

Aeolian dust (windblown silt and clay) is an important component in arid-land ecosystems because it may contribute to soil formation and furnish essential nutrients. Few geologic surfaces, however, have been characterized with respect to dust-accumulation history and resultant nutrient enrichment. We have developed a combination of methods to identify the presence of aeolian dust in arid regions and to evaluate the roles of this dust in ecosystem processes. Unconsolidated sandy sediment on isolated surfaces in the Canyonlands region of the Colorado Plateau differs greatly in mineralogical and chemical composition from associated bedrock, mainly aeolian sandstone. Detrital magnetite in the surficial deposits produces moderately high values of magnetic susceptibility, but magnetite is absent in nearby bedrock. A component of the surficial deposits must be aeolian to account for the abundance of magnetite, which formed originally in far-distant igneous rocks. Particle-size analysis suggests that the aeolian dust component is typically as much as 20–30%. Dust inputs have enriched the sediments in many elements, including P, Mg, Na, K, and Mo, as well as Ca, at sites where bedrock lacks calcite cement. Soil-surface biologic crusts are effective dust traps that apparently record a change in dust sources over the past several decades. Some of the recently fallen dust may result from human disturbance of land surfaces that are far from the Canyonlands, such as the Mojave Desert. Some land-use practices in the study area have the potential to deplete soil fertility by means of wind-erosion removal of aeolian silt. Many studies have addressed the presence of aeolian dust in soils and surficial deposits in deserts to provide important geologic and ecologic information bearing on landscape dynamics (1–16). From this body of work, we have improved understanding about: ( i ) current and past sources and flux of dust, hence changing conditions of dust emission; ( ii ) the genesis of desert soils; ( iii ) the influences of aeolian silt and clay on water-infiltration rates in soil; ( iv ) the evolution of desert surfaces (such as desert pavement) relevant to surface stability, as well as the distribution of surface and subsurface water; and ( v ) interrelations among aeolian dust, distribution of plants and soil crust, rain-water runoff, and productivity. Nevertheless, we lack fundamental knowledge about the accumulation history of aeolian dust on most landscapes and about how to discriminate between contributions from parent material and aeolian dust to the biotic system. Although many different methods provide clear evidence for aeolian input into soils (4, 6, 8, 9, 11, 13, 17, 18), ecosystem studies would benefit from rapid assessment of aeolian components in soils. Here we demonstrate that magnetic methods, which characterize the type and distribution of iron oxide minerals, can be applied to detect the presence of aeolian dust in young surficial sediments and soils over large arid-land areas. The magnetic results, combined with geochemical and textural analyses, form a basis for understanding the influence of fine-grained aeolian inputs on soil fertility of the central Colorado Plateau, Utah.

Utah↗
USGS2005

Hydrologic, water-quality, and biological assessment of Laguna de las Salinas, Ponce, Puerto Rico, January 2003-September 2004

The Laguna de Las Salinas is a shallow, 35-hectare, hypersaline lagoon (depth less than 1 meter) in the municipio of Ponce, located on the southern coastal plain of Puerto Rico. Hydrologic, water-quality, and biological data in the lagoon were collected between January 2003 and September 2004 to establish baseline conditions. During the study period, rainfall was about 1,130 millimeters, with much of the rain recorded during three distinct intense events. The lagoon is connected to the sea by a shallow, narrow channel. Subtle tidal changes, combined with low rainfall and high evaporation rates, kept the lagoon at salinities above that of the sea throughout most of the study. Water-quality properties measured on-site (temperature, pH, dissolved oxygen, specific conductance, and Secchi disk transparency) exhibited temporal rather than spatial variations and distribution. Although all physical parameters were in compliance with current regulatory standards for Puerto Rico, hyperthermic and hypoxic conditions were recorded during isolated occasions. Nutrient concentrations were relatively low and in compliance with current regulatory standards (less than 5.0 and 1.0 milligrams per liter for total nitrogen and total phosphorus, respectively). The average total nitrogen concentration was 1.9 milligrams per liter and the average total phosphorus concentration was 0.4 milligram per liter. Total organic carbon concentrations ranged from 12.0 to 19.0 milligrams per liter. Chlorophyll a was the predominant form of photosynthetic pigment in the water. The average chlorophyll a concentration was 13.4 micrograms per liter. Chlorophyll b was detected (detection limits 0.10 microgram per liter) only twice during the study. About 90 percent of the primary productivity in the Laguna de Las Salinas was generated by periphyton such as algal mats and macrophytes such as seagrasses. Of the average net productivity of 13.6 grams of oxygen per cubic meter per day derived from the diel study, the periphyton and macrophyes produced 12.3 grams per cubic meter per day; about 1.3 grams (about 10 percent) were produced by the phytoplankton (plant and algae component of plankton). The total respiration rate was 59.2 grams of oxygen per cubic meter per day. The respiration rate ascribed to the plankton (all organisms floating through the water column) averaged about 6.2 grams of oxygen per cubic meter per day (about 10 percent), whereas the respiration rate by all other organisms averaged 53.0 grams of oxygen per cubic meter per day (about 90 percent). Plankton gross productivity was 7.5 grams per cubic meter per day; the gross productivity of the entire community averaged 72.8 grams per cubic meter per day. Fecal coliform bacteria counts were generally less than 200 colonies per 100 milliliters; the highest concentration was 600 colonies per 100 milliliters.

Scientific Investigations Report↗
USGS2013

Influence of estuarine processes on spatiotemporal variation in bioavailable selenium

Dynamic processes (physical, chemical and biological) challenge our ability to quantify and manage the ecological risk of chemical contaminants in estuarine environments. Selenium (Se) bioavailability (defined by bioaccumulation), stable isotopes and molar carbon-tonitrogen ratios in the benthic clam Potamocorbula amurensis, an important food source for predators, were determined monthly for 17 yr in northern San Francisco Bay. Se concentrations in the clams ranged from a low of 2 to a high of 22 μg g -1 over space and time. Little of that variability was stochastic, however. Statistical analyses and preliminary hydrodynamic modeling showed that a constant mid-estuarine input of Se, which was dispersed up- and down-estuary by tidal currents, explained the general spatial patterns in accumulated Se among stations. Regression of Se bioavailability against river inflows suggested that processes driven by inflows were the primary driver of seasonal variability. River inflow also appeared to explain interannual variability but within the range of Se enrichment established at each station by source inputs. Evaluation of risks from Se contamination in estuaries requires the consideration of spatial and temporal variability on multiple scales and of the processes that drive that variability.

Marine Ecology Progress Series↗
USGS2021

Supporting the development and use of native plant materials for restoration on the Colorado Plateau (Fiscal Year 2020 Report)

A primary focus of the Colorado Plateau Native Plant Program (CPNPP) is to identify and develop appropriate native plant materials (NPMs) for current and future restoration projects. Multiple efforts have characterized the myriad challenges inherent in providing appropriate seed resources to enable effective, widespread restoration and have identified a broad suite of research activities to provide the information necessary to overcome those challenges (e.g., Plant Conservation Alliance 2015; Breed et al. 2018; Winkler et al. 2018). Many of the most complex information needs relate to identifying the appropriate sources of plant species that can successfully establish in dryland environments, like the Colorado Plateau, where precipitation is generally low and highly variable. Providing this information requires synergistic research efforts that build upon insight gained from earlier investigations. The U.S. Geological Survey (USGS) Southwest Biological Science Center’s (SBSC’s) research activities that supported CPNPP in FY20 followed the FY20 Statement of Work to support a research framework that is continually adapting based on the needs of the restoration community and results from previous investigations; the long-term research framework is outlined in the 2019-2023 5-Year Research Strategy (hereafter referred to as the 5-year plan). This research framework provides support for the National Seed Strategy for Rehabilitation and Restoration (Plant Conservation Alliance, 2015), Department of Interior Secretarial Order #3347 ( Conservation Stewardship and Outdoor Recreation ), and Bureau of Land Management Leadership Priority #1 ( Create a conservation stewardship legacy second only to Teddy Roosevelt ). Research activities in FY20 centered on landscape genomics, implementing a common garden experiment near Vernal, UT, conducting experimental treatments using the GRID (Germination for Restoration Information and Decision-making) framework, and collecting seeds and leaf tissues in the field in preparation for future experiments. These activities were supported by five biological science technicians. The SARS-CoV-2 pandemic delayed some aspects of the FY20 workplan, especially for contract laboratory services and the construction of the GRID garden in Flagstaff, AZ. However, goals were largely met, and the overall progress of research remains on track with respect to the 5-year plan. While Dr. Rob Massatti was the only scientist supported by the SBSC-CPNPP agreement in FY20, other scientists, including Drs. John Bradford, Seth Munson, Mike Duniway, Sasha Reed, Matt Jones, and Daniel Winkler, spent a considerable amount of time providing expertise and support for individual projects. Work activities performed in support of each goal are discussed in turn.

Arizona, Colorado, New Mexico, Utah↗
USGS2017

Evaluation of long-term trends in hydrologic and water-quality conditions, and estimation of water budgets through 2013, Chester County, Pennsylvania

An evaluation of trends in hydrologic and water quality conditions and estimation of water budgets through 2013 was done by the U.S. Geological Survey in cooperation with the Chester County Water Resources Authority. Long-term hydrologic, meteorologic, and biologic data collected in Chester County, Pennsylvania, which included streamflow, groundwater levels, surface-water quality, biotic integrity, precipitation, and air temperature were analyzed to determine possible trends or changes in hydrologic conditions. Statistically significant trends were determined by applying the Kendall rank correlation test; the magnitudes of the trends were determined using the Sen slope estimator. Water budgets for eight selected watersheds were updated and a new water budget was developed for the Marsh Creek watershed. An average water budget for Chester County was developed using the eight selected watersheds and the new Marsh Creek water budget. Annual and monthly mean streamflow, base flow, and runoff were analyzed for trends at 10 streamgages. The periods of record at the 10 streamgages ranged from 1961‒2013 to 1988‒2013. The only statistically significant trend for annual mean streamflow was for West Branch Brandywine Creek near Honey Brook, Pa. (01480300) where annual mean streamflow increased 1.6 cubic feet per second (ft 3 /s) per decade. The greatest increase in monthly mean streamflow was for Brandywine Creek at Chadds Ford, Pa. (01481000) for December; the increase was 47 ft 3 /s per decade. No statistically significant trends in annual mean base flow or runoff were determined for the 10 streamgages. The greatest increase in monthly mean base flow was for Brandywine Creek at Chadds Ford, Pa. (01481000) for December; the increase was 26 ft 3 /s per decade. The magnitude of peaks greater than a base streamflow was analyzed for trends for 12 streamgages. The period of record at the 12 stream gages ranged from 1912‒2012 to 2004–11. Fifty percent of the streamgages showed a small statistically significant increase in peaks greater than the base streamflow. The greatest increase was for Brandywine Creek at Chadds Ford, Pa. (01481000) during 1962‒2012; the increase was 1.8 ft 3 /s per decade. There were no statistically significant trends in the number of floods equal to or greater than the 2-year recurrence interval flood flow. Twenty‒one monitoring wells were evaluated for statistically significant trends in annual mean water level, minimum annual water level, maximum annual water level, and annual range in water-level fluctuations. For four wells, a small statistically significant increase in annual mean water level was determined that ranged from 0.16 to 0.7 feet per decade. There was poor or no correlation between annual mean groundwater levels and annual mean streamflow and base flow. No correlation was determined between annual mean groundwater level and annual precipitation. Despite rapid population growth and land-use change since 1950, there appears to have been little or no detrimental effects on groundwater levels in 21 monitoring wells. Long-term precipitation and temperature data were available from the West Chester (1893‒2013) and Phoenixville, Pa. (1915‒2013) National Oceanic and Atmospheric Administration (NOAA) weather stations. No statistically significant trends in annual mean precipitation or annual mean temperature were determined for either station. Both weather stations had a significant decrease in the number of days per year with precipitation greater than or equal to 0.1 inch. Annual mean minimum and maximum temperatures from the NOAA Southeastern Piedmont Climate Division increased 0.2 degrees Fahrenheit (F) per decade between 1896 and 2014. The number of days with a maximum temperature equal to or greater than 90 degrees F increased at West Chester and decreased at Phoenixville. No statistically significant trend was determined for annual snowfall amounts. Data from 1974 to 2013 for three stream water-quality monitors in the Brandywine Creek watershed were evaluated. The monitors are on the West Branch Brandywine Creek at Modena, Pa. (01480617), East Branch Brandywine Creek below Downingtown, Pa. (01480870), and Brandywine Creek at Chadds Ford, Pa. (01481000). Statistically significant upward trends were determined for annual mean specific conductance at all three stations, indicating the total dissolved solids load has been increasing. If the current trend continues, the annual mean specific conductance could almost double from 1974 to 2050. The increase in specific conductance likely is due to increases in chloride concentrations, which have been increasing steadily over time at all three stations. No correlation was found between monthly mean specific conductance and monthly mean streamflow or base flow. Statistically significant upward trends in pH were determined for all three stations. Statistically significant upward trends in stream temperature were determined for East Branch Brandywine Creek below Downingtown, Pa. (01480870) and Brandywine Creek at Chadds Ford, Pa. (01481000). The stream water-quality data indicate substantial increases in the minimum daily dissolved oxygen concentrations in the Brandywine Creek over time. The Chester County Index of Biotic Integrity (CC-IBI) determined for 1998‒2013 was evaluated for the five biological sampling sites collocated with streamgages. CC-IBI scores are based on a 0‒100 scale with higher scores indicating better stream quality. Statistically significant upward trends in the CC-IBI were determined for West Branch Brandywine Creek at Modena, Pa. (01480617) and East Branch Brandywine Creek below Downingtown, Pa. (01480870). No correlation was found between the CC-IBI and streamflow, precipitation, or stream specific conductance, pH, temperature, or dissolved oxygen concentration. A Chester County average water budget was developed using the nine estimated watershed water budgets. Average precipitation was 48.4 inches, and average streamflow was 21.4 inches. Average runoff and base flow were 8.3 and 13.1 inches, respectively, and average evapotranspiration and estimation of errors was 27.2 inches."

Pennsylvania↗
USGS2023

Long-term trends in Arctic riverine chemistry signal multi-faceted northern change

Rivers integrate processes occurring throughout their watersheds and are therefore sentinels of change across broad spatial scales. River chemistry also regulates ecosystem function across Earth’s land–ocean continuum, exerting control from the micro- (for example, local food web) to the macro- (for example, global carbon cycle) scale. In the rapidly warming Arctic, a wide range of processes—from permafrost thaw to biological uptake and transformation—might reasonably alter river water chemistry. Here we use data from major rivers that collectively drain two-thirds of the Arctic Ocean watershed to assess widespread change in biogeochemical function within the pan-Arctic basin from 2003 to 2019. While the oceanward flux of alkalinity and associated ions increased markedly over this time frame, nitrate and other inorganic nutrient fluxes declined. Fluxes of dissolved organic carbon showed no overall trend. This divergence in response indicates the perturbation of multiple processes on land, with implications for biogeochemical cycling in the coastal ocean. We anticipate that these findings will facilitate refinement of conceptual and numerical models of current and future functioning of Arctic coastal ecosystems and spur research on scale-dependent change across the river-integrated Arctic domain.

Arctic↗
USGS2008

Grazed riparian management and stream channel response in southeastern Minnesota (USA) streams

The U.S. Department of Agriculture-Natural Resources Conservation Service has recommended domestic cattle grazing exclusion from riparian corridors for decades. This recommendation was based on a belief that domestic cattle grazing would typically destroy stream bank vegetation and in-channel habitat. Continuous grazing (CG) has caused adverse environmental damage, but along cohesive-sediment stream banks of disturbed catchments in southeastern Minnesota, short-duration grazing (SDG), a rotational grazing system, may offer a better riparian management practice than CG. Over 30 physical and biological metrics were gathered at 26 sites to evaluate differences between SDG, CG, and nongrazed sites (NG). Ordinations produced with nonmetric multidimensional scaling (NMS) indicated a gradient with a benthic macroinvertebrate index of biotic integrity (IBI) and riparian site management; low IBI scores associated with CG sites and higher IBI scores associated with NG sites. Nongrazed sites were associated with reduced soil compaction and higher bank stability, as measured by the Pfankuch stability index; whereas CG sites were associated with increased soil compaction and lower bank stability, SDG sites were intermediate. Bedrock geology influenced NMS results: sites with carbonate derived cobble were associated with more stable channels and higher IBI scores. Though current riparian grazing practices in southeastern Minnesota present pollution problems, short duration grazing could reduce sediment pollution if managed in an environmentally sustainable fashion that considers stream channel response. ?? 2008 Springer Science+Business Media, LLC.

Environmental Management↗
USGS1973

Application of theory and research in fishery management of the Laurentian Great Lakes

The Great Lakes have a high potential for the conduct of research and useful application of research findings, but the history of the Great Lakes indicates that extensive research and intensive management have failed to prevent deterioration of the fisheries. At times the research was not done before a loss occurred, or did not provide the information needed to solve a problem, or was not interpreted to indicate a need for corrective action. Three examples are used to illustrate these problems: (1) Sea lamprey ( Petromyzon marinus ) research was not initiated until 50 years after the destructiveness of the sea lamprey was recognized, and control measures were not developed or applied until species most vulnerable to the lamprey had been greatly reduced or eliminated. (2) Most research on the alewife ( Alosa pseudoharengus ) has been directed toward determining why large numbers of alewives die during the spring and summer, but has not provided the information most urgently needed by management to use alewives to best advantage, or to reduce the biological or human problems that alewives cause. (3) After a study during 1926-30 to determine if pollution was affecting fish in Lake Erie, it was concluded that the detrimental effects of pollution in certain regions were offset by the benefits of enrichment in other areas, but managers were not warned that areas of pollution might expand, and eventually influence the entire lake. The Great Lakes ecosystem is complex and in a state of rapid change. Thus, the outcome from the application of theory is uncertain at best and there can be no assurance that the desired results will be attained. The programs for sea lamprey control and salmonid restoration are a current example of difficulty in application of theory in management. Superficially the sea lamprey appears to be under control and salmonids have been restored. The postcontrol abundance of sea lampreys, however, is equal to the abundance that caused the initial collapse of the lake trout ( Salvelinus namaycush ), and there is evidence that the damage lampreys are inflicting on lake trout is as heavy as it was in the precontrol period. Also, in the presence of an abundance of hatchery-reared salmonids, the lamprey is reproducing and thriving as well as or better than it did during its initial population explosion, and indications are that it will increase rather than decrease under the present method and level of control. Successful application of theory and research to fishery management has always been impeded by lack of continued and close coordination among some 30-40 state, provincial, and federal governmental units that have varying degrees of influence on fishery programs of the Great Lakes. Frequently agreements that have been reached among conservation agencies were not sustained by legislative units, or were nullified by organizational changes. As a result, conflicting approaches were sometimes taken by management agencies with jurisdiction in different areas of the same lake. Sustained and compatible management objectives and practices can, however, contribute to greater stability, and optimum usefulness and productivity.

Transactions of the American Fisheries Society↗
USGS2024

Integrated science for the study of microplastics in the environment—A strategic science vision for the U.S. Geological Survey

Executive Summary Evidence of the widespread occurrence of microplastics throughout our environment and exposure to humans and other organisms over the past decade has led to questions about the possibility of health hazards and mitigation of exposures. This document discusses nanoplastics as well as microplastics (referred to solely as microplastics); the microplastics have a range from 1 micrometer to 5 millimeters (1 μm–5 mm) in length, whereas the nanoplastics are less than 1 μm in length (sidebar ES1). A myriad of environmental exposure pathways with microplastics to humans and wildlife, including ingestion, inhalation, and bodily absorption, are likely to exist. A growing body of evidence has documented bioaccumulation of microplastics in tissues and organs of humans and wildlife, benthic community effects, and potential nutritional and reproductive effects in some wildlife species. Understanding if or when environmental exposures pose a health risk is complicated by the diversity of microplastic sizes, morphologies, polymer types, and chemicals added during manufacturing or sorbed from the environment; ongoing challenges in analytical methods used to detect, quantify, and characterize microplastics and associated chemicals in our ecosystems; and the fact that ecotoxicological studies regarding microplastics are still in their infancy. Therefore, the study of environmental exposures and potential related health hazards of microplastics to the public and wildlife is a One Health (sidebar ES2) research topic that necessitates integrated science approaches. A better understanding of the sources, pathways, fate, and biological effects of microplastics has become a priority of the Federal Government, State governments, Tribes, stakeholders, and the public. Examples of Federal and State microplasticfocused legislation and programs to prioritize microplastic research and reduction include the Federal Microbead-Free Waters Act of 2015, California Senate Bills 1422 and 1263 (2018), the U.S. Environmental Protection Agency (EPA) Trash Free Waters Program, the National Institute of Standards and Technology’s Microplastic and Nanoplastic Metrology project, and Minnesota’s microplastic project. With its unique expertise and capabilities, the U.S. Geological Survey (USGS) is well positioned to help fill some of the most important microplastic science gaps. This strategic science vision document for microplastics identifies current (2023) microplastic science gaps and prioritizes research relevant to the mission, expertise, and capabilities of the USGS. It is intended for USGS scientists and stakeholders to use as a starting point for planning, prioritizing, and designing collaborative environmental microplastic science. Many of the microplastic science gaps and priorities are scalable, from local to national, and thus, can be made commensurate with available funding and evolving analytical and field tools, laboratory capacity, and stakeholder needs. Current (2023) or future research by academia and other Federal or State agencies, and Tribes may be aimed at some of the same microplastic science gaps identified in this document. Therefore, this document can be used as an information resource to maximize strengths and capabilities and minimize redundancy in communication and collaboration.

Circular↗
USGS2011

Summary and anticipated responses to Elwha River dam removal: Chapter 9 in Coastal habitats of the Elwha River, Washington--biological and physical patterns and processes prior to dam removal

Starting in September 2011, the removal of two large dams on the Elwha River will begin an unprecedented river restoration project because of the size of the dams, the volume of sediment released, the pristine watershed upstream of the dam sites, and the potential for renewing salmon populations. Ecosystem studies of the Elwha watershed indicate that the effects of almost 100 years of damming are measurable and of consequence. These effects include smaller spawning salmon populations, massive sediment retention behind the dams, coarsening of the riverbed downstream of the dams, low nutrient concentrations in the river waters, and coastal erosion that has accelerated markedly with time. During and after the removal of these dams, the Elwha River and its ecosystems will be altered by a renewal of sediment discharge downstream of the dams and a reintroduction of salmon spawning upstream of the dams. This chapter summarizes the pre-dam and current state of the river and its coastal ecosystems, and describes the likely outcomes of river restoration on the Elwha River ecosystems.

Washington↗
USGS2020

Supporting the development and use of native plant materials for restoration on the Colorado Plateau (Fiscal Year 19 Report)

A primary focus of the Bureau of Land Management’s (BLM’s) Colorado Plateau Native Plant Program (CPNPP) is to identify and develop appropriate native plant materials (NPMs) for current and future restoration projects. Multiple efforts have characterized the myriad challenges inherent in providing appropriate seed resources to enable effective, widespread restoration and have identified a broad suite of research activities to provide the information necessary to overcome those challenges (e.g., Plant Conservation Alliance 2015; Breed et al. 2018; Winkler et al. 2018). Many of the most complex information needs relate to identifying the appropriate sources of plant species that can successfully establish in dryland environments, like the Colorado Plateau, where low and highly variable precipitation is standard. Providing this information requires synergistic research efforts in which results from earlier investigations inform the design of subsequent investigations. The U.S. Geological Survey Southwest Biological Science Center’s (SBSC’s) research activities in FY19 followed an FY19 Statement of Work to support a research framework that is continually adapting based on the needs of the restoration community and results from previous investigations; the long-term research framework is outlined in the 2019-2023 5-Year Research Strategy (hereafter referred to as the 5-year plan). This research framework provides support for the National Seed Strategy for Rehabilitation and Restoration (Plant Conservation Alliance, 2015), Department of Interior Secretarial Order #3347 (Conservation Stewardship and Outdoor Recreation), and Department of Interior Leadership Priority #1 (Create a conservation stewardship legacy second only to Teddy Roosevelt). Research activities in FY19 centered on landscape genetics, collecting seeds in preparation for experimental common gardens, and planning and trials in support of experimental drought gardens. These activities were supported by three biological technicians, one of which was jointly funded by the Ecological Society of America for six pay periods. Most of the field-related activities, including plant trait measurement, seed/tissue collecting, and GRID (Germination for Restoration Information and Decision-making) experimental treatments at the Canyonlands Research Center near Moab, UT were assigned to these technicians. Contrary to the drought conditions the pervaded the Colorado Plateau in FY18, plentiful spring precipitation resulted in easily-collected plant tissue and seed collections. However, the cool and wet spring delayed the phenology of early blooming species, which caused difficulties for timing seed collecting. Furthermore, seed collecting for late blooming species was difficult because of lower than average monsoon precipitation. While Dr. Rob Massatti was the only scientist supported by the SBSC-CPNPP agreement in FY19, other scientists, including Drs. John Bradford, Seth Munson, Mike Duniway, Sasha Reed, and Daniel Winkler, spent a considerable amount of time providing expert guidance and support for individual projects. Work activities performed in support of each 5-year plan goal are discussed in turn.

Arizona, Colorado, New Mexico, Utah↗
USGS2024

2023-2024 Coastal sage scrub and chaparral community monitoring for western San Diego County

Western San Diego County is dominated by shrublands supporting biologically diverse native plant and animal communities. Widespread urbanization has led to regional habitat loss and fragmentation, and many species in these shrubland communities are rare, threatened, or endangered. Large-scale, multiple-species conservation planning has resulted in a regional preserve system that focuses on these shrubland communities. Several large-scale threats are leading to type conversion from shrub-dominated to non-native invasive annual grass-dominated vegetation. To understand the changes that are occurring to native shrublands, we have developed a vegetation monitoring program with several components at multiple spatial scales, focused on quantifying coastal sage scrub (CSS) and chaparral vegetation community characteristics. Several drivers of change associated with type conversion of native shrubland to non-native annual grassland have been identified by previous research including increasing fire frequency, nitrogen deposition from air pollution, and prolonged and intense drought associated with changing climate. Loss of ecological integrity indices have been proposed as useful measures of the threat of degradation and type conversion of shrublands in San Diego County. For this study, ecological integrity is defined as a system’s ability to maintain species’ relationships and functions comparable to natural habitat in the region. Previous studies have identified the percent cover of invasive non-native annual grasses as a proxy for overall ecological degradation (loss of integrity) that is consistent across native taxonomic groups. Increased cover of non-native grass is associated with lower integrity of the shrubland vegetation community as shrub-associated plant and animal species are replaced by species preferring grassy and disturbed habitats. The objectives of this CSS and chaparral vegetation community monitoring plan are to: 1) Determine the distribution, composition, structure, and integrity of CSS and chaparral vegetation communities on conserved lands in western San Diego County, 2) Identify whether these attributes of the vegetation communities are changing over time, and 3) Evaluate relationships of known drivers of change (threats) and environmental factors in association with changes in vegetation community attributes. The CSS and chaparral vegetation community monitoring program is divided into four components: 1) vegetation mapping, 2) GIS/remote sensing office analysis of landscape-scale data, 3) permanent field plots using Unmanned Aerial Systems (UAS) and field data collections, and 4) animal and target species surveys and rapid assessment protocols. The first component, which is not detailed in this vegetation monitoring plan, aims to map vegetation communities every 10-15 years based on a classification developed for western San Diego County. High resolution aerial imagery will be used to update the 2012 vegetation map and expand it across the entire study area. The second component uses remote sensing models to annually track ecological integrity of shrublands across the study area and will include a map of areas of change and areas of stability over several decades. These landscape-scale integrity classifications will be used to analyze ecological processes, threats, and abiotic factors relative to changes to shrubland ecological integrity over time and space. The third component includes field surveys of 100 permanent plots across areas historically mapped as shrublands. Surveys in the 1930s mapped vegetation types using plot data. By using this historical classification map, we included areas that have already type-converted from shrubland to non-native annual grassland. The plots were split between CSS (55 plots) and chaparral (45 plots) and stratified into four geographical eco-subregions to guarantee coverage over small patches of habitat along the heavily developed coast. Surveys will include the collection of UAS imagery at a very high resolution. Species-level identifications will be made from the imagery based on a plant list compiled of all species detected in the plot during a thorough field survey by botanists, combined with geo-referenced samples of plant species locations. In addition, herbaceous cover will be estimated in the field using nine 1-m diameter circles (one per subplot) to obtain ocular estimates of cover for each plant species within the circle frame. Soil samples will be collected and analyzed for important element compositions. These data will be analyzed to evaluate plot-level ecological integrity based on species composition and cover. Repeated monitoring will allow evaluation of changes in vegetation attributes over time with known drivers or threats and other environmental factors. In addition, analyses will focus on indicator species and various measures of biological diversity for the vegetation communities. Finally, animal species and rare plants will be assessed using either taxa-based rapid assessment protocols or specialized species-specific protocols for rarer species. The purpose of these assessments is to document the status, habitat, and threat covariates of specific species and confirm the species composition and diversity of animal taxonomic groups (e.g., pollinators). Diversity and abundance of animal species at vegetation plots will be used to refine measures and thresholds of ecological integrity. Rapid assessment protocols for animal taxonomic groups can include multiple detection methods such as, camera traps, cover boards, and bird point counts. Pollinators will be monitored at plots using a protocol currently being developed in conjunction with but separately from this plan. Target rare plant species will be monitored using the regional Inspect and Manage (IMG) protocol that measures the status of rare plant occurrences and habitat and threat covariates over time. Species-specific animal survey methods will be refined as these species are prioritized for future monitoring. The goal of this monitoring program is to classify CSS and chaparral vegetation community integrity, identify areas of degradation across western San Diego County, and characterize drivers, and environmental factors associated with loss of ecological integrity. A combination of vegetation mapping, landscape-scale remote sensing, and field plots will be used to address all the aspects of our research questions. Data compiled and collected will be available to conservation partners to help inform future management decisions.

California↗
USGS2006

Alteration of soil microbial communities and water quality in restored wetlands

Land usage is a strong determinant of soil microbial community composition and activity, which in turn determine organic matter decomposition rates and decomposition products in soils. Microbial communities in permanently flooded wetlands, such as those created by wetland restoration on Sacramento-San Joaquin Delta islands in California, function under restricted aeration conditions that result in increasing anaerobiosis with depth. It was hypothesized that the change from agricultural management to permanently flooded wetland would alter microbial community composition, increase the amount and reactivity of dissolved organic carbon (DOC) compounds in Delta waters; and have a predominant impact on microbial communities as compared with the effects of other environmental factors including soil type and agricultural management. Based on phospholipid fatty acid (PLFA) analysis, active microbial communities of the restored wetlands were changed significantly from those of the agricultural fields, and wetland microbial communities varied widely with soil depth. The relative abundance of monounsaturated fatty acids decreased with increasing soil depth in both wetland and agricultural profiles, whereas branched fatty acids were relatively more abundant at all soil depths in wetlands as compared to agricultural fields. Decomposition conditions were linked to DOC quantity and quality using fatty acid functional groups to conclude that restricted aeration conditions found in the wetlands were strongly related to production of reactive carbon compounds. But current vegetation may have had an equally important role in determining DOC quality in restored wetlands. In a larger scale analysis, that included data from wetland and agricultural sites on Delta islands and data from two previous studies from the Sacramento Valley, an aeration gradient was defined as the predominant determinant of active microbial communities across soil types and land usage. ?? 2005 Elsevier Ltd. All rights reserved.

Soil Biology and Biochemistry↗
USGS2007

Factors affecting the reproduction, recruitment, habitat, and population dynamics of pallid sturgeon and shovelnose sturgeon in the Missouri River

For more than a hundred years, human activities have modified the natural forces that control the Missouri River and its native fish fauna. While the ecological effects of regulation and channel engineering are understood in general, the current understanding is not sufficient to guide river restoration and management. The U.S. Geological Survey (USGS) is in the third year of a multiagency research effort to determine the ecological requirements for reproduction and survival of the endangered pallid sturgeon (Scaphirhynchus albus) and shovelnose sturgeon (Scaphirhynchus platorhynchus) in the Missouri River. The multidisciplinary research strategy includes components of behavior, physiology, habitat use, habitat availability, and population modeling of all life stages. Shovelnose sturgeon are used to design the strategy because they are closely related to the pallid sturgeon and are often used as a surrogate species to develop new research tools or to examine the effects of management actions or environmental variables on sturgeon biology and habitat use. During fiscal years 2005 and 2006, the U.S. Army Corps of Engineers (USACE) provided funds to USGS for tasks associated with the Comprehensive Sturgeon Research Program (CSRP) and for tasks associated with evaluation of the Sturgeon Response to Flow Modifications (SRFM). Because work activities of CSRP and SRFM are so integrated, we are providing information on activities that have been consolidated at the task level. These task activities represent chapters in this report.

Open-File Report↗
USGS2007

Project overview: Chapter A in Factors affecting the reproduction, recruitment, habitat, and population dynamics of pallid sturgeon and shovelnose sturgeon in the Missouri River

For more than a hundred years, human activities have modified the natural forces that control the Missouri River and its native fish fauna. While the ecological effects of regulation and channel engineering are understood in general, the current understanding is not sufficient to guide river restoration and management. The U.S. Geological Survey (USGS) is in the third year of a multiagency research effort to determine the ecological requirements for reproduction and survival of the endangered pallid sturgeon ( Scaphirhynchus albus ) and shovelnose sturgeon ( Scaphirhynchus platorhynchus ) in the Missouri River. The multidisciplinary research strategy includes components of behavior, physiology, habitat use, habitat availability, and population modeling of all life stages. Shovelnose sturgeon are used to design the strategy because they are closely related to the pallid sturgeon and are often used as a surrogate species to develop new research tools or to examine the effects of management actions or environmental variables on sturgeon biology and habitat use. During fiscal years 2005 and 2006, the U.S. Army Corps of Engineers (USACE) provided funds to USGS for tasks associated with the Comprehensive Sturgeon Research Program (CSRP) and for tasks associated with evaluation of the Sturgeon Response to Flow Modifications (SRFM). Because work activities of CSRP and SRFM are so integrated, we are providing information on activities that have been consolidated at the task level. These task activities represent chapters in this report.

Missouri River↗