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Design and methods of the U.S. Geological Survey Northeast Stream Quality Assessment (NESQA), 2016

During 2016, as part of the National Water-Quality Assessment Project (NAWQA), the U.S. Geological Survey conducted the Northeast Stream Quality Assessment (NESQA) to investigate stream quality in the northeastern United States. The goal of the NESQA was to assess the health of wadeable streams in the region by characterizing multiple water-quality factors that are stressors to aquatic life and by evaluating the relation between these stressors and the condition of biological communities. Urbanization, agriculture, and human modifications to streamflow are anthropogenic changes that greatly affect water quality in the region; consequently, the study design primarily selected sites and targeted stressors associated with these activities. The NESQA built on a prior NAWQA study conducted in the region in 2014, the Atlantic Highlands flow-ecology study, which investigated the effects of anthropogenically modified flows on aquatic biological communities in primarily forested watersheds. Land-cover data for the NESQA were used to identify and select sites within the region that had watersheds ranging in levels of urban and agricultural development. A total of 95 sites were selected: 67 on streams in watersheds representing a range of urban land use, 13 on streams in watersheds with some degree of agricultural land use, and 15 on streams in predominantly forested watersheds with little development. Depending on land-cover characteristics, sites were sampled weekly for metal and organic contaminants, nutrients, and sediment for either a 9-week period that began the week of June 6, 2016, or a 4-week period that begin the week of July 11, 2016. Beginning August 1, 2016, and for about 2 weeks, an ecological survey was conducted at every site to assess stream habitat, and algal, benthic invertebrate, and fish communities. Additional samples collected during the ecological surveys were streambed sediment for chemical analysis and toxicity testing, and fish tissue for mercury analysis. This report describes the various study components and methods of the NESQA and describes a precursor effort for the Atlantic Highlands flow-ecology study. Details are presented for measurements of water quality, sediment chemistry, streamflow, and ecological surveys of stream biota and habitat, as well as processes of sample analysis, quality assurance and quality control, and data management.

Open-File Report↗

Fish-community composition in Canacadea Creek, in the vicinity of Almond Lake, Allegany and Steuben counties, New York, 2000

The U.S. Army Corps of Engineers, Baltimore District, has been conducting biological surveys of the inflow and outflow streams of Almond Lake since the early 1980's. These surveys are made to identify possible detrimental effects as well as benefits of the reservoir and to better understand the aquatic communities in the vicinity of the lake at the present and over time. The U.S. Army Corps of Engineers and the U.S. Geological Survey jointly conducted a survey of the fish communities upstream and downstream of the lake in Canacadea Creek in September 2000. The fish communities upstream and downstream were compared and any differences or similarities seen in the communities were noted. This study found the fish communities to be in fair condition upstream and good condition downstream of Almond Lake, with Index of Biotic Integrity (IBI) scores of 3.5 and 5.0, respectively. The habitat conditions of both reaches were of suboptimal quality, with a score of 14 upstream and 15 downstream as determined by use of the U.S. Environmental Protection Agency's (USEPA) Rapid Bioassessment Protocols, and are capable of supporting fish communities. The Shannon Index indicates species richness and evenness and was 1.87 upstream and 3.22 downstream of the lake, indicating the upstream reach is severely impacted and the downstream reach appears to be not impacted. The Jaccards Coefficient and the Index of Similarity statistically show these communities are similar with scores of 0.55 and 0.71, respectively. Of the 12 species captured upstream, 11 of those also were captured downstream along with 8 other species for a total of 19 species downstream.

Open-File Report↗

Biological assessment of environmental flows for Oklahoma

Large-scale patterns in fish assemblage structure and functional groups are influenced by alterations in streamflow regime. In this study, we defined an objective threshold for alteration for Oklahoma streams using a combination of the expected range of 27 flow indices and a discriminant analysis to predict flow regime group. We found that fish functional groups in reference flow conditions had species that were more intolerant to flow alterations and preferences for stream habitat and faster flowing water. In contrast, altered sites had more tolerant species that preferred lentic habitat and slower water velocity. Ordination graphs of the presence and functional groups of species revealed an underlying geographical pattern roughly conforming to ecoregions, although there was separation between reference and altered sites within the larger geographical framework. Additionally, we found that reservoir construction and operation significantly altered fish assemblages in two different systems, Bird Creek in central Oklahoma and the Kiamichi River in southeastern Oklahoma. The Bird Creek flow regime shifted from a historically intermittent stream to one with stable perennial flows, and changes in fish assemblage structure covaried with changes in all five components of the flow regime. In contrast, the Kiamichi River flow regime did not change significantly for most flow components despite shifts in fish assemblage structure; however, most of the species associated with shifts in assemblage structure in the Kiamichi River system were characteristic of lentic environments and were likely related more to proximity of reservoirs in the drainage system than changes in flow. The spatial patterns in fish assemblage response to flow alteration, combined with different temporal responses of hydrology and fish assemblage structure at sites downstream of reservoirs, indicate that interactions between flow regime and aquatic biota vary depending on ecological setting. This supports the notion that regional variation in natural flow regimes could affect the development of flow recommendations.

Oklahoma↗

Plasticity of Least Tern and Piping Plover nesting behaviors in response to sand temperature

Birds that nest on the ground in open areas, such as Piping Plovers ( Charadrius melodus ) and Interior Least Terns ( Sternula antillarum athalassos ), are exposed to high temperatures in thermally stressful environments. As a result, some ground-nesting avian species have adapted behavioral strategies to maintain thermal regulation of eggs and themselves. We assessed the impact of sand temperature on shorebird nesting behaviors by installing video cameras and thermocouples at 52 Least Tern and 55 Piping Plover nests on the Missouri River in North Dakota during the 2014–2015 breeding seasons. Daily duration and frequency of shading behaviors exhibited a nonlinear relationship with temperature; therefore, we used segmented regressions to determine at what threshold temperature (mean temperature = 25.7 ⸰ C for shading behavior daily frequency and mean temperature = 25.1 ⸰ C for shading behavior daily duration) shorebird adults exhibited a behavioral response to rising sand temperatures. Daily nest attendance of both species decreased with increasing sand temperatures in our system. Frequency and duration of daily shading behaviors were positively correlated with sand temperatures above the temperature threshold. Piping Plovers exhibited more and longer shading behaviors above and below the temperature thresholds (below: frequency = 10.30 ± 1.69 se, duration = 7.29 min ± 2.35 se; above: frequency = 59.27 ± 6.87 se) compared to Least Terns (below: frequency = −1.37 ± 1.98 se, duration = −0.73 min ± 1.51 se; above: frequency = 31.32 ± 7.29 se). The effects of sand temperature on avian ground-nesting behavior will be critical to understand in order to adapt or develop recovery plans in response to climate change.

North Dakota↗

Range-wide greater sage-grouse hierarchical monitoring framework—Implications for defining population boundaries, trend estimation, and a targeted annual warning system

Incorporating spatial and temporal scales into greater sage-grouse ( Centrocercus urophasianus ) population monitoring strategies is challenging and rarely implemented. Sage-grouse populations experience fluctuations in abundance that lead to temporal oscillations, making trend estimation difficult. Accounting for stochasticity is critical to reliably estimate population trends and investigate variation related to deterministic factors on the landscape, which are amenable to management action. Here, we describe a novel, range-wide hierarchical monitoring framework for sage-grouse centered on four objectives: (1) create a standardized database of lek counts, (2) develop spatial population structures by clustering leks, (3) estimate spatial trends at different temporal extents based on abundance nadirs (troughs), and (4) develop a targeted annual warning system to help inform management decisions. Using automated and repeatable methods (software), we compiled a lek database (as of 2019) that contained 262,744 counts and 8,421 unique lek locations from disparate state data. The hierarchical population units (clusters) included 13 nested levels, identifying biologically relevant units and population structure that minimized inter-cluster sage-grouse movements. With these products, we identified spatiotemporal variation in trends in population abundance using Bayesian state-space models. We estimated 37.0, 65.2, and 80.7-percent declines in abundance range-wide during short (17 years), medium (33 years), and long (53 years) temporal scales, respectively. However, some areas exhibited evidence of increasing trends in abundance in recent decades. Models predicted 12.3, 19.2, and 29.6 percent of populations (defined as clusters of neighboring leks) consisted of over 50-percent probability of extirpation at 19, 38, and 56-year projections from 2019, respectively, based on averaged annual rate of change in apparent abundance across two, four, and six oscillations (average period of oscillation is 9.4 years). At the lek level, models predicted 45.7, 60.1, and 78.0 percent of leks with over 50-percent extirpation probabilities over the same time periods, respectively, mostly located on the periphery of the species’ range. The targeted annual warning system automates annual identification of local populations exhibiting asynchronous decline relative to regional population patterns using simulated management actions and an optimization algorithm for evaluating range-wide stabilization of population abundance. In 2019, approximately 3.2 percent of leks and 2.0 percent of populations were identified by the targeted annual warning system for management intervention range-wide.

California, Colorado, Idaho, Montana, Nevada, Nort↗

Biological and associated water-quality data for lower Olmos Creek and upper San Antonio River, San Antonio, Texas, April - September 1989

Biological and associated water-quality data were collected from lower Olmos Creek and upper San Antonio River in San Antonio, Texas, during April-September 1989. Benthic macroinvertebrate, periphyton, and phytoplankton communities were sampled at three sites along the Olmos Creek/San Antonio River system. Total mean densities of benthic macroinvertebrates for the three sites ranged from 670 to 10,000 organisms per square meter. The most abundant macroinvertebrates were the class Insecta (insects). Total densities of periphyton ranged from 2,900 to 110,000 cells per square millimeter. Cyanophyta (blue-green algae) and Bacillariophyta (diatoms) were the predominant periphyton organisms. Total densities of phyto- plankton ranged from 5,000 to 47,000 cells per square milliliter. Blue-green algae accounted for more than one- half of the phytoplankton in each sample. Hardness ranged from 160 to 250 milligrams per liter as calcium carbonate, and alkalinity ranged from 130 to 220 milligrams per liter as calcium carbonate. The largest dissolved nitrite concentration was 0.038 milligram per liter. The largest total phosphorus concentration was 0.150 milligram per liter, over one-half of which was dissolved orthophosphate. Total aluminum and total iron were the only trace elements in water to exceed the reporting threshold by large concen- trations. Total aluminum concentrations ranged from 70 to 280 micrograms per liter, and total iron concentrations ranged from 70 to 340 micrograms per liter. Lead was the most prominent trace element in bottom-material samples, with concentrations ranging from 30 to 230 micrograms per gram.

Open-File Report↗

Quality of rivers of the United States, 1975 water year; based on the National Stream Quality Accounting Network (NASQAN)

The National Stream Quality Accounting Network (NASQAN) was established by the U.S. Geological Survey to provide a nationally uniform basis for continuously assessing the quality of U.S. rivers. Stations generally are at the downstream end of hydrologic accounting units in order to measure the quantity and quality of water flowing from the units. The 1975 water year was the first year of operation of the network that represents essentially all of the accounting units and thereby describes the water- quality of the entire country. Data are available on a large number of water-quality constituents measured at 345 stations during the 1975 water year. Temperature data (usually continuous or daily measurements) from NASQAN stations were fitted to a first order harmonic equation and the parameters for the harmonic function are reported for each station. Mean temperatures generally range from 5°-10°C in the North to more than 20°C along the southern border of the continental United States and in Hawaii and Puerto Rico; means were less than 10°C at 63 stations and greater than 25°C at only 7 stations. Amplitudes of the temperature curves are greatest (greater than 12°C) for the streams at midlatitudes and in the Great and Central Plains, and they are smallest for the subtropical and cold-climate streams. Considering chemical and biological characteristics of U.S. streams as described by NASQAN data, water quality is best (by many standards) in the Northeast, Southeast, and Northwest. Waters there generally are low in dissolved solids and major and minor chemical constituents, generally are soft (except in Florida), and carry relatively small amounts of sediment. These conditions mainly reflect the geology of the regions and the relatively large amounts of precipitation. However, many of these waters show the effects of pollution and carry moderate or high levels of major nutrients and have correspondingly high populations of attached and floating plants. High counts of indicator bacteria also show signs of local pollution, particularly in regions of the country with large human and animal populations. In the Northeast, some heavy metals are at moderate levels, but not above most water-quality criteria. Rivers of most of the Mid-Continent and Southwest reflect the arid or semi-arid climate, erodible soils, and agricultural activities. They are characterized by moderate to high levels of dissolved major and minor constituents, sediment, major nutrients, and biota (floating and attached aquatic plants and indicator bacteria). In addition, the most incidences of pesticides in stream and bottom sediments were found in these regions. A special analysis was made to study the patterns of dissolved solids, major nutrients, phytoplankton, and zinc in the Mississippi River above Memphis, Tennessee. It was found that flow volume is an important factor in influencing river quality, and that stations with low concentration of major nutrients generally had low phytoplankton populations as well.

Open-File Report↗

Water-quality assessment of the Eastern Iowa Basins: Hydrologic and biologic data, October 1996 through September 1998

Hydrologic and biologic data collected from October 1996 through September 1998 in the Eastern Iowa Basins study unit of the U.S. Geological Survey National Water-Quality Assessment Program are presented in this report. Monthly data collected from 12 sites on rivers and streams included measurements of physical properties and determinations of the concentrations of nutrients, major ions, organic carbon, trace elements, suspended sediment, and dissolved pesticides. Fish-tissue samples were collected at two sites in September 1997 and analyzed for organochlorine pesticides. In addition, water-quality assessments were made at 25 sites as part of a synoptic study in August 1997 and May 1998. A ground-water study was conducted to evaluate the effects of agricultural and urban land use on the water quality of shallow alluvial aquifers in the study unit. Samples were collected and analyzed from wells in 31 agricultural and 30 urban land-use areas during June-August 1997. Samples were collected and analyzed from 32 domestic wells during June-July 1998 to provide a broad assessment of the water quality of shallow alluvial aquifers throughout the study unit. Samples were collected during August 1998 from 27 shallow monitoring wells completed in the Iowa River alluvial aquifer to evaluate the effects of changing land use on shallow ground-water quality. Ground-water samples were analyzed for physical properties, nutrients, major ions, organic carbon, trace elements, dissolved pesticides, volatile organic compounds, radon-222, and tritium.

Iowa↗

Biological Evaluations of an Off-Stream Channel, Horizontal Flat-Plate Fish Screen-The Farmers Screen

Screens are commonly installed at water diversion sites to reduce entrainment of fish. Recently, the Farmers Irrigation District in Hood River, Oregon, developed a new flat-plate screen design that offers passive operation and may result in reduced operation and installation costs to irrigators. To evaluate the performance (its biological effect on fish) of this type of screen, two size classes of juvenile coho salmon (Oncorhynchus kistuch) were released over a small version of this screen in the field-the Herman Creek screen. The performance of the screen was evaluated over a range of inflow [0.02 to 0.42 m3/s (cubic meters per second)] and diversion flows (0.02 to 0.34 m3/s) at different weir wall heights. The mean approach velocities for the screen ranged from 0 to 5 cm/s (centimeters per second) and mean sweeping velocities ranged from 36 to 178 cm/s. Water depths over the screen surface ranged from 1 to 25 centimeters and were directly related to weir wall height and inflow. Passage of juvenile coho salmon over the screen under a variety of hydraulic conditions did not severely injure them or cause delayed mortality. For all fish, the mean percentage of body surface area that was injured after passage over the screen ranged from about 0.4 to 3.0%. This occurred even though many fish contacted the screen surface during passage. No fish were observed becoming impinged on the screen surface (greater than 1 second contact with the screen). When operated within its design criteria (diversion flows of about 0.28 m3/s), the screen provided safe and effective downstream passage of juvenile salmonids under a variety of hydraulic conditions. However, we do not recommend operating the screen at inflows less than 0.14 m3/s (5 ft3/s) because water depth can get quite shallow and the screen can completely dewater, particularly at very low flows.

Open-File Report↗

California State Waters Map Series — Offshore of San Francisco, California

In 2007, the California Ocean Protection Council initiated the California Seafloor Mapping Program (CSMP), designed to create a comprehensive seafloor map of high-resolution bathymetry, marine benthic habitats, and geology within California’s State Waters. The CSMP approach is to create highly detailed seafloor maps through collection, integration, interpretation, and visualization of swath sonar data, acoustic backscatter, seafloor video, seafloor photography, high-resolution seismic-reflection profiles, and bottom-sediment sampling data. The map products display seafloor morphology and character, identify potential marine benthic habitats, and illustrate both the surficial seafloor geology and shallow (to about 100 m) subsurface geology. The Offshore of San Francisco map area is centered on the City of San Francisco and the Golden Gate channel, a waterway that connects the Pacific Ocean to the San Francisco Bay between the Marin Headlands and San Francisco Peninsula. The San Francisco Bay Area is the second-largest urban area on the U.S. West Coast with a combined population of over seven million. The bay supports several major cargo ports and the Port of San Francisco’s Fisherman’s Wharf is a major center for Northern California’s commercial and sport fishing fleets. The coastal part of the map area predominantly consists of high bluffs and vertical sea cliffs shaped by uplift and erosion of the Marin Headlands and San Francisco Peninsula east of the San Andreas and San Gregorio Fault Zones. The seafloor in the map area extends from the shoreline and western end of the Golden Gate channel to water depths of about 30 to 50 m, except for the San Andreas graben area, where water depths reach 75 m. Sea-level rise, tidal currents, and tectonics have shaped bathymetry in the map area. During the Last Glacial Maximum, Sea level was about 125 m lower than present day and the shoreline was more than 45 km west of San Francisco near the Farallon Islands. At that time, the map area was part of a large alluvial plain connected to a drainage basin that included much of California’s Central Valley. A river system flowed westward through the narrows of the Golden Gate channel and an alluvial valley bounded to the north and south by bedrock highlands, including the present-day Pacifica-Pescadero and Bolinas shelves. Rising seas entered the Golden Gate about 11,000 to 10,000 years ago and subsequent marine flooding led to progressive growth of the San Francisco Bay. Strong tidal currents, accelerating through the relatively narrow Golden Gate, have scoured the bedrock channel to a depth of 113 m. East and west of the channel, tidal currents decelerate and form large fields of sand waves. Offshore of the Marin Headlands, eastward transfer of right-lateral fault slip in a complex of faults northwest of the map area has caused extension and the formation of a sediment basin called the San Andreas graben on the continental shelf. The accommodation space created by extension on the shelf and the proximity to sediment transported to the ocean through San Francisco Bay results in a sand-dominated offshore shelf environment. Seafloor habitats in the Offshore of San Francisco map area comprise significant sand-dominated sediment habitat with sand wave and ripple bedforms indicative of high wave and current energy. North of the Golden Gate, biological productivity resulting from coastal upwelling supports populations of Sooty Shearwater, Western Gull, Common Murre, Cassin’s Auklet, and many other less populous bird species. In addition, an observable recovery of Humpback and Blue Whales has occurred in the area; both species are dependent on coastal upwelling to provide nutrients. For the first time in 65 years, Pacific Harbor Porpoise returned to San Francisco Bay in 2009. On the coast north of the Golden Gate, the large extent of exposed inner shelf bedrock supports large forests of “bull kelp,” which is well adapted for high wave-energy environments. Common fish species found in the kelp beds and rocky reefs include painted greenling, kelp greenling, lingcod, and several varieties of rockfish. Circulation over the continental shelf in the Offshore of San Francisco map area is dominated by the southward-flowing California Current, an eastern limb of the North Pacific Gyre that flows from Oregon to Baja California. At its midpoint offshore of central California, the California Current transports subarctic surface waters southeastward, about 150 to 1,300 km from shore. Seasonal northwesterly winds that are, in part, responsible for the California Current, generate coastal upwelling. Ocean temperatures offshore of central California have increased over the past 50 years, driving an ecosystem shift from the productive subarctic regime towards a depopulated subtropical environment.

California↗

Annotated bibliography of scientific research on greater sage-grouse published since January 2015

The greater sage-grouse ( Centrocercus urophasianus ; hereafter GRSG) has been a focus of scientific investigation and management action for the past two decades. The 2015 U.S. Fish and Wildlife Service listing determination of “not warranted” was in part due to a large-scale collaborative effort to develop strategies to conserve GRSG populations and their habitat and to reduce threats to both. New scientific information augments existing knowledge and can help inform updates or modifications to existing plans for managing GRSG and sagebrush ecosystems. However, the sheer number of scientific publications can be a challenge for managers tasked with evaluating and determining the need for potential updates to existing planning documents. To assist in this process, the U.S. Geological Survey (USGS) has reviewed and summarized the scientific literature published since January 1, 2015. To identify articles and reports published about GRSG, we first conducted a structured search of three reference databases (Web of Science, Scopus, and Google Scholar) using the search term “greater sage-grouse.” We refined the initial list of products by (1) removing duplicates, (2) excluding products that were not published as research or scientific review articles in peer-reviewed journals or as formal government technical reports, and (3) retaining only those products for which GRSG or their habitat was a research focus. We summarized the contents of each product by using a consistent structure (background, objectives, methods, location, findings, and implications) and assessed the content of each product relevant to a list of 31 management topics. These topics include GRSG biology and habitat characteristics along with potential management actions, land uses, and environmental factors related to GRSG management and conservation. We also noted which articles/reports created new geospatial data. The final search was conducted on January 6, 2018, and application of our criteria resulted in the inclusion of 169 published products (2 of these products were published corrections to journal articles). The management topics most commonly addressed were GRSG behavior or demographics and GRSG habitat selection or habitat characteristics at broad or site scales. Few products addressed captive breeding, recreation, wild horses and burros, and range management structures (including fences). We include in this annotated bibliography the full citation, product summary, and management topics addressed by each product. The online version of this bibliography ( https://apps.usgs.gov/gsgbib/index.php ) is searchable by topic and location and includes links to the original publications. A substantial body of literature has been compiled based on research explicitly related to the conservation, management, monitoring, and assessment of GRSG. These studies may inform planning and management actions that seek to balance conservation, economic, and social objectives and manage diverse resource uses and values across the western United States. The review process for this product included requesting input on each summary from one or more authors of the original peer-reviewed article or report and a formal review of the entire document by three independent reviewers and, subsequently, the USGS Bureau Approving Official. This process is consistent with USGS Fundamental Science Practices.

Open-File Report↗

Field screening of water quality, bottom sediment, and biota associated with irrigation drainage, Wind River Indian Reservation, Wyoming, 1992-93

Physical, chemical, and biological data were collected in 1992-93 from irrigation drainage areas and wetlands of the Wind River Federal Irrigation Project, Wind River Indian Reservation, Wyoming. Most samples collected had concentrations of chemical constituents less than the established levels of concern for water, bottom sediment, and biota. In the Little Wind Unit irrigation area, however, selenium and mercury concentrations in water exceeded criteria established by the U.S. Environmental Protection Agency. Six water samples analyzed from the Little Wind Unit in 1993 had selenium concentrations that equaled or exceeded 5 micrograms per liter. Concentrations of mercury in water were 0.1 micrograms per liter or less, except at four sites: one sample collected in 1993 from Sharp Nose Draw (4.9 micrograms per liter) and three samples collected in 1992 from Little Wind Unit and Johnstown Unit (0.2 micrograms per liter). Mercury concentrations in all bottom-sediment samples were less than 0.02 micrograms per liter, except at Sharp Nose Pond where a concentration of 0.02 micrograms per liter was measured. Selenium concentrations in some aquatic vegetation, inverte- brates, fish, bird eggs, and bird livers collected from the Little Wind Unit in 1993 exceeded established levels of concern. At Goose Pond and Sharp Nose Pond, selenium in the livers of five bird samples collected exceeded the 10 micrograms per gram level associated with reproductive failure in aquatic birds. Mercury concentrations in the livers of birds sampled at Sharp Nose Pond also were greater than suggested levels in dietary items for the protection of sensitive species of mammals and birds that regularly consume aquatic organisms.

Open-File Report↗

Vascular Plant and Vertebrate Inventory of Saguaro National Park, Tucson Mountain District

This report summarizes the results of the first comprehensive inventory of plants and vertebrates at the Tucson Mountain District (TMD) of Saguaro National Park, Arizona. From 2001 to 2003 we surveyed for vascular plants and vertebrates (amphibians, reptiles, birds, and mammals) at the district to document the presence of species within its boundaries. Park staff also carried out extensive infrared-triggered camera work for medium and large mammals from 2002-2005 and results from that effort are reported here. Our spatial sampling design for all taxa employed a combination of random and nonrandom survey sites. Survey effort was greatest for medium and large mammals and herpetofauna. Because we used repeatable study designs and standardized field methods, these inventories can serve as the first step in a biological monitoring program for the district. We also provide an overview of previous survey efforts in the district. We use data from our inventory and other surveys to compile species lists and to assess inventory completeness. The survey effort for herpetofauna, birds, and medium and large mammals was the most comprehensive ever undertaken in the district. We recorded a total of 320 plant and vertebrate species, including 21 species not previously found in the district (Table 1). Based on a review of our inventory and past research at the district, there have been a total of 723 species of plants and vertebrates found there. We believe inventories for most taxonomic groups are nearly complete. Based on our surveys, we believe the native plant and vertebrate community compositions of the district are relatively intact, though some species loss has occurred and threats are increasing, particularly to herpetofauna and larger mammals. Of particular note is the relatively small number of non-native species and their low abundance in the district, which is in contrast to many nearby natural areas. Rapidly expanding development on the west, north, and east sides of the district is cause for concern that the park continue its commitment to environmental restoration, which is largely responsible for reducing the threats posed by non-native plants. With continued maintenance of natural processes and the ecological structure of the park's biodiversity, the park will become an increasingly important place to both the general public and the scientific community. This report supersedes results reported in Powell et al. (2002, 2003).

Open-File Report↗

Assessment of the geoavailability of trace elements from selected zinc minerals

This assessment focused on five zinc-bearing minerals. The minerals were subjected to a number of analyses including quantitative X-ray diffraction, optical microscopy, leaching tests, and bioaccessibility and toxicity studies. Like a previous comprehensive assessment of five copper-bearing minerals, the purpose of this assessment was to obtain structural and chemical information and to characterize the reactivity of each mineral to various simulated environmental and biological conditions. As in the copper minerals study, analyses were conducted consistent with widely accepted methods. Unless otherwise noted, analytical methods used for this study were identical to those described in the investigation of copper-bearing minerals. Two sphalerite specimens were included in the zinc-minerals set. One sphalerite was recovered from a mine in Balmat, New York; the second came from a mine in Creede, Colorado. The location and conditions of origin are significant because, as analyses confirmed, the two sphalerite specimens are quite different. For example, data acquired from a simulated gastric fluid (SGF) study indicate that the hydrothermally formed Creede sphalerite contains orders of magnitude higher arsenic, cadmium, manganese, and lead than the much older metamorphic Balmat sphalerite. The SGF and other experimental results contained in this report suggest that crystallizing conditions such as temperature, pressure, fluidization, or alteration processes significantly affect mineral properties—properties that, in turn, influence reactivity, solubility, and toxicity. The three remaining minerals analyzed for this report—smithsonite, hemimorphite, and hydrozincite—are all secondary minerals or alteration products of zinc-ore deposits. In addition, all share physical characteristics such as tenacity, density, streak, and cleavage. Similarities end there. The chemical composition, unit-cell parameters, acid-neutralizing potential, and other observable and quantifiable properties indicate very different minerals. Only one of each of these minerals was studied. Had this assessment included multiples of these minerals, geochemical and mineralogical distinctions would have emerged, similar to the results for the two sphalerite specimens.

Arizona;Chihuahua;Colorado;New York↗

Earliest Phanerozoic or latest Proterozoic fossils from the Arabian Shield, Kingdom of Saudi Arabia

We report here the first biologically definable fossils from pre-Saq (pre-Middle Cambrian) rocks of the Arabian Shield. They include the distinctive helically coiled tubular filaments of the oscillatorialean blue-green alga Obruchevella parva as well as two size classes of spheroidal unicells of uncertain affinity. Also present is the conical stromatolite Conophyton and unidentified stromatolites. All occur in cherty limestones of the Jubaylah group, northern Saudi Arabia, a non-marine to locally marine taphrogeosynclinal sequence that fills depressions along the northwest-trending Najd faults. Conophyton has heretofore been found only in strata older than about 680 m.y. (except for puzzling records in modern hot springs) while Obruchevella is so far known only from rocks between about 680 and 470 m.y. old. Thus it appears that the Jubaylah group is close to the Proterozoic-Phanerozoic transition. The simple spheroidal nannofossils are not diagnostic as to age. Their relationships within what appears to be early diagenetic chert suggest a classical algal-mat association. The brecciated and micro-channeled appearance of much of the fossiliferous rock, its locally dolomitic nature, and the prevalence of cryptalgalaminate favor a very shallow, locally turbulent, and perhaps episodically exposed marine or marginal marine setting. The Jubaylah group lies unconformably beneath the Siq Sandstone (basal member of the Saq Sandstone) of medial Cambrian age, rests nonconformably on crystalline basement, and has yielded a K-Ar whole-rock age (on andesitic basalt) of ~540 m.y. To judge from the fossils, however, that age may be as much as 100 m.y. or more too young.

Open-File Report↗

Streamflow, water-quality, and biological data on streams in an area of longwall coal mining, southern Ohio, water years 1987-89

This report presents data on the first 3 years of a 5-year study of the effects of longwall coal mining on six streams near a mining complex in Meigs, Gallia, and Vinton Counties, Ohio. Longwall coal mining is method of underground mining in which 75 to 90 percent of the coal is removed; conventional methods, such as room-and-pillar mining, remove only about 50 percent of the coal. Use of the longwall method is expected to increase in Ohio. Collapse or subsidence of the overburden and land surface occurs immediately after the removal of the coal. Such collapse can disrupt surface drainage and the recharge of ground water. The data include streamflow, water quality, and the abundance and diversity of aquatic macroinvertebrates and fish. The data were collected from eight sites on six streams from July 1987 through September 1989. The drainage areas of these sites range from 2.04 to 80.8 square miles and include the major drainages of the area being mined. Total precipitation in 1987 and 1988 in the study area was 78 and 81 percent, respectively, of the annual average (from 1939 to 1989) of 39.59 inches. The total precipitation in 1989 was 135 percent of the annual average. Streams at six of the eight sites were dry for parts of the first 2 years. Specific conductance ranged from 180 to 3,500 microsiemens per centimeter at 25 degrees Celsius, pH ranged from 6.9 to 8.0, and the concentration of total recoverable iron ranged from 80 to 1,800 micrograms per liter. Macroinvertebrate and fish populations indicate a warmwater-habitat rating of fair to good according to Ohio Environmental Protection Agency standards. This information will help provide a data base from which the effects of longwall mining on streams in southern Ohio can be evaluated. Correlations of surface-water quality and quantity with longwall mining were not attempted in this study.

Open-File Report↗

Interim report on the scientific investigations in the Animas River watershed, Colorado to facilitate remediation decisions by the U.S. Bureau of Land Management and the U.S. Forest Service, March 29, 2000 meeting, Denver, Colo.

INTRODUCTION The joint U.S. Department of the Interior and U.S. Department of Agriculture Abandoned Mine Lands Initiative (AMLI) was developed as a collaborative effort between the Federal land management agencies (FLMA, that is the U.S. Bureau of Land Management and the U.S. Forest Service) and the U.S. Geological Survey (USGS) in 1996. The stated goal of the AML Initiative was to develop a strategy for gathering and communicating the scientific information needed to develop effective and cost-efficient remediation of abandoned mines within the framework of a watershed. Four primary objectives of the AMLI are to: 1. Provide the scientific information needed (in the short-term) by the FLMAs to make decisions related to the design and implementation of cleanup actions, 2. Develop a multi-disciplined, multi-division approach that integrates geologic, hydrologic, geochemical and ecological information into a knowledge base for sound decision making, 3. Transfer technologies developed within the scientific programs of the USGS to the field and demonstrate their suitability to solve real, practical problems, and 4. Establish working relationships among involved members of land management and regulatory agencies within the framework of a watershed approach to the cleanup of abandoned mines. Long-term process-based research, including development of analytical tools, is recognized as being critical to the long-term success in remediating watersheds impacted by historical mining activities (AML 5-year plan, http://amli.usgs.gov/amli). In a meeting of Federal agencies (U.S. Bureau of Land Management [BLM], U.S. Bureau of Reclamation [BOR], U.S. National Park Service [NPS], U.S. Forest Service [USFS], the U.S. Environmental Protection Agency [EPA], the U.S. Fish and Wildlife Service [F&WS]), and State agencies (Colorado Division of Public Health and Environment, Colorado Division of Mines and Geology), several watersheds were examined within the state whose water quality was presumed to be impacted by historical mining activities. The Animas River watershed (fig. 1) was selected by the State and Federal agencies as one of two watersheds in the U.S. to be studied in detail by the USGS in the AML Initiative. Beginning in October 1997, each of the four Divisions of the USGS (Water Resources, Geologic, Biological Resources, and National Mapping) initiated a collaborative integrated science study of the watershed. Funds were provided from USGS base funding to each of the four Divisions in response to the priorities set by Congressional action and within the flexibility provided by the budgetary framework funding individual research programs. The AML Initiative provides for a five-year focused scientific effort in the two watersheds with final synthesis of the scientific results from each to be published in 2001. Publications are released on the AML web site on a regular basis (http://amli.usgs.gov/amli). On March 29, 2000, the USGS hosted a meeting for the BLM and USFS to discuss remediation options that were under consideration for the summer of 2000. The purpose of this report is to provide an overview of the scientific rational provided by the USGS to meet objective one above, and to summarize our preliminary interpretations of our data. Additional information from sites on private lands have been collected by the State of Colorado, EPA, and the ARSG. Unfortunately, these data have not been fully supplied to the USGS so our conclusions are based only upon our data. These interpretations provide science-based constraints on possible remediation options to be considered by the FLMA, the State, and local property owners in the Animas River watershed. The report is presented in outline format to facilitate discussion of remediation options at the March 29, 2000 meeting. Not all historical mining sites within the watershed are on public lands. This should not be construed to be a final report of the USGS

Denver↗

Lidar estimation of storage capacity for managed water resources used by Desert Bighorn Sheep (Ovis canadensis mexicana) at Cabeza Prieta National Wildlife Refuge, Arizona

In cooperation with the U.S. Fish and Wildlife Service, the U.S. Geological Survey Southwest Biological Science Center employed ground-based light detection and ranging (lidar) during February 2022 to help meet two resource management objectives at the Cabeza Prieta National Wildlife Refuge (CPNWR), Arizona. The two objectives are (1) characterize the water storage capacity for one developed and two modified tanks, which are bedrock catchments also referred to as tinajas, that are important water sources for desert bighorn sheep ( Ovis canadensis mexicana ) in designated wilderness at the CPNWR; and (2) develop a stage-storage model to estimate water volumes from monitoring observations of water surface levels in each tank. We measured storage capacity for the three tanks identified by refuge managers, Buckhorn, Senita, and Eagle, using ground-based lidar collected during February 2022. These data produced high-resolution (centimeter scale) topographic models that improved estimates of maximum water storage capacity over previous geometry-based estimates, permitting estimations of storage capacity at multiple water surface levels (stage heights). We found that the maximum water storage capacity for the Buckhorn, Senita, and Eagle tanks was 9,108.730, 8,623.308, and 6,039.603 US gallons (gal), respectively. For each tank we report a stage-storage model based on a polynomial function that best explained variability in water storage capacity as a function of water stage height. The results presented herein will permit the CPNWR managers to (1) easily estimate water available for wildlife at any point of time, (2) interpret tank recharge following rainstorms, and (3) decide whether and when to transport water via vehicles to mechanically refill the tanks in designated wilderness.

Arizona↗